ClCG07G002000 (gene) Watermelon (Charleston Gray)

Overview
NameClCG07G002000
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr07 : 2108080 .. 2108598 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTAGCAACTACTACCTACATCCGCTGCCGTCTCCACCGCAATGACGGCGGCACCGATCAATATCTCGAAATCCGAATGGGGCGATTGCGACGGCTGATCTCCCGAAGACCGTTCGACGGAATACCGTACAAGATCCGCACAGAATCATCCTTGTTTTCGTTGGGGAATGCTACGCTCCCTCTCCCTCTGCGAAAGCTCCAAGATCCGTTGTTCTGCCATTCTTACATCGCTTCCTTTCTCTCCCACTTCAAATTCAGCGCCGTAGCCTCCGATCAAATCGCTCGTAACATCACGTCGTCCGTCGTTGAATTATTGGCCGGCGGAAACTACGACGCGAAGTTCTGCCTTGTGGCAGAAATCAATCACATCCGTCTGTTCTGGCCGGAGAATGAAGAAAACAGAAACGGCGAAGATCCGGCGAGTAAGAGGTTGAAGAAGGAGGAATTTGAAGATGGAGATTGCTCTGTTTGCCTTCAAGAACTGAAGGATGAGGTGTGCAGAATCCTAAAATAA

mRNA sequence

ATGTCTCTAGCAACTACTACCTACATCCGCTGCCGTCTCCACCGCAATGACGGCGGCACCGATCAATATCTCGAAATCCGAATGGGGCGATTGCGACGGCTGATCTCCCGAAGACCGTTCGACGGAATACCGTACAAGATCCGCACAGAATCATCCTTGTTTTCGTTGGGGAATGCTACGCTCCCTCTCCCTCTGCGAAAGCTCCAAGATCCGTTGTTCTGCCATTCTTACATCGCTTCCTTTCTCTCCCACTTCAAATTCAGCGCCGTAGCCTCCGATCAAATCGCTCGTAACATCACGTCGTCCGTCGTTGAATTATTGGCCGGCGGAAACTACGACGCGAAGTTCTGCCTTGTGGCAGAAATCAATCACATCCGTCTGTTCTGGCCGGAGAATGAAGAAAACAGAAACGGCGAAGATCCGGCGAGTAAGAGGTTGAAGAAGGAGGAATTTGAAGATGGAGATTGCTCTGTTTGCCTTCAAGAACTGAAGGATGAGGTGTGCAGAATCCTAAAATAA

Coding sequence (CDS)

ATGTCTCTAGCAACTACTACCTACATCCGCTGCCGTCTCCACCGCAATGACGGCGGCACCGATCAATATCTCGAAATCCGAATGGGGCGATTGCGACGGCTGATCTCCCGAAGACCGTTCGACGGAATACCGTACAAGATCCGCACAGAATCATCCTTGTTTTCGTTGGGGAATGCTACGCTCCCTCTCCCTCTGCGAAAGCTCCAAGATCCGTTGTTCTGCCATTCTTACATCGCTTCCTTTCTCTCCCACTTCAAATTCAGCGCCGTAGCCTCCGATCAAATCGCTCGTAACATCACGTCGTCCGTCGTTGAATTATTGGCCGGCGGAAACTACGACGCGAAGTTCTGCCTTGTGGCAGAAATCAATCACATCCGTCTGTTCTGGCCGGAGAATGAAGAAAACAGAAACGGCGAAGATCCGGCGAGTAAGAGGTTGAAGAAGGAGGAATTTGAAGATGGAGATTGCTCTGTTTGCCTTCAAGAACTGAAGGATGAGGTGTGCAGAATCCTAAAATAA

Protein sequence

MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNATLPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVAEINHIRLFWPENEENRNGEDPASKRLKKEEFEDGDCSVCLQELKDEVCRILK
Homology
[Close]
BLAST of ClCG07G002000 vs. TrEMBL
Match: A0A0A0L2F8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G036440 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 1 

Query: 1   MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
           M L + +  R  + R  G  +Q L+IR+GR+ RL+S  P  G+PY+I  ES+   +  AT
Sbjct: 1   MPLESASTFRYSIRRRCG-VEQSLQIRLGRIVRLLSGSPSAGLPYEILQESASIPVHEAT 60

Query: 61  LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
            PLPLR ++D   C  YI   LS F    V S  I++ ITS VVE+L  G+YDAKF +VA
Sbjct: 61  FPLPLRDVEDSCLCEIYILQLLSSFNLGTVTSGIISKKITSMVVEVLGAGDYDAKFEMVA 120

Query: 121 EINHIRL-FWPENEE 135
           EI+HIR+ FW E EE
Sbjct: 121 EIDHIRMYFWTEEEE 134

[Close]
BLAST of ClCG07G002000 vs. TrEMBL
Match: A0A0A0KYC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.0e-06
Identity = 58/177 (32.77%), Postives = 83/177 (46.89%), Query Frame = 1 

Query: 1   MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
           MS   ++ I   L+ N  G    LE+++  L R IS   F     +I  E+      NA 
Sbjct: 1   MSFEISSPIPYLLNANGFGNG-VLEVQLSYLERAISVSSFS---QRILYETQPTPFNNAL 60

Query: 61  LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGN-YDAKFCLV 120
             L + +LQ PLF   +I  FL       +  + IAR I S V  +  G   +++ F ++
Sbjct: 61  FYLSVHQLQHPLF---HIRQFLYSLN---IRRETIARQIASFVAHMCNGNTGWNSNFYVI 120

Query: 121 AEINHIRLFWPENEENRNG-EDPASKRLKK--EEFEDGDCSVCLQEL---KDEVCRI 171
           A ++ +R+   E +    G    A +RL K   E E GDCSVCL EL   K EV RI
Sbjct: 121 ARVDLVRVIRIEEQPRAEGWRGVAVERLSKLKSEEEKGDCSVCLDELDCEKREVIRI 167

[Close]
BLAST of ClCG07G002000 vs. NCBI nr
Match: gi|778688326|ref|XP_011652721.1| (PREDICTED: uncharacterized protein LOC105435064 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 3.3e-25
Identity = 79/196 (40.31%), Postives = 105/196 (53.57%), Query Frame = 1 

Query: 1   MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
           M L + +  R  + R  G  +Q L+IR+GR+ RL+S  P  G+PY+I  ES+   +  AT
Sbjct: 1   MPLESASTFRYSIRRRCG-VEQSLQIRLGRIVRLLSGSPSAGLPYEILQESASIPVHEAT 60

Query: 61  LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
            PLPLR ++D   C  YI   LS F    V S  I++ ITS VVE+L  G+YDAKF +VA
Sbjct: 61  FPLPLRDVEDSCLCEIYILQLLSSFNLGTVTSGIISKKITSMVVEVLGAGDYDAKFEMVA 120

Query: 121 EINHIRL-FWPENEE----------NRNG----------------EDPASKRLKKEEFED 166
           EI+HIR+ FW E EE           R G                 +   +R KK  F++
Sbjct: 121 EIDHIRMYFWTEEEERSWVGRGNNSERRGVVVEERVVLEGVPGRRREREREREKKGGFDE 180

[Close]
BLAST of ClCG07G002000 vs. NCBI nr
Match: gi|700200785|gb|KGN55918.1| (hypothetical protein Csa_3G036440 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 1.5e-22
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 1 

Query: 1   MSLATTTYIRCRLHRNDGGTDQYLEIRMGRLRRLISRRPFDGIPYKIRTESSLFSLGNAT 60
           M L + +  R  + R  G  +Q L+IR+GR+ RL+S  P  G+PY+I  ES+   +  AT
Sbjct: 1   MPLESASTFRYSIRRRCG-VEQSLQIRLGRIVRLLSGSPSAGLPYEILQESASIPVHEAT 60

Query: 61  LPLPLRKLQDPLFCHSYIASFLSHFKFSAVASDQIARNITSSVVELLAGGNYDAKFCLVA 120
            PLPLR ++D   C  YI   LS F    V S  I++ ITS VVE+L  G+YDAKF +VA
Sbjct: 61  FPLPLRDVEDSCLCEIYILQLLSSFNLGTVTSGIISKKITSMVVEVLGAGDYDAKFEMVA 120

Query: 121 EINHIRL-FWPENEE 135
           EI+HIR+ FW E EE
Sbjct: 121 EIDHIRMYFWTEEEE 134

The following BLAST results are available for this feature:
BLAST of ClCG07G002000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2F8_CUCSA1.1e-2246.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G036440 PE=4 SV=1[more]
A0A0A0KYC0_CUCSA9.0e-0632.77Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1[more]
BLAST of ClCG07G002000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778688326|ref|XP_011652721.1|3.3e-2540.31PREDICTED: uncharacterized protein LOC105435064 [Cucumis sativus][more]
gi|700200785|gb|KGN55918.1|1.5e-2246.67hypothetical protein Csa_3G036440 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G002000.1ClCG07G002000.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG07G002000Cla002714Watermelon (97103) v1wcgwmB374
ClCG07G002000Cla97C07G130280Watermelon (97103) v2wcgwmbB307
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG07G002000Melon (DHL92) v3.6.1medwcgB344
ClCG07G002000Melon (DHL92) v3.6.1medwcgB390
ClCG07G002000Melon (DHL92) v3.6.1medwcgB439
ClCG07G002000Silver-seed gourdcarwcgB0284
ClCG07G002000Silver-seed gourdcarwcgB0760
ClCG07G002000Silver-seed gourdcarwcgB0938
ClCG07G002000Cucumber (Chinese Long) v3cucwcgB258
ClCG07G002000Cucumber (Chinese Long) v3cucwcgB596
ClCG07G002000Watermelon (97103) v2wcgwmbB304
ClCG07G002000Watermelon (97103) v2wcgwmbB305
ClCG07G002000Wax gourdwcgwgoB558
ClCG07G002000Wax gourdwcgwgoB585
ClCG07G002000Watermelon (Charleston Gray)wcgwcgB036
ClCG07G002000Watermelon (Charleston Gray)wcgwcgB164
ClCG07G002000Cucumber (Gy14) v1cgywcgB082
ClCG07G002000Cucumber (Gy14) v1cgywcgB255
ClCG07G002000Cucumber (Gy14) v1cgywcgB457
ClCG07G002000Cucurbita maxima (Rimu)cmawcgB240
ClCG07G002000Cucurbita maxima (Rimu)cmawcgB467
ClCG07G002000Cucurbita maxima (Rimu)cmawcgB568
ClCG07G002000Cucurbita maxima (Rimu)cmawcgB811
ClCG07G002000Cucurbita moschata (Rifu)cmowcgB227
ClCG07G002000Cucurbita moschata (Rifu)cmowcgB466
ClCG07G002000Cucurbita moschata (Rifu)cmowcgB566
ClCG07G002000Cucurbita moschata (Rifu)cmowcgB750
ClCG07G002000Wild cucumber (PI 183967)cpiwcgB258
ClCG07G002000Wild cucumber (PI 183967)cpiwcgB264
ClCG07G002000Cucumber (Chinese Long) v2cuwcgB251
ClCG07G002000Cucumber (Chinese Long) v2cuwcgB255
ClCG07G002000Cucumber (Chinese Long) v2cuwcgB565
ClCG07G002000Melon (DHL92) v3.5.1mewcgB348
ClCG07G002000Melon (DHL92) v3.5.1mewcgB445
ClCG07G002000Watermelon (97103) v1wcgwmB382
ClCG07G002000Watermelon (97103) v1wcgwmB395
ClCG07G002000Cucurbita pepo (Zucchini)cpewcgB240
ClCG07G002000Cucurbita pepo (Zucchini)cpewcgB245
ClCG07G002000Cucurbita pepo (Zucchini)cpewcgB306
ClCG07G002000Cucurbita pepo (Zucchini)cpewcgB683
ClCG07G002000Cucurbita pepo (Zucchini)cpewcgB792
ClCG07G002000Bottle gourd (USVL1VR-Ls)lsiwcgB032
ClCG07G002000Bottle gourd (USVL1VR-Ls)lsiwcgB206
ClCG07G002000Bottle gourd (USVL1VR-Ls)lsiwcgB348
ClCG07G002000Bottle gourd (USVL1VR-Ls)lsiwcgB349
ClCG07G002000Cucumber (Gy14) v2cgybwcgB233
ClCG07G002000Cucumber (Gy14) v2cgybwcgB238
ClCG07G002000Cucumber (Gy14) v2cgybwcgB526