ClCG06G007550 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G007550
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Self-incompatibility protein 1
Location	CG_Chr06 : 9391992 .. 9392404 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCATCATTAGCACTTGTATTCCTAATGTTATTGTTGTTGCCCATTTGCCTGCATGCTACAGATGAATTAATCTCACTTCTACCAGAAACTACGGTCACTATTATCAACGAGGTGGGTGGCCCTCTATTGGGCATTCATTGTAGATCCAAGCAAACAGTTCATATTATAGAGTCAGATAGAAGCTACTCATTTACCTTCAGACCGAGCGTTTGAGGGATGATGTTATTTTACTGTAGCTTGGAATGGATTCAAGGTCAAGTCCACACTACTTCACTATTTACGACTTCAAAAGAGATGCAAAGACTTGCACCAACTGCAAATGGCTCGTTTACGCAAGTGGCCCCTGTTTGCAACACTCTGAAACTTCGATCACTTGTTCTCCTTGGATTAAGAATGCCCTTGAGTGA

mRNA sequence

ATGGCCTCATCATTAGCACTTGTATTCCTAATGTTATTGTTGTTGCCCATTTGCCTGCATGCTACAGATGAATTAATCTCACTTCTACCAGAAACTACGGTCACTATTATCAACGAGGTGGGTGGCCCTCTATTGGGCATTCATTGTAGATCCAAGCAAACAGTTCATATTATAGAGTCAGATAGAAGCTACTCATTTACCTTCAGACCGAGCCTTGGAATGGATTCAAGGTCAAGTCCACACTACTTCACTATTTACGACTTCAAAAGAGATGCAAAGACTTGCACCAACTGCAAATGGCTCGTTTACGCAAGTGGCCCCTGTTTGCAACACTCTGAAACTTCGATCACTTGTTCTCCTTGGATTAAGAATGCCCTTGAGTGA

Coding sequence (CDS)

ATGGCCTCATCATTAGCACTTGTATTCCTAATGTTATTGTTGTTGCCCATTTGCCTGCATGCTACAGATGAATTAATCTCACTTCTACCAGAAACTACGGTCACTATTATCAACGAGGTGGGTGGCCCTCTATTGGGCATTCATTGTAGATCCAAGCAAACAGTTCATATTATAGAGTCAGATAGAAGCTACTCATTTACCTTCAGACCGAGCCTTGGAATGGATTCAAGGTCAAGTCCACACTACTTCACTATTTACGACTTCAAAAGAGATGCAAAGACTTGCACCAACTGCAAATGGCTCGTTTACGCAAGTGGCCCCTGTTTGCAACACTCTGAAACTTCGATCACTTGTTCTCCTTGGATTAAGAATGCCCTTGAGTGA

Protein sequence

MASSLALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQTVHIIESDRSYSFTFRPSLGMDSRSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHSETSITCSPWIKNALE

Homology

[Close]

BLAST of ClCG06G007550 vs. TrEMBL
Match: B0F817_CUCME (Self-incompatibility protein 1 OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-48
Identity = 100/139 (71.94%), Postives = 110/139 (79.14%), Query Frame = 1


Query: 1   MASSLALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHI 60
           M SSLAL F M LLLPI LHATDELISLLPETTVTI+NEVGGPLLGIHCRSKQ    V++
Sbjct: 1   MTSSLALGFSMFLLLPISLHATDELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNV 60

Query: 61  IESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPC 120
           + SD+SYSF FRP++   +         +  PHYFTIYDFKRD KTCTNC+WLVYASGPC
Sbjct: 61  VSSDKSYSFNFRPNVWGTTLFYCVFEWVKGQPHYFTIYDFKRDGKTCTNCRWLVYASGPC 120

Query: 121 LQHSETSITCSPWIKNALE 128
           LQHSETSITC PW KNA E
Sbjct: 121 LQHSETSITCFPWNKNAPE 139

[Close]

BLAST of ClCG06G007550 vs. TrEMBL
Match: B0F818_CUCME (Self-incompatibility protein 2 OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.0e-47
Identity = 96/135 (71.11%), Postives = 107/135 (79.26%), Query Frame = 1


Query: 5   LALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESD 64
           +AL F M LLLPI LHATDELISLLPETTVTI+NEVGGPLLGIHCRSKQ    V+++ SD
Sbjct: 75  IALGFSMFLLLPISLHATDELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNVVSSD 134

Query: 65  RSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHS 124
           +SYSF FRP++   +         +  PHYFTIYDFKRD KTCTNC+WLVYASGPCLQHS
Sbjct: 135 KSYSFNFRPNVWGTTLFYCVFEWVKGQPHYFTIYDFKRDGKTCTNCRWLVYASGPCLQHS 194

Query: 125 ETSITCSPWIKNALE 128
           ETSITC PW KNA E
Sbjct: 195 ETSITCFPWNKNAPE 209

[Close]

BLAST of ClCG06G007550 vs. TrEMBL
Match: A0A0S3SB27_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G124000 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.0e-11
Identity = 48/130 (36.92%), Postives = 63/130 (48.46%), Query Frame = 1


Query: 7   LVFLMLLLLPICLHATDELISLLPETTVTIINEV-GGPLLGIHCRSKQT---VHIIESDR 66
           L+ L  +LL  C        +L PETTVT+ N + GGPLL +HC+SK     V  +  + 
Sbjct: 16  LLLLWFMLLSTCN-------ALGPETTVTVTNSLEGGPLLFLHCKSKDNDLGVQDLRPNA 75

Query: 67  SYSFTFRPSL--------GMDSRSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHSET 125
           S+S+ F  +                 H F IYD +RDA  CT C+W+V   GPCL  SE 
Sbjct: 76  SFSWKFGVNFFATTLFHCSFQWERVIHKFVIYDAERDADFCTRCRWIVKHDGPCLILSER 135

[Close]

BLAST of ClCG06G007550 vs. TrEMBL
Match: A0A078DH16_BRANA (BnaC08g00850D protein OS=Brassica napus GN=BnaC08g00850D PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.0e-11
Identity = 42/128 (32.81%), Postives = 67/128 (52.34%), Query Frame = 1


Query: 5   LALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESD 64
           L +VFL+++LL      + EL    P+TTVT+IN +GGPLL +HC+SK     +HI+ ++
Sbjct: 7   LCVVFLIMVLL---FGPSHELAPFWPDTTVTVINNLGGPLLTVHCKSKDDDLGIHIVAAN 66

Query: 65  RSYSFTFRPSL--------GMDSRSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHSE 122
           + Y F+F+P++             +    F I+D  RD        W +  +GPC    +
Sbjct: 67  KDYHFSFQPNVWKTTLFFCSFQWNNQVKRFDIFDATRDEGVGEKFNWTIKPNGPCKLGKK 126

[Close]

BLAST of ClCG06G007550 vs. TrEMBL
Match: A0A0D3DIV6_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.0e-11
Identity = 42/128 (32.81%), Postives = 67/128 (52.34%), Query Frame = 1


Query: 5   LALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESD 64
           L +VFL+++LL      + EL    P+TTVT+IN +GGPLL +HC+SK     +HI+ ++
Sbjct: 7   LCVVFLIMVLL---FGPSHELAPFWPDTTVTVINNLGGPLLTVHCKSKDDDLGIHIVAAN 66

Query: 65  RSYSFTFRPSL--------GMDSRSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHSE 122
           + Y F+F+P++             +    F I+D  RD        W +  +GPC    +
Sbjct: 67  KDYHFSFQPNVWKTTLFFCSFQWNNQVKRFDIFDATRDEGVGEKFNWTIKPNGPCKLGKK 126

[Close]

BLAST of ClCG06G007550 vs. NCBI nr
Match: gi|659121590|ref|XP_008460735.1| (PREDICTED: uncharacterized protein LOC103499497 [Cucumis melo])

HSP 1 Score: 200.7 bits (509), Expect = 1.6e-48
Identity = 100/139 (71.94%), Postives = 110/139 (79.14%), Query Frame = 1


Query: 1   MASSLALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHI 60
           M SSLAL F M LLLPI LHATDELISLLPETTVTI+NEVGGPLLGIHCRSKQ    V++
Sbjct: 1   MTSSLALGFSMFLLLPISLHATDELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNV 60

Query: 61  IESDRSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPC 120
           + SD+SYSF FRP++   +         +  PHYFTIYDFKRD KTCTNC+WLVYASGPC
Sbjct: 61  VSSDKSYSFNFRPNVWGTTLFYCVFEWVKGQPHYFTIYDFKRDGKTCTNCRWLVYASGPC 120

Query: 121 LQHSETSITCSPWIKNALE 128
           LQHSETSITC PW KNA E
Sbjct: 121 LQHSETSITCFPWNKNAPE 139

[Close]

BLAST of ClCG06G007550 vs. NCBI nr
Match: gi|164449263|gb|ABY56092.1| (self-incompatibility protein 2 [Cucumis melo])

HSP 1 Score: 194.9 bits (494), Expect = 8.6e-47
Identity = 96/135 (71.11%), Postives = 107/135 (79.26%), Query Frame = 1


Query: 5   LALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESD 64
           +AL F M LLLPI LHATDELISLLPETTVTI+NEVGGPLLGIHCRSKQ    V+++ SD
Sbjct: 75  IALGFSMFLLLPISLHATDELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNVVSSD 134

Query: 65  RSYSFTFRPSLGMDS---------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHS 124
           +SYSF FRP++   +         +  PHYFTIYDFKRD KTCTNC+WLVYASGPCLQHS
Sbjct: 135 KSYSFNFRPNVWGTTLFYCVFEWVKGQPHYFTIYDFKRDGKTCTNCRWLVYASGPCLQHS 194

Query: 125 ETSITCSPWIKNALE 128
           ETSITC PW KNA E
Sbjct: 195 ETSITCFPWNKNAPE 209

[Close]

BLAST of ClCG06G007550 vs. NCBI nr
Match: gi|659114866|ref|XP_008457263.1| (PREDICTED: uncharacterized protein LOC103496988 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-20
Identity = 60/133 (45.11%), Postives = 82/133 (61.65%), Query Frame = 1


Query: 4   SLALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIES 63
           +L ++FL+L +L I L+A +ELISLLPETTVT  N++ G ++G+HCRSK     +HIIES
Sbjct: 48  NLIVIFLVLQILFIKLYADEELISLLPETTVTTSNKLAGLVIGVHCRSKDDDLGLHIIES 107

Query: 64  DRSYSFTFRPSLGMDSR---------SSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQH 122
           +RSYSF FRP++   ++            H FT Y+F RD   CT   W +Y  GPCL H
Sbjct: 108 ERSYSFHFRPNIWGTTQFTCSFQFVHGEIHNFTTYNFHRDINCCT---WKIYRDGPCLMH 167

[Close]

BLAST of ClCG06G007550 vs. NCBI nr
Match: gi|659128416|ref|XP_008464194.1| (PREDICTED: uncharacterized protein LOC103502132 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19
Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 1


Query: 19  LHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHIIESDRSYSFTFRPSLGMD 78
           ++  +ELISLLPETTVT IN++ G +LG+HCRSK     VHI+ES+ SYSF FRP++   
Sbjct: 60  VYVDEELISLLPETTVTTINKLVGQVLGVHCRSKDDDLGVHILESEHSYSFHFRPNIWGT 119

Query: 79  S---------RSSPHYFTIYDFKRDAKTCTNCKWLVYASGPCLQHSETSIT 118
           +         +   H FTIY+F RD   CTNC W +Y   PCL H   + T
Sbjct: 120 TQFTCNFQFVQGEMHNFTIYNFHRDINHCTNCTWEIYREIPCLMHPNNTET 170

[Close]

BLAST of ClCG06G007550 vs. NCBI nr
Match: gi|659082595|ref|XP_008441925.1| (PREDICTED: uncharacterized protein LOC103485919 [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 1.7e-18
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 1  MASSLALVFLMLLLLPICLHATDELISLLPETTVTIINEVGGPLLGIHCRSKQT---VHI 60
          M S LAL F M LLLPI L ATDELISLLPET VTI+NEVGGPLLGIHCRSKQ    V++
Sbjct: 1  MTSFLALEFSMFLLLPISLRATDELISLLPETIVTIVNEVGGPLLGIHCRSKQEDEGVNV 60

Query: 61 IESDRSYSFTFRPSL 73
          + S++SYSF  RP++
Sbjct: 61 VPSEKSYSFNVRPNI 75

The following BLAST results are available for this feature:

BLAST of ClCG06G007550 vs. TrEMBL


Match Name	E-value	Identity	Description
B0F817_CUCME	1.1e-48	71.94	Self-incompatibility protein 1 OS=Cucumis melo PE=4 SV=1	[more]
B0F818_CUCME	6.0e-47	71.11	Self-incompatibility protein 2 OS=Cucumis melo PE=4 SV=1	[more]
A0A0S3SB27_PHAAN	4.0e-11	36.92	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G124000 PE=...	[more]
A0A078DH16_BRANA	4.0e-11	32.81	BnaC08g00850D protein OS=Brassica napus GN=BnaC08g00850D PE=4 SV=1	[more]
A0A0D3DIV6_BRAOL	4.0e-11	32.81	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of ClCG06G007550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121590\|ref\|XP_008460735.1\|	1.6e-48	71.94	PREDICTED: uncharacterized protein LOC103499497 [Cucumis melo]	[more]
gi\|164449263\|gb\|ABY56092.1\|	8.6e-47	71.11	self-incompatibility protein 2 [Cucumis melo]	[more]
gi\|659114866\|ref\|XP_008457263.1\|	3.1e-20	45.11	PREDICTED: uncharacterized protein LOC103496988 [Cucumis melo]	[more]
gi\|659128416\|ref\|XP_008464194.1\|	1.5e-19	47.75	PREDICTED: uncharacterized protein LOC103502132 [Cucumis melo]	[more]
gi\|659082595\|ref\|XP_008441925.1\|	1.7e-18	69.33	PREDICTED: uncharacterized protein LOC103485919 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010264	Self-incomp_S1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G007550.1	ClCG06G007550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 33..121 score: 3.
None	No IPR available	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 1..127 score: 3.7
None	No IPR available	PANTHER	PTHR31232:SF5	GENOMIC DNA, CHROMOSOME 3, TAC CLONE:K14A17-RELATED	coord: 1..127 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG06G007550	Cla97C06G117280	Watermelon (97103) v2	wcgwmbB273
ClCG06G007550	Bhi12G001336	Wax gourd	wcgwgoB503

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G007550	Silver-seed gourd	carwcgB0221
ClCG06G007550	Silver-seed gourd	carwcgB0227
ClCG06G007550	Silver-seed gourd	carwcgB0936
ClCG06G007550	Silver-seed gourd	carwcgB1046
ClCG06G007550	Cucumber (Chinese Long) v3	cucwcgB161
ClCG06G007550	Cucumber (Chinese Long) v3	cucwcgB254
ClCG06G007550	Watermelon (97103) v2	wcgwmbB269
ClCG06G007550	Wax gourd	wcgwgoB494
ClCG06G007550	Watermelon (Charleston Gray)	wcgwcgB160
ClCG06G007550	Cucumber (Gy14) v1	cgywcgB452
ClCG06G007550	Cucurbita maxima (Rimu)	cmawcgB235
ClCG06G007550	Cucurbita maxima (Rimu)	cmawcgB328
ClCG06G007550	Cucurbita maxima (Rimu)	cmawcgB565
ClCG06G007550	Cucurbita maxima (Rimu)	cmawcgB745
ClCG06G007550	Cucurbita maxima (Rimu)	cmawcgB804
ClCG06G007550	Cucurbita moschata (Rifu)	cmowcgB221
ClCG06G007550	Cucurbita moschata (Rifu)	cmowcgB325
ClCG06G007550	Cucurbita moschata (Rifu)	cmowcgB746
ClCG06G007550	Cucurbita moschata (Rifu)	cmowcgB799
ClCG06G007550	Wild cucumber (PI 183967)	cpiwcgB255
ClCG06G007550	Cucumber (Chinese Long) v2	cuwcgB153
ClCG06G007550	Cucumber (Chinese Long) v2	cuwcgB246
ClCG06G007550	Melon (DHL92) v3.5.1	mewcgB388
ClCG06G007550	Melon (DHL92) v3.5.1	mewcgB441
ClCG06G007550	Watermelon (97103) v1	wcgwmB325
ClCG06G007550	Watermelon (97103) v1	wcgwmB331
ClCG06G007550	Watermelon (97103) v1	wcgwmB344
ClCG06G007550	Cucurbita pepo (Zucchini)	cpewcgB144
ClCG06G007550	Cucurbita pepo (Zucchini)	cpewcgB294
ClCG06G007550	Cucurbita pepo (Zucchini)	cpewcgB561
ClCG06G007550	Cucurbita pepo (Zucchini)	cpewcgB788
ClCG06G007550	Bottle gourd (USVL1VR-Ls)	lsiwcgB029
ClCG06G007550	Bottle gourd (USVL1VR-Ls)	lsiwcgB343
ClCG06G007550	Cucumber (Gy14) v2	cgybwcgB143
ClCG06G007550	Cucumber (Gy14) v2	cgybwcgB230
ClCG06G007550	Melon (DHL92) v3.6.1	medwcgB378
ClCG06G007550	Melon (DHL92) v3.6.1	medwcgB437