ClCG05G026720 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G026720
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	F-box protein SKIP5
Location	CG_Chr05 : 37921891 .. 37926018 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGAAGCTATGATTTGTTGGTCATCTGTTGAGTGAGTTCGGAGCTTCGTGTGGGGCTATGGCAGTCATAATCTGAAGGCCGATATGAGCCGAGTGGTAAAAGACCAGAGCCGGGTCGCCGTAGTTTCGATGGAAGAAAACAAGCAAAGAAAGTGGAAGAGAAAAGGCAGTTCATCCTCCTCGCCTTGTATTAACAATTTGGACGATGGCTGTCTAATGCATATTTTCAGCTTCCTTTCCCCCATACCAGGTACCTCTCTCTCACTCTCTCTCTGCAGCCGCGCCTCATATGTTTCAATTTGTTGTCTGAATGTCTATTCTTTCAATTTTTAGGGTTTCTACTTGAGGGTTTCTTTAGTTCCCTCCTCAAATTGCTTCTTTTGGCTGAAATTTAAGGGTTCTGCTGTTAATTCTCCAAATATGGGTGGTTTGCATTTTCTGCAAAGGAAAAAGAAAAAAAAAAAATGAAACGCTGTATCAAAAACCATGAAAGTGTACTTTTGCAACTTTTTGAGTACTTCTGGAAATGGATTGTGAAAAGAAGTTGGGGATTACTGTTTCTATGTATAAAGTGGATACTTATTTGTTTCAGCATATCTAAATCGAAAAGAGAGAAAAAAAAAAACTTATTTGAAGAGATGGAATGCTTAGCTTCTTTGGGTTGGTTCTAGCGGAGTCTATAATGAGCCTTATTAGTTTTCAGTATGTGTGGTTTAATAGAATTGATTATGAAGTGGGATGTTCTTTCCTTGGACTTTAGATGTGAATCGATTGGATATTTTGGTATGTGGTACAGAGGAGTCGTTTAGAAAATTAAGAACGTATGTGATTCAGAGGAGAATGTTCTTAAGTTGTAAACAAATTGTTTCTCTTCTGTGGCTTCTTCTTTTCCAATTTGATGACCTGGTCCAGTTTTTTTTTTTTTTTTTTTTTTTTTGGGCGGGGGGGGGGGGGGGGTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGTGCTGGGATGTCTGGTTGGAGAAGGGTACGAATTATTTTGGAGACAGAAGTGAAGATGTTGATGAAGGGGCTAAATAGTGTACTTACCGCTGTTCTAAGAATGTCATTTCATTGCATTTGTGTGTTTCTTTTACTTCTTCTCTATTCTAGTGAGCAATTTTTTCTATCATTAGCCTAGTGAAGTTGTAATAAAGTGGATCCCGCCTGTTTATTTCCATGGAGTTTCTGCCTTTTCTGTCACCTTTGCCATTGAGTTTGCAGATCGGTATAACACCGCGCTCGTTTGCCACAGATGGCGTTACTTGGCATGTCATCCTAGGCTGTGGCTGCGAGTAGAACGATCTATTAAAGATTTATCCGAGCCCGGAGTTTTCCCAACCATTGAGGCAGCCGTTGCTGCTGCTAGGTAAGTTTTGCATGTTTATGTTCATGTTTCTTAAGAGGGAAAATGAATAGAGCAAGTTGTTCATAGAGGCTGAATGGTTTTGTTCTGCATAGGCCTGGTGACACCATACTTATTGCAACAGGTGGAGTTCATTCTGCCTCTAACATTCAAATAACAAAACCACTTTGCTTGGTATATTCTATTTTCCCCCTTCTTTTAGTTCCTTGCAGTGAAATTTTACTCTTAGATCTTAATATATAGTTTAAATTTCATCCAATTGTCATGTCTCTGCAGAAATCATGTCTAGTCTGTGAATAATTTAAGTACCCTTCAAGACAAAAAGTGTCCTGTTATATATGTGGAAGGACTTGTTAATTCGTAACTAAGAAAAGTGAACTGTGTCGTTTCTTTTCAAAAAGAAAAGAAATGTGATCGGCATCTCTAAAAAGGTTGCTGCATGAAGCTAGAATGTCGGTTTGTGTTATTCAGCTTTAAAAAGGATGTTAGCAGAATTACCCTTTTCTTGTTGTAAGAAACTAAGAAATGATTGGATTGAACAACCTCAACCCTAGCTACAAAATATAACTGAAAAAAAGTTGCTCTGGGGAAGCCAGTTAGCTATTTGGGTTCTGCTATATGGTTTTAAAGTGAATCTTTCTGTGGTTTGGCCCTGCTGTAACAATTCAAATTAAGTACTTGTTTGAAGAGGCAATATTACTAAGATATTTCCCTGTACATGCTTTTAAATATTGGTGAAACGTGAAATAACGGATTCATGGTCCAGAGCTTTTAACTTTAAGATTTTAGCACCTTGTATACCTCAATTTATTCCATAATGTTATAGATTTTCACCTTTTCTCGGGCTTAATGTATGACGTGAAAGACTCATTTCATAAAGAATTTAAGTTTCACTATTTTCCATCATTTGATCTGAACTTAATATTTCAGATTGGTGGAGGTGAGGTTCCTGAGGAGACAACTCTTTTCTGTACTCGTGGTTCGGACAGGTACATAGCTGATAGCATATAATGTAATTTGCAATGGTGAATCCTATAGGTTTTCTCCCTCTTAACATTTCCAAGAGATCATTTATCATCACCCATTTCGACTTTCACTTACTATCGTTATTGGTGCCCCCTAATAGAATTCGATATTTACTTCTAGTGACTTCTCTCAATTCGTATACTTTCATTATTGGCTGTATTGCATATTCATCCAGCAGCCAGTCGGGGATAAGGGCTTACATAAACTTCTGTTTTTCATCTGGTTCAAATTCAATTTTGATTAAGAGAACTTCATATTTGTTTCATTTTGGTCACCAAAGTTCAAAATAGCCTTTAAACATTTAAGAAATAACCATTTTTCGTCATTTAACTTTTAGAAATTGTCATTTTGGTCTTTACTAGTCCTATGTTGCTAATATCCATTCACCCAATGGTTGTCGCAGGCAACCTATGGGGTTCAATGCACATCCCTATGTTAGCATGTACAACACACACTTGAGGCGTATGTGAACCGTATATTAAAAGCAAAGTAAAGAAAAAGACCAAAATAGTTGTTTTGTTTAAGTTGAGGGGCTAAAGTAGATATTTTGAAAGTTCAAGACAGGTGTTAGAAGATCTTGAAAGTTTAGAGGAACCAAAGGAGGATTTATGATTTTTAAAGGCAACTTATTAGGGACTTCCTGTGTCTTCTTAACAGTGCTTTGGAGTTCCTGTCTACCAGTAAACTTTCTAACTTAACAGTCAAGGTAGAACTTGGTTGCTGCTTGCTTCACAGGAAGGGAAGATTGATTATAGATGGATGTGTCCTCCAATGTGAGTCAAACCCTTTGGATTACCTATCATGCCCCATTGTTTGTACAGCAAGTCCAGATAAGTTATTGCCTTCCTCAGTGAAGGGTGGTTATACACATGGCATTTCTGTCTCGCACACTCGTATTGAGGGTGGTGCCAAGGCTGTCCTAACGAGTGACAACCTGGCATTACAGCATGTTCGAGTTATTTATGCTCGAACGGCTCTGTTCTTTTGGTTTGATGTTGAATACAAGTTATAATAATGCTCTTGTAATCTATTGGCAATGTGCCTTTGTTTCAACTTGTTAATCCTTTAGGCATGTTGTTATATTGTGATTATTTAACTTGTATTTTGTCTCTGTTTATGCTTGTCATAATCCCTTTCAATATAA

mRNA sequence

CAGGAAGCTATGATTTGTTGGTCATCTGTTGAGTGAGTTCGGAGCTTCGTGTGGGGCTATGGCAGTCATAATCTGAAGGCCGATATGAGCCGAGTGGTAAAAGACCAGAGCCGGGTCGCCGTAGTTTCGATGGAAGAAAACAAGCAAAGAAAGTGGAAGAGAAAAGGCAGTTCATCCTCCTCGCCTTGTATTAACAATTTGGACGATGGCTGTCTAATGCATATTTTCAGCTTCCTTTCCCCCATACCAGATCGGTATAACACCGCGCTCGTTTGCCACAGATGGCGTTACTTGGCATGTCATCCTAGGCTGTGGCTGCGAGTAGAACGATCTATTAAAGATTTATCCGAGCCCGGAGTTTTCCCAACCATTGAGGCAGCCGTTGCTGCTGCTAGGCCTGGTGACACCATACTTATTGCAACAGGTGGAGTTCATTCTGCCTCTAACATTCAAATAACAAAACCACTTTGCTTGATTGGTGGAGGTGAGGTTCCTGAGGAGACAACTCTTTTCTGTACTCGTGGTTCGGACAGTGCTTTGGAGTTCCTGTCTACCAGTAAACTTTCTAACTTAACAGTCAAGGTAGAACTTGGTTGCTGCTTGCTTCACAGGAAGGGAAGATTGATTATAGATGGATGTGTCCTCCAATGTGAGTCAAACCCTTTGGATTACCTATCATGCCCCATTGTTTGTACAGCAAGTCCAGATAAGTTATTGCCTTCCTCAGTGAAGGGTGGTTATACACATGGCATTTCTGTCTCGCACACTCGTATTGAGGGTGGTGCCAAGGCTGTCCTAACGAGTGACAACCTGGCATTACAGCATGTTCGAGTTATTTATGCTCGAACGGCTCTGTTCTTTTGGTTTGATGTTGAATACAAGTTATAATAATGCTCTTGTAATCTATTGGCAATGTGCCTTTGTTTCAACTTGTTAATCCTTTAGGCATGTTGTTATATTGTGATTATTTAACTTGTATTTTGTCTCTGTTTATGCTTGTCATAATCCCTTTCAATATAA

Coding sequence (CDS)

ATGAGCCGAGTGGTAAAAGACCAGAGCCGGGTCGCCGTAGTTTCGATGGAAGAAAACAAGCAAAGAAAGTGGAAGAGAAAAGGCAGTTCATCCTCCTCGCCTTGTATTAACAATTTGGACGATGGCTGTCTAATGCATATTTTCAGCTTCCTTTCCCCCATACCAGATCGGTATAACACCGCGCTCGTTTGCCACAGATGGCGTTACTTGGCATGTCATCCTAGGCTGTGGCTGCGAGTAGAACGATCTATTAAAGATTTATCCGAGCCCGGAGTTTTCCCAACCATTGAGGCAGCCGTTGCTGCTGCTAGGCCTGGTGACACCATACTTATTGCAACAGGTGGAGTTCATTCTGCCTCTAACATTCAAATAACAAAACCACTTTGCTTGATTGGTGGAGGTGAGGTTCCTGAGGAGACAACTCTTTTCTGTACTCGTGGTTCGGACAGTGCTTTGGAGTTCCTGTCTACCAGTAAACTTTCTAACTTAACAGTCAAGGTAGAACTTGGTTGCTGCTTGCTTCACAGGAAGGGAAGATTGATTATAGATGGATGTGTCCTCCAATGTGAGTCAAACCCTTTGGATTACCTATCATGCCCCATTGTTTGTACAGCAAGTCCAGATAAGTTATTGCCTTCCTCAGTGAAGGGTGGTTATACACATGGCATTTCTGTCTCGCACACTCGTATTGAGGGTGGTGCCAAGGCTGTCCTAACGAGTGACAACCTGGCATTACAGCATGTTCGAGTTATTTATGCTCGAACGGCTCTGTTCTTTTGGTTTGATGTTGAATACAAGTTATAA

Protein sequence

MSRVVKDQSRVAVVSMEENKQRKWKRKGSSSSSPCINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGEVPEETTLFCTRGSDSALEFLSTSKLSNLTVKVELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGISVSHTRIEGGAKAVLTSDNLALQHVRVIYARTALFFWFDVEYKL

Homology

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BLAST of ClCG05G026720 vs. Swiss-Prot
Match: SKIP5_ARATH (F-box protein SKIP5 OS=Arabidopsis thaliana GN=SKIP5 PE=1 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 4.7e-95
Identity = 170/255 (66.67%), Postives = 198/255 (77.65%), Query Frame = 1


Query: 21  QRKWKRKGSSSSSPCINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 80
           + K K++    S   +NNLDDGCLMHI SFLSPIPDRYNTALVCHRWRYLACHPRLWLRV
Sbjct: 20  ESKMKKRMKPYSLTSLNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 79

Query: 81  ERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGEVPEET 140
           +R +KDLS+PGVF  IE+AV+AARPGDTILI  GG +  SNIQI KPLCL+GGGE+P+ET
Sbjct: 80  DRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGNYRVSNIQIKKPLCLVGGGEIPDET 139

Query: 141 TLFCTRGSDSALEFLSTSKLSNLTVKVELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCP 200
           TL C RGSDSALE LST KL+NLTVK ELGCCLLHR GRL IDGCVLQCE+NPLD+LSCP
Sbjct: 140 TLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVLQCETNPLDHLSCP 199

Query: 201 IVCTASPDKL--------LPSSVKGGY-THGISVSHTRIEGGAKAVLTSDNLALQHVRVI 260
           IV TA  + +        +  +V G    + ++V  TRIEGGAKAV T  +L LQ VRV+
Sbjct: 200 IVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVSTRGDLVLQRVRVM 259

Query: 261 YARTALFFWFDVEYK 267
           Y++  L+FWFDV+Y+
Sbjct: 260 YSKAYLYFWFDVDYE 274

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BLAST of ClCG05G026720 vs. TrEMBL
Match: A0A0A0KRR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623720 PE=4 SV=1)

HSP 1 Score: 527.7 bits (1358), Expect = 8.2e-147
Identity = 254/267 (95.13%), Postives = 264/267 (98.88%), Query Frame = 1


Query: 1   MSRVVKDQSRVAVVSMEENKQRKWKRKGSSSSSPCINNLDDGCLMHIFSFLSPIPDRYNT 60
           MSRVVKDQSRVA+VSMEENKQRKWKRKG+SSSSP +N+LDDGCLMHIFSFLSPIPDRYNT
Sbjct: 6   MSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNT 65

Query: 61  ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 120
           ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS
Sbjct: 66  ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 125

Query: 121 NIQITKPLCLIGGGEVPEETTLFCTRGSDSALEFLSTSKLSNLTVKVELGCCLLHRKGRL 180
           NIQITKPLCLIGGGE+PEETTLFCTRGS+SALEFLSTSKLSNLTVK ELGCCLLHRKGRL
Sbjct: 126 NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL 185

Query: 181 IIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGISVSHTRIEGGAKAVLTS 240
           I+DGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHG+SVSHTRIEGGAKAVLTS
Sbjct: 186 IVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS 245

Query: 241 DNLALQHVRVIYARTALFFWFDVEYKL 268
           ++L LQHVRVIYARTALFFWFDVEYKL
Sbjct: 246 EDLTLQHVRVIYARTALFFWFDVEYKL 272

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BLAST of ClCG05G026720 vs. TrEMBL
Match: A0A0R0HHY6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G154400 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 2.4e-106
Identity = 190/251 (75.70%), Postives = 213/251 (84.86%), Query Frame = 1


Query: 18  ENKQRKWKR----KGSSSSSPCINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACH 77
           + ++++WKR    K SSSSS  INNLDDGCLMHIF+FL PIPDR+NTALVCHRW YLACH
Sbjct: 4   QQQKQQWKRSQRTKPSSSSSSHINNLDDGCLMHIFNFLPPIPDRFNTALVCHRWNYLACH 63

Query: 78  PRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGG 137
           PRLWLRV+RS+K+LSEPGVFP IE AV+A+RPGDTILIA GG H  +NIQI KPLCLIG 
Sbjct: 64  PRLWLRVDRSVKELSEPGVFPNIETAVSASRPGDTILIAAGGTHRVANIQIRKPLCLIGA 123

Query: 138 GEVPEETTLFCTRGSDSALEFLSTSKLSNLTVKVELGCCLLHRKGRLIIDGCVLQCESNP 197
           GEVP++TTL C+RGSDSALEFLST KL+NLTV+ ELGCCLLHRKGRL IDGC+LQCESNP
Sbjct: 124 GEVPDDTTLVCSRGSDSALEFLSTCKLANLTVRAELGCCLLHRKGRLTIDGCILQCESNP 183

Query: 198 LDYLSCPIVCTASPDKLLPSSVKGGYTHGISVSHTRIEGGAKAVLTSDNLALQHVRVIYA 257
           LDYLSCPIV TAS   +LPS  K     G+ VS TRIEGGAKAVLTS +LALQ VRVIYA
Sbjct: 184 LDYLSCPIVSTASSSVVLPSQTKSNNGDGVFVSQTRIEGGAKAVLTSGDLALQRVRVIYA 243

Query: 258 RTALFFWFDVE 265
           RT+L FWFDVE
Sbjct: 244 RTSLLFWFDVE 254

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BLAST of ClCG05G026720 vs. TrEMBL
Match: I1LLD0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 393.3 bits (1009), Expect = 2.4e-106
Identity = 190/251 (75.70%), Postives = 213/251 (84.86%), Query Frame = 1


Query: 18  ENKQRKWKR----KGSSSSSPCINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACH 77
           + ++++WKR    K SSSSS  INNLDDGCLMHIF+FL PIPDR+NTALVCHRW YLACH
Sbjct: 33  QQQKQQWKRSQRTKPSSSSSSHINNLDDGCLMHIFNFLPPIPDRFNTALVCHRWNYLACH 92

Query: 78  PRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGG 137
           PRLWLRV+RS+K+LSEPGVFP IE AV+A+RPGDTILIA GG H  +NIQI KPLCLIG 
Sbjct: 93  PRLWLRVDRSVKELSEPGVFPNIETAVSASRPGDTILIAAGGTHRVANIQIRKPLCLIGA 152

Query: 138 GEVPEETTLFCTRGSDSALEFLSTSKLSNLTVKVELGCCLLHRKGRLIIDGCVLQCESNP 197
           GEVP++TTL C+RGSDSALEFLST KL+NLTV+ ELGCCLLHRKGRL IDGC+LQCESNP
Sbjct: 153 GEVPDDTTLVCSRGSDSALEFLSTCKLANLTVRAELGCCLLHRKGRLTIDGCILQCESNP 212

Query: 198 LDYLSCPIVCTASPDKLLPSSVKGGYTHGISVSHTRIEGGAKAVLTSDNLALQHVRVIYA 257
           LDYLSCPIV TAS   +LPS  K     G+ VS TRIEGGAKAVLTS +LALQ VRVIYA
Sbjct: 213 LDYLSCPIVSTASSSVVLPSQTKSNNGDGVFVSQTRIEGGAKAVLTSGDLALQRVRVIYA 272

Query: 258 RTALFFWFDVE 265
           RT+L FWFDVE
Sbjct: 273 RTSLLFWFDVE 283

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BLAST of ClCG05G026720 vs. TrEMBL
Match: A0A067L7M8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24514 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 3.1e-106
Identity = 191/253 (75.49%), Postives = 216/253 (85.38%), Query Frame = 1


Query: 16  MEENKQRKWKRK--GSSSSSPCINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACH 75
           MEE  +RKWK+K   SSS+S  IN LDDGCLMHIFSFLSPIPDRYNTALVCHRW YLACH
Sbjct: 1   MEEEVKRKWKQKKPASSSNSSLINTLDDGCLMHIFSFLSPIPDRYNTALVCHRWHYLACH 60

Query: 76  PRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGG 135
           PRLWLRV+R++KDLSEPGV+P+IE AV+AARPGDTILI+ GG H ASNIQI KPLCLIGG
Sbjct: 61  PRLWLRVDRAVKDLSEPGVYPSIEMAVSAARPGDTILISAGGNHVASNIQINKPLCLIGG 120

Query: 136 GEVPEETTLFCTRGSDSALEFLSTSKLSNLTVKVELGCCLLHRKGRLIIDGCVLQCESNP 195
           GE+P++TTL C+RGSDSALEFLST KL+NLTVK ELGCCLLHR GRL IDGC+LQCESNP
Sbjct: 121 GELPDQTTLLCSRGSDSALEFLSTCKLANLTVKTELGCCLLHRSGRLTIDGCILQCESNP 180

Query: 196 LDYLSCPIVCTASPDKLLPSSVKGGYTHGISVSHTRIEGGAKAVLTSDNLALQHVRVIYA 255
           LDYLSCPIV TA  +++  SSVK     G+ VS TRIEGGAKAVLT  +LAL  VRVIY+
Sbjct: 181 LDYLSCPIVSTAGENEIFSSSVKTD-GDGVHVSQTRIEGGAKAVLTKGDLALHRVRVIYS 240

Query: 256 RTALFFWFDVEYK 267
           R  ++FWFDVE+K
Sbjct: 241 RAYVYFWFDVEHK 252

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BLAST of ClCG05G026720 vs. TrEMBL
Match: D7TXB8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0139g00260 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 4.1e-106
Identity = 198/257 (77.04%), Postives = 222/257 (86.38%), Query Frame = 1


Query: 16  MEENKQRKWK-RKGSSSSSP-----CINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRY 75
           MEE  +RKWK RK S+SS P      I+NLDDGCLMHIFSFLSPIPDRYNTALVCHRW Y
Sbjct: 1   MEE--KRKWKHRKSSTSSIPNSNSSSIHNLDDGCLMHIFSFLSPIPDRYNTALVCHRWHY 60

Query: 76  LACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLC 135
           LACHPRLWLRV+RS+KD SEPGVFP+IE AV+AARPGDTILIA GG H ASNIQI KPLC
Sbjct: 61  LACHPRLWLRVDRSVKDSSEPGVFPSIEMAVSAARPGDTILIAAGGSHLASNIQIKKPLC 120

Query: 136 LIGGGEVPEETTLFCTRGSDSALEFLSTSKLSNLTVKVELGCCLLHRKGRLIIDGCVLQC 195
           LIGGGE+P++TTL C+RGSDSALEFLST K++NLTVK ELGCCLLHR GRL IDGC+LQC
Sbjct: 121 LIGGGELPDDTTLLCSRGSDSALEFLSTCKVANLTVKAELGCCLLHRSGRLTIDGCILQC 180

Query: 196 ESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHG--ISVSHTRIEGGAKAVLTSDNLALQH 255
           ESNPLDYLSCPIV TA+  ++L SSVK   +HG  +SVS TRIEGGAKAV+TS +LALQ 
Sbjct: 181 ESNPLDYLSCPIVSTAAGPEILTSSVK---SHGDSVSVSRTRIEGGAKAVVTSGSLALQR 240

Query: 256 VRVIYARTALFFWFDVE 265
           VRVIYART++FFWFDV+
Sbjct: 241 VRVIYARTSIFFWFDVD 252

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BLAST of ClCG05G026720 vs. TAIR10
Match: AT3G54480.1 (AT3G54480.1 SKP1/ASK-interacting protein 5)

HSP 1 Score: 349.0 bits (894), Expect = 2.6e-96
Identity = 170/255 (66.67%), Postives = 198/255 (77.65%), Query Frame = 1


Query: 21  QRKWKRKGSSSSSPCINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 80
           + K K++    S   +NNLDDGCLMHI SFLSPIPDRYNTALVCHRWRYLACHPRLWLRV
Sbjct: 20  ESKMKKRMKPYSLTSLNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 79

Query: 81  ERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGEVPEET 140
           +R +KDLS+PGVF  IE+AV+AARPGDTILI  GG +  SNIQI KPLCL+GGGE+P+ET
Sbjct: 80  DRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGNYRVSNIQIKKPLCLVGGGEIPDET 139

Query: 141 TLFCTRGSDSALEFLSTSKLSNLTVKVELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCP 200
           TL C RGSDSALE LST KL+NLTVK ELGCCLLHR GRL IDGCVLQCE+NPLD+LSCP
Sbjct: 140 TLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVLQCETNPLDHLSCP 199

Query: 201 IVCTASPDKL--------LPSSVKGGY-THGISVSHTRIEGGAKAVLTSDNLALQHVRVI 260
           IV TA  + +        +  +V G    + ++V  TRIEGGAKAV T  +L LQ VRV+
Sbjct: 200 IVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVSTRGDLVLQRVRVM 259

Query: 261 YARTALFFWFDVEYK 267
           Y++  L+FWFDV+Y+
Sbjct: 260 YSKAYLYFWFDVDYE 274

[Close]

BLAST of ClCG05G026720 vs. NCBI nr
Match: gi|449449332|ref|XP_004142419.1| (PREDICTED: F-box protein SKIP5 isoform X1 [Cucumis sativus])

HSP 1 Score: 527.7 bits (1358), Expect = 1.2e-146
Identity = 254/267 (95.13%), Postives = 264/267 (98.88%), Query Frame = 1


Query: 1   MSRVVKDQSRVAVVSMEENKQRKWKRKGSSSSSPCINNLDDGCLMHIFSFLSPIPDRYNT 60
           MSRVVKDQSRVA+VSMEENKQRKWKRKG+SSSSP +N+LDDGCLMHIFSFLSPIPDRYNT
Sbjct: 6   MSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNT 65

Query: 61  ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 120
           ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS
Sbjct: 66  ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 125

Query: 121 NIQITKPLCLIGGGEVPEETTLFCTRGSDSALEFLSTSKLSNLTVKVELGCCLLHRKGRL 180
           NIQITKPLCLIGGGE+PEETTLFCTRGS+SALEFLSTSKLSNLTVK ELGCCLLHRKGRL
Sbjct: 126 NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL 185

Query: 181 IIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGISVSHTRIEGGAKAVLTS 240
           I+DGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHG+SVSHTRIEGGAKAVLTS
Sbjct: 186 IVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS 245

Query: 241 DNLALQHVRVIYARTALFFWFDVEYKL 268
           ++L LQHVRVIYARTALFFWFDVEYKL
Sbjct: 246 EDLTLQHVRVIYARTALFFWFDVEYKL 272

[Close]

BLAST of ClCG05G026720 vs. NCBI nr
Match: gi|659092178|ref|XP_008446937.1| (PREDICTED: F-box protein SKIP5 isoform X1 [Cucumis melo])

HSP 1 Score: 524.2 bits (1349), Expect = 1.3e-145
Identity = 252/267 (94.38%), Postives = 263/267 (98.50%), Query Frame = 1


Query: 1   MSRVVKDQSRVAVVSMEENKQRKWKRKGSSSSSPCINNLDDGCLMHIFSFLSPIPDRYNT 60
           MSRVVKDQSRVA+VSMEENKQRKWKRKG+SSSSP +N+LDDGCLMHIFSFLSPIPDRYNT
Sbjct: 6   MSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNT 65

Query: 61  ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 120
           ALVCHRWRYLACHPRLWLRVER+IKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS
Sbjct: 66  ALVCHRWRYLACHPRLWLRVERTIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 125

Query: 121 NIQITKPLCLIGGGEVPEETTLFCTRGSDSALEFLSTSKLSNLTVKVELGCCLLHRKGRL 180
           NIQITKPLCLIGGGE+PEETTLFCTRGS+SALEFLSTSKLSNLTVK ELGCCLLHRKGRL
Sbjct: 126 NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL 185

Query: 181 IIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGISVSHTRIEGGAKAVLTS 240
           I+DGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHG+SVSHTRIEGGAKAVLTS
Sbjct: 186 IVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS 245

Query: 241 DNLALQHVRVIYARTALFFWFDVEYKL 268
           ++L LQHVRVIYARTAL FWFDVEYKL
Sbjct: 246 EDLTLQHVRVIYARTALLFWFDVEYKL 272

[Close]

BLAST of ClCG05G026720 vs. NCBI nr
Match: gi|778706759|ref|XP_011655907.1| (PREDICTED: F-box protein SKIP5 isoform X2 [Cucumis sativus])

HSP 1 Score: 426.0 bits (1094), Expect = 4.8e-116
Identity = 205/219 (93.61%), Postives = 212/219 (96.80%), Query Frame = 1


Query: 49  SFLSPIPDRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDT 108
           +F     DRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDT
Sbjct: 15  TFAIEFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDT 74

Query: 109 ILIATGGVHSASNIQITKPLCLIGGGEVPEETTLFCTRGSDSALEFLSTSKLSNLTVKVE 168
           ILIATGGVHSASNIQITKPLCLIGGGE+PEETTLFCTRGS+SALEFLSTSKLSNLTVK E
Sbjct: 75  ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE 134

Query: 169 LGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGISVSHT 228
           LGCCLLHRKGRLI+DGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHG+SVSHT
Sbjct: 135 LGCCLLHRKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHT 194

Query: 229 RIEGGAKAVLTSDNLALQHVRVIYARTALFFWFDVEYKL 268
           RIEGGAKAVLTS++L LQHVRVIYARTALFFWFDVEYKL
Sbjct: 195 RIEGGAKAVLTSEDLTLQHVRVIYARTALFFWFDVEYKL 233

[Close]

BLAST of ClCG05G026720 vs. NCBI nr
Match: gi|659092180|ref|XP_008446939.1| (PREDICTED: F-box protein SKIP5 isoform X2 [Cucumis melo])

HSP 1 Score: 422.5 bits (1085), Expect = 5.3e-115
Identity = 203/219 (92.69%), Postives = 211/219 (96.35%), Query Frame = 1


Query: 49  SFLSPIPDRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDT 108
           +F     DRYNTALVCHRWRYLACHPRLWLRVER+IKDLSEPGVFPTIEAAVAAARPGDT
Sbjct: 15  TFAIEFADRYNTALVCHRWRYLACHPRLWLRVERTIKDLSEPGVFPTIEAAVAAARPGDT 74

Query: 109 ILIATGGVHSASNIQITKPLCLIGGGEVPEETTLFCTRGSDSALEFLSTSKLSNLTVKVE 168
           ILIATGGVHSASNIQITKPLCLIGGGE+PEETTLFCTRGS+SALEFLSTSKLSNLTVK E
Sbjct: 75  ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE 134

Query: 169 LGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGISVSHT 228
           LGCCLLHRKGRLI+DGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHG+SVSHT
Sbjct: 135 LGCCLLHRKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHT 194

Query: 229 RIEGGAKAVLTSDNLALQHVRVIYARTALFFWFDVEYKL 268
           RIEGGAKAVLTS++L LQHVRVIYARTAL FWFDVEYKL
Sbjct: 195 RIEGGAKAVLTSEDLTLQHVRVIYARTALLFWFDVEYKL 233

[Close]

BLAST of ClCG05G026720 vs. NCBI nr
Match: gi|571486422|ref|XP_006590332.1| (PREDICTED: uncharacterized protein LOC100808414 isoform X1 [Glycine max])

HSP 1 Score: 393.3 bits (1009), Expect = 3.4e-106
Identity = 190/251 (75.70%), Postives = 213/251 (84.86%), Query Frame = 1


Query: 18  ENKQRKWKR----KGSSSSSPCINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACH 77
           + ++++WKR    K SSSSS  INNLDDGCLMHIF+FL PIPDR+NTALVCHRW YLACH
Sbjct: 4   QQQKQQWKRSQRTKPSSSSSSHINNLDDGCLMHIFNFLPPIPDRFNTALVCHRWNYLACH 63

Query: 78  PRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGG 137
           PRLWLRV+RS+K+LSEPGVFP IE AV+A+RPGDTILIA GG H  +NIQI KPLCLIG 
Sbjct: 64  PRLWLRVDRSVKELSEPGVFPNIETAVSASRPGDTILIAAGGTHRVANIQIRKPLCLIGA 123

Query: 138 GEVPEETTLFCTRGSDSALEFLSTSKLSNLTVKVELGCCLLHRKGRLIIDGCVLQCESNP 197
           GEVP++TTL C+RGSDSALEFLST KL+NLTV+ ELGCCLLHRKGRL IDGC+LQCESNP
Sbjct: 124 GEVPDDTTLVCSRGSDSALEFLSTCKLANLTVRAELGCCLLHRKGRLTIDGCILQCESNP 183

Query: 198 LDYLSCPIVCTASPDKLLPSSVKGGYTHGISVSHTRIEGGAKAVLTSDNLALQHVRVIYA 257
           LDYLSCPIV TAS   +LPS  K     G+ VS TRIEGGAKAVLTS +LALQ VRVIYA
Sbjct: 184 LDYLSCPIVSTASSSVVLPSQTKSNNGDGVFVSQTRIEGGAKAVLTSGDLALQRVRVIYA 243

Query: 258 RTALFFWFDVE 265
           RT+L FWFDVE
Sbjct: 244 RTSLLFWFDVE 254

The following BLAST results are available for this feature:

BLAST of ClCG05G026720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKIP5_ARATH	4.7e-95	66.67	F-box protein SKIP5 OS=Arabidopsis thaliana GN=SKIP5 PE=1 SV=1	[more]

BLAST of ClCG05G026720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRR7_CUCSA	8.2e-147	95.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623720 PE=4 SV=1	[more]
A0A0R0HHY6_SOYBN	2.4e-106	75.70	Uncharacterized protein OS=Glycine max GN=GLYMA_11G154400 PE=4 SV=1	[more]
I1LLD0_SOYBN	2.4e-106	75.70	Uncharacterized protein OS=Glycine max PE=4 SV=2	[more]
A0A067L7M8_JATCU	3.1e-106	75.49	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24514 PE=4 SV=1	[more]
D7TXB8_VITVI	4.1e-106	77.04	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0139g00260 PE=4 SV=...	[more]

BLAST of ClCG05G026720 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54480.1	2.6e-96	66.67	SKP1/ASK-interacting protein 5	[more]

BLAST of ClCG05G026720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449332\|ref\|XP_004142419.1\|	1.2e-146	95.13	PREDICTED: F-box protein SKIP5 isoform X1 [Cucumis sativus]	[more]
gi\|659092178\|ref\|XP_008446937.1\|	1.3e-145	94.38	PREDICTED: F-box protein SKIP5 isoform X1 [Cucumis melo]	[more]
gi\|778706759\|ref\|XP_011655907.1\|	4.8e-116	93.61	PREDICTED: F-box protein SKIP5 isoform X2 [Cucumis sativus]	[more]
gi\|659092180\|ref\|XP_008446939.1\|	5.3e-115	92.69	PREDICTED: F-box protein SKIP5 isoform X2 [Cucumis melo]	[more]
gi\|571486422\|ref\|XP_006590332.1\|	3.4e-106	75.70	PREDICTED: uncharacterized protein LOC100808414 isoform X1 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G026720.1	ClCG05G026720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 43..80 score: 5.
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 39..80 score: 0.
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 22..90 score: 4.32
IPR011050	Pectin lyase fold/virulence factor	unknown	SSF51126	Pectin lyase-like	coord: 91..258 score: 5.89
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 92..186 score: 5.
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 36..77 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G026720	Csa5G623720	Cucumber (Chinese Long) v2	cuwcgB390
ClCG05G026720	MELO3C012462	Melon (DHL92) v3.5.1	mewcgB063
ClCG05G026720	Cla009944	Watermelon (97103) v1	wcgwmB285
ClCG05G026720	Cla97C05G108990	Watermelon (97103) v2	wcgwmbB229
ClCG05G026720	Bhi06G000889	Wax gourd	wcgwgoB425
ClCG05G026720	CSPI05G27510	Wild cucumber (PI 183967)	cpiwcgB408
ClCG05G026720	Cucsa.308050	Cucumber (Gy14) v1	cgywcgB531
ClCG05G026720	Cp4.1LG09g04410	Cucurbita pepo (Zucchini)	cpewcgB042
ClCG05G026720	CsGy5G026900	Cucumber (Gy14) v2	cgybwcgB355
ClCG05G026720	MELO3C012462.2	Melon (DHL92) v3.6.1	medwcgB062
ClCG05G026720	CsaV3_5G036650	Cucumber (Chinese Long) v3	cucwcgB411

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G026720	Cucurbita pepo (Zucchini)	cpewcgB396
ClCG05G026720	Bottle gourd (USVL1VR-Ls)	lsiwcgB291
ClCG05G026720	Silver-seed gourd	carwcgB0701
ClCG05G026720	Silver-seed gourd	carwcgB0814
ClCG05G026720	Cucurbita maxima (Rimu)	cmawcgB367
ClCG05G026720	Cucurbita maxima (Rimu)	cmawcgB661
ClCG05G026720	Cucurbita moschata (Rifu)	cmowcgB361
ClCG05G026720	Cucurbita moschata (Rifu)	cmowcgB662