ClCG05G026180 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGCTCTTCTTCTTCTTCTTCTTCTTCAGCTCCAATACTCTTGAATTACCCATTTCCTCAAAACTGCAACCTTCACAAGCTTCAAATATGACAACAGTAAGATTCCACTTTGCCCATTTTTGTGTCATGCTTGCTATTACTTGTTTGCCTTGTTTTTTTTTCGTTGTTTTCCATTTCTGATTTGTTCTTTTTGCAGGCTCAGAGGGGTCCGTTTCTCCCAAAATTTGGTGAGTGGGATGAAAAAAATCCTGCTGCAGCTGAAGGATTCACAGTGATTTTCGACAGGGCACGAGATAATAAGAAGAATGGAGGAGGAACTGGAACTCCAAATAATGTGATACCACAGCAAAACCAAAATCAATACCAAAATAAAAAACATGAAGCTGCTAAGAAGAATCACGAACACAAGTATCCAAGAAAGCAGGTTTGCCTTGTTAAGTTCTGTTTTGTTTTGCACCCCTCTTCTTCCTTATATCGGGAAAAATCTCTTACTACTACTACCGCACATATGAGAAATTAAAAGAAAACAATAAAACTAAAAACACAAGAATTAACATGAAAAAAATTCAAACCGGAGAAAGAACCACGAACCAGACAAATTTTACTATGTAAAAGATTATTACAATCACATTGAAATCTCTCCCCGACTCCAATTACAACAACATTTTCTCAAAGTGTTATTCCACTCACGCAATGGAACTAGTATACCAAGCTTAAAATTGGGATGATTGGAAAACAGAGATATAAACTCCTTTTATAGTGTTCGGAAGCCCATCACTCTTTGGAATCTTTTAGAGGTGGACAACTGCACTTCTAATATCTCATAAAAACCCAACATCACTTTTACAACATACATTTTTCTTCCTAACCATCTGGTTTTCTTTGTTGCAGAAAGGATGGAATTGCTGCTTTTGGTAGCCTTTTTGTGACTGAAAGAACAAAATTCTTCTGTTTGTGGTGGCTTTTTGAGTATTGATGGATGCTGTAGATTCAATTTATTGTGTGTATAAAGTTTTTGGAAACTTTTGATGGGGTTTTCTTTCTTTTCATTACATTAATTAAGCTTCTTGGGT AGCTCTTCTTCTTCTTCTTCTTCTTCAGCTCCAATACTCTTGAATTACCCATTTCCTCAAAACTGCAACCTTCACAAGCTTCAAATATGACAACAGCTCAGAGGGGTCCGTTTCTCCCAAAATTTGGTGAGTGGGATGAAAAAAATCCTGCTGCAGCTGAAGGATTCACAGTGATTTTCGACAGGGCACGAGATAATAAGAAGAATGGAGGAGGAACTGGAACTCCAAATAATGTGATACCACAGCAAAACCAAAATCAATACCAAAATAAAAAACATGAAGCTGCTAAGAAGAATCACGAACACAAGTATCCAAGAAAGCAGAAAGGATGGAATTGCTGCTTTTGGTAGCCTTTTTGTGACTGAAAGAACAAAATTCTTCTGTTTGTGGTGGCTTTTTGAGTATTGATGGATGCTGTAGATTCAATTTATTGTGTGTATAAAGTTTTTGGAAACTTTTGATGGGGTTTTCTTTCTTTTCATTACATTAATTAAGCTTCTTGGGT ATGACAACAGCTCAGAGGGGTCCGTTTCTCCCAAAATTTGGTGAGTGGGATGAAAAAAATCCTGCTGCAGCTGAAGGATTCACAGTGATTTTCGACAGGGCACGAGATAATAAGAAGAATGGAGGAGGAACTGGAACTCCAAATAATGTGATACCACAGCAAAACCAAAATCAATACCAAAATAAAAAACATGAAGCTGCTAAGAAGAATCACGAACACAAGTATCCAAGAAAGCAGAAAGGATGGAATTGCTGCTTTTGGTAG MTTAQRGPFLPKFGEWDEKNPAAAEGFTVIFDRARDNKKNGGGTGTPNNVIPQQNQNQYQNKKHEAAKKNHEHKYPRKQKGWNCCFW
BLAST of ClCG05G026180 vs. TrEMBL
Match: A0A0A0KTF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G591770 PE=4 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 5.7e-33 Identity = 67/87 (77.01%), Postives = 75/87 (86.21%), Query Frame = 1
BLAST of ClCG05G026180 vs. TrEMBL
Match: A0A0J8CCN4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g108820 PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 2.3e-13 Identity = 47/95 (49.47%), Postives = 56/95 (58.95%), Query Frame = 1
BLAST of ClCG05G026180 vs. TrEMBL
Match: V4L5T8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011071mg PE=4 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 3.9e-13 Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 1
BLAST of ClCG05G026180 vs. TrEMBL
Match: A0A087GDU0_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G464100 PE=4 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 2.5e-12 Identity = 41/86 (47.67%), Postives = 55/86 (63.95%), Query Frame = 1
BLAST of ClCG05G026180 vs. TrEMBL
Match: A0A087GDU1_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G464100 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 4.3e-12 Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 1
BLAST of ClCG05G026180 vs. TAIR10
Match: AT5G63270.1 (AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein) HSP 1 Score: 75.1 bits (183), Expect = 2.4e-14 Identity = 39/81 (48.15%), Postives = 48/81 (59.26%), Query Frame = 1
BLAST of ClCG05G026180 vs. TAIR10
Match: AT3G48450.1 (AT3G48450.1 RPM1-interacting protein 4 (RIN4) family protein) HSP 1 Score: 68.9 bits (167), Expect = 1.7e-12 Identity = 35/87 (40.23%), Postives = 44/87 (50.57%), Query Frame = 1
BLAST of ClCG05G026180 vs. TAIR10
Match: AT2G04410.1 (AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein) HSP 1 Score: 64.7 bits (156), Expect = 3.2e-11 Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1
BLAST of ClCG05G026180 vs. TAIR10
Match: AT5G55850.2 (AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein) HSP 1 Score: 63.9 bits (154), Expect = 5.5e-11 Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 1
BLAST of ClCG05G026180 vs. TAIR10
Match: AT5G40645.1 (AT5G40645.1 RPM1-interacting protein 4 (RIN4) family protein) HSP 1 Score: 54.7 bits (130), Expect = 3.3e-08 Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1
BLAST of ClCG05G026180 vs. NCBI nr
Match: gi|449435021|ref|XP_004135294.1| (PREDICTED: RPM1-interacting protein 4 [Cucumis sativus]) HSP 1 Score: 147.9 bits (372), Expect = 8.2e-33 Identity = 67/87 (77.01%), Postives = 75/87 (86.21%), Query Frame = 1
BLAST of ClCG05G026180 vs. NCBI nr
Match: gi|659090596|ref|XP_008446098.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis melo]) HSP 1 Score: 141.0 bits (354), Expect = 1.0e-30 Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 1
BLAST of ClCG05G026180 vs. NCBI nr
Match: gi|731333125|ref|XP_010677565.1| (PREDICTED: RPM1-interacting protein 4-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 82.8 bits (203), Expect = 3.2e-13 Identity = 47/95 (49.47%), Postives = 56/95 (58.95%), Query Frame = 1
BLAST of ClCG05G026180 vs. NCBI nr
Match: gi|567188976|ref|XP_006404257.1| (hypothetical protein EUTSA_v10011071mg [Eutrema salsugineum]) HSP 1 Score: 82.0 bits (201), Expect = 5.5e-13 Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 1
BLAST of ClCG05G026180 vs. NCBI nr
Match: gi|743803601|ref|XP_010926961.1| (PREDICTED: RPM1-interacting protein 4-like isoform X2 [Elaeis guineensis]) HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12 Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |