ClCG05G026180 (gene) Watermelon (Charleston Gray)

NameClCG05G026180
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRPM1-interacting protein 4 (RIN4) family protein LENGTH=80
LocationCG_Chr05 : 37452655 .. 37453726 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTCTTCTTCTTCTTCTTCTTCTTCAGCTCCAATACTCTTGAATTACCCATTTCCTCAAAACTGCAACCTTCACAAGCTTCAAATATGACAACAGTAAGATTCCACTTTGCCCATTTTTGTGTCATGCTTGCTATTACTTGTTTGCCTTGTTTTTTTTTCGTTGTTTTCCATTTCTGATTTGTTCTTTTTGCAGGCTCAGAGGGGTCCGTTTCTCCCAAAATTTGGTGAGTGGGATGAAAAAAATCCTGCTGCAGCTGAAGGATTCACAGTGATTTTCGACAGGGCACGAGATAATAAGAAGAATGGAGGAGGAACTGGAACTCCAAATAATGTGATACCACAGCAAAACCAAAATCAATACCAAAATAAAAAACATGAAGCTGCTAAGAAGAATCACGAACACAAGTATCCAAGAAAGCAGGTTTGCCTTGTTAAGTTCTGTTTTGTTTTGCACCCCTCTTCTTCCTTATATCGGGAAAAATCTCTTACTACTACTACCGCACATATGAGAAATTAAAAGAAAACAATAAAACTAAAAACACAAGAATTAACATGAAAAAAATTCAAACCGGAGAAAGAACCACGAACCAGACAAATTTTACTATGTAAAAGATTATTACAATCACATTGAAATCTCTCCCCGACTCCAATTACAACAACATTTTCTCAAAGTGTTATTCCACTCACGCAATGGAACTAGTATACCAAGCTTAAAATTGGGATGATTGGAAAACAGAGATATAAACTCCTTTTATAGTGTTCGGAAGCCCATCACTCTTTGGAATCTTTTAGAGGTGGACAACTGCACTTCTAATATCTCATAAAAACCCAACATCACTTTTACAACATACATTTTTCTTCCTAACCATCTGGTTTTCTTTGTTGCAGAAAGGATGGAATTGCTGCTTTTGGTAGCCTTTTTGTGACTGAAAGAACAAAATTCTTCTGTTTGTGGTGGCTTTTTGAGTATTGATGGATGCTGTAGATTCAATTTATTGTGTGTATAAAGTTTTTGGAAACTTTTGATGGGGTTTTCTTTCTTTTCATTACATTAATTAAGCTTCTTGGGT

mRNA sequence

AGCTCTTCTTCTTCTTCTTCTTCTTCAGCTCCAATACTCTTGAATTACCCATTTCCTCAAAACTGCAACCTTCACAAGCTTCAAATATGACAACAGCTCAGAGGGGTCCGTTTCTCCCAAAATTTGGTGAGTGGGATGAAAAAAATCCTGCTGCAGCTGAAGGATTCACAGTGATTTTCGACAGGGCACGAGATAATAAGAAGAATGGAGGAGGAACTGGAACTCCAAATAATGTGATACCACAGCAAAACCAAAATCAATACCAAAATAAAAAACATGAAGCTGCTAAGAAGAATCACGAACACAAGTATCCAAGAAAGCAGAAAGGATGGAATTGCTGCTTTTGGTAGCCTTTTTGTGACTGAAAGAACAAAATTCTTCTGTTTGTGGTGGCTTTTTGAGTATTGATGGATGCTGTAGATTCAATTTATTGTGTGTATAAAGTTTTTGGAAACTTTTGATGGGGTTTTCTTTCTTTTCATTACATTAATTAAGCTTCTTGGGT

Coding sequence (CDS)

ATGACAACAGCTCAGAGGGGTCCGTTTCTCCCAAAATTTGGTGAGTGGGATGAAAAAAATCCTGCTGCAGCTGAAGGATTCACAGTGATTTTCGACAGGGCACGAGATAATAAGAAGAATGGAGGAGGAACTGGAACTCCAAATAATGTGATACCACAGCAAAACCAAAATCAATACCAAAATAAAAAACATGAAGCTGCTAAGAAGAATCACGAACACAAGTATCCAAGAAAGCAGAAAGGATGGAATTGCTGCTTTTGGTAG

Protein sequence

MTTAQRGPFLPKFGEWDEKNPAAAEGFTVIFDRARDNKKNGGGTGTPNNVIPQQNQNQYQNKKHEAAKKNHEHKYPRKQKGWNCCFW
BLAST of ClCG05G026180 vs. TrEMBL
Match: A0A0A0KTF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G591770 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.7e-33
Identity = 67/87 (77.01%), Postives = 75/87 (86.21%), Query Frame = 1

Query: 1  MTTAQRGPFLPKFGEWDEKNPAAAEGFTVIFDRARDNKKNGGGTGTPNNVIPQQNQNQYQ 60
          M +AQ+GPFLPKFG+WDE+NPAAAEGFTVIF+RARDNKKNGG  GTPNNVIP QNQ+Q  
Sbjct: 1  MASAQKGPFLPKFGDWDEQNPAAAEGFTVIFNRARDNKKNGGAAGTPNNVIPPQNQSQ-- 60

Query: 61 NKKHEAAKKNHEHKYPRKQKGWNCCFW 88
            K+E AKKN +HKYPRKQKGW  CFW
Sbjct: 61 --KYEPAKKNQKHKYPRKQKGWCGCFW 83

BLAST of ClCG05G026180 vs. TrEMBL
Match: A0A0J8CCN4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g108820 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.3e-13
Identity = 47/95 (49.47%), Postives = 56/95 (58.95%), Query Frame = 1

Query: 3  TAQRGPFLPKFGEWDEKNPAAAEGFTVIFDRARDNKK-NG---GGTGTPNNVIPQQNQNQ 62
          T  RG  LPKFGEWD  NPA+AEGFTVIF++ARD KK NG   GG G P      QN N 
Sbjct: 5  TNARGRPLPKFGEWDVNNPASAEGFTVIFNKARDQKKTNGTAVGGIGGPQKF--NQNINN 64

Query: 63 YQNKKHEAAKKNHEHKY------PRKQKGWNCCFW 88
            N+  +   ++H+HKY       R  K W CCF+
Sbjct: 65 VNNQHKQDYDQDHKHKYKQVDHQQRGSKKWLCCFY 97

BLAST of ClCG05G026180 vs. TrEMBL
Match: V4L5T8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011071mg PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.9e-13
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 1

Query: 1  MTTAQRGPFLPKFGEWDEKNPAAAEGFTVIFDRARDNK--KNGGGTGTPNNVIPQQNQNQ 60
          M T  +G  LPKFGEWD  NPA+AEGFTVIF++ARD+K  K     G  + V PQ N   
Sbjct: 1  MATGNKGRQLPKFGEWDASNPASAEGFTVIFNKARDDKKTKKTAVAGPESLVSPQINDES 60

Query: 61 YQNKKHEAAKKNHEHKYPRKQKGWNC 85
          +QN KH     N + + PR++K W C
Sbjct: 61 HQNNKHH---NNRKSQTPREKKKWLC 83

BLAST of ClCG05G026180 vs. TrEMBL
Match: A0A087GDU0_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G464100 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.5e-12
Identity = 41/86 (47.67%), Postives = 55/86 (63.95%), Query Frame = 1

Query: 1  MTTAQRGPFLPKFGEWDEKNPAAAEGFTVIFDRARDNKKNGGGTGT-PNNVI-PQQNQNQ 60
          M+T  +G  LPKFGEWD  NPA+AEGFTVIF +A D KK    +G  PN+++ PQ+NQN 
Sbjct: 1  MSTENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNS 60

Query: 61 YQNKKHEAAKKNHEHKYPRKQKGWNC 85
           QN +H++       K  + +K W C
Sbjct: 61 DQNNQHDS-------KNSKSKKKWLC 79

BLAST of ClCG05G026180 vs. TrEMBL
Match: A0A087GDU1_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G464100 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.3e-12
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 1

Query: 1  MTTAQRGPFLPKFGEWDEKNPAAAEGFTVIFDRARDNKKNGGGTGT-PNNVI-PQQNQNQ 60
          M+T  +G  LPKFGEWD  NPA+AEGFTVIF +A D KK    +G  PN+++ PQ+NQN 
Sbjct: 1  MSTENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNS 60

Query: 61 YQNKKHEAAKKNHEHKYPRKQKGWNC 85
           QN +H++  KN       K K W C
Sbjct: 61 DQNNQHDS--KN------SKSKKWLC 78

BLAST of ClCG05G026180 vs. TAIR10
Match: AT5G63270.1 (AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-14
Identity = 39/81 (48.15%), Postives = 48/81 (59.26%), Query Frame = 1

Query: 6  RGPFLPKFGEWDEKNPAAAEGFTVIFDRARDNKKNGGGTGT-PNNVI-PQQNQNQYQNKK 65
          +G  LPKFGEWD  NPA+AEGFTVIF +A D KK    +G  PN+++ PQ+NQN  QN  
Sbjct: 5  KGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSDQN-- 64

Query: 66 HEAAKKNHEHKYPRKQKGWNC 85
                NH  + P+ +  W C
Sbjct: 65 -----NNHSSQNPKAKNKWFC 78

BLAST of ClCG05G026180 vs. TAIR10
Match: AT3G48450.1 (AT3G48450.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-12
Identity = 35/87 (40.23%), Postives = 44/87 (50.57%), Query Frame = 1

Query: 1  MTTAQRGPFLPKFGEWDEKNPAAAEGFTVIFDRARDNKKN-GGGTGTPNNVI--PQQNQN 60
          M T  R   LPKFGEWD  NP +AEGFTVIF++ARD+KK        P +++  P+  + 
Sbjct: 1  MATGNRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKTMKTAVAGPESIVSPPRNEEP 60

Query: 61 QYQNKKHEAAKKNHEHKYPRKQKGWNC 85
             N  H         + PR +K W C
Sbjct: 61 PKNNNNHHHNHHTRHSQTPRSKKKWLC 87

BLAST of ClCG05G026180 vs. TAIR10
Match: AT2G04410.1 (AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-11
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1

Query: 4  AQRGPFLPKFGEWDEKNPAAAEGFTVIFDRARDNKKNGGGTGTPNNVIPQQNQN 58
          A +G  LPKFGEWD  +P++AEGFTVIF++AR+ KK GG + +P    P  N+N
Sbjct: 2  ADKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGKDEPGYNKN 55

BLAST of ClCG05G026180 vs. TAIR10
Match: AT5G55850.2 (AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 63.9 bits (154), Expect = 5.5e-11
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 1

Query: 6  RGPFLPKFGEWDEKNPAAAEGFTVIFDRARDNKKNGGGTGTP 48
          +G  LPKFGEWD  +PA+AEGFTVIF++ARD KK GG  G+P
Sbjct: 20 KGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSP 61

BLAST of ClCG05G026180 vs. TAIR10
Match: AT5G40645.1 (AT5G40645.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 54.7 bits (130), Expect = 3.3e-08
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1

Query: 10 LPKFGEWDEKNPAAAEGFTVIFDRARDNKK-NGGGTGTPNNVIPQQNQNQYQNKK 64
          LPKFGEWD  +PA+AEGFTVIF +ARD+KK N  G          ++Q++   K+
Sbjct: 15 LPKFGEWDVNDPASAEGFTVIFAKARDDKKTNASGRAASQRRDNNKSQDEPTKKR 69

BLAST of ClCG05G026180 vs. NCBI nr
Match: gi|449435021|ref|XP_004135294.1| (PREDICTED: RPM1-interacting protein 4 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 8.2e-33
Identity = 67/87 (77.01%), Postives = 75/87 (86.21%), Query Frame = 1

Query: 1  MTTAQRGPFLPKFGEWDEKNPAAAEGFTVIFDRARDNKKNGGGTGTPNNVIPQQNQNQYQ 60
          M +AQ+GPFLPKFG+WDE+NPAAAEGFTVIF+RARDNKKNGG  GTPNNVIP QNQ+Q  
Sbjct: 1  MASAQKGPFLPKFGDWDEQNPAAAEGFTVIFNRARDNKKNGGAAGTPNNVIPPQNQSQ-- 60

Query: 61 NKKHEAAKKNHEHKYPRKQKGWNCCFW 88
            K+E AKKN +HKYPRKQKGW  CFW
Sbjct: 61 --KYEPAKKNQKHKYPRKQKGWCGCFW 83

BLAST of ClCG05G026180 vs. NCBI nr
Match: gi|659090596|ref|XP_008446098.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 1.0e-30
Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 1

Query: 1  MTTAQRGPFLPKFGEWDEKNPAAAEGFTVIFDRARDNKKNGGGTGTPNNVIPQQNQNQYQ 60
          MT+AQ+GPFLPKFG+WDEKNPAAAEGFTVIF+RARDNKKNGGG GTPNNVIP QN+ Q Q
Sbjct: 1  MTSAQKGPFLPKFGDWDEKNPAAAEGFTVIFNRARDNKKNGGGAGTPNNVIPPQNRTQKQ 60

Query: 61 NKKHEAAKKNHEHKYPRKQKGWNCCFW 88
              E  +K    KYPRKQKGW  CFW
Sbjct: 61 EPAKEIKQK---QKYPRKQKGWCSCFW 84

BLAST of ClCG05G026180 vs. NCBI nr
Match: gi|731333125|ref|XP_010677565.1| (PREDICTED: RPM1-interacting protein 4-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-13
Identity = 47/95 (49.47%), Postives = 56/95 (58.95%), Query Frame = 1

Query: 3  TAQRGPFLPKFGEWDEKNPAAAEGFTVIFDRARDNKK-NG---GGTGTPNNVIPQQNQNQ 62
          T  RG  LPKFGEWD  NPA+AEGFTVIF++ARD KK NG   GG G P      QN N 
Sbjct: 5  TNARGRPLPKFGEWDVNNPASAEGFTVIFNKARDQKKTNGTAVGGIGGPQKF--NQNINN 64

Query: 63 YQNKKHEAAKKNHEHKY------PRKQKGWNCCFW 88
            N+  +   ++H+HKY       R  K W CCF+
Sbjct: 65 VNNQHKQDYDQDHKHKYKQVDHQQRGSKKWLCCFY 97

BLAST of ClCG05G026180 vs. NCBI nr
Match: gi|567188976|ref|XP_006404257.1| (hypothetical protein EUTSA_v10011071mg [Eutrema salsugineum])

HSP 1 Score: 82.0 bits (201), Expect = 5.5e-13
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 1

Query: 1  MTTAQRGPFLPKFGEWDEKNPAAAEGFTVIFDRARDNK--KNGGGTGTPNNVIPQQNQNQ 60
          M T  +G  LPKFGEWD  NPA+AEGFTVIF++ARD+K  K     G  + V PQ N   
Sbjct: 1  MATGNKGRQLPKFGEWDASNPASAEGFTVIFNKARDDKKTKKTAVAGPESLVSPQINDES 60

Query: 61 YQNKKHEAAKKNHEHKYPRKQKGWNC 85
          +QN KH     N + + PR++K W C
Sbjct: 61 HQNNKHH---NNRKSQTPREKKKWLC 83

BLAST of ClCG05G026180 vs. NCBI nr
Match: gi|743803601|ref|XP_010926961.1| (PREDICTED: RPM1-interacting protein 4-like isoform X2 [Elaeis guineensis])

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 1

Query: 3  TAQRGPFLPKFGEWDEKNPAAAEGFTVIFDRARDNKKNGGGTGTPNNVIPQQNQNQYQNK 62
          T+++G  LPKFG+WD  NPA+AEGFTVIF++ARD KK  G  G  N+  P++N       
Sbjct: 2  TSEKGRPLPKFGDWDVNNPASAEGFTVIFNKARDEKKTSGNPGVANS--PRRN------- 61

Query: 63 KHEAAKKNHEHKYPRKQKGWNCC 86
               K +  ++YPRK K W CC
Sbjct: 62 NMGGLKPDETYQYPRKSKKWFCC 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KTF9_CUCSA5.7e-3377.01Uncharacterized protein OS=Cucumis sativus GN=Csa_5G591770 PE=4 SV=1[more]
A0A0J8CCN4_BETVU2.3e-1349.47Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g108820 PE=4 S... [more]
V4L5T8_EUTSA3.9e-1348.84Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011071mg PE=4 SV=1[more]
A0A087GDU0_ARAAL2.5e-1247.67Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G464100 PE=4 SV=1[more]
A0A087GDU1_ARAAL4.3e-1250.00Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G464100 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G63270.12.4e-1448.15 RPM1-interacting protein 4 (RIN4) family protein[more]
AT3G48450.11.7e-1240.23 RPM1-interacting protein 4 (RIN4) family protein[more]
AT2G04410.13.2e-1153.70 RPM1-interacting protein 4 (RIN4) family protein[more]
AT5G55850.25.5e-1166.67 RPM1-interacting protein 4 (RIN4) family protein[more]
AT5G40645.13.3e-0849.09 RPM1-interacting protein 4 (RIN4) family protein[more]
Match NameE-valueIdentityDescription
gi|449435021|ref|XP_004135294.1|8.2e-3377.01PREDICTED: RPM1-interacting protein 4 [Cucumis sativus][more]
gi|659090596|ref|XP_008446098.1|1.0e-3074.71PREDICTED: RPM1-interacting protein 4-like [Cucumis melo][more]
gi|731333125|ref|XP_010677565.1|3.2e-1349.47PREDICTED: RPM1-interacting protein 4-like [Beta vulgaris subsp. vulgaris][more]
gi|567188976|ref|XP_006404257.1|5.5e-1348.84hypothetical protein EUTSA_v10011071mg [Eutrema salsugineum][more]
gi|743803601|ref|XP_010926961.1|1.6e-1246.99PREDICTED: RPM1-interacting protein 4-like isoform X2 [Elaeis guineensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008700TypeIII_avirulence_cleave
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G026180.1ClCG05G026180.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008700RIN4, pathogenic type III effector avirulence factor Avr cleavage sitePFAMPF05627AvrRpt-cleavagecoord: 5..39
score: 1.3
NoneNo IPR availablePANTHERPTHR33159FAMILY NOT NAMEDcoord: 1..85
score: 2.3
NoneNo IPR availablePANTHERPTHR33159:SF4RPM1-INTERACTING PROTEIN 4 FAMILY PROTEINcoord: 1..85
score: 2.3

The following gene(s) are paralogous to this gene:

None