ClCG05G009350 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G009350
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Anaphase promoting complex subunit 6/cell division cycle protein (IC)
Location	CG_Chr05 : 10198894 .. 10199718 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCAGAACCGCGAATGCGGCTGATTCCGTCGGCGACGAACCTCTTCCTCCTTTCCAGCGTTCTCCGGCGATAGCCGGGAGAATCTCAGGCTACGTCAGGCCACTACAATGCTGCCGCTCCTCAACGTTCGCCAAGTGCCTTTTTCCCCCTCCTTCTTTCTTTCCTGTTAATACCCGAGGATGTTTTCTCTCTTCCCGATGGAATAACTCATTCTTTCCTCAATCTATGAGTTCAAATGTATCTTTTGCAACAAGTTTTATTTGGTCGGGCATTTCTGAGTCAACTCATATCTCTTGTGTTATCTAATAAACCTTATTAGTAACAAGGAATTTGATATTTCCAATATGAAAAACCTTTTCTGATATCTATTATGATATTCTACAGCAAAGTTACAACTCTGGATGGAACATTTACACCTGCTTTGATAGGTTATGGTAATGCTTGTGGAGCTCAAGAAGAGGGTGTTCAAGCCATGTCTGCCTATCGGACTGGTGCTCAATTGTTTCTAGGGTAATTAATTTTGCTATTCTCTAGTTATTTTATGTTTTTTTAAAGAAAAATTGGGAGCGTCTGGTTTGAAATTATTTATGTTATTAAGCAATACCTTTATCATCTGTTTAAAATTTTAAACGATGAATGATAGAAAATTTGATTATTATCATTTTGTAAAAGTTGTAGGAAGTTGTTCATTGGCTAGTTCTCTTATTTCATGAAATTCCCTTCTACAGGTTGAATCTTGATATTCTCTTAATTGCTCAATGCTTCAACTGGAGAAAGATGGAATTTAGTTTGGATGGTAAATATTTAACAGAACATGGAGTGTGA

mRNA sequence

ACCAGAACCGCGAATGCGGCTGATTCCGTCGGCGACGAACCTCTTCCTCCTTTCCAGCGTTCTCCGGCGATAGCCGGGAGAATCTCAGGCTACGTCAGGCCACTACAATGCTGCCGCTCCTCAACGTTCGCCAAGTGCCTTTTTCCCCCTCCTTCTTTCTTTCCTGTTAATACCCGAGGATGTTTTCTCTCTTCCCGATGGAATAACTCATTCTTTCCTCAATCTATGAGTTCAAATGTATCTTTTGCAACAAGTTTTATTTGGTCGGGCATTTCTGAGTCAACTCATATCTCTTGTGTTATCTAATAAACCTTATTAGTAACAAGGAATTTGATATTTCCAATATGAAAAACCTTTTCTGATATCTATTATGATATTCTACAGCAAAGTTACAACTCTGGATGGAACATTTACACCTGCTTTGATAGGTTATGGTAATGCTTGTGGAGCTCAAGAAGAGGGTGTTCAAGCCATGTCTGCCTATCGGACTGGTGCTCAATTGTTTCTAGGGTTGAATCTTGATATTCTCTTAATTGCTCAATGCTTCAACTGGAGAAAGATGGAATTTAGTTTGGATGGTAAATATTTAACAGAACATGGAGTGTGA

Coding sequence (CDS)

ATGATATTCTACAGCAAAGTTACAACTCTGGATGGAACATTTACACCTGCTTTGATAGGTTATGGTAATGCTTGTGGAGCTCAAGAAGAGGGTGTTCAAGCCATGTCTGCCTATCGGACTGGTGCTCAATTGTTTCTAGGGTTGAATCTTGATATTCTCTTAATTGCTCAATGCTTCAACTGGAGAAAGATGGAATTTAGTTTGGATGGTAAATATTTAACAGAACATGGAGTGTGA

Protein sequence

MIFYSKVTTLDGTFTPALIGYGNACGAQEEGVQAMSAYRTGAQLFLGLNLDILLIAQCFNWRKMEFSLDGKYLTEHGV

Homology

[Close]

BLAST of ClCG05G009350 vs. Swiss-Prot
Match: CDC16_ARATH (Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana GN=APC6 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.6e-11
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 3   FYSKVTTLDGTFTPALIGYGNACGAQEEGVQAMSAYRTGAQLFLGLNLDILLI 56
           ++SK T +DG+F+PA IGYGN+  AQEEG QAMSAYRT A+LF G +L  L I
Sbjct: 331 YFSKATGIDGSFSPARIGYGNSFAAQEEGDQAMSAYRTAARLFPGCHLPTLYI 383

[Close]

BLAST of ClCG05G009350 vs. TrEMBL
Match: A0A061F9F4_THECC (Anaphase promoting complex 6 isoform 2 OS=Theobroma cacao GN=TCM_031876 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-11
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1


Query: 3   FYSKVTTLDGTFTPALIGYGNACGAQEEGVQAMSAYRTGAQLFLGLNLDILL 55
           ++SK T+LDGTF PA IG+GNA   +EEG QAMSAYRT A+LF GLNLDILL
Sbjct: 333 YFSKATSLDGTFPPAWIGFGNAYAVREEGDQAMSAYRTAARLFPGLNLDILL 384

[Close]

BLAST of ClCG05G009350 vs. TrEMBL
Match: A0A0A0L2G5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G506830 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-11
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 3   FYSKVTTLDGTFTPALIGYGNACGAQEEGVQAMSAYRTGAQLFLGLNLDILLI 56
           ++SK TTLDGTF PA IGYGNA  AQEEG QAMSAYRTGA+LF G +L  L I
Sbjct: 335 YFSKATTLDGTFAPAWIGYGNAYAAQEEGDQAMSAYRTGARLFPGCHLPTLYI 387

[Close]

BLAST of ClCG05G009350 vs. TrEMBL
Match: A0A067K367_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16222 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-10
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 3   FYSKVTTLDGTFTPALIGYGNACGAQEEGVQAMSAYRTGAQLFLGLNLDILLI 56
           ++SK T+LDGTF PA IGYGNA  +QEEG QAMSAYRTGA+LF G +L  L I
Sbjct: 333 YFSKATSLDGTFAPAWIGYGNAYASQEEGDQAMSAYRTGARLFPGCHLPTLYI 385

[Close]

BLAST of ClCG05G009350 vs. TrEMBL
Match: I1LT60_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G156300 PE=4 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 2.7e-10
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 1


Query: 3   FYSKVTTLDGTFTPALIGYGNACGAQEEGVQAMSAYRTGAQLFLGLNLDILLIA-QCFNW 62
           ++SK T+LDGTF PA IGYGNA  AQEEG QAMSAYRT A+LF G +L  L I  +C   
Sbjct: 333 YFSKATSLDGTFLPAWIGYGNAYAAQEEGDQAMSAYRTAARLFPGCHLATLYIGMECM-- 392

Query: 63  RKMEFSLDGKYLTE 76
           R   + L  ++ T+
Sbjct: 393 RTHSYKLAEQFFTQ 404

[Close]

BLAST of ClCG05G009350 vs. TrEMBL
Match: A0A0R0HIJ5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G156300 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.7e-10
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 1


Query: 3   FYSKVTTLDGTFTPALIGYGNACGAQEEGVQAMSAYRTGAQLFLGLNLDILLIA-QCFNW 62
           ++SK T+LDGTF PA IGYGNA  AQEEG QAMSAYRT A+LF G +L  L I  +C   
Sbjct: 329 YFSKATSLDGTFLPAWIGYGNAYAAQEEGDQAMSAYRTAARLFPGCHLATLYIGMECM-- 388

Query: 63  RKMEFSLDGKYLTE 76
           R   + L  ++ T+
Sbjct: 389 RTHSYKLAEQFFTQ 400

[Close]

BLAST of ClCG05G009350 vs. TAIR10
Match: AT1G78770.1 (AT1G78770.1 anaphase promoting complex 6)

HSP 1 Score: 68.2 bits (165), Expect = 2.6e-12
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 3   FYSKVTTLDGTFTPALIGYGNACGAQEEGVQAMSAYRTGAQLFLGLNLDILLI 56
           ++SK T +DG+F+PA IGYGN+  AQEEG QAMSAYRT A+LF G +L  L I
Sbjct: 331 YFSKATGIDGSFSPARIGYGNSFAAQEEGDQAMSAYRTAARLFPGCHLPTLYI 383

[Close]

BLAST of ClCG05G009350 vs. NCBI nr
Match: gi|449457307|ref|XP_004146390.1| (PREDICTED: anaphase-promoting complex subunit 6 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 3   FYSKVTTLDGTFTPALIGYGNACGAQEEGVQAMSAYRTGAQLFLGLNLDILLI 56
           ++SK TTLDGTF PA IGYGNA  AQEEG QAMSAYRTGA+LF G +L  L I
Sbjct: 335 YFSKATTLDGTFAPAWIGYGNAYAAQEEGDQAMSAYRTGARLFPGCHLPTLYI 387

[Close]

BLAST of ClCG05G009350 vs. NCBI nr
Match: gi|700199644|gb|KGN54802.1| (hypothetical protein Csa_4G506830 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 3   FYSKVTTLDGTFTPALIGYGNACGAQEEGVQAMSAYRTGAQLFLGLNLDILLI 56
           ++SK TTLDGTF PA IGYGNA  AQEEG QAMSAYRTGA+LF G +L  L I
Sbjct: 335 YFSKATTLDGTFAPAWIGYGNAYAAQEEGDQAMSAYRTGARLFPGCHLPTLYI 387

[Close]

BLAST of ClCG05G009350 vs. NCBI nr
Match: gi|590610413|ref|XP_007021807.1| (Anaphase promoting complex 6 isoform 2 [Theobroma cacao])

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1


Query: 3   FYSKVTTLDGTFTPALIGYGNACGAQEEGVQAMSAYRTGAQLFLGLNLDILL 55
           ++SK T+LDGTF PA IG+GNA   +EEG QAMSAYRT A+LF GLNLDILL
Sbjct: 333 YFSKATSLDGTFPPAWIGFGNAYAVREEGDQAMSAYRTAARLFPGLNLDILL 384

[Close]

BLAST of ClCG05G009350 vs. NCBI nr
Match: gi|659082954|ref|XP_008442113.1| (PREDICTED: anaphase-promoting complex subunit 6 isoform X1 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 3   FYSKVTTLDGTFTPALIGYGNACGAQEEGVQAMSAYRTGAQLFLGLNLDILLI 56
           ++SK TTLDGTF PA IGYGNA  AQEEG QAMSAYRTGA+LF G +L  L I
Sbjct: 335 YFSKATTLDGTFAPAWIGYGNAYAAQEEGDQAMSAYRTGARLFPGCHLPTLYI 387

[Close]

BLAST of ClCG05G009350 vs. NCBI nr
Match: gi|802659155|ref|XP_012080802.1| (PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas])

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-10
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 3   FYSKVTTLDGTFTPALIGYGNACGAQEEGVQAMSAYRTGAQLFLGLNLDILLI 56
           ++SK T+LDGTF PA IGYGNA  +QEEG QAMSAYRTGA+LF G +L  L I
Sbjct: 333 YFSKATSLDGTFAPAWIGYGNAYASQEEGDQAMSAYRTGARLFPGCHLPTLYI 385

The following BLAST results are available for this feature:

BLAST of ClCG05G009350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CDC16_ARATH	4.6e-11	62.26	Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana GN=APC6 PE=2 SV=1	[more]

BLAST of ClCG05G009350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061F9F4_THECC	1.9e-11	71.15	Anaphase promoting complex 6 isoform 2 OS=Theobroma cacao GN=TCM_031876 PE=4 SV=...	[more]
A0A0A0L2G5_CUCSA	1.9e-11	71.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G506830 PE=4 SV=1	[more]
A0A067K367_JATCU	1.2e-10	67.92	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16222 PE=4 SV=1	[more]
I1LT60_SOYBN	2.7e-10	54.05	Uncharacterized protein OS=Glycine max GN=GLYMA_12G156300 PE=4 SV=2	[more]
A0A0R0HIJ5_SOYBN	2.7e-10	54.05	Uncharacterized protein OS=Glycine max GN=GLYMA_12G156300 PE=4 SV=1	[more]

BLAST of ClCG05G009350 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78770.1	2.6e-12	62.26	anaphase promoting complex 6	[more]

BLAST of ClCG05G009350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457307\|ref\|XP_004146390.1\|	2.7e-11	71.70	PREDICTED: anaphase-promoting complex subunit 6 [Cucumis sativus]	[more]
gi\|700199644\|gb\|KGN54802.1\|	2.7e-11	71.70	hypothetical protein Csa_4G506830 [Cucumis sativus]	[more]
gi\|590610413\|ref\|XP_007021807.1\|	2.7e-11	71.15	Anaphase promoting complex 6 isoform 2 [Theobroma cacao]	[more]
gi\|659082954\|ref\|XP_008442113.1\|	2.7e-11	71.70	PREDICTED: anaphase-promoting complex subunit 6 isoform X1 [Cucumis melo]	[more]
gi\|802659155\|ref\|XP_012080802.1\|	1.8e-10	67.92	PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G009350.1	ClCG05G009350.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G009350	Cla97C05G091700	Watermelon (97103) v2	wcgwmbB229

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G009350	Wax gourd	wcgwgoB427
ClCG05G009350	Cucumber (Gy14) v1	cgywcgB003
ClCG05G009350	Cucurbita maxima (Rimu)	cmawcgB297
ClCG05G009350	Cucurbita maxima (Rimu)	cmawcgB659
ClCG05G009350	Cucurbita moschata (Rifu)	cmowcgB291
ClCG05G009350	Cucurbita moschata (Rifu)	cmowcgB660
ClCG05G009350	Wild cucumber (PI 183967)	cpiwcgB237
ClCG05G009350	Cucumber (Chinese Long) v2	cuwcgB230
ClCG05G009350	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G009350	Watermelon (97103) v1	wcgwmB286
ClCG05G009350	Cucurbita pepo (Zucchini)	cpewcgB208
ClCG05G009350	Cucurbita pepo (Zucchini)	cpewcgB394
ClCG05G009350	Bottle gourd (USVL1VR-Ls)	lsiwcgB332
ClCG05G009350	Cucumber (Gy14) v2	cgybwcgB214
ClCG05G009350	Melon (DHL92) v3.6.1	medwcgB417
ClCG05G009350	Silver-seed gourd	carwcgB0045
ClCG05G009350	Silver-seed gourd	carwcgB0636
ClCG05G009350	Cucumber (Chinese Long) v3	cucwcgB238