ClCG05G000460 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G000460
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCG_Chr05 : 589445 .. 594125 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTGCAAGACTCTCACTGTGATTTTTTCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATTTGAATATCTGGGGTCTCCACTTTTCAGTCCTATAAGGTGTCCAGATGTGTTCTTGGTTCATTTGATTTCTTTTTCCTTTTGAGCTCGAATTGCTGATAGTGATGTGTTCTTTTCTTTTTCTTTTCCGGGTTTTGGTTTCTTTAGCTGCCTCGGAATGTGCATGTTGGCGAATTTATTCTGCTTATTTGTGTTTCTGTCTGATATTACTCCCATTTAGGTGTGTGTTTTTCAATAGGCTATTTGATTCTGATCATTATTTGTGTTTCTGTTTGATATTACTCCCATTTAGGCGTGTGCTTTTCATTCTGATCGTGTTAATCTTCCGGCTGTGATTGTCAGCCCGTACAACTCGAACTCTCTCATCTCTGCTCTGGTTTCCTCTCAGGACTTTCCACAAACACTTGGAGCTAATAACTTTTTCCACAAGATGTGGAAAGTATGACGTGATTTTTGCAGATTGTTTCTACTTAGCCATGTGGGATGGAAGAATGAGATCAAAGCTTTGTGCATTCTCGCTTCTGGGTCGTACGTGTTTCAGTTGGTCTTCTATTAAATCCACCCAACATGTCGAACTCGGAGCTCTTACCAATGCTACCATGGCCTCTGGTTTTAGTTTGTGGCCTACACGCATTCATACTGCCGACACTGCTACTGCATTGAACTCCAATGTTGGGGATCTCTTCTCGTTTGGCTTTTGTTCTCGTTCTTATATCTCTCCGACCTCAAACCACGATATTTTGAATGCAACTTCCAAAGAATCTTGTCACTATGCAGCCAGTGATGATCATGTTAGTGGTGATGATGACGATGATCGTGAAGAACATGAAGAAGAGGACATGAACATCAATGACGAGGGTGTGATACAAGATGTAGATGCCATTATGGATATATTTCGTGGGTTCAGGAATGTAAATCGAACTCAAGTGAAAAATAAGCTTGAGCATTGCTGTATTAAGGTATCAGGAGAGTTGGTAGTAGCAGTACTTTCTCGGATCCGTAATGATTGGGAAGCAGCATTCACTTTTTTTGTTTGGGCTGGTAAGCAGCCTGGTTATGCCCACTCTGTGCGTGAATATCATTCAATGATTTCAATTCTTGGCAAAATGAGAAAGTTCGACACGGCATGGGCCTTGATCGATGAGATGAGAGGAGGGACAACGGGCTCTTCTCTAGTGAGCCCTCAAACCCTTCTAATCATGATTAGGAAATACTGTGCTGTTCATGATGTTGGTAAAGCTATAAATACCTTCCATGCTCATAAAAGATTTGGATTTAACATTGGACTAGAGGAATTTCAGAACCTTCTCTCCGCCCTCTGCCGTTACAAAAATGTGAAAGATGCTGAATATTTGCTGTTTTGCAACAAAGATGTGTTCCCATTTAACACAAAGAGTTTCAATATTATCCTCAATGGGTGGTGTAATATAATTGGCAGTCTTCGGGATGCCGAGAGAGTTTGGAAGGAGATGATGCAGAGAGGTATCAGTCATGATGCTGTCTCATATGCAAGTTTCATTTCTTGTTACTCAAAAACTCGCAACCTTTATAAGGTGCTCAGGCTTTTTGACGATATGAAGCAAATGAAAGTTGAACCTGATAGGAAAGTCTACAATGCAGTCATTCACGCTCTTGCCAAAGGTAGGCTTCTGAAAGAAGCTATCAATCTCATAAAAACAATGGAAGATAAGGGTATTATTGCAAATGTTGTTACTTATAACTCAGTAATCAAACCTCTATGCAAGGCCTGGAAATTTGATGAAGCTAGAGCGGTTTTTGATGAGCTGTTGCAGCGGGGCCTCTGCCCAACAATTCAGACTTATCATGCCTTCTTGAGATTCCTGAGAACGGAGGAAGAAATATTTGAGCTCTTGGAGAAGATGAGAAAAATGGGGTGCGATCCAACCGCTGAAACCTACATAATGTTGATCAGAAAGTTTTGCCGATGGCGCCAGCTTGATAATGTTTCCAGAATATGGCATGAAATGAGTGAAAATGGAATTAGTCCTGATCGCAGCTCTTATATGGTCTTAATACATGGTCTCTTCTTGAATGGAAAATTAGAAGATGCATATAAATACTATTTGGAAATGAAGGAAAAAGAGTTGCTTCCTGAACCAAAGATAGATGAGATACTACAAGCTTGGCTTGCTGGTAAGCCAATGTTTCAAGAGAAGCCATCAGATTGTTCTGGGGAAGGCAAGAACTCCAGATTGTTCCCCAAAAGGATTGATTTTCACCGACAACCTGAGATTAGAAAGGTTTCAAGAGATTGTGGTTTTTCATTTTGGAAGCAGTAGGATTTTGTAGATATCTTATCCCATCAACCTTGAGGTTCAAGTGGCTTGTTGGGCCGTTCGAGTGCACGACTTCAACCGTTCATCTGAGGTTCAGTTCAGGTGCCTTCGACCTCTCTCCATCTCACAGTGATCCTCTTTCCTTCCACTGCGCCATCAATACTTTTACGCGGTTCAAGTGCGGAGGACCATTGCCAACCTAAGTTACACTTGTACCCTCTCCATAGAGATTCTAATCTCTGATCTGACATGTTATTGAACTCATAAAAGAAAAGTGTCGAGGACCATTGATGGTAAAAGTCAAAGATGCAACCTTTAATTACTTCTCATCTTATTTGGTCTCAACTTTGTCATTAAGAAGTCATTCCAAATAGGCTCGAAACGAGTCATTGGCTGCATACACTGGTCCTATGGAACAACAAATTAATTTGATTTTTTTTTTTCTGGGTATATTGTTCTTTTGAACATAAATATCCTACTAGGATTATCATACAAGGGGAAGTAGCAGAGTATCTACTTTTTAAGATTGAAGTGATATATGTTCAATTCTTTTGGATAAACCTTTTAGTTTGTTTGATTGCACTTCTTTTTTCCTTTTTTTTTTATAAGATTGTTGTGCCACTAAGCACGAGATCTGA

mRNA sequence

ATGTCTTGCAAGACTCTCACTGCGTGTGCTTTTCATTCTGATCGTGTTAATCTTCCGGCTGTGATTGTCAGCCCGTACAACTCGAACTCTCTCATCTCTGCTCTGCGGGGCCTCTGCCCAACAATTCAGACTTATCATGCCTTCTTGAGATTCCTGAGAACGGAGGAAGAAATATTTGAGCTCTTGGAGAAGATGAGAAAAATGGGGTGCGATCCAACCGCTGAAACCTACATAATGTTGATCAGAAAGTTTTGCCGATGGCGCCAGCTTGATAATGTTTCCAGAATATGGCATGAAATGAGTGAAAATGGAATTAGTCCTGATCGCAGCTCTTATATGGTCTTAATACATGGTCTCTTCTTGAATGGAAAATTAGAAGATGCATATAAATACTATTTGGAAATGAAGGAAAAAGAGTTGCTTCCTGAACCAAAGATAGATGAGATACTACAAGCTTGGCTTGCTGGTAAGCCAATGTTTCAAGAGAAGCCATCAGATTGTTCTGGGGAAGGCAAGAACTCCAGATTGTTCCCCAAAAGGATTGATTTTCACCGACAACCTGAGATTAGAAAGGTTTCAAGAGATTGTGATTGTTGTGCCACTAAGCACGAGATCTGA

Coding sequence (CDS)

ATGTCTTGCAAGACTCTCACTGCGTGTGCTTTTCATTCTGATCGTGTTAATCTTCCGGCTGTGATTGTCAGCCCGTACAACTCGAACTCTCTCATCTCTGCTCTGCGGGGCCTCTGCCCAACAATTCAGACTTATCATGCCTTCTTGAGATTCCTGAGAACGGAGGAAGAAATATTTGAGCTCTTGGAGAAGATGAGAAAAATGGGGTGCGATCCAACCGCTGAAACCTACATAATGTTGATCAGAAAGTTTTGCCGATGGCGCCAGCTTGATAATGTTTCCAGAATATGGCATGAAATGAGTGAAAATGGAATTAGTCCTGATCGCAGCTCTTATATGGTCTTAATACATGGTCTCTTCTTGAATGGAAAATTAGAAGATGCATATAAATACTATTTGGAAATGAAGGAAAAAGAGTTGCTTCCTGAACCAAAGATAGATGAGATACTACAAGCTTGGCTTGCTGGTAAGCCAATGTTTCAAGAGAAGCCATCAGATTGTTCTGGGGAAGGCAAGAACTCCAGATTGTTCCCCAAAAGGATTGATTTTCACCGACAACCTGAGATTAGAAAGGTTTCAAGAGATTGTGATTGTTGTGCCACTAAGCACGAGATCTGA

Protein sequence

MSCKTLTACAFHSDRVNLPAVIVSPYNSNSLISALRGLCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSRIWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEILQAWLAGKPMFQEKPSDCSGEGKNSRLFPKRIDFHRQPEIRKVSRDCDCCATKHEI
Homology
[Close]
BLAST of ClCG05G000460 vs. Swiss-Prot
Match: PP383_ARATH (Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2)

HSP 1 Score: 195.7 bits (496), Expect = 5.1e-49
Identity = 90/163 (55.21%), Postives = 117/163 (71.78%), Query Frame = 1 

Query: 36  RGLCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSR 95
           +GL PTI+TYHAF+R LRT EE+FELL KMRKMGC+PT ETYIMLIRK CRWR  DNV  
Sbjct: 402 KGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLL 461

Query: 96  IWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEILQAWLA 155
           +W EM E  + PD SSY+V+IHGLFLNGK+E+AY YY EMK+K + P   +++++Q+W +
Sbjct: 462 LWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQSWFS 521

Query: 156 GKPMFQEKPSDCSGEGKNSRLFPK---RIDFHRQPEIRKVSRD 196
           GK   +++ +D  GE     +  K     +F +QPE+RKV R+
Sbjct: 522 GKQYAEQRITDSKGEVNKGAIVKKSEREKNFLQQPEVRKVVRE 564


HSP 2 Score: 33.9 bits (76), Expect = 2.6e+00
Identity = 26/122 (21.31%), Postives = 50/122 (40.98%), Query Frame = 1 

Query: 25  PYNSNSLISALRGLCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKF 84
           P+++ S    L G C  I +            E   +  +M  +G      +Y  +I  +
Sbjct: 263 PFDAKSFNIVLNGWCNVIGS----------PREAERVWMEMGNVGVKHDVVSYSSMISCY 322

Query: 85  CRWRQLDNVSRIWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEP 144
            +   L+ V +++  M +  I PDR  Y  ++H L     + +A      M+E++ + EP
Sbjct: 323 SKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGI-EP 373

Query: 145 KI 147
            +
Sbjct: 383 NV 373

[Close]
BLAST of ClCG05G000460 vs. Swiss-Prot
Match: PP233_ARATH (Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-16
Identity = 38/115 (33.04%), Postives = 68/115 (59.13%), Query Frame = 1 

Query: 37  GLC-PTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSR 96
           G C P   T+   L++ +  +++  +LE+M K  C+ T++ Y ++ R + +W + + V  
Sbjct: 383 GSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNKCEMTSDLYNLMFRLYVQWDKEEKVRE 442

Query: 97  IWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEIL 151
           IW EM  +G+ PD+ +Y + IHGL   GK+ +A  Y+ EM  K ++PEP+ + +L
Sbjct: 443 IWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPRTEMLL 497


HSP 2 Score: 32.3 bits (72), Expect = 7.4e+00
Identity = 19/70 (27.14%), Postives = 32/70 (45.71%), Query Frame = 1 

Query: 49  LRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSRIWHEMSENG--IS 108
           L F +   E  E+  ++ + G DP   TY  L++  C+ R+ + V  +  EM   G   S
Sbjct: 327 LCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSCS 386

Query: 109 PDRSSYMVLI 117
           P+  ++  L+
Sbjct: 387 PNDVTFSYLL 396

[Close]
BLAST of ClCG05G000460 vs. Swiss-Prot
Match: PP137_ARATH (Pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Arabidopsis thaliana GN=At1g80880 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.2e-12
Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = 1 

Query: 38  LCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSRIW 97
           L PT+ T+HAFL  +  E+ + E+L +M+     PT ET+++++ K  + +Q +N  +IW
Sbjct: 395 LSPTVDTFHAFLEAVNFEKTL-EVLGQMKISDLGPTEETFLLILGKLFKGKQPENALKIW 454

Query: 98  HEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEILQ 152
            EM    I  + + Y+  I GL   G LE A + Y EMK K  +  P + ++L+
Sbjct: 455 AEMDRFEIVANPALYLATIQGLLSCGWLEKAREIYSEMKSKGFVGNPMLQKLLE 507


HSP 2 Score: 43.9 bits (102), Expect = 2.5e-03
Identity = 26/89 (29.21%), Postives = 41/89 (46.07%), Query Frame = 1 

Query: 75  ETYIMLIRKFCR-WRQLDNVSRIWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYL 134
           E + +++  +C  W  +    RIW EM    I+P++ SY  +I      G L D+ + Y 
Sbjct: 259 EGFNVILNGWCNIWTDVTEAKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFDSLRLYD 318

Query: 135 EMKEKELLPEPKIDEILQAWLAGKPMFQE 163
           EMK++ L P  ++   L   L  +  F E
Sbjct: 319 EMKKRGLAPGIEVYNSLVYVLTREDCFDE 347

[Close]
BLAST of ClCG05G000460 vs. Swiss-Prot
Match: PP112_ARATH (Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-11
Identity = 36/108 (33.33%), Postives = 53/108 (49.07%), Query Frame = 1 

Query: 35  LRGLCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVS 94
           L+G+ P  +TY   L  L   +   E  E  + M C+PT  TY +++R FC   +LD   
Sbjct: 365 LKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEPTVSTYEIMVRMFCNKERLDMAI 424

Query: 95  RIWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLP 143
           +IW EM   G+ P    +  LI  L    KL++A +Y+ EM +  + P
Sbjct: 425 KIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRP 472

[Close]
BLAST of ClCG05G000460 vs. Swiss-Prot
Match: PP447_ARATH (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-10
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1 

Query: 36  RGLCPTIQTY-HAFLRFLRTE--EEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDN 95
           +GL P+  TY H  +   + E  EE  EL+EKMR++   P    Y ++IR  C+  ++  
Sbjct: 386 KGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKE 445

Query: 96  VSRIWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKEL 141
             R+W+EM ENG+SP   +++++I+GL   G L +A  ++ EM  + L
Sbjct: 446 AVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGL 493


HSP 2 Score: 44.7 bits (104), Expect = 1.4e-03
Identity = 27/106 (25.47%), Postives = 49/106 (46.23%), Query Frame = 1 

Query: 36  RGLCPTIQTYHAFLRFL---RTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDN 95
           RG  P    Y   ++ L      EE  ++  +M +  C+    TY  L+  FC+W ++D 
Sbjct: 316 RGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDK 375

Query: 96  VSRIWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEK 139
              +  +M + G+ P   +YM   H +  + K +++++  LE+ EK
Sbjct: 376 CYIVLDDMIKKGLMPSELTYM---HIMVAHEK-KESFEECLELMEK 417

[Close]
BLAST of ClCG05G000460 vs. TrEMBL
Match: A0A0A0L308_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118150 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.9e-79
Identity = 142/159 (89.31%), Postives = 151/159 (94.97%), Query Frame = 1 

Query: 36  RGLCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSR 95
           RGLCPTIQTYHAFLRFLRTEEEIFELL+KMR MGC+PT +TYIMLIRKFCRWRQLDNVSR
Sbjct: 434 RGLCPTIQTYHAFLRFLRTEEEIFELLKKMRTMGCNPTTDTYIMLIRKFCRWRQLDNVSR 493

Query: 96  IWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEILQAWLA 155
           IWHEMSENGISPDRSSY+VLIHGLFLNGKLEDA+KYYLEMKEK+LLPEPKIDE+LQ WLA
Sbjct: 494 IWHEMSENGISPDRSSYIVLIHGLFLNGKLEDAHKYYLEMKEKDLLPEPKIDEVLQTWLA 553

Query: 156 GKPMFQEKPSDCSGEGKNSRLFPKRIDFHRQPEIRKVSR 195
           GK +FQE PSDCSGEGKNS LFP + DFHRQPEIRKVSR
Sbjct: 554 GKSVFQENPSDCSGEGKNSSLFPNKNDFHRQPEIRKVSR 592

[Close]
BLAST of ClCG05G000460 vs. TrEMBL
Match: A0A0A0L308_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118150 PE=4 SV=1)

HSP 1 Score: 35.0 bits (79), Expect = 1.3e+02
Identity = 18/72 (25.00%), Postives = 35/72 (48.61%), Query Frame = 1 

Query: 75  ETYIMLIRKFCRWRQLDNVSRIWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLE 134
           +++ +++  +C    L +  R+W EM+  GIS D  SY   I        L    + + +
Sbjct: 301 KSFNIILNGWCVIGSLRDTERVWKEMTRRGISHDAVSYASCISCYSKVRNLHKVLRLFED 360

Query: 135 MKEKELLPEPKI 147
           MK  ++ P+ K+
Sbjct: 361 MKRMKIDPDRKV 372


HSP 2 Score: 213.0 bits (541), Expect = 3.4e-52
Identity = 109/180 (60.56%), Postives = 131/180 (72.78%), Query Frame = 1 

Query: 36  RGLCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSR 95
           R + PTI+TYHAFLR LRT EE+F LLEKMRKMGC P  +TYIMLIRKFCRWRQL+NV +
Sbjct: 331 RCISPTIRTYHAFLRILRTGEEVFALLEKMRKMGCQPINDTYIMLIRKFCRWRQLENVFK 390

Query: 96  IWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEILQAWLA 155
           +W EMSENGISPDRSSY+VLIHGLFLNG+L+ A+KYY EMKEK+LLPEPKIDE+LQ WL+
Sbjct: 391 LWDEMSENGISPDRSSYIVLIHGLFLNGELDAAHKYYTEMKEKQLLPEPKIDEMLQTWLS 450

Query: 156 GKPMFQEKPS-----------------DCSGEGKNSRLFPKRI---DFHRQPEIRKVSRD 196
            K + + + +                 DCS   + +R  PKR    +F RQ E RKV R+
Sbjct: 451 NKQIAEGQTTESRSNQCQTTELRSNQLDCSQSREQTRDIPKRSHERNFIRQAETRKVVRE 510

[Close]
BLAST of ClCG05G000460 vs. TrEMBL
Match: B9I5U4_POPTR (Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0013s05050g PE=4 SV=2)

HSP 1 Score: 40.8 bits (94), Expect = 2.3e+00
Identity = 24/79 (30.38%), Postives = 39/79 (49.37%), Query Frame = 1 

Query: 37  GLCPTIQTYHAFLRFL---RTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNV 96
           G+ P  + Y+A +  L   R   E F L++ M + G  P   TY  LI+  CR R+++  
Sbjct: 262 GIEPDRKVYNAVIHALAKGRLVNEAFNLMKTMEEKGVAPNIVTYNSLIKPLCRARKVEEA 321

Query: 97  SRIWHEMSENGISPDRSSY 113
              + +M +  ISP   +Y
Sbjct: 322 KGAFDDMLKRCISPTIRTY 340


HSP 2 Score: 213.0 bits (541), Expect = 3.4e-52
Identity = 109/180 (60.56%), Postives = 131/180 (72.78%), Query Frame = 1 

Query: 36  RGLCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSR 95
           R + PTI+TYHAFLR LRT EE+F LLEKMRKMGC P  +TYIMLIRKFCRWRQL+NV +
Sbjct: 412 RCISPTIRTYHAFLRILRTGEEVFALLEKMRKMGCQPINDTYIMLIRKFCRWRQLENVFK 471

Query: 96  IWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEILQAWLA 155
           +W EMSENGISPDRSSY+VLIHGLFLNG+L+ A+KYY EMKEK+LLPEPKIDE+LQ WL+
Sbjct: 472 LWDEMSENGISPDRSSYIVLIHGLFLNGELDAAHKYYTEMKEKQLLPEPKIDEMLQTWLS 531

Query: 156 GKPMFQEKPS-----------------DCSGEGKNSRLFPKRI---DFHRQPEIRKVSRD 196
            K + + + +                 DCS   + +R  PKR    +F RQ E RKV R+
Sbjct: 532 NKQIAEGQTTESRSNQCQTTELRSNQLDCSQSREQTRGIPKRSHERNFIRQAETRKVVRE 591

[Close]
BLAST of ClCG05G000460 vs. TrEMBL
Match: U7DWX5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0671s00210g PE=4 SV=1)

HSP 1 Score: 40.4 bits (93), Expect = 3.0e+00
Identity = 24/79 (30.38%), Postives = 38/79 (48.10%), Query Frame = 1 

Query: 37  GLCPTIQTYHAFLRFL---RTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNV 96
           G+ P  + Y+A +  L   R   E F L+  M + G  P   TY  LI+  CR R+++  
Sbjct: 343 GIEPDRKVYNAVIHALAKGRLVNEAFNLMRTMEEKGVAPNIVTYNSLIKPLCRARKVEEA 402

Query: 97  SRIWHEMSENGISPDRSSY 113
              + +M +  ISP   +Y
Sbjct: 403 KGAFDDMLKRCISPTIRTY 421


HSP 2 Score: 213.0 bits (541), Expect = 3.4e-52
Identity = 101/171 (59.06%), Postives = 129/171 (75.44%), Query Frame = 1 

Query: 36  RGLCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSR 95
           RGL PTI+TYHAF R L++ EE+F LLEKM++ GC P  +TYIMLIR+FCRWRQLDNV +
Sbjct: 389 RGLSPTIRTYHAFFRILKSGEEVFMLLEKMKETGCHPDKDTYIMLIRRFCRWRQLDNVFK 448

Query: 96  IWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEILQAWLA 155
           +W EMSENG+ PDRSSY+VLIHGLFLNGKLE+AYKYY+EMKEK+ LPEPK +++LQAW++
Sbjct: 449 LWSEMSENGVGPDRSSYIVLIHGLFLNGKLEEAYKYYIEMKEKQFLPEPKTEDMLQAWIS 508

Query: 156 GKPM-------FQEKPSDCSGEGKNSRLFPKRI----DFHRQPEIRKVSRD 196
           GK          ++  SD     K + +  K +    DF +QPE RKV+R+
Sbjct: 509 GKETADVRMIDLKDNQSDHGQSSKKTLVTSKNVDLGRDFRQQPETRKVTRE 559

[Close]
BLAST of ClCG05G000460 vs. TrEMBL
Match: F6I5J0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00030 PE=4 SV=1)

HSP 1 Score: 39.3 bits (90), Expect = 6.8e+00
Identity = 30/110 (27.27%), Postives = 50/110 (45.45%), Query Frame = 1 

Query: 38  LCPTIQTYHAFLRFLRTEEEIFELLEKMRKM---GCDPTAETYIMLIRKFCRWRQLDNVS 97
           + P  + Y+A +  L     + E L  M+ M   G  P + TY  LI+   R R+++   
Sbjct: 321 IAPDRKVYNAVVHALAKASFVKEALNLMKAMEGKGIAPDSVTYNSLIKPLSRARKINEAK 380

Query: 98  RIWHEMSENGISPDRSSYMVLIHGLFLNGKL-EDAYKYYLEMKEKELLPE 144
            ++ EM + G+SP   +Y    H  F   K  E+ +    +MKE    P+
Sbjct: 381 EVFDEMLQRGLSPTIRTY----HAFFRILKSGEEVFMLLEKMKETGCHPD 426


HSP 2 Score: 211.1 bits (536), Expect = 1.3e-51
Identity = 105/170 (61.76%), Postives = 127/170 (74.71%), Query Frame = 1 

Query: 37  GLCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSRI 96
           G  PT+QTYHAFLR LRT EE+F LLE M+KMGC P  +TYIMLIRKFCRW Q DNV ++
Sbjct: 171 GHSPTVQTYHAFLRTLRTAEEVFALLENMKKMGCQPINDTYIMLIRKFCRWCQFDNVFKL 230

Query: 97  WHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEILQAWLAG 156
           W+EM+ENGISPDRSSY+VLIHGLFLNGKLE+A+KYY +MK K+LLPEPKIDE+LQ WL+ 
Sbjct: 231 WNEMNENGISPDRSSYIVLIHGLFLNGKLEEAHKYYTDMKNKQLLPEPKIDEMLQTWLSN 290

Query: 157 KPMFQEKPS-------DCSGEGKNSRLFPKRID----FHRQPEIRKVSRD 196
           K + + + +       DCS  GK SR  P + +    F RQ E R V R+
Sbjct: 291 KQIAECQVTESKGTRLDCSQLGKQSRAIPNKTNHNNKFLRQAETRTVVRE 340

[Close]
BLAST of ClCG05G000460 vs. TAIR10
Match: AT5G15010.1 (AT5G15010.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 195.7 bits (496), Expect = 2.9e-50
Identity = 90/163 (55.21%), Postives = 117/163 (71.78%), Query Frame = 1 

Query: 36  RGLCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSR 95
           +GL PTI+TYHAF+R LRT EE+FELL KMRKMGC+PT ETYIMLIRK CRWR  DNV  
Sbjct: 402 KGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLL 461

Query: 96  IWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEILQAWLA 155
           +W EM E  + PD SSY+V+IHGLFLNGK+E+AY YY EMK+K + P   +++++Q+W +
Sbjct: 462 LWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQSWFS 521

Query: 156 GKPMFQEKPSDCSGEGKNSRLFPK---RIDFHRQPEIRKVSRD 196
           GK   +++ +D  GE     +  K     +F +QPE+RKV R+
Sbjct: 522 GKQYAEQRITDSKGEVNKGAIVKKSEREKNFLQQPEVRKVVRE 564


HSP 2 Score: 33.9 bits (76), Expect = 1.4e-01
Identity = 26/122 (21.31%), Postives = 50/122 (40.98%), Query Frame = 1 

Query: 25  PYNSNSLISALRGLCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKF 84
           P+++ S    L G C  I +            E   +  +M  +G      +Y  +I  +
Sbjct: 263 PFDAKSFNIVLNGWCNVIGS----------PREAERVWMEMGNVGVKHDVVSYSSMISCY 322

Query: 85  CRWRQLDNVSRIWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEP 144
            +   L+ V +++  M +  I PDR  Y  ++H L     + +A      M+E++ + EP
Sbjct: 323 SKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGI-EP 373

Query: 145 KI 147
            +
Sbjct: 383 NV 373

[Close]
BLAST of ClCG05G000460 vs. TAIR10
Match: AT3G15200.1 (AT3G15200.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-17
Identity = 38/115 (33.04%), Postives = 68/115 (59.13%), Query Frame = 1 

Query: 37  GLC-PTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSR 96
           G C P   T+   L++ +  +++  +LE+M K  C+ T++ Y ++ R + +W + + V  
Sbjct: 383 GSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNKCEMTSDLYNLMFRLYVQWDKEEKVRE 442

Query: 97  IWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEIL 151
           IW EM  +G+ PD+ +Y + IHGL   GK+ +A  Y+ EM  K ++PEP+ + +L
Sbjct: 443 IWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPRTEMLL 497


HSP 2 Score: 32.3 bits (72), Expect = 4.2e-01
Identity = 19/70 (27.14%), Postives = 32/70 (45.71%), Query Frame = 1 

Query: 49  LRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSRIWHEMSENG--IS 108
           L F +   E  E+  ++ + G DP   TY  L++  C+ R+ + V  +  EM   G   S
Sbjct: 327 LCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSCS 386

Query: 109 PDRSSYMVLI 117
           P+  ++  L+
Sbjct: 387 PNDVTFSYLL 396

[Close]
BLAST of ClCG05G000460 vs. TAIR10
Match: AT1G80880.1 (AT1G80880.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-13
Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = 1 

Query: 38  LCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSRIW 97
           L PT+ T+HAFL  +  E+ + E+L +M+     PT ET+++++ K  + +Q +N  +IW
Sbjct: 395 LSPTVDTFHAFLEAVNFEKTL-EVLGQMKISDLGPTEETFLLILGKLFKGKQPENALKIW 454

Query: 98  HEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEILQ 152
            EM    I  + + Y+  I GL   G LE A + Y EMK K  +  P + ++L+
Sbjct: 455 AEMDRFEIVANPALYLATIQGLLSCGWLEKAREIYSEMKSKGFVGNPMLQKLLE 507


HSP 2 Score: 43.9 bits (102), Expect = 1.4e-04
Identity = 26/89 (29.21%), Postives = 41/89 (46.07%), Query Frame = 1 

Query: 75  ETYIMLIRKFCR-WRQLDNVSRIWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYL 134
           E + +++  +C  W  +    RIW EM    I+P++ SY  +I      G L D+ + Y 
Sbjct: 259 EGFNVILNGWCNIWTDVTEAKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFDSLRLYD 318

Query: 135 EMKEKELLPEPKIDEILQAWLAGKPMFQE 163
           EMK++ L P  ++   L   L  +  F E
Sbjct: 319 EMKKRGLAPGIEVYNSLVYVLTREDCFDE 347

[Close]
BLAST of ClCG05G000460 vs. TAIR10
Match: AT1G71060.1 (AT1G71060.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12
Identity = 36/108 (33.33%), Postives = 53/108 (49.07%), Query Frame = 1 

Query: 35  LRGLCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVS 94
           L+G+ P  +TY   L  L   +   E  E  + M C+PT  TY +++R FC   +LD   
Sbjct: 365 LKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEPTVSTYEIMVRMFCNKERLDMAI 424

Query: 95  RIWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLP 143
           +IW EM   G+ P    +  LI  L    KL++A +Y+ EM +  + P
Sbjct: 425 KIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRP 472

[Close]
BLAST of ClCG05G000460 vs. TAIR10
Match: AT5G65820.1 (AT5G65820.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 9.0e-12
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1 

Query: 36  RGLCPTIQTY-HAFLRFLRTE--EEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDN 95
           +GL P+  TY H  +   + E  EE  EL+EKMR++   P    Y ++IR  C+  ++  
Sbjct: 386 KGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKE 445

Query: 96  VSRIWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKEL 141
             R+W+EM ENG+SP   +++++I+GL   G L +A  ++ EM  + L
Sbjct: 446 AVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGL 493


HSP 2 Score: 44.7 bits (104), Expect = 8.1e-05
Identity = 27/106 (25.47%), Postives = 49/106 (46.23%), Query Frame = 1 

Query: 36  RGLCPTIQTYHAFLRFL---RTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDN 95
           RG  P    Y   ++ L      EE  ++  +M +  C+    TY  L+  FC+W ++D 
Sbjct: 316 RGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDK 375

Query: 96  VSRIWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEK 139
              +  +M + G+ P   +YM   H +  + K +++++  LE+ EK
Sbjct: 376 CYIVLDDMIKKGLMPSELTYM---HIMVAHEK-KESFEECLELMEK 417

[Close]
BLAST of ClCG05G000460 vs. NCBI nr
Match: gi|659074841|ref|XP_008437825.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis melo])

HSP 1 Score: 303.9 bits (777), Expect = 2.1e-79
Identity = 145/160 (90.62%), Postives = 154/160 (96.25%), Query Frame = 1 

Query: 36  RGLCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSR 95
           RGLCPTIQTYHAFLRFLRTEEEIFELL+KMR MGC+PTA+TYIMLIRKFCRWRQLDNVSR
Sbjct: 434 RGLCPTIQTYHAFLRFLRTEEEIFELLKKMRTMGCNPTADTYIMLIRKFCRWRQLDNVSR 493

Query: 96  IWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEILQAWLA 155
           IWHEMSENGISPDRSSY+VLIHGLFLNGKLEDA+KYYLEMKEKELLPEPKIDE+LQAWLA
Sbjct: 494 IWHEMSENGISPDRSSYIVLIHGLFLNGKLEDAHKYYLEMKEKELLPEPKIDEVLQAWLA 553

Query: 156 GKPMFQEKPSDCSGEGKNSRLFPKRIDFHRQPEIRKVSRD 196
           G+ MFQE PSDCSGEGKNSRLFP++ DFHRQPEI K SRD
Sbjct: 554 GRSMFQENPSDCSGEGKNSRLFPEK-DFHRQPEIIKGSRD 592

[Close]
BLAST of ClCG05G000460 vs. NCBI nr
Match: gi|659074841|ref|XP_008437825.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis melo])

HSP 1 Score: 35.8 bits (81), Expect = 1.1e+02
Identity = 19/72 (26.39%), Postives = 35/72 (48.61%), Query Frame = 1 

Query: 75  ETYIMLIRKFCRWRQLDNVSRIWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLE 134
           +++ +++  +C    L +  R+W EM+  GIS D  SY   I        L    K + +
Sbjct: 301 KSFNIILNGWCIIGSLRDTERVWKEMTRRGISHDAISYASSISCYSKVRNLHKVLKLFED 360

Query: 135 MKEKELLPEPKI 147
           MK  ++ P+ K+
Sbjct: 361 MKRMKIDPDRKV 372


HSP 2 Score: 303.5 bits (776), Expect = 2.8e-79
Identity = 142/159 (89.31%), Postives = 151/159 (94.97%), Query Frame = 1 

Query: 36  RGLCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSR 95
           RGLCPTIQTYHAFLRFLRTEEEIFELL+KMR MGC+PT +TYIMLIRKFCRWRQLDNVSR
Sbjct: 434 RGLCPTIQTYHAFLRFLRTEEEIFELLKKMRTMGCNPTTDTYIMLIRKFCRWRQLDNVSR 493

Query: 96  IWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEILQAWLA 155
           IWHEMSENGISPDRSSY+VLIHGLFLNGKLEDA+KYYLEMKEK+LLPEPKIDE+LQ WLA
Sbjct: 494 IWHEMSENGISPDRSSYIVLIHGLFLNGKLEDAHKYYLEMKEKDLLPEPKIDEVLQTWLA 553

Query: 156 GKPMFQEKPSDCSGEGKNSRLFPKRIDFHRQPEIRKVSR 195
           GK +FQE PSDCSGEGKNS LFP + DFHRQPEIRKVSR
Sbjct: 554 GKSVFQENPSDCSGEGKNSSLFPNKNDFHRQPEIRKVSR 592

[Close]
BLAST of ClCG05G000460 vs. NCBI nr
Match: gi|778676742|ref|XP_011650654.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis sativus])

HSP 1 Score: 35.0 bits (79), Expect = 1.8e+02
Identity = 18/72 (25.00%), Postives = 35/72 (48.61%), Query Frame = 1 

Query: 75  ETYIMLIRKFCRWRQLDNVSRIWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLE 134
           +++ +++  +C    L +  R+W EM+  GIS D  SY   I        L    + + +
Sbjct: 301 KSFNIILNGWCVIGSLRDTERVWKEMTRRGISHDAVSYASCISCYSKVRNLHKVLRLFED 360

Query: 135 MKEKELLPEPKI 147
           MK  ++ P+ K+
Sbjct: 361 MKRMKIDPDRKV 372


HSP 2 Score: 214.5 bits (545), Expect = 1.7e-52
Identity = 103/163 (63.19%), Postives = 125/163 (76.69%), Query Frame = 1 

Query: 36  RGLCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSR 95
           RG+ PT++TYHA LR LRT EE+FE L+KM  MGC PT +TYIMLIRKFCRWRQLDNV +
Sbjct: 407 RGIHPTVRTYHALLRCLRTGEEVFEQLQKMNMMGCIPTHDTYIMLIRKFCRWRQLDNVFK 466

Query: 96  IWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEILQAWLA 155
           +W EMS+NG+  DRSSY+VLIHGLFLNGK+E++YKYY EMK+K LL EPK+DE+LQAW+A
Sbjct: 467 LWDEMSKNGLDHDRSSYIVLIHGLFLNGKIEESYKYYQEMKQKGLLSEPKVDEMLQAWVA 526

Query: 156 GKPMFQEKPSDCSGEGKNSRLF---PKRIDFHRQPEIRKVSRD 196
           G+  FQE    CS E K    F    K  DF + PE R+V R+
Sbjct: 527 GRGDFQENKVTCSQENKERVKFEKADKERDFRKMPETRRVMRE 569

[Close]
BLAST of ClCG05G000460 vs. NCBI nr
Match: gi|694380597|ref|XP_009366416.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Pyrus x bretschneideri])

HSP 1 Score: 213.8 bits (543), Expect = 2.9e-52
Identity = 104/171 (60.82%), Postives = 132/171 (77.19%), Query Frame = 1 

Query: 36  RGLCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSR 95
           +GL PTIQTYHAF R LRT E++FELLEK++ +GC P  +TYIMLIRKFCRWRQLD+V +
Sbjct: 414 QGLLPTIQTYHAFFRILRTGEQVFELLEKIKSLGCHPNTDTYIMLIRKFCRWRQLDHVFK 473

Query: 96  IWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEILQAWLA 155
           +W EMSENG++PDRSSY+VLIHGLFLNGKLE+AYKYY+EMK+K+ LPEP+ +E+LQAWL+
Sbjct: 474 LWSEMSENGVNPDRSSYIVLIHGLFLNGKLEEAYKYYIEMKKKQYLPEPRTEEMLQAWLS 533

Query: 156 GKPMF-------QEKPSDCSGEGKNSRLFPKRI----DFHRQPEIRKVSRD 196
           GK +        ++   D S    N+R+ PK+     DF RQ E RKV R+
Sbjct: 534 GKQISTFHTTDKEDDQLDWSHLDMNARVTPKKSHQEKDFLRQLEARKVVRE 584

[Close]
BLAST of ClCG05G000460 vs. NCBI nr
Match: gi|694380597|ref|XP_009366416.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Pyrus x bretschneideri])

HSP 1 Score: 38.1 bits (87), Expect = 2.2e+01
Identity = 21/76 (27.63%), Postives = 36/76 (47.37%), Query Frame = 1 

Query: 40  PTIQTYHAFLRFL---RTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSRI 99
           P  + Y+A +  L   R   E   L++ M+  G  P   T+  +I+  C+ R++D   RI
Sbjct: 348 PDRKVYNALIYALGKGRLLNEAINLVKTMQDKGLTPNVVTFNSIIKPLCKARKIDEARRI 407

Query: 100 WHEMSENGISPDRSSY 113
             +M   G+ P   +Y
Sbjct: 408 LDDMLHQGLLPTIQTY 423


HSP 2 Score: 213.4 bits (542), Expect = 3.8e-52
Identity = 114/211 (54.03%), Postives = 145/211 (68.72%), Query Frame = 1 

Query: 4   KTLTACAFHSDRVNLPAVIVSPYNSNSLISAL--------RGLCPTIQTYHAFLRFLRTE 63
           KT+    F  D V   ++I+    S  L  A         RGL PT++TYHAF R LRT 
Sbjct: 381 KTMDEEGFTPDAVTYNSLIMPLCKSRLLDEAKQVFDEMTERGLRPTVRTYHAFFRVLRTG 440

Query: 64  EEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSRIWHEMSENGISPDRSSYMVL 123
           EE+FELL++MR  GC P+ +TYIMLIRKFCRWRQLDNV ++W EMS+NG+ PDRSSY+VL
Sbjct: 441 EEVFELLQRMRMTGCHPSHDTYIMLIRKFCRWRQLDNVFKLWTEMSKNGLDPDRSSYIVL 500

Query: 124 IHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEILQAWLAGKP-------MFQEKPSDCS 183
           IHGLFLNG+L++A+KYYLEMKEK LLPEPKID +LQAW+AGK          ++   + S
Sbjct: 501 IHGLFLNGRLDEAHKYYLEMKEKHLLPEPKIDAMLQAWVAGKTDAGWHVIASKDDQFNSS 560

Query: 184 GEGKNSRLFPKR----IDFHRQPEIRKVSRD 196
             G+ +R   KR    I+F RQPE+R V+R+
Sbjct: 561 ELGEKTRDRSKRNHRDINFRRQPELRSVTRE 591

The following BLAST results are available for this feature:
BLAST of ClCG05G000460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP383_ARATH5.1e-4955.21Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidop... [more]
PP233_ARATH3.3e-1633.04Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis th... [more]
PP137_ARATH2.2e-1234.21Pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Arabidop... [more]
PP112_ARATH2.5e-1133.33Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidop... [more]
PP447_ARATH1.6e-1035.19Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis th... [more]
BLAST of ClCG05G000460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L308_CUCSA1.9e-7989.31Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118150 PE=4 SV=1[more]
A0A0A0L308_CUCSA1.3e+0225.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118150 PE=4 SV=1[more]
B9I5U4_POPTR2.3e+0030.38Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POP... [more]
U7DWX5_POPTR3.0e+0030.38Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0671s00210g PE=4 SV=1[more]
F6I5J0_VITVI6.8e+0027.27Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00030 PE=4 SV=... [more]
BLAST of ClCG05G000460 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G15010.12.9e-5055.21 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G15200.11.9e-1733.04 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G80880.11.3e-1334.21 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G71060.11.4e-1233.33 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G65820.19.0e-1235.19 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of ClCG05G000460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074841|ref|XP_008437825.1|2.1e-7990.63PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial ... [more]
gi|659074841|ref|XP_008437825.1|1.1e+0226.39PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial ... [more]
gi|778676742|ref|XP_011650654.1|1.8e+0225.00PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial ... [more]
gi|694380597|ref|XP_009366416.1|2.9e-5260.82PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial ... [more]
gi|694380597|ref|XP_009366416.1|2.2e+0127.63PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009451 RNA modification
cellular_component GO:0005575 cellular_component
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0003674 molecular_function
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G000460.1ClCG05G000460.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 76..119
score: 1.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 76..108
score: 1.0E-7coord: 111..142
score: 9.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 73..107
score: 10.742coord: 37..72
score: 5.272coord: 108..142
score: 10
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 36..185
score: 6.5
NoneNo IPR availablePANTHERPTHR24015:SF227SUBFAMILY NOT NAMEDcoord: 36..185
score: 6.5