ClCG03G012080 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G012080
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr03 : 24210461 .. 24210763 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATAAGAGATATAACTCCACCTACCTTGGCTAAGGAGCTCATGTCTCTTCTAACAAGTAGCCATTTTAATGGCGACAAGAATATAGTATCAACTACAACTTTGATTTTACTATCCATTGATTGTTTATCTTGCGTCAAGAACATCGGTGATTCCGTCCATGAGTTCGTTTTGTTTGCTCGATTCATGATTGGCCCAAGAATCAGTGATCGATCCGAAGAACCACTGCCAGATACGATTCTACTTCCCCTTCGTACTACCGAGATTCTTGCTCGGCTTTCTTTCAACTTAAGAAGGTAG

mRNA sequence

ATGGCAATAAGAGATATAACTCCACCTACCTTGGCTAAGGAGCTCATGTCTCTTCTAACAAGTAGCCATTTTAATGGCGACAAGAATATAGTATCAACTACAACTTTGATTTTACTATCCATTGATTGTTTATCTTGCGTCAAGAACATCGGTGATTCCGTCCATGAGTTCGTTTTGTTTGCTCGATTCATGATTGGCCCAAGAATCAGTGATCGATCCGAAGAACCACTGCCAGATACGATTCTACTTCCCCTTCGTACTACCGAGATTCTTGCTCGGCTTTCTTTCAACTTAAGAAGGTAG

Coding sequence (CDS)

ATGGCAATAAGAGATATAACTCCACCTACCTTGGCTAAGGAGCTCATGTCTCTTCTAACAAGTAGCCATTTTAATGGCGACAAGAATATAGTATCAACTACAACTTTGATTTTACTATCCATTGATTGTTTATCTTGCGTCAAGAACATCGGTGATTCCGTCCATGAGTTCGTTTTGTTTGCTCGATTCATGATTGGCCCAAGAATCAGTGATCGATCCGAAGAACCACTGCCAGATACGATTCTACTTCCCCTTCGTACTACCGAGATTCTTGCTCGGCTTTCTTTCAACTTAAGAAGGTAG

Protein sequence

MAIRDITPPTLAKELMSLLTSSHFNGDKNIVSTTTLILLSIDCLSCVKNIGDSVHEFVLFARFMIGPRISDRSEEPLPDTILLPLRTTEILARLSFNLRR

Homology

[Close]

BLAST of ClCG03G012080 vs. TrEMBL
Match: A0A0A0LZX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G630340 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-13
Identity = 45/73 (61.64%), Postives = 49/73 (67.12%), Query Frame = 1


Query: 1   MAIRDITPPTLAKE-----------LMSLLTSSHFNGDKNIVSTTTLILLSIDCLSCVKN 60
           MAIRDI PP +AK            LMSLL SSHFNGD  +VSTTTLI L IDCLSCV+ 
Sbjct: 77  MAIRDIIPPAMAKSHTEKAKEKAEALMSLLKSSHFNGDMKMVSTTTLIYLLIDCLSCVEK 136

Query: 61  IGDSVHEFVLFAR 63
           I DSVH+ V  AR
Sbjct: 137 IVDSVHDLVSLAR 149

[Close]

BLAST of ClCG03G012080 vs. NCBI nr
Match: gi|700211483|gb|KGN66579.1| (hypothetical protein Csa_1G630340 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 45/73 (61.64%), Postives = 49/73 (67.12%), Query Frame = 1


Query: 1   MAIRDITPPTLAKE-----------LMSLLTSSHFNGDKNIVSTTTLILLSIDCLSCVKN 60
           MAIRDI PP +AK            LMSLL SSHFNGD  +VSTTTLI L IDCLSCV+ 
Sbjct: 77  MAIRDIIPPAMAKSHTEKAKEKAEALMSLLKSSHFNGDMKMVSTTTLIYLLIDCLSCVEK 136

Query: 61  IGDSVHEFVLFAR 63
           I DSVH+ V  AR
Sbjct: 137 IVDSVHDLVSLAR 149

[Close]

BLAST of ClCG03G012080 vs. NCBI nr
Match: gi|449442737|ref|XP_004139137.1| (PREDICTED: aluminum-activated malate transporter 2 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 45/73 (61.64%), Postives = 49/73 (67.12%), Query Frame = 1


Query: 1   MAIRDITPPTLAKE-----------LMSLLTSSHFNGDKNIVSTTTLILLSIDCLSCVKN 60
           MAIRDI PP +AK            LMSLL SSHFNGD  +VSTTTLI L IDCLSCV+ 
Sbjct: 342 MAIRDIIPPAMAKSHTEKAKEKAEALMSLLKSSHFNGDMKMVSTTTLIYLLIDCLSCVEK 401

Query: 61  IGDSVHEFVLFAR 63
           I DSVH+ V  AR
Sbjct: 402 IVDSVHDLVSLAR 414

The following BLAST results are available for this feature:

BLAST of ClCG03G012080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZX9_CUCSA	7.6e-13	61.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G630340 PE=4 SV=1	[more]

BLAST of ClCG03G012080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211483\|gb\|KGN66579.1\|	1.1e-12	61.64	hypothetical protein Csa_1G630340 [Cucumis sativus]	[more]
gi\|449442737\|ref\|XP_004139137.1\|	1.1e-12	61.64	PREDICTED: aluminum-activated malate transporter 2 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015743	malate transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009705	plant-type vacuole membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0015140	malate transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G012080.1	ClCG03G012080.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G012080	Csa1G630340	Cucumber (Chinese Long) v2	cuwcgB043
ClCG03G012080	MELO3C015075	Melon (DHL92) v3.5.1	mewcgB241
ClCG03G012080	Bhi02G001200	Wax gourd	wcgwgoB370
ClCG03G012080	CSPI01G31350	Wild cucumber (PI 183967)	cpiwcgB046
ClCG03G012080	Cucsa.355840	Cucumber (Gy14) v1	cgywcgB606
ClCG03G012080	CmoCh11G009170	Cucurbita moschata (Rifu)	cmowcgB099
ClCG03G012080	Lsi06G006330	Bottle gourd (USVL1VR-Ls)	lsiwcgB364
ClCG03G012080	Cp4.1LG04g12580	Cucurbita pepo (Zucchini)	cpewcgB606
ClCG03G012080	CsGy1G030520	Cucumber (Gy14) v2	cgybwcgB041
ClCG03G012080	MELO3C015075.2	Melon (DHL92) v3.6.1	medwcgB232
ClCG03G012080	Carg22686	Silver-seed gourd	carwcgB0521
ClCG03G012080	CsaV3_1G043720	Cucumber (Chinese Long) v3	cucwcgB046

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G012080	Watermelon (97103) v2	wcgwmbB186
ClCG03G012080	Wax gourd	wcgwgoB362
ClCG03G012080	Cucumber (Gy14) v1	cgywcgB607
ClCG03G012080	Cucurbita maxima (Rimu)	cmawcgB054
ClCG03G012080	Cucurbita maxima (Rimu)	cmawcgB062
ClCG03G012080	Cucurbita maxima (Rimu)	cmawcgB112
ClCG03G012080	Cucurbita maxima (Rimu)	cmawcgB113
ClCG03G012080	Cucurbita moschata (Rifu)	cmowcgB045
ClCG03G012080	Cucurbita moschata (Rifu)	cmowcgB054
ClCG03G012080	Cucurbita moschata (Rifu)	cmowcgB101
ClCG03G012080	Wild cucumber (PI 183967)	cpiwcgB049
ClCG03G012080	Cucumber (Chinese Long) v2	cuwcgB046
ClCG03G012080	Melon (DHL92) v3.5.1	mewcgB245
ClCG03G012080	Cucurbita pepo (Zucchini)	cpewcgB014
ClCG03G012080	Cucurbita pepo (Zucchini)	cpewcgB324
ClCG03G012080	Cucurbita pepo (Zucchini)	cpewcgB327
ClCG03G012080	Cucumber (Gy14) v2	cgybwcgB043
ClCG03G012080	Silver-seed gourd	carwcgB0520
ClCG03G012080	Silver-seed gourd	carwcgB0944
ClCG03G012080	Silver-seed gourd	carwcgB0946
ClCG03G012080	Cucumber (Chinese Long) v3	cucwcgB050