ClCG03G010090 (gene) Watermelon (Charleston Gray)

NameClCG03G010090
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr03 : 17116634 .. 17116877 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGCTATCATTATTGGTATGGTCATATTGAGCCTAGTCCTTACCCACTCGAAATTGAAAATGGTATGGTCAATGGGGTAGTTTTATCCATGTCAAAACCTCTAGAGCTGCCACTGGATTTGTTGGTGTTATTGTATATCGTGGTCAAAATAATGATGGGAAATATTGTGATTGGATGGTATGTTGGTCCAACCCATTGAATCGAGCTTCGTGGAACAATACTGTGAGCCAATCCCCTTTT

mRNA sequence

ATGCTTGCTATCATTATTGGTATGGTCATATTGAGCCTAGTCCTTACCCACTCGAAATTGAAAATGGTATGGTCAATGGGTTTTATCCATGTCAAAACCTCTAGAGCTGCCACTGGATTTGTTGGTGTTATTGTATATCGTGGTCAAAATAATGATGGGAAATATTGTGATTGGATGGTATGTTGGTCCAACCCATTGAATCGAGCTTCGTGGAACAATACTGTGAGCCAATCCCCTTTT

Coding sequence (CDS)

ATGCTTGCTATCATTATTGGTATGGTCATATTGAGCCTAGTCCTTACCCACTCGAAATTGAAAATGGTATGGTCAATGGGTTTTATCCATGTCAAAACCTCTAGAGCTGCCACTGGATTTGTTGGTGTTATTGTATATCGTGGTCAAAATAATGATGGGAAATATTGTGATTGGATGGTATGTTGGTCCAACCCATTGAATCGAGCTTCGTGGAACAATACTGTGAGCCAATCCCCTTTT

Protein sequence

MLAIIIGMVILSLVLTHSKLKMVWSMGFIHVKTSRAATGFVGVIVYRGQNNDGKYCDWMVCWSNPLNRASWNNTVSQSPF
BLAST of ClCG03G010090 vs. TrEMBL
Match: A0A0A0KYK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G455670 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.7e-11
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1

Query: 27 GFIHVKTSRAATGFVGVIVYRGQNNDGKYCDWMVCWSNPLNRASWNNTVSQ 78
          GF+HVKTS  ATG    +VYRG NN+G++CDWM  WSNP NR++ +NTVS+
Sbjct: 48 GFLHVKTSGTATGSSAAVVYRGVNNNGQHCDWMAAWSNPWNRSTSDNTVSK 98

BLAST of ClCG03G010090 vs. TrEMBL
Match: A0A097BU21_CITLA (23 kDa jasmonate-induced protein OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.2e-10
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 1

Query: 27  GFIHVKTSRAATGFVGVIVYRGQNNDGKYCDWMVCWSNPLNRASWNNT 75
           GF+HVKTS  ATG     VYRG NNDG  CDWM+ WSNP NR+S +NT
Sbjct: 105 GFLHVKTSGTATGSSAACVYRGLNNDGVVCDWMLAWSNPWNRSSSDNT 152

BLAST of ClCG03G010090 vs. TrEMBL
Match: A0A0A0M0F4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G642550 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1

Query: 28  FIHVKTSRAATGFVGVIVYRGQNNDGKYCDWMVCWSNPLNRASWNN 74
           F+HVKT+   +G     VYRGQNN+G+ CDWMV WSNP +R   +N
Sbjct: 106 FLHVKTAVVPSGSAASCVYRGQNNNGQLCDWMVAWSNPYHRLFADN 151

BLAST of ClCG03G010090 vs. TrEMBL
Match: A8I775_CHLRE (Predicted protein OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_134489 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.2e-06
Identity = 26/49 (53.06%), Postives = 31/49 (63.27%), Query Frame = 1

Query: 27  GFIHVKTSRAATGFVGVIVYRGQNNDGKYCDWMVCWSNPLNRASWNNTV 76
           GF+HVKT  AA G  G +VYR    DG   D+M+ WSNP  R SW+N V
Sbjct: 107 GFLHVKTGGAAVGSTGAVVYRATVLDGTKHDFMLAWSNPFARGSWDNAV 155

BLAST of ClCG03G010090 vs. NCBI nr
Match: gi|700199602|gb|KGN54760.1| (hypothetical protein Csa_4G455670 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 8.1e-11
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1

Query: 27 GFIHVKTSRAATGFVGVIVYRGQNNDGKYCDWMVCWSNPLNRASWNNTVSQ 78
          GF+HVKTS  ATG    +VYRG NN+G++CDWM  WSNP NR++ +NTVS+
Sbjct: 48 GFLHVKTSGTATGSSAAVVYRGVNNNGQHCDWMAAWSNPWNRSTSDNTVSK 98

BLAST of ClCG03G010090 vs. NCBI nr
Match: gi|694188379|gb|AIS71930.1| (23 kDa jasmonate-induced protein [Citrullus lanatus])

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-09
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 1

Query: 27  GFIHVKTSRAATGFVGVIVYRGQNNDGKYCDWMVCWSNPLNRASWNNT 75
           GF+HVKTS  ATG     VYRG NNDG  CDWM+ WSNP NR+S +NT
Sbjct: 105 GFLHVKTSGTATGSSAACVYRGLNNDGVVCDWMLAWSNPWNRSSSDNT 152

BLAST of ClCG03G010090 vs. NCBI nr
Match: gi|658027879|ref|XP_008349366.1| (PREDICTED: 23 kDa jasmonate-induced protein-like [Malus domestica])

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-08
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 1

Query: 28  FIHVKTSRAATGFVGVIVYRGQNNDGKYCDWMVCWSNPLNRASWNNTVS 77
           F+HVKT+  ATG V  +VYRG+N  G  CDWM+ W NP NR  + NTVS
Sbjct: 104 FLHVKTAGQATGSVAAVVYRGKNAVGSICDWMLAWRNPWNRHLFTNTVS 152

BLAST of ClCG03G010090 vs. NCBI nr
Match: gi|694407171|ref|XP_009378340.1| (PREDICTED: 23 kDa jasmonate-induced protein-like [Pyrus x bretschneideri])

HSP 1 Score: 64.7 bits (156), Expect = 8.4e-08
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1

Query: 28  FIHVKTSRAATGFVGVIVYRGQNNDGKYCDWMVCWSNPLNRASWNNTV 76
           F+HVKT+  A+G    +VYRG + +G  CDWM+ WSNP +R  W+NTV
Sbjct: 106 FLHVKTAGEASGSTAAVVYRGTDKNGTECDWMLSWSNPWDRTKWDNTV 153

BLAST of ClCG03G010090 vs. NCBI nr
Match: gi|1009173940|ref|XP_015868084.1| (PREDICTED: 23 kDa jasmonate-induced protein-like [Ziziphus jujuba])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1

Query: 28  FIHVKTSRAATGFVGVIVYRGQNNDGKYCDWMVCWSNPLNRASWNNTV 76
           ++HV  S AA+G V   VYRG+N DG  CDWM+ W+NP NR  +NNTV
Sbjct: 107 YLHVHDSGAASGSVAATVYRGKNGDGDECDWMISWNNPWNRWFFNNTV 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KYK3_CUCSA5.7e-1160.78Uncharacterized protein OS=Cucumis sativus GN=Csa_4G455670 PE=4 SV=1[more]
A0A097BU21_CITLA8.2e-1064.5823 kDa jasmonate-induced protein OS=Citrullus lanatus PE=2 SV=1[more]
A0A0A0M0F4_CUCSA1.4e-0654.35Uncharacterized protein OS=Cucumis sativus GN=Csa_1G642550 PE=4 SV=1[more]
A8I775_CHLRE4.2e-0653.06Predicted protein OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_134489 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700199602|gb|KGN54760.1|8.1e-1160.78hypothetical protein Csa_4G455670 [Cucumis sativus][more]
gi|694188379|gb|AIS71930.1|1.2e-0964.5823 kDa jasmonate-induced protein [Citrullus lanatus][more]
gi|658027879|ref|XP_008349366.1|6.4e-0857.14PREDICTED: 23 kDa jasmonate-induced protein-like [Malus domestica][more]
gi|694407171|ref|XP_009378340.1|8.4e-0852.08PREDICTED: 23 kDa jasmonate-induced protein-like [Pyrus x bretschneideri][more]
gi|1009173940|ref|XP_015868084.1|1.1e-0756.25PREDICTED: 23 kDa jasmonate-induced protein-like [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G010090.1ClCG03G010090.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36482FAMILY NOT NAMEDcoord: 27..75
score: 4.5
NoneNo IPR availablePANTHERPTHR36482:SF2SUBFAMILY NOT NAMEDcoord: 27..75
score: 4.5

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG03G010090Bhi02G001137Wax gourdwcgwgoB369
ClCG03G010090Cucsa.356110Cucumber (Gy14) v1cgywcgB605
ClCG03G010090Lsi06G006650Bottle gourd (USVL1VR-Ls)lsiwcgB361
ClCG03G010090CsaV3_1G044030Cucumber (Chinese Long) v3cucwcgB041
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G010090Watermelon (97103) v2wcgwmbB186
ClCG03G010090Watermelon (97103) v1wcgwmB225