ClCG03G001590 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G001590
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Cyclin-dependent protein kinase inhibitor SMR3
Location	CG_Chr03 : 1549939 .. 1550247 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTCACTTTTCTTCTTACATACGTCAATTCCAAAGAAGAAGAAGAAGAAGAGAAAAATGGAAGCAACTTAGTTGTTGAAGATGACGACAATGGGTTCAAAACTCCAACATCTTTGGAGCATAAAATTCCGACAAGTCTCCGGTGTCCAATGGCGCCGAGGAAACCAAAACCTCGGCCATTGATGAAGCGGAAGGCGGCAGAACGACACCGTTTGTTGCTGGATCTTTCCTCTGAGATTCAGTCTTTGTTTCCAGCTGATTTTCTTGTAGGCCTTGGTGGTAAGATCAAGAGGATTAGACAATAA

mRNA sequence

ATGGAGTTCACTTTTCTTCTTACATACGTCAATTCCAAAGAAGAAGAAGAAGAAGAGAAAAATGGAAGCAACTTAGTTGTTGAAGATGACGACAATGGGTTCAAAACTCCAACATCTTTGGAGCATAAAATTCCGACAAGTCTCCGGTGTCCAATGGCGCCGAGGAAACCAAAACCTCGGCCATTGATGAAGCGGAAGGCGGCAGAACGACACCGTTTGTTGCTGGATCTTTCCTCTGAGATTCAGTCTTTGTTTCCAGCTGATTTTCTTGTAGGCCTTGGTGGTAAGATCAAGAGGATTAGACAATAA

Coding sequence (CDS)

ATGGAGTTCACTTTTCTTCTTACATACGTCAATTCCAAAGAAGAAGAAGAAGAAGAGAAAAATGGAAGCAACTTAGTTGTTGAAGATGACGACAATGGGTTCAAAACTCCAACATCTTTGGAGCATAAAATTCCGACAAGTCTCCGGTGTCCAATGGCGCCGAGGAAACCAAAACCTCGGCCATTGATGAAGCGGAAGGCGGCAGAACGACACCGTTTGTTGCTGGATCTTTCCTCTGAGATTCAGTCTTTGTTTCCAGCTGATTTTCTTGTAGGCCTTGGTGGTAAGATCAAGAGGATTAGACAATAA

Protein sequence

MEFTFLLTYVNSKEEEEEEKNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLDLSSEIQSLFPADFLVGLGGKIKRIRQ

Homology

[Close]

BLAST of ClCG03G001590 vs. TrEMBL
Match: A0A0A0LY05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G506960 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.3e-39
Identity = 86/109 (78.90%), Postives = 93/109 (85.32%), Query Frame = 1


Query: 1   MEFTFLLTYVNSKEEEEEE-------KNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMA 60
           MEFTFLL YVNSKE+++EE         G +  VEDDDNGFKTPTSLEHKIPTSL+CPMA
Sbjct: 18  MEFTFLLRYVNSKEDDQEEDGQEETLNGGRSNSVEDDDNGFKTPTSLEHKIPTSLQCPMA 77

Query: 61  PRKPKPRPLMKRKAAERHRLLLDLSSEIQSLFPADFLVGLGGKIKRIRQ 103
           PRKPKPR L KRKA ERHRLLLDLSSEIQSLFPA+FLVGLGGKIKR+RQ
Sbjct: 78  PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ 126

[Close]

BLAST of ClCG03G001590 vs. TrEMBL
Match: W9RU29_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025220 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 1


Query: 26  VVEDDDN------GFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAA-ERHRLLLDLS 85
           V+ED +N      GFKTPTSL+HKIP +L+CP APRKPK  P  KR+    R R+LLDL+
Sbjct: 82  VLEDQENHVGVVDGFKTPTSLDHKIPATLKCPPAPRKPKSLPSTKRRLPISRRRVLLDLT 141

Query: 86  SEIQSLFPADFLVGLGGKIKRIRQ 103
           SEI+SLFP   L  LGGKIK++RQ
Sbjct: 142 SEIESLFPPAILADLGGKIKKVRQ 165

[Close]

BLAST of ClCG03G001590 vs. TrEMBL
Match: W9RU29_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025220 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.7e-17
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 1


Query: 17  EEEKNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRK-AAERHRLLL 76
           E+++N   +V     +GFKTPTSL+HKIP +L+CP APRKPK  P  KR+    R R+LL
Sbjct: 84  EDQENHVGVV-----DGFKTPTSLDHKIPATLKCPPAPRKPKSLPSTKRRLPISRRRVLL 143

Query: 77  DLSSEIQSLFPADFLVGLGGKIKRIRQ 103
           DL+SEI+SLFP   L  LGGKIK++RQ
Sbjct: 144 DLTSEIESLFPPAILADLGGKIKKVRQ 165

HSP 2 Score: 96.3 bits (238), Expect = 2.3e-17
Identity = 50/89 (56.18%), Postives = 62/89 (69.66%), Query Frame = 1


Query: 14  EEEEEEKNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRL 73
           +E+E+E+       +D D+G KTPTSL HKIPT L CP APRKPK  P  KRK+  R R+
Sbjct: 85  QEQEQEQ-------QDLDDGCKTPTSLNHKIPTLLPCPPAPRKPKSLPSNKRKSPARRRV 144

Query: 74  LLDLSSEIQSLFPADFLVGLGGKIKRIRQ 103
           LLDLS+EI+SLFP      LG KIK++RQ
Sbjct: 145 LLDLSNEIESLFPPALRADLGAKIKKVRQ 166

[Close]

BLAST of ClCG03G001590 vs. TrEMBL
Match: A0A067LAL5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05695 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-17
Identity = 56/108 (51.85%), Postives = 65/108 (60.19%), Query Frame = 1


Query: 13  KEEEEEEKNGSNLVV----------------EDDDNGFKTPTSLEHKIPTSLRCPMAPRK 72
           KEEEEE+     L+V                +DDD+GFKTPTSL+ KIP  L CP APRK
Sbjct: 63  KEEEEEKDRKCKLLVSALKIELPSLEEVKINQDDDDGFKTPTSLDQKIPIILPCPPAPRK 122

Query: 73  PKPRPLMKRK--AAERHRLLLDLSSEIQSLFPADFLVGLGGKIKRIRQ 103
           PK  P  KRK  A    R+LLDLS+EI+SLFP      LGGKIK+ RQ
Sbjct: 123 PKSLPTNKRKSLAPPGRRVLLDLSNEIESLFPPSLRADLGGKIKKTRQ 170

[Close]

BLAST of ClCG03G001590 vs. TrEMBL
Match: A5C878_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035530 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.0e-17
Identity = 60/106 (56.60%), Postives = 70/106 (66.04%), Query Frame = 1


Query: 13  KEEEEEEK----------NGSNL----VVEDDDN-GFKTPTSLEHKIPTSLRCPMAPRKP 72
           +EE+EEEK            S+L    V EDDDN GFKTPTS++HKIP  L CP AP+KP
Sbjct: 108 REEQEEEKCKVKVTPMDLKMSSLAEFKVEEDDDNDGFKTPTSVDHKIPLILPCPPAPKKP 167

Query: 73  KPRPLMKRKAA-ERHRLLLDLSSEIQSLFPADFLVGLGGKIKRIRQ 103
           K  P  KR+AA    R+LLDLS+EIQSLFP DF    GGK KR+RQ
Sbjct: 168 KSLPSTKRRAAGPNRRVLLDLSNEIQSLFPPDF----GGKSKRLRQ 209

[Close]

BLAST of ClCG03G001590 vs. NCBI nr
Match: gi|778661446|ref|XP_011658114.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.8e-39
Identity = 86/109 (78.90%), Postives = 93/109 (85.32%), Query Frame = 1


Query: 1   MEFTFLLTYVNSKEEEEEE-------KNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMA 60
           MEFTFLL YVNSKE+++EE         G +  VEDDDNGFKTPTSLEHKIPTSL+CPMA
Sbjct: 18  MEFTFLLRYVNSKEDDQEEDGQEETLNGGRSNSVEDDDNGFKTPTSLEHKIPTSLQCPMA 77

Query: 61  PRKPKPRPLMKRKAAERHRLLLDLSSEIQSLFPADFLVGLGGKIKRIRQ 103
           PRKPKPR L KRKA ERHRLLLDLSSEIQSLFPA+FLVGLGGKIKR+RQ
Sbjct: 78  PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ 126

[Close]

BLAST of ClCG03G001590 vs. NCBI nr
Match: gi|703137513|ref|XP_010106463.1| (hypothetical protein L484_025220 [Morus notabilis])

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-17
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 1


Query: 26  VVEDDDN------GFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAA-ERHRLLLDLS 85
           V+ED +N      GFKTPTSL+HKIP +L+CP APRKPK  P  KR+    R R+LLDL+
Sbjct: 82  VLEDQENHVGVVDGFKTPTSLDHKIPATLKCPPAPRKPKSLPSTKRRLPISRRRVLLDLT 141

Query: 86  SEIQSLFPADFLVGLGGKIKRIRQ 103
           SEI+SLFP   L  LGGKIK++RQ
Sbjct: 142 SEIESLFPPAILADLGGKIKKVRQ 165

[Close]

BLAST of ClCG03G001590 vs. NCBI nr
Match: gi|703137513|ref|XP_010106463.1| (hypothetical protein L484_025220 [Morus notabilis])

HSP 1 Score: 94.7 bits (234), Expect = 9.7e-17
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 1


Query: 17  EEEKNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRK-AAERHRLLL 76
           E+++N   +V     +GFKTPTSL+HKIP +L+CP APRKPK  P  KR+    R R+LL
Sbjct: 84  EDQENHVGVV-----DGFKTPTSLDHKIPATLKCPPAPRKPKSLPSTKRRLPISRRRVLL 143

Query: 77  DLSSEIQSLFPADFLVGLGGKIKRIRQ 103
           DL+SEI+SLFP   L  LGGKIK++RQ
Sbjct: 144 DLTSEIESLFPPAILADLGGKIKKVRQ 165

HSP 2 Score: 96.3 bits (238), Expect = 3.3e-17
Identity = 50/89 (56.18%), Postives = 62/89 (69.66%), Query Frame = 1


Query: 14  EEEEEEKNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRL 73
           +E+E+E+       +D D+G KTPTSL HKIPT L CP APRKPK  P  KRK+  R R+
Sbjct: 95  QEQEQEQ-------QDLDDGCKTPTSLNHKIPTLLPCPPAPRKPKSLPSNKRKSPARRRV 154

Query: 74  LLDLSSEIQSLFPADFLVGLGGKIKRIRQ 103
           LLDLS+EI+SLFP      LG KIK++RQ
Sbjct: 155 LLDLSNEIESLFPPALRADLGAKIKKVRQ 176

[Close]

BLAST of ClCG03G001590 vs. NCBI nr
Match: gi|223526530|gb|EEF28791.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 96.3 bits (238), Expect = 3.3e-17
Identity = 50/89 (56.18%), Postives = 62/89 (69.66%), Query Frame = 1


Query: 14  EEEEEEKNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRL 73
           +E+E+E+       +D D+G KTPTSL HKIPT L CP APRKPK  P  KRK+  R R+
Sbjct: 85  QEQEQEQ-------QDLDDGCKTPTSLNHKIPTLLPCPPAPRKPKSLPSNKRKSPARRRV 144

Query: 74  LLDLSSEIQSLFPADFLVGLGGKIKRIRQ 103
           LLDLS+EI+SLFP      LG KIK++RQ
Sbjct: 145 LLDLSNEIESLFPPALRADLGAKIKKVRQ 166

[Close]

BLAST of ClCG03G001590 vs. NCBI nr
Match: gi|643738240|gb|KDP44228.1| (hypothetical protein JCGZ_05695 [Jatropha curcas])

HSP 1 Score: 95.9 bits (237), Expect = 4.3e-17
Identity = 56/108 (51.85%), Postives = 65/108 (60.19%), Query Frame = 1


Query: 13  KEEEEEEKNGSNLVV----------------EDDDNGFKTPTSLEHKIPTSLRCPMAPRK 72
           KEEEEE+     L+V                +DDD+GFKTPTSL+ KIP  L CP APRK
Sbjct: 63  KEEEEEKDRKCKLLVSALKIELPSLEEVKINQDDDDGFKTPTSLDQKIPIILPCPPAPRK 122

Query: 73  PKPRPLMKRK--AAERHRLLLDLSSEIQSLFPADFLVGLGGKIKRIRQ 103
           PK  P  KRK  A    R+LLDLS+EI+SLFP      LGGKIK+ RQ
Sbjct: 123 PKSLPTNKRKSLAPPGRRVLLDLSNEIESLFPPSLRADLGGKIKKTRQ 170

The following BLAST results are available for this feature:

BLAST of ClCG03G001590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY05_CUCSA	1.3e-39	78.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G506960 PE=4 SV=1	[more]
W9RU29_9ROSA	1.8e-17	59.52	Uncharacterized protein OS=Morus notabilis GN=L484_025220 PE=4 SV=1	[more]
W9RU29_9ROSA	6.7e-17	56.32	Uncharacterized protein OS=Morus notabilis GN=L484_025220 PE=4 SV=1	[more]
A0A067LAL5_JATCU	3.0e-17	51.85	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05695 PE=4 SV=1	[more]
A5C878_VITVI	4.0e-17	56.60	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035530 PE=4 SV=1	[more]

BLAST of ClCG03G001590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778661446\|ref\|XP_011658114.1\|	1.8e-39	78.90	PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis sativus]	[more]
gi\|703137513\|ref\|XP_010106463.1\|	2.5e-17	59.52	hypothetical protein L484_025220 [Morus notabilis]	[more]
gi\|703137513\|ref\|XP_010106463.1\|	9.7e-17	56.32	hypothetical protein L484_025220 [Morus notabilis]	[more]
gi\|223526530\|gb\|EEF28791.1\|	3.3e-17	56.18	conserved hypothetical protein [Ricinus communis]	[more]
gi\|643738240\|gb\|KDP44228.1\|	4.3e-17	51.85	hypothetical protein JCGZ_05695 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G001590.1	ClCG03G001590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33142	FAMILY NOT NAMED	coord: 13..102 score: 2.3
None	No IPR available	PANTHER	PTHR33142:SF6	EXPRESSED PROTEIN	coord: 13..102 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G001590	Csa1G506960	Cucumber (Chinese Long) v2	cuwcgB047
ClCG03G001590	MELO3C020645	Melon (DHL92) v3.5.1	mewcgB149
ClCG03G001590	Cla008248	Watermelon (97103) v1	wcgwmB223
ClCG03G001590	Cla97C03G052520	Watermelon (97103) v2	wcgwmbB186
ClCG03G001590	Bhi08G000536	Wax gourd	wcgwgoB340
ClCG03G001590	CSPI01G22970	Wild cucumber (PI 183967)	cpiwcgB050
ClCG03G001590	CmoCh01G006200	Cucurbita moschata (Rifu)	cmowcgB403
ClCG03G001590	Cp4.1LG02g13480	Cucurbita pepo (Zucchini)	cpewcgB500
ClCG03G001590	MELO3C020645.2	Melon (DHL92) v3.6.1	medwcgB141
ClCG03G001590	Carg12365	Silver-seed gourd	carwcgB0436
ClCG03G001590	CsaV3_1G034090	Cucumber (Chinese Long) v3	cucwcgB051

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G001590	Wild cucumber (PI 183967)	cpiwcgB220
ClCG03G001590	Wild cucumber (PI 183967)	cpiwcgB307
ClCG03G001590	Wild cucumber (PI 183967)	cpiwcgB483
ClCG03G001590	Cucumber (Chinese Long) v2	cuwcgB216
ClCG03G001590	Cucumber (Chinese Long) v2	cuwcgB461
ClCG03G001590	Melon (DHL92) v3.5.1	mewcgB328
ClCG03G001590	Watermelon (97103) v1	wcgwmB221
ClCG03G001590	Watermelon (97103) v1	wcgwmB239
ClCG03G001590	Cucurbita pepo (Zucchini)	cpewcgB278
ClCG03G001590	Cucurbita pepo (Zucchini)	cpewcgB467
ClCG03G001590	Cucurbita pepo (Zucchini)	cpewcgB673
ClCG03G001590	Bottle gourd (USVL1VR-Ls)	lsiwcgB066
ClCG03G001590	Bottle gourd (USVL1VR-Ls)	lsiwcgB185
ClCG03G001590	Cucumber (Gy14) v2	cgybwcgB044
ClCG03G001590	Cucumber (Gy14) v2	cgybwcgB199
ClCG03G001590	Melon (DHL92) v3.6.1	medwcgB322
ClCG03G001590	Silver-seed gourd	carwcgB0301
ClCG03G001590	Silver-seed gourd	carwcgB0331
ClCG03G001590	Silver-seed gourd	carwcgB0375
ClCG03G001590	Silver-seed gourd	carwcgB0974
ClCG03G001590	Cucumber (Chinese Long) v3	cucwcgB310
ClCG03G001590	Cucumber (Chinese Long) v3	cucwcgB481
ClCG03G001590	Watermelon (97103) v2	wcgwmbB180
ClCG03G001590	Watermelon (97103) v2	wcgwmbB176
ClCG03G001590	Watermelon (97103) v2	wcgwmbB188
ClCG03G001590	Wax gourd	wcgwgoB333
ClCG03G001590	Watermelon (Charleston Gray)	wcgwcgB049
ClCG03G001590	Watermelon (Charleston Gray)	wcgwcgB121
ClCG03G001590	Watermelon (Charleston Gray)	wcgwcgB141
ClCG03G001590	Cucumber (Gy14) v1	cgywcgB064
ClCG03G001590	Cucumber (Gy14) v1	cgywcgB315
ClCG03G001590	Cucumber (Gy14) v1	cgywcgB389
ClCG03G001590	Cucurbita maxima (Rimu)	cmawcgB194
ClCG03G001590	Cucurbita maxima (Rimu)	cmawcgB229
ClCG03G001590	Cucurbita maxima (Rimu)	cmawcgB554
ClCG03G001590	Cucurbita maxima (Rimu)	cmawcgB404
ClCG03G001590	Cucurbita maxima (Rimu)	cmawcgB502
ClCG03G001590	Cucurbita moschata (Rifu)	cmowcgB184
ClCG03G001590	Cucurbita moschata (Rifu)	cmowcgB551