ClCG02G017050 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G017050
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr02 : 31550232 .. 31550618 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAACATCGCCTTGTCGAAAGGAAACATGAAGCCACTGTTGGGCCGTGCGATGGATGTGTTTGGCAACACAATCAACGGCTCTCAGCCGTCCTACGTGGCACAGCCGAGCCGAGCCGATTCGGATGGGAGCGTCTCGGTTGCCGACAAGGAGTACATGTATCCACGTGGGATCACGAGGACTGTGGGGACCACTTCGAAGCGCACGTGTCAACCACCGACGTCCCATCCAGTTGACCGTAGATTGCGGGATCTTTGTACGGACTTCCCCCCTCTTTTTTTTCCCTTTCTTTTTATTATATATATATATATATATATATTTTTTTTTTTTGTTTCTCTTTCTTGTGTGTCCCCAGGTCTGGCTGCGTGTCCGCTTCACTGTTGA

mRNA sequence

ATGGAAAACATCGCCTTGTCGAAAGGAAACATGAAGCCACTGTTGGGCCGTGCGATGGATGTGTTTGGCAACACAATCAACGGCTCTCAGCCGTCCTACGTGGCACAGCCGAGCCGAGCCGATTCGGATGGGAGCGTCTCGGTTGCCGACAAGGAGTACATGTATCCACGTGGGATCACGAGGACTGTGGGGACCACTTCGAAGCGCACGTGTCAACCACCGACGTCCCATCCAGTTGACCGTAGATTGCGGGATCTTTGTCTGGCTGCGTGTCCGCTTCACTGTTGA

Coding sequence (CDS)

ATGGAAAACATCGCCTTGTCGAAAGGAAACATGAAGCCACTGTTGGGCCGTGCGATGGATGTGTTTGGCAACACAATCAACGGCTCTCAGCCGTCCTACGTGGCACAGCCGAGCCGAGCCGATTCGGATGGGAGCGTCTCGGTTGCCGACAAGGAGTACATGTATCCACGTGGGATCACGAGGACTGTGGGGACCACTTCGAAGCGCACGTGTCAACCACCGACGTCCCATCCAGTTGACCGTAGATTGCGGGATCTTTGTCTGGCTGCGTGTCCGCTTCACTGTTGA

Protein sequence

MENIALSKGNMKPLLGRAMDVFGNTINGSQPSYVAQPSRADSDGSVSVADKEYMYPRGITRTVGTTSKRTCQPPTSHPVDRRLRDLCLAACPLHC
Homology
[Close]
BLAST of ClCG02G017050 vs. TrEMBL
Match: A0A0A0LJ66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009540 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-13
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 1 

Query: 45 SVSVADKEYMYPRGITRTVGTTSKRTCQPPTSHPVDRRLRDL 87
          SVSVADKEYM PRGITRTVGTT KRTCQPPTSHPVDRRLRDL
Sbjct: 18 SVSVADKEYMDPRGITRTVGTTWKRTCQPPTSHPVDRRLRDL 59

[Close]
BLAST of ClCG02G017050 vs. NCBI nr
Match: gi|700205648|gb|KGN60767.1| (hypothetical protein Csa_2G009540 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 2.1e-13
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 1 

Query: 45 SVSVADKEYMYPRGITRTVGTTSKRTCQPPTSHPVDRRLRDL 87
          SVSVADKEYM PRGITRTVGTT KRTCQPPTSHPVDRRLRDL
Sbjct: 18 SVSVADKEYMDPRGITRTVGTTWKRTCQPPTSHPVDRRLRDL 59

The following BLAST results are available for this feature:
BLAST of ClCG02G017050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ66_CUCSA1.4e-1395.24Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009540 PE=4 SV=1[more]
BLAST of ClCG02G017050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205648|gb|KGN60767.1|2.1e-1395.24hypothetical protein Csa_2G009540 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G017050.1ClCG02G017050.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G017050Csa2G009540Cucumber (Chinese Long) v2cuwcgB122
ClCG02G017050Cla013618Watermelon (97103) v1wcgwmB197
ClCG02G017050Lsi11G004070Bottle gourd (USVL1VR-Ls)lsiwcgB098
ClCG02G017050CsGy2G002660Cucumber (Gy14) v2cgybwcgB119
ClCG02G017050CsaV3_2G003720Cucumber (Chinese Long) v3cucwcgB137
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G017050Cucurbita pepo (Zucchini)cpewcgB104
ClCG02G017050Cucurbita pepo (Zucchini)cpewcgB733
ClCG02G017050Cucurbita pepo (Zucchini)cpewcgB736
ClCG02G017050Melon (DHL92) v3.6.1medwcgB369
ClCG02G017050Silver-seed gourdcarwcgB0245
ClCG02G017050Silver-seed gourdcarwcgB1042
ClCG02G017050Watermelon (97103) v2wcgwmbB138
ClCG02G017050Wax gourdwcgwgoB260
ClCG02G017050Wax gourdwcgwgoB263
ClCG02G017050Cucumber (Gy14) v1cgywcgB218
ClCG02G017050Cucurbita maxima (Rimu)cmawcgB156
ClCG02G017050Cucurbita maxima (Rimu)cmawcgB695
ClCG02G017050Cucurbita moschata (Rifu)cmowcgB144
ClCG02G017050Cucurbita moschata (Rifu)cmowcgB700
ClCG02G017050Wild cucumber (PI 183967)cpiwcgB128
ClCG02G017050Melon (DHL92) v3.5.1mewcgB375