ClCG02G015580 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G015580
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 29854063 .. 29855869 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGGACCCAAAAAGCTTGGGGTTTCGTAATTTTGTATTGTTGCTTTCATGGCGAGCTTCGTTTCTCTGAGCTTCTCCGTTCCACAGTCCATTATCAAGGTAAATTCCGCTTCTCAACGCCTTCTTTTAATCGCATTTGTGGTTGCTTGCTGCGGAATCTCCTAGAATATGTACTCCGATTATTGTAATGTTCAACGTAACCGAGTGTTCCATTCAAAATTGCTTGTTTAGGTTGCTGTAATTCACCTCCCTGTTTTCTTCTACCTATTGGAAGACGATTTCGTTTTTTTTTTTTTTACTATTATTATGCTTTCCGGTGAACCATTTCGGCAGAGGAATCGTAATTCTGAGACTTTTGTTTTGGTTGGACATTCTTTCTGCGGATGCTTGGAATGTGTTTGGTGATTATCTGAGCTAAAATGGATTGAGATGGTGAATAGTTCTTTCCTCTGCAGAGAATGTCGTCAGAAGATTAAGTTTATGAGATTACATAAGAATTAGTGAGGATGTTTTTCTAATTTTGTTGTAATGATGGATCAGTGAGCAAACTTGATACGGTTCATACGTAGTTCCATTTCCAACTGTAGTTTTTTATTTAGCATCTTCAAGACATTAGTTCAGATGTTAAAATCATTGTCTGAAGCTCAGTCGTTAATTCTAAAATGATTGGAAATGGTTGAAGAATTATGAATGGTTGTTTATTTCTCTAGATTTAAAGGTTTTGATTGCACACTGACGGTGTTTTTCCTACTTATCTTTTGAACTTTGCGTCAGGAAATCCCACCACGGAAACTGGCTAAAGTTACGGTCGTTTCATGCCGAGCTGGAACAGGTTTCATTCTCATTTTTTGTATGGTTAATATTAGTGGGATCACCACCATTCTGAGGCATTTTAACTTAAAATTTCTATAGTTATATCTTATGTTCATCTTGCTCCGCCAATTACATTTATTGAAAAATAGAAAACCACTGCAAAATTGATCAAAACTGGAAAAGGTAATGATTGAATGAATGAAACAATGTACCATCACTTATGTAATATAATCCTGTACCCACCATATACTATCATGATTAGATTAGATTGAGAAAATTTTGGATTTCTGATTATATGAATTGCATTTGCAGCTTCGAAGCTTATGCTATCCTGTTGCTCAAATAAATCCATATCACTGAGTTGGGAAAGTTGTCATCCTGTACGGTTAACTTCAAGACCTTTTTGGGGCATAGTTTCTTCTAGTTCCAGGAATATGGTGTTATTAGCTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTATTGATCGGATTACTTAACTATTCAAATTTTAAATTCCATTTCATGACTTTCTTCTGCTTACTATGCCTGATCTTAGTCGAAGCATTGTATGCAATAGTCACTTTCACCAAAATGTCTGAAACGGCTTCCTGTTTGTGACATTTTTAACTTGTTTGGCCTGGGAAGATAGATAAGTAACTTAGTTGGTAGTTGCTGAGAGGCTACTAGATTTAGGATTGATCCTCATTGTCATGAAATGTGAGGATGGTACAAGCTTATAAGTATGAAGCTAGCAGGGACTAGTATCGGGCTTTTAGAACAAATGTGTATTTTGCCACCGTGAGCTTGGCTTAGTGGTATTCGTATGCGCTCCGTTCCTAGAGGTCGGAGGCTCAATCTCCCAACTCCGGAGTTTTTGTACTCAACAATATCTTGTTCTATCTTGAATTTGAGTGGAGAGATCAAGGATTCTGGAGGATCTAGTTTGTTAACTGATAAGAACCAACAATTTG

mRNA sequence

ACGGACCCAAAAAGCTTGGGGTTTCGTAATTTTGTATTGTTGCTTTCATGGCGAGCTTCGTTTCTCTGAGCTTCTCCGTTCCACAGTCCATTATCAAGGAAATCCCACCACGGAAACTGGCTAAAGTTACGGTCGTTTCATGCCGAGCTGGAACAGCTTCGAAGCTTATGCTATCCTGTTGCTCAAATAAATCCATATCACTGAGTTGGGAAAGTTGTCATCCTGTACGGTTAACTTCAAGACCTTTTTGGGGCATAGTTTCTTCTAGTTCCAGGAATATGGTGTTATTAGCTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTATTGATCGGATTACTTAACTATTCAAATTTTAAATTCCATTTCATGACTTTCTTCTGCTTACTATGCCTGATCTTAGTCGAAGCATTGTATGCAATAGTCACTTTCACCAAAATGTCTGAAACGGCTTCCTGTTTGTGACATTTTTAACTTGTTTGGCCTGGGAAGATAGATAAGTAACTTAGTTGGTAGTTGCTGAGAGGCTACTAGATTTAGGATTGATCCTCATTGTCATGAAATGTGAGGATGGTACAAGCTTATAAGTATGAAGCTAGCAGGGACTAGTATCGGGCTTTTAGAACAAATGTGTATTTTGCCACCGTGAGCTTGGCTTAGTGGTATTCGTATGCGCTCCGTTCCTAGAGGTCGGAGGCTCAATCTCCCAACTCCGGAGTTTTTGTACTCAACAATATCTTGTTCTATCTTGAATTTGAGTGGAGAGATCAAGGATTCTGGAGGATCTAGTTTGTTAACTGATAAGAACCAACAATTTG

Coding sequence (CDS)

ATGGCGAGCTTCGTTTCTCTGAGCTTCTCCGTTCCACAGTCCATTATCAAGGAAATCCCACCACGGAAACTGGCTAAAGTTACGGTCGTTTCATGCCGAGCTGGAACAGCTTCGAAGCTTATGCTATCCTGTTGCTCAAATAAATCCATATCACTGAGTTGGGAAAGTTGTCATCCTGTACGGTTAACTTCAAGACCTTTTTGGGGCATAGTTTCTTCTAGTTCCAGGAATATGGTGTTATTAGCTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTATTGATCGGATTACTTAA

Protein sequence

MASFVSLSFSVPQSIIKEIPPRKLAKVTVVSCRAGTASKLMLSCCSNKSISLSWESCHPVRLTSRPFWGIVSSSSRNMVLLAGYWVGPDVDDGWGYIEAFIDRIT

Homology

[Close]

BLAST of ClCG02G015580 vs. TrEMBL
Match: A0A0A0LJQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030030 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.3e-41
Identity = 87/105 (82.86%), Postives = 93/105 (88.57%), Query Frame = 1


Query: 1   MASFVSLSFSVPQSIIKEIPPRKLAKVTVVSCRAGTASKLMLSCCSNKSISLSWESCHPV 60
           MASFVSLSFSVPQ  +KEIPPRKLAK T+VS RAGTASKL+L   S KSIS++WE+   V
Sbjct: 1   MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV 60

Query: 61  RLTSRPFWGIVSSSSRNMVLLAGYWVGPDVDDGWGYIEAFIDRIT 106
           RLTSRPFWGIVSSSSRNMVLL GYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]

BLAST of ClCG02G015580 vs. TrEMBL
Match: A0A0D2R1R0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G298400 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-10
Identity = 51/118 (43.22%), Postives = 69/118 (58.47%), Query Frame = 1


Query: 1   MASFVSLSFSVPQ----SIIKEIPPRKLAKVTVVSCR------AGTASKLMLSCCSNKSI 60
           MA FVSLSFS+P     + +K   P+K A     SCR        TAS  ++ CCSNK+I
Sbjct: 1   MACFVSLSFSIPPCSLPNPLKVRYPKKSA-----SCRLPGLGITKTASYFLVLCCSNKTI 60

Query: 61  -SLSWESCHPVRLTSRPFWGIVS----SSSRNMVLLAGYWVGPDVDDGWGYIEAFIDR 104
            S++ E  H +   S+PF  +VS    +SS   +++ GYWVGPD DD WG++EA I R
Sbjct: 61  YSVNGE--HYLTTMSKPFDELVSCNLNASSSTRIVIMGYWVGPDDDDDWGFVEASICR 111

[Close]

BLAST of ClCG02G015580 vs. TrEMBL
Match: A0A067EQY6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033678mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-10
Identity = 47/118 (39.83%), Postives = 62/118 (52.54%), Query Frame = 1


Query: 1   MASFVSLSFSVPQSIIKEIPPRKLAKVTVVSCRAGTASKLMLS---------CCSNKSIS 60
           MA  VS+SFS P       PP    K+       G  +K  +S         C SN+ + 
Sbjct: 1   MAYLVSISFSTPLCA----PPTSFKKMCWGKEPLGALAKTAISVSGTNHLFPCSSNRGLF 60

Query: 61  LSWESCHP-VRLTSRPFWGIVSS---SSRNMVLLAGYWVGPDVDDGWGYIEAFIDRIT 106
               SCH  +  +S+P  GIVS    SS     +AGYWVGPD+DDGWGY+EAF+++IT
Sbjct: 61  SVNLSCHRHLTSSSKPLDGIVSFLDVSSCTHTTIAGYWVGPDIDDGWGYVEAFVNQIT 114

[Close]

BLAST of ClCG02G015580 vs. TrEMBL
Match: A0A0B0NFN1_GOSAR (Formamidopyrimidine-DNA glycosylase OS=Gossypium arboreum GN=F383_11485 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-09
Identity = 42/111 (37.84%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 1   MASFVSLSFSVPQ----SIIKEIPPRKLAKVTVVSCRAGTASKLMLSCCSNKSISLSWES 60
           MA FVSLSFS+P     + +K   P+K A   +        +   L+ CS+ +   S   
Sbjct: 1   MACFVSLSFSIPPCSLPNPLKVRYPKKSASCRLPGLGITKTASYFLALCSSNTTIYSVNG 60

Query: 61  CHPVRLTSRPFWGIVS----SSSRNMVLLAGYWVGPDVDDGWGYIEAFIDR 104
            H +   S+PF  +VS    +SS   +++ GYWVGPD DDGWG++EA I R
Sbjct: 61  EHYLTTMSKPFDELVSCNLNASSSTRIVIMGYWVGPDDDDGWGFVEASICR 111

[Close]

BLAST of ClCG02G015580 vs. TrEMBL
Match: U5GA52_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s02760g PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-09
Identity = 49/117 (41.88%), Postives = 70/117 (59.83%), Query Frame = 1


Query: 1   MASF-VSLSFSVPQSI----IKEIPPRKLAKVTVVSCRA--GTASKLMLSCCSNKSISLS 60
           MAS  VS+SF +P S      KE+  RK A VT +S +A  GTA+ L++ C +   I   
Sbjct: 1   MASLLVSISFPMPLSAPKFSFKELQLRKSA-VTRLSGQATSGTATNLLVPCNATGEILSV 60

Query: 61  WESCHPVRLT-SRPFWGIVSS----SSRNMVLLAGYWVGPDVDDGWGYIEAFIDRIT 106
            +SC     T +  F+ +VSS    SS    ++ GYWVGPD+DDGWG++E F+++IT
Sbjct: 61  NQSCGGCLATPTNHFYRLVSSCMHVSSCTHKIITGYWVGPDIDDGWGFVEGFVNQIT 116

[Close]

BLAST of ClCG02G015580 vs. NCBI nr
Match: gi|659070288|ref|XP_008454360.1| (PREDICTED: uncharacterized protein LOC103494780 [Cucumis melo])

HSP 1 Score: 174.9 bits (442), Expect = 7.6e-41
Identity = 87/105 (82.86%), Postives = 92/105 (87.62%), Query Frame = 1


Query: 1   MASFVSLSFSVPQSIIKEIPPRKLAKVTVVSCRAGTASKLMLSCCSNKSISLSWESCHPV 60
           MASFVSLSFSVPQ  +KEIPP KLAK TVVS RAGTA KL+L C S KSIS++WE+   V
Sbjct: 1   MASFVSLSFSVPQLTLKEIPPWKLAKATVVSRRAGTALKLVLPCYSKKSISMNWENFRSV 60

Query: 61  RLTSRPFWGIVSSSSRNMVLLAGYWVGPDVDDGWGYIEAFIDRIT 106
           RLTSRPFWGIVSSSSRNMVLL GYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]

BLAST of ClCG02G015580 vs. NCBI nr
Match: gi|700205823|gb|KGN60942.1| (hypothetical protein Csa_2G030030 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 7.6e-41
Identity = 87/105 (82.86%), Postives = 93/105 (88.57%), Query Frame = 1


Query: 1   MASFVSLSFSVPQSIIKEIPPRKLAKVTVVSCRAGTASKLMLSCCSNKSISLSWESCHPV 60
           MASFVSLSFSVPQ  +KEIPPRKLAK T+VS RAGTASKL+L   S KSIS++WE+   V
Sbjct: 1   MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV 60

Query: 61  RLTSRPFWGIVSSSSRNMVLLAGYWVGPDVDDGWGYIEAFIDRIT 106
           RLTSRPFWGIVSSSSRNMVLL GYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]

BLAST of ClCG02G015580 vs. NCBI nr
Match: gi|645222025|ref|XP_008246398.1| (PREDICTED: uncharacterized protein LOC103344577 [Prunus mume])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 1


Query: 1   MASFVSLSFSVPQS----IIKEIPPRKLAKVTVVSCRAG-TASKLMLSCCSNKSISLSWE 60
           MA  +S++ SVP S      KE  PRK   V + S     TA+K   SC +N  IS    
Sbjct: 1   MACLLSMTLSVPLSASHWFTKETAPRKSVFVGLSSQPTSETAAKPSASCRTNTGISSLNR 60

Query: 61  SCHPVRLT-SRP----FWGIVSSSSRNMVLLAGYWVGPDVDDGWGYIEAFIDRIT 106
           SC    LT S+P     +  ++  S + ++++GYWVGPDVDDGWGY+EAF++ IT
Sbjct: 61  SCQDHLLTTSKPHFERMYCYINVDSCSYMIISGYWVGPDVDDGWGYVEAFVNPIT 115

[Close]

BLAST of ClCG02G015580 vs. NCBI nr
Match: gi|470133104|ref|XP_004302414.1| (PREDICTED: uncharacterized protein LOC101291637 [Fragaria vesca subsp. vesca])

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-10
Identity = 48/115 (41.74%), Postives = 69/115 (60.00%), Query Frame = 1


Query: 1   MASFVSLSFSVPQS----IIKEIPPRKLAKVTVVSCR-AGTASKLMLSCCSNKSISLSWE 60
           MA  VS++FS+P S       E+  RK     V S R +GTA+K   SC +N +IS S  
Sbjct: 1   MACLVSMAFSMPLSASHTFTNEVALRKSGLDRVSSRRISGTAAKHSASCNTNGAISSSNR 60

Query: 61  SC-HPVRLTSRPFWGIVSS----SSRNMVLLAGYWVGPDVDDGWGYIEAFIDRIT 106
           SC H +  T++P   I+ S     S + +++ GYW GPD+DDG GY+EAF+++IT
Sbjct: 61  SCRHLLSTTAKPLCEILYSHMNVDSCSHMIIHGYWEGPDIDDGCGYVEAFVNQIT 115

[Close]

BLAST of ClCG02G015580 vs. NCBI nr
Match: gi|823197006|ref|XP_012434140.1| (PREDICTED: uncharacterized protein LOC105761034 [Gossypium raimondii])

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-10
Identity = 51/118 (43.22%), Postives = 69/118 (58.47%), Query Frame = 1


Query: 1   MASFVSLSFSVPQ----SIIKEIPPRKLAKVTVVSCR------AGTASKLMLSCCSNKSI 60
           MA FVSLSFS+P     + +K   P+K A     SCR        TAS  ++ CCSNK+I
Sbjct: 1   MACFVSLSFSIPPCSLPNPLKVRYPKKSA-----SCRLPGLGITKTASYFLVLCCSNKTI 60

Query: 61  -SLSWESCHPVRLTSRPFWGIVS----SSSRNMVLLAGYWVGPDVDDGWGYIEAFIDR 104
            S++ E  H +   S+PF  +VS    +SS   +++ GYWVGPD DD WG++EA I R
Sbjct: 61  YSVNGE--HYLTTMSKPFDELVSCNLNASSSTRIVIMGYWVGPDDDDDWGFVEASICR 111

The following BLAST results are available for this feature:

BLAST of ClCG02G015580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJQ7_CUCSA	5.3e-41	82.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030030 PE=4 SV=1	[more]
A0A0D2R1R0_GOSRA	2.2e-10	43.22	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G298400 PE=4 SV=1	[more]
A0A067EQY6_CITSI	3.7e-10	39.83	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033678mg PE=4 SV=1	[more]
A0A0B0NFN1_GOSAR	1.8e-09	37.84	Formamidopyrimidine-DNA glycosylase OS=Gossypium arboreum GN=F383_11485 PE=4 SV=...	[more]
U5GA52_POPTR	3.1e-09	41.88	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s02760g PE=4 SV=1	[more]

BLAST of ClCG02G015580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070288\|ref\|XP_008454360.1\|	7.6e-41	82.86	PREDICTED: uncharacterized protein LOC103494780 [Cucumis melo]	[more]
gi\|700205823\|gb\|KGN60942.1\|	7.6e-41	82.86	hypothetical protein Csa_2G030030 [Cucumis sativus]	[more]
gi\|645222025\|ref\|XP_008246398.1\|	1.1e-10	41.74	PREDICTED: uncharacterized protein LOC103344577 [Prunus mume]	[more]
gi\|470133104\|ref\|XP_004302414.1\|	1.8e-10	41.74	PREDICTED: uncharacterized protein LOC101291637 [Fragaria vesca subsp. vesca]	[more]
gi\|823197006\|ref\|XP_012434140.1\|	3.1e-10	43.22	PREDICTED: uncharacterized protein LOC105761034 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G015580.1	ClCG02G015580.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G015580	Csa2G030030	Cucumber (Chinese Long) v2	cuwcgB122
ClCG02G015580	MELO3C004233	Melon (DHL92) v3.5.1	mewcgB375
ClCG02G015580	Cla97C02G041310	Watermelon (97103) v2	wcgwmbB138
ClCG02G015580	Bhi06G001276	Wax gourd	wcgwgoB262
ClCG02G015580	CSPI02G04170	Wild cucumber (PI 183967)	cpiwcgB128
ClCG02G015580	Cucsa.091210	Cucumber (Gy14) v1	cgywcgB103
ClCG02G015580	CmoCh05G011300	Cucurbita moschata (Rifu)	cmowcgB701
ClCG02G015580	Lsi11G005760	Bottle gourd (USVL1VR-Ls)	lsiwcgB098
ClCG02G015580	Cp4.1LG11g09100	Cucurbita pepo (Zucchini)	cpewcgB105
ClCG02G015580	Carg26760	Silver-seed gourd	carwcgB0719
ClCG02G015580	CsaV3_2G006510	Cucumber (Chinese Long) v3	cucwcgB137

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G015580	Silver-seed gourd	carwcgB0692
ClCG02G015580	Cucurbita maxima (Rimu)	cmawcgB156
ClCG02G015580	Cucurbita maxima (Rimu)	cmawcgB695
ClCG02G015580	Cucurbita maxima (Rimu)	cmawcgB696
ClCG02G015580	Cucurbita moschata (Rifu)	cmowcgB144
ClCG02G015580	Cucurbita moschata (Rifu)	cmowcgB700
ClCG02G015580	Watermelon (97103) v1	wcgwmB197
ClCG02G015580	Cucurbita pepo (Zucchini)	cpewcgB104
ClCG02G015580	Cucurbita pepo (Zucchini)	cpewcgB733
ClCG02G015580	Cucumber (Gy14) v2	cgybwcgB119
ClCG02G015580	Melon (DHL92) v3.6.1	medwcgB369