Carg26760 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26760
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	UDP-N-acetylmuramoylalanine--D-glutamate ligase
Location	Cucurbita_argyrosperma_scaffold_281 : 80786 .. 81299 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCAGGAAATGCCACCATGGAAACTGGCTAAAGTCACAGTAGTTCCAAGGCGAGCTGGAACAGGTTTGATTCTCATTTTTTCTATGATCAATAATTAGTGGAAATCACAACCATTTTGAGTCATTTTAACTTAAAATTTCTTTAGTTATATCTTTTGTTCATCTTGCTCCACTGTAAAATTGATCAAAACTAGAAAAGGTAATGATTGAGAATTGTACTACTAATGTAATATAGTCTTGTACCCATTTATTATATCATTACTAGATTGAAAAAATTTTGGATTGCTGATGATGCATTGCACTTGCAGCTTCGAAGCTTGTGCTATCCTGTTGCTCAAATAAATCCATATCTAATTGGGAAAACTGCCATCCTGTACGGTTAACTTCAAGACCATTTTGGGGATTAGTTTCTTCTAGTTCCAGGAATTTGGTATTAGCTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTGTCGATCGGATTACTTAA

mRNA sequence

ATGCGTCAGGAAATGCCACCATGGAAACTGGCTAAAGTCACAGTAGTTCCAAGGCGAGCTGGAACAGCTTCGAAGCTTGTGCTATCCTGTTGCTCAAATAAATCCATATCTAATTGGGAAAACTGCCATCCTGTACGGTTAACTTCAAGACCATTTTGGGGATTAGTTTCTTCTAGTTCCAGGAATTTGGTATTAGCTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTGTCGATCGGATTACTTAA

Coding sequence (CDS)

ATGCGTCAGGAAATGCCACCATGGAAACTGGCTAAAGTCACAGTAGTTCCAAGGCGAGCTGGAACAGCTTCGAAGCTTGTGCTATCCTGTTGCTCAAATAAATCCATATCTAATTGGGAAAACTGCCATCCTGTACGGTTAACTTCAAGACCATTTTGGGGATTAGTTTCTTCTAGTTCCAGGAATTTGGTATTAGCTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTGTCGATCGGATTACTTAA

Protein sequence

MRQEMPPWKLAKVTVVPRRAGTASKLVLSCCSNKSISNWENCHPVRLTSRPFWGLVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT

Homology

[Close]

BLAST of Carg26760 vs. NCBI nr
Match: XP_022946526.1 (uncharacterized protein LOC111450562 [Cucurbita moschata])

HSP 1 Score: 185.3 bits (469), Expect = 9.2e-44
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 3   QEMPPWKLAKVTVVPRRAGTASKLVLSCCSNKSISNWENCHPVRLTSRPFWGLVSSSSRN 62
           +EMPPWKLAKVTVVPRRAGTASK VLSCC+NKSISNWENCHPVRLTSRPFWG+VSSSSRN
Sbjct: 17  KEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVRLTSRPFWGIVSSSSRN 76

Query: 63  LVLAGYWVGPDVDDGWGYIEAFVDRIT 90
           LVLAGYWVGPDVDDGWGYIEAFVDRIT
Sbjct: 77  LVLAGYWVGPDVDDGWGYIEAFVDRIT 103

[Close]

BLAST of Carg26760 vs. NCBI nr
Match: XP_023545344.1 (uncharacterized protein LOC111804783 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.5 bits (454), Expect = 5.1e-42
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 3   QEMPPWKLAKVTVVPRRAGTASKLVLSCCSNKSIS-NWENCHPVRLTSRPFWGLVSSSSR 62
           +EMPPWKLAKVTVVPRRAGTAS  VLSCCSNKSIS NWENCHPVRLTSRPFWG+VSSSSR
Sbjct: 17  KEMPPWKLAKVTVVPRRAGTASTFVLSCCSNKSISMNWENCHPVRLTSRPFWGIVSSSSR 76

Query: 63  NLVLAGYWVGPDVDDGWGYIEAFVDRIT 90
           NLVLAGYWVGPDVDDGWGYIEAFVDRIT
Sbjct: 77  NLVLAGYWVGPDVDDGWGYIEAFVDRIT 104

[Close]

BLAST of Carg26760 vs. NCBI nr
Match: XP_022999037.1 (uncharacterized protein LOC111493548 [Cucurbita maxima])

HSP 1 Score: 175.3 bits (443), Expect = 9.6e-41
Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 3   QEMPPWKLAKVTVVPRRAGTASKLVLSCCSNKSIS-NWENCHPVRLTSRPFWGLVSSSSR 62
           +EMPPWKLAKVTVVPRRAGTASK VLSCCSNKSIS NWENC PVRLTSRPFWG+VSSSSR
Sbjct: 17  KEMPPWKLAKVTVVPRRAGTASKPVLSCCSNKSISMNWENCQPVRLTSRPFWGIVSSSSR 76

Query: 63  NLVLAGYWVGPDVDDGWGYIEAFVDRIT 90
           NLVLAGYWVGPDVDDGWGYIEA VDRIT
Sbjct: 77  NLVLAGYWVGPDVDDGWGYIEALVDRIT 104

[Close]

BLAST of Carg26760 vs. NCBI nr
Match: KGN60942.1 (hypothetical protein Csa_2G030030 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 3.4e-30
Identity = 70/89 (78.65%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 3   QEMPPWKLAKVTVVPRRAGTASKLVLSCCSNKSIS-NWENCHPVRLTSRPFWGLVSSSSR 62
           +E+PP KLAK T+V RRAGTASKLVL   S KSIS NWEN   VRLTSRPFWG+VSSSSR
Sbjct: 17  KEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSVRLTSRPFWGIVSSSSR 76

Query: 63  NLV-LAGYWVGPDVDDGWGYIEAFVDRIT 90
           N+V L GYWVGPDVDDGWGYIEAF+DRIT
Sbjct: 77  NMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]

BLAST of Carg26760 vs. NCBI nr
Match: XP_022150791.1 (uncharacterized protein LOC111018854 [Momordica charantia])

HSP 1 Score: 136.3 bits (342), Expect = 4.9e-29
Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 1   MRQEMPPWKLAKVTVVPRR-AGTASKLVLSCCSNKSIS-NWENCHPVRLTSRPFWGLVSS 60
           M +EM P KL KV V  R   GTASKLVLSCCSNKS+S  W + HP+R+TSRPFWG+VS 
Sbjct: 15  MLKEMQPRKLDKVAVSSRAITGTASKLVLSCCSNKSLSMKWRSSHPLRVTSRPFWGVVSF 74

Query: 61  SSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT 90
           SSRN V+ GYW+GPDVDDGWGYIEAF+DRIT
Sbjct: 75  SSRNRVIVGYWIGPDVDDGWGYIEAFIDRIT 105

[Close]

BLAST of Carg26760 vs. TrEMBL
Match: tr|A0A0A0LJQ7|A0A0A0LJQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G030030 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.3e-30
Identity = 70/89 (78.65%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 3   QEMPPWKLAKVTVVPRRAGTASKLVLSCCSNKSIS-NWENCHPVRLTSRPFWGLVSSSSR 62
           +E+PP KLAK T+V RRAGTASKLVL   S KSIS NWEN   VRLTSRPFWG+VSSSSR
Sbjct: 17  KEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSVRLTSRPFWGIVSSSSR 76

Query: 63  NLV-LAGYWVGPDVDDGWGYIEAFVDRIT 90
           N+V L GYWVGPDVDDGWGYIEAF+DRIT
Sbjct: 77  NMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]

BLAST of Carg26760 vs. TrEMBL
Match: tr|A0A2P6R705|A0A2P6R705_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0455231 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-09
Identity = 40/94 (42.55%), Postives = 62/94 (65.96%), Query Frame = 0


Query: 4   EMPPWKLAKVTVVPRR-AGTASKLVLSCCSNKSISNW-ENC-HPVRLTSRPFWGLV---- 63
           E+P  K A V V  RR +G+ASK   SC +N ++S+  ++C H +  TS+P   ++    
Sbjct: 22  EVPLAKSALVRVSSRRVSGSASKPSASCNTNGAVSSLNQSCQHLLTTTSKPLLEILYCHR 81

Query: 64  -SSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT 90
              S  ++++ GYWVGPD+DDG+GY+EAFV++IT
Sbjct: 82  SIESCSHMIIFGYWVGPDIDDGYGYVEAFVNQIT 115

[Close]

BLAST of Carg26760 vs. TrEMBL
Match: tr|A0A0D2R1R0|A0A0D2R1R0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G298400 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.3e-09
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 22  TASKLVLSCCSNKSISNWENCHPVRLTSRPFWGLVS-----SSSRNLVLAGYWVGPDVDD 81
           TAS  ++ CCSNK+I +    H +   S+PF  LVS     SSS  +V+ GYWVGPD DD
Sbjct: 41  TASYFLVLCCSNKTIYSVNGEHYLTTMSKPFDELVSCNLNASSSTRIVIMGYWVGPDDDD 100

Query: 82  GWGYIEAFVDR 88
            WG++EA + R
Sbjct: 101 DWGFVEASICR 111

[Close]

BLAST of Carg26760 vs. TrEMBL
Match: tr|A0A2P4IT24|A0A2P4IT24_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_37483 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 20  AGTASKLVLSCCSNKSI--SNWENCHPVRLTSRPFWGLVSS----SSRNLVLAGYWVGPD 79
           A TA KL+  C +NK I   NW + H + +T   F    SS    S  + ++AGYWVGPD
Sbjct: 39  AKTAPKLLTICNANKGILSVNWSHRHHL-ITPSIFPSETSSCPLNSCTHTIIAGYWVGPD 98

Query: 80  VDDGWGYIEAFVDRIT 90
           +DDGWG++EAFV++IT
Sbjct: 99  LDDGWGFVEAFVNQIT 113

[Close]

BLAST of Carg26760 vs. TrEMBL
Match: tr|A0A1U8LGW2|A0A1U8LGW2_GOSHI (uncharacterized protein LOC107927310 OS=Gossypium hirsutum OX=3635 GN=LOC107927310 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 22  TASKLVLSCCSNKSISNWENCHPVRLTSRPFWGLVS----SSSRNLVLAGYWVGPDVDDG 81
           TAS  ++ CCSNK+I +    H +   S+PF  LVS    +SS  +V+ GYWVGPD DD 
Sbjct: 41  TASYFLVLCCSNKTIYSVNGEHYLTTMSKPFDELVSCNLNASSTRIVIMGYWVGPDDDDD 100

Query: 82  WGYIEAFVDR 88
           WG++EA + R
Sbjct: 101 WGFVEASICR 110

The following BLAST results are available for this feature:

BLAST of Carg26760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946526.1	9.2e-44	95.40	uncharacterized protein LOC111450562 [Cucurbita moschata]	[more]
XP_023545344.1	5.1e-42	94.32	uncharacterized protein LOC111804783 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022999037.1	9.6e-41	93.18	uncharacterized protein LOC111493548 [Cucurbita maxima]	[more]
KGN60942.1	3.4e-30	78.65	hypothetical protein Csa_2G030030 [Cucumis sativus]	[more]
XP_022150791.1	4.9e-29	71.43	uncharacterized protein LOC111018854 [Momordica charantia]	[more]

BLAST of Carg26760 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg26760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26760 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJQ7\|A0A0A0LJQ7_CUCSA	2.3e-30	78.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G030030 PE=4 SV=1	[more]
tr\|A0A2P6R705\|A0A2P6R705_ROSCH	2.2e-09	42.55	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0455231 PE=4...	[more]
tr\|A0A0D2R1R0\|A0A0D2R1R0_GOSRA	8.3e-09	47.89	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G298400 PE=4 ...	[more]
tr\|A0A2P4IT24\|A0A2P4IT24_QUESU	1.4e-08	47.37	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_37483 PE=4 SV=1	[more]
tr\|A0A1U8LGW2\|A0A1U8LGW2_GOSHI	1.4e-08	47.14	uncharacterized protein LOC107927310 OS=Gossypium hirsutum OX=3635 GN=LOC1079273...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26760-RA	Carg26760-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26760	Csa2G030030	Cucumber (Chinese Long) v2	carcuB0758
Carg26760	MELO3C004233	Melon (DHL92) v3.5.1	carmeB0737
Carg26760	ClCG02G015580	Watermelon (Charleston Gray)	carwcgB0719
Carg26760	CSPI02G04170	Wild cucumber (PI 183967)	carcpiB0775
Carg26760	Cucsa.091210	Cucumber (Gy14) v1	carcgyB0834
Carg26760	CmoCh05G011300	Cucurbita moschata (Rifu)	carcmoB1009
Carg26760	Lsi11G005760	Bottle gourd (USVL1VR-Ls)	carlsiB679
Carg26760	Cp4.1LG11g09100	Cucurbita pepo (Zucchini)	carcpeB1044
Carg26760	CsaV3_2G006510	Cucumber (Chinese Long) v3	carcucB0778
Carg26760	Cla97C02G041310	Watermelon (97103) v2	carwmbB0777
Carg26760	Bhi06G001276	Wax gourd	carwgoB0877

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26760	Melon (DHL92) v3.6.1	carmedB0750
Carg26760	Watermelon (97103) v1	carwmB0739
Carg26760	Cucumber (Gy14) v2	carcgybB0737
Carg26760	Cucurbita maxima (Rimu)	carcmaB1038