ClCG02G013520 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G013520
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	60S ribosomal protein L35, putative
Location	CG_Chr02 : 27481514 .. 27483124 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAAATTACGGGCGTCTTAAATAGGTTTGGATCTTCTTCAGTTTCTACAACCTAGGGTTTTGCTAGTTGCAGACCTCCGCCGAATCCCAAATCACAACAGCCGGTCTCTGCTTACCAGATTTTAATGGGTAAAATCTCACGAACTTCGCTTAACTGAAGCTTTCTCTTCATAATTTCTCCGTCGTTGAGCAACATTGATCGCTTCATGATTGATTTTGTCTTAGTTTTCTTTCTCTCTTCTGCTTTAAAATTTATATGGTCGGTTTTCTTGATTGAGTGCAGCGAGAATTAAGGTTCATGAGCTTAGACAGAAGTCGAAGGGGGATCTTTTGACCCAGCTTAAGGACCTTAAGGCGGAGCTTGCTCTTCTCCGTGTCGCTAAGGTCACTGGTGGTGCTCCTAACAAGCTCTCCAAAATGTACATTCGTTTATCTTTCTATTGATTCTCTTCTTCTTTGTATGTTTTCGTATGTATGTTGATTGTTGTTCTTTTGGGTTTTTGCTGTGATGTTTATTGGGTTTGTTTTGGTGGTTCTTCACTGCAGTAAGGTAGTGAGGTTGTCAATCGCTCAGGTGTTGACAGTGATTTCTCAGAAACAGAAATCTGCTCTTAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTTGATTTGCGCCCCAAGAAGACCAGGGCCATTCGTAGAAGGCTCACCAAACACCAAGTAAGAGCTTTCTTCATTTGAAATTGCATATTAGTATATATTCCTTTCCCTTTTGTTGTATTTGTCTGTTTGCTTAAATTTCTGCTATGTATTTGATTCATTATCAATGTATTTGTGCACGTTTCTGAATAATCTATGAATTTGCTTTCCCCGTTGAATGGTTAAGGATTCTACTGTGTGGTATAATTTTATTGTTAATATTGTATTTCCCGTTGAAGCTTCGTGTAGTATTTGGTCATTTTCGCCATTTATTGGGCTCTTCGTTTCCTGAGATTGTTGAGCCACTGCATTTTAGAAGTTAAAGGAGACTTCTTTTTATTAGAAAGAAAAAACAGTATCAAACGGAATGATTCTCCAAGTATTGGAAGCCTTCTACATAGTTTCAATGTCTTAATGCTGTGAACAAAATTCTGTTTCATGCCTTATCTAGAATGTGCATATAACATATCTGAGATATCTCTTTATGGTAATGAATATTTGGGTTGATTGGAATCCTGTATTTGTTGTATTGAAATACTGCAAGAAGTGTAGGTCGGCATTTTTCCTTTTTGTGATTCGGCATTCATGTATTGTGTATTACAGGCATCACTAAAGACGGAGCGACAGAAGAAGAAAGAGATGTACTACCCATTGAGGAAATATGCCATCAAGGTGTAGGCTTTAGAGGGAATTGATTTATCGTCCGTGGTATCATGCATCTTTTACTCATTTTGGCTTTTGATTTATCTATAACTTTATTCAGACTTGAGTGCCTATTTTCAATCTTATTGTTAGATCTCTGAACTTTGAAGTCTTTCATTTTCCATGTAATACTTTAGTTTTCCAAGTTATAATGAAATGGTTTTGGTTAATGACCTTAGGCAGTGCAATCTTTTGCCAAGATGAATGTGCTCTGATCTTAAAC

mRNA sequence

ATGAAGGAAATTACGGGCGTCTTAAATAGACCTCCGCCGAATCCCAAATCACAACAGCCGGTCTCTGCTTACCAGATTTTAATGGCGAGAATTAAGGTTCATGAGCTTAGACAGAAGTCGAAGGGGGATCTTTTGACCCAGCTTAAGGACCTTAAGGCGGAGCTTGCTCTTCTCCGTGTCGCTAAGGTCACTGGTGGTGCTCCTAACAAGCTCTCCAAAATTAAGGTAGTGAGGTTGTCAATCGCTCAGGTGTTGACAGTGATTTCTCAGAAACAGAAATCTGCTCTTAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTTGATTTGCGCCCCAAGAAGACCAGGGCCATTCGTAGAAGGCTCACCAAACACCAAGCATCACTAAAGACGGAGCGACAGAAGAAGAAAGAGATGTACTACCCATTGAGGAAATATGCCATCAAGGTGTAGGCTTTAGAGGGAATTGATTTATCGTCCGTGGTATCATGCATCTTTTACTCATTTTGGCTTTTGATTTATCTATAACTTTATTCAGACTTGAGTGCCTATTTTCAATCTTATTGTTAGATCTCTGAACTTTGAAGTCTTTCATTTTCCATGTAATACTTTAGTTTTCCAAGTTATAATGAAATGGTTTTGGTTAATGACCTTAGGCAGTGCAATCTTTTGCCAAGATGAATGTGCTCTGATCTTAAAC

Coding sequence (CDS)

ATGAAGGAAATTACGGGCGTCTTAAATAGACCTCCGCCGAATCCCAAATCACAACAGCCGGTCTCTGCTTACCAGATTTTAATGGCGAGAATTAAGGTTCATGAGCTTAGACAGAAGTCGAAGGGGGATCTTTTGACCCAGCTTAAGGACCTTAAGGCGGAGCTTGCTCTTCTCCGTGTCGCTAAGGTCACTGGTGGTGCTCCTAACAAGCTCTCCAAAATTAAGGTAGTGAGGTTGTCAATCGCTCAGGTGTTGACAGTGATTTCTCAGAAACAGAAATCTGCTCTTAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTTGATTTGCGCCCCAAGAAGACCAGGGCCATTCGTAGAAGGCTCACCAAACACCAAGCATCACTAAAGACGGAGCGACAGAAGAAGAAAGAGATGTACTACCCATTGAGGAAATATGCCATCAAGGTGTAG

Protein sequence

MKEITGVLNRPPPNPKSQQPVSAYQILMARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYAIKV

Homology

[Close]

BLAST of ClCG02G013520 vs. Swiss-Prot
Match: RL35_EUPES (60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.5e-55
Identity = 112/123 (91.06%), Postives = 115/123 (93.50%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELRQK+K +LL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
           ISQKQK ALREAYK KK LPLDLRPKKTRAIRRRLTKHQ SLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of ClCG02G013520 vs. Swiss-Prot
Match: RL352_ARATH (60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.0e-54
Identity = 112/123 (91.06%), Postives = 115/123 (93.50%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELR+KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
           ISQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of ClCG02G013520 vs. Swiss-Prot
Match: RL351_ARATH (60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.0e-54
Identity = 112/123 (91.06%), Postives = 115/123 (93.50%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELR+KSK DL  QLK+LKAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
            SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of ClCG02G013520 vs. Swiss-Prot
Match: RL354_ARATH (60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.2e-54
Identity = 112/123 (91.06%), Postives = 114/123 (92.68%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELR KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
           ISQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of ClCG02G013520 vs. Swiss-Prot
Match: RL353_ARATH (60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.0e-54
Identity = 111/123 (90.24%), Postives = 114/123 (92.68%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELR KSK DL TQLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
            SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of ClCG02G013520 vs. TrEMBL
Match: A0A0A0KLK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G178720 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.5e-57
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELRQKSKGDLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
           ISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of ClCG02G013520 vs. TrEMBL
Match: A0A0A0KQT2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505200 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.4e-56
Identity = 118/123 (95.93%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELRQKSK DLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLLQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
           ISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of ClCG02G013520 vs. TrEMBL
Match: A0A0D2VIS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G245300 PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-55
Identity = 117/123 (95.12%), Postives = 120/123 (97.56%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELRQKSK DLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKTDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
           ISQKQKSALREAYKKKK LPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKKKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPMRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of ClCG02G013520 vs. TrEMBL
Match: A0A0D2TYC8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G316700 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.2e-54
Identity = 115/123 (93.50%), Postives = 120/123 (97.56%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELRQKSK +LL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKTELLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
           ISQKQK+ALREAYKKKK LPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKAALREAYKKKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPMRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of ClCG02G013520 vs. TrEMBL
Match: A0A0B0PBR2_GOSAR (60S ribosomal L35 OS=Gossypium arboreum GN=F383_27497 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.0e-54
Identity = 115/123 (93.50%), Postives = 119/123 (96.75%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELRQKSK +LL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKTELLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
           ISQKQKSALREAYK KK LPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPMRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of ClCG02G013520 vs. TAIR10
Match: AT2G39390.1 (AT2G39390.1 Ribosomal L29 family protein )

HSP 1 Score: 214.2 bits (544), Expect = 5.7e-56
Identity = 112/123 (91.06%), Postives = 115/123 (93.50%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELR+KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
           ISQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of ClCG02G013520 vs. TAIR10
Match: AT3G09500.1 (AT3G09500.1 Ribosomal L29 family protein )

HSP 1 Score: 214.2 bits (544), Expect = 5.7e-56
Identity = 112/123 (91.06%), Postives = 115/123 (93.50%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELR+KSK DL  QLK+LKAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
            SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of ClCG02G013520 vs. TAIR10
Match: AT3G55170.1 (AT3G55170.1 Ribosomal L29 family protein )

HSP 1 Score: 211.8 bits (538), Expect = 2.8e-55
Identity = 111/123 (90.24%), Postives = 114/123 (92.68%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELR KSK DL TQLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
            SQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of ClCG02G013520 vs. TAIR10
Match: AT5G02610.2 (AT5G02610.2 Ribosomal L29 family protein )

HSP 1 Score: 199.9 bits (507), Expect = 1.1e-51
Identity = 112/146 (76.71%), Postives = 114/146 (78.08%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKI------------- 87
           MARIKVHELR KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKI             
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIRMDVDLAYDSNMY 60

Query: 88  ----------KVVRLSIAQVLTVISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTK 147
                     KVVR SIAQVLTVISQKQKSALREAYK KKLLPLDLRPKKTRAIRRRLTK
Sbjct: 61  LRSIKFGPCIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTK 120

Query: 148 HQASLKTERQKKKEMYYPLRKYAIKV 151
           HQASLKTER+KKKEMY+P+RKYAIKV
Sbjct: 121 HQASLKTEREKKKEMYFPVRKYAIKV 146

[Close]

BLAST of ClCG02G013520 vs. NCBI nr
Match: gi|449466494|ref|XP_004150961.1| (PREDICTED: 60S ribosomal protein L35 [Cucumis sativus])

HSP 1 Score: 230.3 bits (586), Expect = 2.2e-57
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELRQKSKGDLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
           ISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of ClCG02G013520 vs. NCBI nr
Match: gi|659123350|ref|XP_008461617.1| (PREDICTED: 60S ribosomal protein L35-like [Cucumis melo])

HSP 1 Score: 228.4 bits (581), Expect = 8.2e-57
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELRQKSKGDLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
           ISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ SLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of ClCG02G013520 vs. NCBI nr
Match: gi|449464196|ref|XP_004149815.1| (PREDICTED: 60S ribosomal protein L35 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 9.1e-56
Identity = 118/123 (95.93%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELRQKSK DLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLLQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
           ISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of ClCG02G013520 vs. NCBI nr
Match: gi|659127102|ref|XP_008463526.1| (PREDICTED: 60S ribosomal protein L35 [Cucumis melo])

HSP 1 Score: 223.8 bits (569), Expect = 2.0e-55
Identity = 117/123 (95.12%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELRQKSK DLL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLLQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
           ISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKE+Y+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKELYFPLRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

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BLAST of ClCG02G013520 vs. NCBI nr
Match: gi|823247035|ref|XP_012456191.1| (PREDICTED: 60S ribosomal protein L35-like [Gossypium raimondii])

HSP 1 Score: 223.4 bits (568), Expect = 2.7e-55
Identity = 117/123 (95.12%), Postives = 120/123 (97.56%), Query Frame = 1


Query: 28  MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 87
           MARIKVHELRQKSK DLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKTDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 88  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 147
           ISQKQKSALREAYKKKK LPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKKKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPMRKYA 120

Query: 148 IKV 151
           IKV
Sbjct: 121 IKV 123

The following BLAST results are available for this feature:

BLAST of ClCG02G013520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL35_EUPES	4.5e-55	91.06	60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1	[more]
RL352_ARATH	1.0e-54	91.06	60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1	[more]
RL351_ARATH	1.0e-54	91.06	60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=2 SV=1	[more]
RL354_ARATH	2.2e-54	91.06	60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1	[more]
RL353_ARATH	5.0e-54	90.24	60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=2 SV=1	[more]

BLAST of ClCG02G013520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLK6_CUCSA	1.5e-57	98.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G178720 PE=3 SV=1	[more]
A0A0A0KQT2_CUCSA	6.4e-56	95.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505200 PE=3 SV=1	[more]
A0A0D2VIS1_GOSRA	1.8e-55	95.12	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G245300 PE=3 SV=1	[more]
A0A0D2TYC8_GOSRA	1.2e-54	93.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G316700 PE=3 SV=1	[more]
A0A0B0PBR2_GOSAR	2.0e-54	93.50	60S ribosomal L35 OS=Gossypium arboreum GN=F383_27497 PE=3 SV=1	[more]

BLAST of ClCG02G013520 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39390.1	5.7e-56	91.06	Ribosomal L29 family protein	[more]
AT3G09500.1	5.7e-56	91.06	Ribosomal L29 family protein	[more]
AT3G55170.1	2.8e-55	90.24	Ribosomal L29 family protein	[more]
AT5G02610.2	1.1e-51	76.71	Ribosomal L29 family protein	[more]

BLAST of ClCG02G013520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449466494\|ref\|XP_004150961.1\|	2.2e-57	98.37	PREDICTED: 60S ribosomal protein L35 [Cucumis sativus]	[more]
gi\|659123350\|ref\|XP_008461617.1\|	8.2e-57	97.56	PREDICTED: 60S ribosomal protein L35-like [Cucumis melo]	[more]
gi\|449464196\|ref\|XP_004149815.1\|	9.1e-56	95.93	PREDICTED: 60S ribosomal protein L35 [Cucumis sativus]	[more]
gi\|659127102\|ref\|XP_008463526.1\|	2.0e-55	95.12	PREDICTED: 60S ribosomal protein L35 [Cucumis melo]	[more]
gi\|823247035\|ref\|XP_012456191.1\|	2.7e-55	95.12	PREDICTED: 60S ribosomal protein L35-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001854	Ribosomal_L29/L35

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G013520.1	ClCG02G013520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001854	Ribosomal protein L29	GENE3D	G3DSA:1.10.287.310		coord: 28..98 score: 1.8
IPR001854	Ribosomal protein L29	HAMAP	MF_00374	Ribosomal_L29	coord: 31..91 score: 12
IPR001854	Ribosomal protein L29	PFAM	PF00831	Ribosomal_L29	coord: 35..91 score: 3.3
IPR001854	Ribosomal protein L29	TIGRFAMs	TIGR00012	TIGR00012	coord: 35..91 score: 3.7
IPR001854	Ribosomal protein L29	unknown	SSF46561	Ribosomal protein L29 (L29p)	coord: 31..92 score: 7.72
None	No IPR available	PANTHER	PTHR13872	60S RIBOSOMAL PROTEIN L35	coord: 28..150 score: 7.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G013520	Csa5G178720	Cucumber (Chinese Long) v2	cuwcgB380
ClCG02G013520	MELO3C023820	Melon (DHL92) v3.5.1	mewcgB056
ClCG02G013520	Cla020108	Watermelon (97103) v1	wcgwmB197
ClCG02G013520	Cla97C02G039190	Watermelon (97103) v2	wcgwmbB138
ClCG02G013520	Bhi07G000818	Wax gourd	wcgwgoB319
ClCG02G013520	CSPI05G09220	Wild cucumber (PI 183967)	cpiwcgB398
ClCG02G013520	Cucsa.165680	Cucumber (Gy14) v1	cgywcgB290
ClCG02G013520	CmaCh04G002420	Cucurbita maxima (Rimu)	cmawcgB642
ClCG02G013520	CmoCh04G002490	Cucurbita moschata (Rifu)	cmowcgB644
ClCG02G013520	Lsi04G008480	Bottle gourd (USVL1VR-Ls)	lsiwcgB275
ClCG02G013520	Cp4.1LG01g10480	Cucurbita pepo (Zucchini)	cpewcgB376
ClCG02G013520	Cp4.1LG01g04670	Cucurbita pepo (Zucchini)	cpewcgB377
ClCG02G013520	CsGy5G006580	Cucumber (Gy14) v2	cgybwcgB347
ClCG02G013520	MELO3C023820.2	Melon (DHL92) v3.6.1	medwcgB055
ClCG02G013520	Carg23781	Silver-seed gourd	carwcgB0838
ClCG02G013520	CsaV3_5G006630	Cucumber (Chinese Long) v3	cucwcgB402

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G013520	Cucumber (Chinese Long) v3	cucwcgB307
ClCG02G013520	Watermelon (97103) v2	wcgwmbB158
ClCG02G013520	Wax gourd	wcgwgoB312
ClCG02G013520	Cucurbita maxima (Rimu)	cmawcgB641
ClCG02G013520	Cucurbita moschata (Rifu)	cmowcgB643
ClCG02G013520	Wild cucumber (PI 183967)	cpiwcgB305