ClCG02G009930 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G009930
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionNiemann-Pick C1 protein
LocationCG_Chr02 : 15953651 .. 15957103 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATCTTCCCATACTCTGTCTTCTATATTTTCTTTGAGCAATATCTTGATATATGGAAGACGGCTTTGATGAACATCGCCATAGCTCTTGGTTAGTACTTCAGGAACATTGAAACTAAAACAGTTTTTTATTTTTTTTTTCCTTTATTTTGGGAAAATTACCTTTTTAGTCCCTAAGTTAAGTATTAGGTGCATTTGGTCCTTAAGTTTTAAAAGTAGACTCTTCTAGTCCCTAAGTTTTTAAGAATGAGTTTATATGGCCCCTCACTTCTAACAGAACGGTTAAATATGAACAGAGAGTTGATTGAACTTTTTAATGACATATGTGGTTTGATGATTTTGCTAACTGAATTTTTATTTAAATTAATAATAACAATAACAAGAAAAGTAAACATCACAATTACCCACCCTGATTGGACACAAGTCACACCAAATCGTGGAACCTAGAAAAATCGCAAAATCGCAAATTTCAATGTTCCACCACAATTCTTAGACACCACTGCACAATCCGCAAGGTTCCTCCTCATTCTATAACTTTTGTAAACCTTCAGCACCTTCACCGTTTCTGAATCCAGCTCGCTCATCGGCCTAGGAGTGTACATAATCAACTGGCTTTGGTAAGGGAACTCCCGGAGTCGCGGTCTTTATACTCTCCAATCCGCCATTTTTTCAAACGTAAACAAAGAAATTGAAACCAACATCTTCCCCAAGCGACTTAGATGAGAGGTTTTGTTTCAAAAATCACTCTCTTGTTCGTTCCTTTTTAGGCTGTTGGGTTTGCTTATGATGCTCTGTTTTTTATGGATTCTTGCTGTGTAATTTTGAAGCTAATTGATTTCAAATTCAGAGTTATATCTTTAGCAGAGAAACTGAGATTTTTGCATATGATGAAAAGTCCTTGGTGAGGAGTGAGAGGGATAAACCCATGAATCAAAACCCACAAACTAAATTAACCAAAATAAAAATGGGTTTATGTAATTTGGGGAACTTAAATTGTTGGAAGATGACCAAATTAAGCAAACACCCAAAACACAGTTAATGTCAAACTCTGGAGAAAGGGAAATTATTTCCAACCAAAGAAGAAGGTTTTGAGATTTTGTGTGATTTGCGTGCAAAGAAGAAAGTTTGGCAATTGGCTTTGCGACTTCTCTAGGTTTTGATTTAGGGCTAAATGTTGGGGTTTAAATTTATTTTATTATTAACTTTTAAAAAATCCAGTCAGCAACCAACTTAGCACACTCATCTCGCCACATATGCAACACTAAAAGGTCTAGTCAACAACCCATTAGTATTTAACAGTCCGGTTAGAAATGAGGGACCATTTAAACCCATTCCTAAAAATTTAGGGACTAAAAGGGTCCATTTTAAAAACTCAGAAAGCAAATGCTCTTGTTACTAAAAACTCGGGGACTAAAAAGGTAATTTTTCCATTTTTTAAAAAAATTTAATTTTTTATTTTTGGAAAGTATGCTAGGAGAATTTTTAACCTGATAACTCTAATTACGTTTCAAGGGCATAGCACATAGTTAAATATCTTGTTCATCTTTCTTAAACAAACTATTGTTATATTATTGATAATATAGGTCCCCGTGTTATTTTATTGGCTTTATTAATGTCTTAACCAGATTTCTAAGAATCTCATTGAGGATTTTCTGTGATGCAATTGCAGGTGCCATATTTATTGTCTCTCTGGTTATCACATCTAGGTATGAATATCATTTTGTTTTTGTGTTTGGCTGACATTTATTACAAGGTTCTTTTTGTAGTGTGAAAATGCCACTTCTTTATTTGATTATACTTTGATCTATTGGTTTTGAAATGCAGTTTGTGGAGTTCAGGAATTATTATACTTGTTTTGGCTATGATTGTTATTGATCTCATGGTATCTCTCTCTTGCTACAATGACTCCATTACTTATATTTCCTTTTAGAGGAGTCTATTGCATTTTTATTTTATTCGTTTATTAATTTATGAGTTTCTATTCCCGTTTGTGTATGTTTTGACTTTGTGAAGTCAGTTGTTTTCAGAAGTGTTGATTTCTCTTTTTCGTTTTTGGCAGGGAGTAATGGCAGTTCTGAAAATTCAACTAAATGCAGTCTCTGTTGTTAACATATTAATGTCAATAGGAATTGCTGTTGAGTTTTGCATCCATTTAGTTCATGCATTTTTGGTTAGTACCAACCCTAATCACTTCATCAGGCTATTTAAATTCATGGTTTAATTTACTAATTTCACTTATTCGAAGACATGCAAAGTTTTTGGGGCTTAAGTAATCGTGAACCCATGGTGTGGTTTCTGGTGGTCATGGTGGAGTACTGGCACATGTTTTAATCACCAGACCATTGATTAGCATGCTATTATATGGGAAATGCTATGGAGTCAAATAGCTAGCTTATTACTGGATGACGGACCTTGTGTCTTACCCTTTTATTATTATTATTATTATTATTGACTTTATGATTTAATAACATATTTGACCAAATGCCCTCATGTAGGTTAGCTGCGGTGACAGAAGCCAGCGAGCACAGGAGGCTTTGAGTACAGTGGGAGCCTCTGTATTCAGGTAGACATTGTGTTTGATTTTCTTATTTTGTTGCTACAACATATTCAGTTTTTGGTGCATCTCGGGATCGTATTCAATAAAAGATGGATGGCTTCCATTGTTGGAAGATTTGACTGTAAAAGAAACAATTTCCCGCGATGCTTTCTACTTTATGGAAGTGTTACATTTGACTCAGTTTTTCGTTGTGCATGACTACTCAACATTTTCTAAAAGAGGTGTATTTCTACTTCTCGCTATACTAGTTACTCTTCGAATCAGTTACTTAAAAAAACGATTCTTTCCATTTTAATTTTAAAAAGTAAAGAGGATATTTCTCATAATCATTATGACCTATGAGTTCTCTTTGAAAGTTTGTCAGGTTCCTGTCTTGCGCCCCAGCATCCACATGATGCCATTTTGCAGAAATTAATATTTACACTTTTTTTGCAGTGGGATTACTCTCACGAAACTGGTTGGGGTCATCGTTCTTTGCTTCGCGAAATCAGAAATATTTGTGGTATCTGATTTCTTGGCCTTATTCCTTATTACAAATTCATGTTACTTTCTTTTGAGATCTAAAAGAAGACAAATATTGGCTATGTGGATTCTGCAGGTTTATTACTTCCAAATGTACCTTGCATTGGTCATTATTGGTTTCCTCCATGGCCTCGTTTTTCTACCTGTAAGTTCAGAAACTATCCAATATTCTTATAATTACCGACATCATCCCGTCTTCTATGGAGGAAGTCATTGAGCCATTTATTACATATCTGGTTGTCCTTCGCAGGTAATATTGAGTATGATTGGACCACCATCAAGATACTTAGTTGAAGATGATGCTCCTACGGAAACTGAGCTGCTTGTTTCATAAGCCATATGATGAAAGATGAAGTATGTCGTTACCCTCC

mRNA sequence

ATGGATATCTTCCCATACTCTGTCTTCTATATTTTCTTTGAGCAATATCTTGATATATGGAAGACGGCTTTGATGAACATCGCCATAGCTCTTGGTGCCATATTTATTGTCTCTCTGGTTATCACATCTAGTTTGTGGAGTTCAGGAATTATTATACTTGTTTTGGCTATGATTGTTATTGATCTCATGGGAGTAATGGCAGTTCTGAAAATTCAACTAAATGCAGTCTCTGTTGTTAACATATTAATGTCAATAGGAATTGCTGTTGAGTTTTGCATCCATTTAGTTCATGCATTTTTGGTTAGCTGCGGTGACAGAAGCCAGCGAGCACAGGAGGCTTTGAGTACAGTGGGAGCCTCTGTATTCAGTGGGATTACTCTCACGAAACTGGTTGGGGTCATCGTTCTTTGCTTCGCGAAATCAGAAATATTTGTGGTTTATTACTTCCAAATGTACCTTGCATTGGTCATTATTGGTTTCCTCCATGGCCTCGTTTTTCTACCTGTAATATTGAGTATGATTGGACCACCATCAAGATACTTAGTTGAAGATGATGCTCCTACGGAAACTGAGCTGCTTGTTTCATAAGCCATATGATGAAAGATGAAGTATGTCGTTACCCTCC

Coding sequence (CDS)

ATGGATATCTTCCCATACTCTGTCTTCTATATTTTCTTTGAGCAATATCTTGATATATGGAAGACGGCTTTGATGAACATCGCCATAGCTCTTGGTGCCATATTTATTGTCTCTCTGGTTATCACATCTAGTTTGTGGAGTTCAGGAATTATTATACTTGTTTTGGCTATGATTGTTATTGATCTCATGGGAGTAATGGCAGTTCTGAAAATTCAACTAAATGCAGTCTCTGTTGTTAACATATTAATGTCAATAGGAATTGCTGTTGAGTTTTGCATCCATTTAGTTCATGCATTTTTGGTTAGCTGCGGTGACAGAAGCCAGCGAGCACAGGAGGCTTTGAGTACAGTGGGAGCCTCTGTATTCAGTGGGATTACTCTCACGAAACTGGTTGGGGTCATCGTTCTTTGCTTCGCGAAATCAGAAATATTTGTGGTTTATTACTTCCAAATGTACCTTGCATTGGTCATTATTGGTTTCCTCCATGGCCTCGTTTTTCTACCTGTAATATTGAGTATGATTGGACCACCATCAAGATACTTAGTTGAAGATGATGCTCCTACGGAAACTGAGCTGCTTGTTTCATAA

Protein sequence

MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGIIILVLAMIVIDLMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAFLVSCGDRSQRAQEALSTVGASVFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRYLVEDDAPTETELLVS
Homology
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BLAST of ClCG02G009930 vs. Swiss-Prot
Match: NPC1_HUMAN (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2)

HSP 1 Score: 203.4 bits (516), Expect = 2.3e-51
Identity = 98/176 (55.68%), Postives = 137/176 (77.84%), Query Frame = 1 

Query: 3    IFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITS-SLWSSGIIILVLAMIVID 62
            +FPYSVFY+F+EQYL I    + N+ ++LGAIF+V++V+    LWS+ I+   +AM++++
Sbjct: 1078 VFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVN 1137

Query: 63   LMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAFLVSC-GDRSQRAQEALSTVGAS 122
            + GVM +  I LNAVS+VN++MS GI+VEFC H+  AF VS  G R +RA+EAL+ +G+S
Sbjct: 1138 MFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSS 1197

Query: 123  VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGP 177
            VFSGITLTK  G++VL FAKS+IF ++YF+MYLA+V++G  HGL+FLPV+LS IGP
Sbjct: 1198 VFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGP 1253

[Close]
BLAST of ClCG02G009930 vs. Swiss-Prot
Match: NPC1_MOUSE (Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2)

HSP 1 Score: 203.4 bits (516), Expect = 2.3e-51
Identity = 98/176 (55.68%), Postives = 138/176 (78.41%), Query Frame = 1 

Query: 3    IFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITS-SLWSSGIIILVLAMIVID 62
            +FPYSVFY+F+EQYL I    + N++++LG+IF+V+LV+    LWS+ I+ + +AMI+++
Sbjct: 1077 VFPYSVFYVFYEQYLTIIDDTIFNLSVSLGSIFLVTLVVLGCELWSAVIMCITIAMILVN 1136

Query: 63   LMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAFLVSC-GDRSQRAQEALSTVGAS 122
            + GVM +  I LNAVS+VN++MS GI+VEFC H+  AF +S  G R  RA+EAL+ +G+S
Sbjct: 1137 MFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTMSTKGSRVSRAEEALAHMGSS 1196

Query: 123  VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGP 177
            VFSGITLTK  G++VL FAKS+IF ++YF+MYLA+V++G  HGL+FLPV+LS IGP
Sbjct: 1197 VFSGITLTKFGGIVVLAFAKSQIFEIFYFRMYLAMVLLGATHGLIFLPVLLSYIGP 1252

[Close]
BLAST of ClCG02G009930 vs. Swiss-Prot
Match: NPC1_PIG (Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.5e-50
Identity = 96/176 (54.55%), Postives = 137/176 (77.84%), Query Frame = 1 

Query: 3    IFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITS-SLWSSGIIILVLAMIVID 62
            +FPYSVFY+F+EQYL +    + N+ ++LGAIF+V++V+    LW++ I+ + +AMI+++
Sbjct: 1077 VFPYSVFYVFYEQYLTVIDDTIFNLGVSLGAIFLVTVVLMGCELWATVIMCVTIAMILVN 1136

Query: 63   LMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAFLVSC-GDRSQRAQEALSTVGAS 122
            + GVM +  I LNAVS+VN++MS GI+VEFC H+  AF +S  G R  RA+EAL+ +G+S
Sbjct: 1137 MFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTLSTKGSRVDRAEEALAHMGSS 1196

Query: 123  VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGP 177
            VFSGITLTK  G++VL FAKS+IF ++YF+MYLA+V++G  HGL+FLPV+LS IGP
Sbjct: 1197 VFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAIVLLGATHGLIFLPVLLSYIGP 1252

[Close]
BLAST of ClCG02G009930 vs. Swiss-Prot
Match: NPC1_YEAST (Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.5e-39
Identity = 83/182 (45.60%), Postives = 121/182 (66.48%), Query Frame = 1 

Query: 1    MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGIIILVLAMIVI 60
            +D+F YS FYIFF QY  +    L  I  A+  IF +S V   ++ SS ++ LV+ MI++
Sbjct: 979  LDMFAYSPFYIFFVQYQTLGPLTLKLIGSAIILIFFISSVFLQNIRSSFLLALVVTMIIV 1038

Query: 61   DLMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAFLV----SCGDRSQRAQEALST 120
            D+  +MA+L I LNAVS+VN+++ +G+ VEFC+H+V +F V    +  D + R   +L+T
Sbjct: 1039 DIGALMALLGISLNAVSLVNLIICVGLGVEFCVHIVRSFTVVPSETKKDANSRVLYSLNT 1098

Query: 121  VGASVFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGP 179
            +G SV  GITLTK +GV VL FA+S+IF V+YF+M+  L+I+  LH L+FLP +LS+ G 
Sbjct: 1099 IGESVIKGITLTKFIGVCVLAFAQSKIFDVFYFRMWFTLIIVAALHALLFLPALLSLFGG 1158

[Close]
BLAST of ClCG02G009930 vs. Swiss-Prot
Match: NPCL1_HUMAN (Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2)

HSP 1 Score: 142.1 bits (357), Expect = 6.3e-33
Identity = 68/177 (38.42%), Postives = 119/177 (67.23%), Query Frame = 1 

Query: 2    DIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGII-ILVLAMIVI 61
            ++FPY++  +F+EQYL I    L  +++ L   F VS ++      SG++ +L + MI++
Sbjct: 1118 EVFPYTITNVFYEQYLTILPEGLFMLSLCLVPTFAVSCLLLGLDLRSGLLNLLSIVMILV 1177

Query: 62   DLMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAFLVSCGDR-SQRAQEALSTVGA 121
            D +G MA+  I  NAVS++N++ ++G++VEF  H+  +F +S      +RA+EA  ++G+
Sbjct: 1178 DTVGFMALWGISYNAVSLINLVSAVGMSVEFVSHITRSFAISTKPTWLERAKEATISMGS 1237

Query: 122  SVFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGP 177
            +VF+G+ +T L G++VL  AK+++  +++F++ L + ++G LHGLVFLPVILS +GP
Sbjct: 1238 AVFAGVAMTNLPGILVLGLAKAQLIQIFFFRLNLLITLLGLLHGLVFLPVILSYVGP 1294

[Close]
BLAST of ClCG02G009930 vs. TrEMBL
Match: A0A0A0KAC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G120400 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 1.9e-97
Identity = 187/195 (95.90%), Postives = 192/195 (98.46%), Query Frame = 1 

Query: 1   MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGIIILVLAMIVI 60
           MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSG+IILVLAMIVI
Sbjct: 1   MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGMIILVLAMIVI 60

Query: 61  DLMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAFLVSCGDRSQRAQEALSTVGAS 120
           DL+GVMAVLKIQLNAVSVVNILMSIGIAVEFC+HLVHAF VSCGDRSQRAQEALST+GAS
Sbjct: 61  DLLGVMAVLKIQLNAVSVVNILMSIGIAVEFCVHLVHAFSVSCGDRSQRAQEALSTIGAS 120

Query: 121 VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRY 180
           VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRY
Sbjct: 121 VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRY 180

Query: 181 LVEDDAPTETELLVS 196
           L+ DDAP ETELLVS
Sbjct: 181 LISDDAPMETELLVS 195

[Close]
BLAST of ClCG02G009930 vs. TrEMBL
Match: V7B9Q8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G291900g PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.3e-80
Identity = 155/194 (79.90%), Postives = 173/194 (89.18%), Query Frame = 1 

Query: 1    MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGIIILVLAMIVI 60
            MDIFPYSVFYIFFEQYLDIWK +L+NI IALGAIF+V LVITSSLWSS I++LVL MI++
Sbjct: 1087 MDIFPYSVFYIFFEQYLDIWKLSLINITIALGAIFVVCLVITSSLWSSAIVLLVLVMIIL 1146

Query: 61   DLMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAFLVSCGDRSQRAQEALSTVGAS 120
            DLMGVMA+L IQLNAVSVVN++MS+GIAVEFC+H+VHAF VS GDRSQRA+ AL TVGAS
Sbjct: 1147 DLMGVMAILGIQLNAVSVVNLVMSLGIAVEFCVHIVHAFTVSLGDRSQRAKTALCTVGAS 1206

Query: 121  VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRY 180
            VFSGITLTKLVGVIVLCF+ SE+FVVYYFQMYLALVIIGFLHGLVFLPV+LS+ GPP RY
Sbjct: 1207 VFSGITLTKLVGVIVLCFSTSELFVVYYFQMYLALVIIGFLHGLVFLPVLLSLFGPPLRY 1266

Query: 181  LV-----EDDAPTE 190
             V     EDD P E
Sbjct: 1267 TVIKEQLEDDVPYE 1280

[Close]
BLAST of ClCG02G009930 vs. TrEMBL
Match: B9SMD3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0512970 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 3.7e-80
Identity = 153/184 (83.15%), Postives = 175/184 (95.11%), Query Frame = 1 

Query: 1   MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGIIILVLAMIVI 60
           +DIFPYSVFYIFFEQYLDIW+ AL+NIAIALGAIFIV LVITSSLWSS II+LVL MIV+
Sbjct: 389 IDIFPYSVFYIFFEQYLDIWRIALINIAIALGAIFIVCLVITSSLWSSAIILLVLLMIVV 448

Query: 61  DLMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAFLVSCGDRSQRAQEALSTVGAS 120
           DLMGVMA+L IQLNAVSVVN++MSIGIAVEFC+H+VHAFLVS GDRS RA+EAL+T+GAS
Sbjct: 449 DLMGVMAILDIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHGDRSTRAKEALTTMGAS 508

Query: 121 VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRY 180
           VFSGITLTKLVGVIVL F++SEIFVVYYFQMYLALV+IGFLHGLVFLPVILSM GPP+R+
Sbjct: 509 VFSGITLTKLVGVIVLFFSRSEIFVVYYFQMYLALVLIGFLHGLVFLPVILSMFGPPARH 568

Query: 181 LVED 185
           ++++
Sbjct: 569 VIKN 572

[Close]
BLAST of ClCG02G009930 vs. TrEMBL
Match: A0A0J8EE39_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g212490 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 6.3e-80
Identity = 150/179 (83.80%), Postives = 171/179 (95.53%), Query Frame = 1 

Query: 1    MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGIIILVLAMIVI 60
            MDIFPYSVFYIFFEQYLDIW+TAL+N+AIALGA+F+V +VI+SSLWSS II+LVLAMIV+
Sbjct: 1085 MDIFPYSVFYIFFEQYLDIWRTALINLAIALGAVFVVCVVISSSLWSSAIILLVLAMIVV 1144

Query: 61   DLMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAFLVSCGDRSQRAQEALSTVGAS 120
            DLMGVMA+L IQLNAVSVVN++MSIGIAVEFC+H+ HAF VS GDR++RA+EAL T+GAS
Sbjct: 1145 DLMGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHITHAFSVSQGDRNKRAKEALGTMGAS 1204

Query: 121  VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSR 180
            VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGL+FLPV+LS+IGPP R
Sbjct: 1205 VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLIFLPVLLSLIGPPPR 1263

[Close]
BLAST of ClCG02G009930 vs. TrEMBL
Match: V4S5N4_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100301201mg PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 8.2e-80
Identity = 150/182 (82.42%), Postives = 175/182 (96.15%), Query Frame = 1 

Query: 1   MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGIIILVLAMIVI 60
           ++IFPYSVFYIFFEQYLDIW+ AL+NIA+ALGAIFIV L++TSSLWSS II++VL MIVI
Sbjct: 594 INIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVI 653

Query: 61  DLMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAFLVSCGDRSQRAQEALSTVGAS 120
           DL+GVMA+L IQLNAVSVVN++MSIGIAVEFC+H+VHAFLVS G+R+QR+Q+ALST+GAS
Sbjct: 654 DLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGAS 713

Query: 121 VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRY 180
           VFSGITLTKLVGVIVLCFA+SEIFVVYYFQMYLALVIIGFLHGLVFLPVILS+ GPPSR+
Sbjct: 714 VFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRH 773

Query: 181 LV 183
           ++
Sbjct: 774 II 775

[Close]
BLAST of ClCG02G009930 vs. TAIR10
Match: AT4G38350.2 (AT4G38350.2 Patched family protein)

HSP 1 Score: 287.3 bits (734), Expect = 6.9e-78
Identity = 144/189 (76.19%), Postives = 163/189 (86.24%), Query Frame = 1 

Query: 1    MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGIIILVLAMIVI 60
            +DIFPYSVFYIFFEQYL+IW  AL N+AIA+GAIFIV  +ITSS WSS II+LVL MI++
Sbjct: 1101 IDIFPYSVFYIFFEQYLNIWTVALTNLAIAIGAIFIVCWLITSSAWSSAIIVLVLVMILV 1160

Query: 61   DLMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAFLVSCGDRSQRAQEALSTVGAS 120
            DLMG+M +L IQLNAVSVVN++MSIGIAVEFC+H+ HAFL+S GDR  RA+EAL T+GAS
Sbjct: 1161 DLMGMMVILGIQLNAVSVVNLIMSIGIAVEFCVHISHAFLMSSGDREHRAREALETMGAS 1220

Query: 121  VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRY 180
            VFSGITLTKLVGVIVLCFA+SEIFVVYYFQMYLALVIIGFLHGLVFLPVILS+ GPP   
Sbjct: 1221 VFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLAGPPQLN 1280

Query: 181  LVEDDAPTE 190
            L  +   T+
Sbjct: 1281 LDIEQQQTD 1289

[Close]
BLAST of ClCG02G009930 vs. TAIR10
Match: AT1G42470.1 (AT1G42470.1 Patched family protein)

HSP 1 Score: 158.7 bits (400), Expect = 3.7e-39
Identity = 71/99 (71.72%), Postives = 89/99 (89.90%), Query Frame = 1 

Query: 1    MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGIIILVLAMIVI 60
            M+I+PYSVFY+FFEQYLDIWKTAL+N++IA+ A+F+V L+IT S WSS II+LV+AMI+I
Sbjct: 1066 MEIYPYSVFYMFFEQYLDIWKTALINLSIAIAAVFVVCLIITCSFWSSAIILLVIAMIII 1125

Query: 61   DLMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAF 100
            DL+GVMAV  IQLNA+SVVN++MS+GIAVEFC+H+ HAF
Sbjct: 1126 DLLGVMAVFHIQLNALSVVNLIMSVGIAVEFCVHITHAF 1164

[Close]
BLAST of ClCG02G009930 vs. NCBI nr
Match: gi|778712664|ref|XP_011656917.1| (PREDICTED: Niemann-Pick C1 protein isoform X1 [Cucumis sativus])

HSP 1 Score: 363.2 bits (931), Expect = 2.8e-97
Identity = 187/195 (95.90%), Postives = 192/195 (98.46%), Query Frame = 1 

Query: 1    MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGIIILVLAMIVI 60
            MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSG+IILVLAMIVI
Sbjct: 1108 MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGMIILVLAMIVI 1167

Query: 61   DLMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAFLVSCGDRSQRAQEALSTVGAS 120
            DL+GVMAVLKIQLNAVSVVNILMSIGIAVEFC+HLVHAF VSCGDRSQRAQEALST+GAS
Sbjct: 1168 DLLGVMAVLKIQLNAVSVVNILMSIGIAVEFCVHLVHAFSVSCGDRSQRAQEALSTIGAS 1227

Query: 121  VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRY 180
            VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRY
Sbjct: 1228 VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRY 1287

Query: 181  LVEDDAPTETELLVS 196
            L+ DDAP ETELLVS
Sbjct: 1288 LISDDAPMETELLVS 1302

[Close]
BLAST of ClCG02G009930 vs. NCBI nr
Match: gi|700191466|gb|KGN46670.1| (hypothetical protein Csa_6G120400 [Cucumis sativus])

HSP 1 Score: 363.2 bits (931), Expect = 2.8e-97
Identity = 187/195 (95.90%), Postives = 192/195 (98.46%), Query Frame = 1 

Query: 1   MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGIIILVLAMIVI 60
           MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSG+IILVLAMIVI
Sbjct: 1   MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGMIILVLAMIVI 60

Query: 61  DLMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAFLVSCGDRSQRAQEALSTVGAS 120
           DL+GVMAVLKIQLNAVSVVNILMSIGIAVEFC+HLVHAF VSCGDRSQRAQEALST+GAS
Sbjct: 61  DLLGVMAVLKIQLNAVSVVNILMSIGIAVEFCVHLVHAFSVSCGDRSQRAQEALSTIGAS 120

Query: 121 VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRY 180
           VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRY
Sbjct: 121 VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRY 180

Query: 181 LVEDDAPTETELLVS 196
           L+ DDAP ETELLVS
Sbjct: 181 LISDDAPMETELLVS 195

[Close]
BLAST of ClCG02G009930 vs. NCBI nr
Match: gi|659094693|ref|XP_008448194.1| (PREDICTED: Niemann-Pick C1 protein-like isoform X2 [Cucumis melo])

HSP 1 Score: 358.2 bits (918), Expect = 9.0e-96
Identity = 182/195 (93.33%), Postives = 191/195 (97.95%), Query Frame = 1 

Query: 1    MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGIIILVLAMIVI 60
            MDIFPYSVFYIFFEQYLDIW TALMNIAIALGAIFIVSLVITSSLW SG+IILVLAMIVI
Sbjct: 1107 MDIFPYSVFYIFFEQYLDIWNTALMNIAIALGAIFIVSLVITSSLWCSGMIILVLAMIVI 1166

Query: 61   DLMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAFLVSCGDRSQRAQEALSTVGAS 120
            DL+GVMA+LKIQLNAVSVVNILMSIGIAVEFC+HLVHAF VSCGDR+QRAQEALST+GAS
Sbjct: 1167 DLLGVMAILKIQLNAVSVVNILMSIGIAVEFCVHLVHAFSVSCGDRNQRAQEALSTIGAS 1226

Query: 121  VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRY 180
            VFSGITLTKLVGV+VLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRY
Sbjct: 1227 VFSGITLTKLVGVVVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRY 1286

Query: 181  LVEDDAPTETELLVS 196
            L++DDAP ETELLVS
Sbjct: 1287 LIKDDAPVETELLVS 1301

[Close]
BLAST of ClCG02G009930 vs. NCBI nr
Match: gi|659094691|ref|XP_008448193.1| (PREDICTED: Niemann-Pick C1 protein-like isoform X1 [Cucumis melo])

HSP 1 Score: 350.5 bits (898), Expect = 1.9e-93
Identity = 182/205 (88.78%), Postives = 191/205 (93.17%), Query Frame = 1 

Query: 1    MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGIIILVLAMIVI 60
            MDIFPYSVFYIFFEQYLDIW TALMNIAIALGAIFIVSLVITSSLW SG+IILVLAMIVI
Sbjct: 1107 MDIFPYSVFYIFFEQYLDIWNTALMNIAIALGAIFIVSLVITSSLWCSGMIILVLAMIVI 1166

Query: 61   DLMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAF----------LVSCGDRSQRA 120
            DL+GVMA+LKIQLNAVSVVNILMSIGIAVEFC+HLVHAF           VSCGDR+QRA
Sbjct: 1167 DLLGVMAILKIQLNAVSVVNILMSIGIAVEFCVHLVHAFSVSTNPTHFITVSCGDRNQRA 1226

Query: 121  QEALSTVGASVFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVI 180
            QEALST+GASVFSGITLTKLVGV+VLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVI
Sbjct: 1227 QEALSTIGASVFSGITLTKLVGVVVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVI 1286

Query: 181  LSMIGPPSRYLVEDDAPTETELLVS 196
            LSMIGPPSRYL++DDAP ETELLVS
Sbjct: 1287 LSMIGPPSRYLIKDDAPVETELLVS 1311

[Close]
BLAST of ClCG02G009930 vs. NCBI nr
Match: gi|593571198|ref|XP_007142570.1| (hypothetical protein PHAVU_008G291900g [Phaseolus vulgaris])

HSP 1 Score: 307.4 bits (786), Expect = 1.8e-80
Identity = 155/194 (79.90%), Postives = 173/194 (89.18%), Query Frame = 1 

Query: 1    MDIFPYSVFYIFFEQYLDIWKTALMNIAIALGAIFIVSLVITSSLWSSGIIILVLAMIVI 60
            MDIFPYSVFYIFFEQYLDIWK +L+NI IALGAIF+V LVITSSLWSS I++LVL MI++
Sbjct: 1087 MDIFPYSVFYIFFEQYLDIWKLSLINITIALGAIFVVCLVITSSLWSSAIVLLVLVMIIL 1146

Query: 61   DLMGVMAVLKIQLNAVSVVNILMSIGIAVEFCIHLVHAFLVSCGDRSQRAQEALSTVGAS 120
            DLMGVMA+L IQLNAVSVVN++MS+GIAVEFC+H+VHAF VS GDRSQRA+ AL TVGAS
Sbjct: 1147 DLMGVMAILGIQLNAVSVVNLVMSLGIAVEFCVHIVHAFTVSLGDRSQRAKTALCTVGAS 1206

Query: 121  VFSGITLTKLVGVIVLCFAKSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSMIGPPSRY 180
            VFSGITLTKLVGVIVLCF+ SE+FVVYYFQMYLALVIIGFLHGLVFLPV+LS+ GPP RY
Sbjct: 1207 VFSGITLTKLVGVIVLCFSTSELFVVYYFQMYLALVIIGFLHGLVFLPVLLSLFGPPLRY 1266

Query: 181  LV-----EDDAPTE 190
             V     EDD P E
Sbjct: 1267 TVIKEQLEDDVPYE 1280

The following BLAST results are available for this feature:
BLAST of ClCG02G009930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NPC1_HUMAN2.3e-5155.68Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2[more]
NPC1_MOUSE2.3e-5155.68Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2[more]
NPC1_PIG1.5e-5054.55Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1[more]
NPC1_YEAST3.5e-3945.60Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae (strain ATCC 2... [more]
NPCL1_HUMAN6.3e-3338.42Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2[more]
BLAST of ClCG02G009930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAC3_CUCSA1.9e-9795.90Uncharacterized protein OS=Cucumis sativus GN=Csa_6G120400 PE=4 SV=1[more]
V7B9Q8_PHAVU1.3e-8079.90Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G291900g PE=4 SV=1[more]
B9SMD3_RICCO3.7e-8083.15Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0512970 PE=4 SV=1[more]
A0A0J8EE39_BETVU6.3e-8083.80Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g212490 PE=4 S... [more]
V4S5N4_9ROSI8.2e-8082.42Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100301201mg PE... [more]
BLAST of ClCG02G009930 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G38350.26.9e-7876.19 Patched family protein[more]
AT1G42470.13.7e-3971.72 Patched family protein[more]
BLAST of ClCG02G009930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778712664|ref|XP_011656917.1|2.8e-9795.90PREDICTED: Niemann-Pick C1 protein isoform X1 [Cucumis sativus][more]
gi|700191466|gb|KGN46670.1|2.8e-9795.90hypothetical protein Csa_6G120400 [Cucumis sativus][more]
gi|659094693|ref|XP_008448194.1|9.0e-9693.33PREDICTED: Niemann-Pick C1 protein-like isoform X2 [Cucumis melo][more]
gi|659094691|ref|XP_008448193.1|1.9e-9388.78PREDICTED: Niemann-Pick C1 protein-like isoform X1 [Cucumis melo][more]
gi|593571198|ref|XP_007142570.1|1.8e-8079.90hypothetical protein PHAVU_008G291900g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003392Ptc/Disp
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030301 cholesterol transport
biological_process GO:0007165 signal transduction
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008158 hedgehog receptor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G009930.1ClCG02G009930.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003392Protein patched/dispatchedPFAMPF02460Patchedcoord: 5..174
score: 5.8
NoneNo IPR availableGENE3DG3DSA:1.20.1640.10coord: 6..178
score: 7.3
NoneNo IPR availablePANTHERPTHR10796PATCHED-RELATEDcoord: 1..182
score: 6.3E
NoneNo IPR availablePANTHERPTHR10796:SF117PATCHED FAMILY PROTEINcoord: 1..182
score: 6.3E
NoneNo IPR availableunknownSSF82866Multidrug efflux transporter AcrB transmembrane domaincoord: 6..175
score: 3.92

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G009930Cla002115Watermelon (97103) v1wcgwmB216
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G009930Watermelon (97103) v2wcgwmbB138
ClCG02G009930Watermelon (97103) v1wcgwmB202