ClCG02G002900 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G002900
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr02 : 2848396 .. 2848986 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGACCCAGAGGAACTAGACTATGGTGTGCAGAAGTATCAAAAGGAAAAGGTAAAGTGGCATCTCGTTCTTTTCTCCATCCAATCAACGATAAACAGTTAAAAGTTGAAGGGAAATGATACCAATTCTAGGCTTAAACTTTTTCAATCATTTGGTCCTTGGGTAAAAAGGTAGTACAAGAATCTAATGAAAGTGATTTTTCTCTCTCAACAATCAACAACCAGAGCAGAAGCAGAGTAAAAAAAATGAACAGATAGTTTGGTAGAGAGAGATATATAGAGGGAGAGGGTTGTAAGAACCCCAAAATAAATGCAGGTCATGTTAGGAGGTAGCACGTACATCGTAAACTTCCACTGCCCTCCTTTTGCGTATGGAGTTGAGAGTTTGGTGGTTAAATGTTGGCATCACCAAGTTGGAGATGCTGACACTGCCACTCGGTGGAGCATCTACAAGAGTCCTACTTCTTCTTTGGCCCGTCCTGACAGCAATGTGCTAGATGTAGATCTTCAAAAGAGACATCTCCATTGTTGCCATAAAAATCTTCACTGTTTCTTCACATTCAAAGCAATCCCATTCACAATTATCTAG

mRNA sequence

ATGGCAGACCCAGAGGAACTAGACTATGGTGTGCAGAAGTATCAAAAGGAAAAGGTCATGTTAGGAGGTAGCACGTACATCGTAAACTTCCACTGCCCTCCTTTTGCGTATGGAGTTGAGAGTTTGGTGGTTAAATGTTGGCATCACCAAGTTGGAGATGCTGACACTGCCACTCGGTGGAGCATCTACAAGAGTCCTACTTCTTCTTTGGCCCGTCCTGACAGCAATGTGCTAGATGTAGATCTTCAAAAGAGACATCTCCATTGTTGCCATAAAAATCTTCACTGTTTCTTCACATTCAAAGCAATCCCATTCACAATTATCTAG

Coding sequence (CDS)

ATGGCAGACCCAGAGGAACTAGACTATGGTGTGCAGAAGTATCAAAAGGAAAAGGTCATGTTAGGAGGTAGCACGTACATCGTAAACTTCCACTGCCCTCCTTTTGCGTATGGAGTTGAGAGTTTGGTGGTTAAATGTTGGCATCACCAAGTTGGAGATGCTGACACTGCCACTCGGTGGAGCATCTACAAGAGTCCTACTTCTTCTTTGGCCCGTCCTGACAGCAATGTGCTAGATGTAGATCTTCAAAAGAGACATCTCCATTGTTGCCATAAAAATCTTCACTGTTTCTTCACATTCAAAGCAATCCCATTCACAATTATCTAG

Protein sequence

MADPEELDYGVQKYQKEKVMLGGSTYIVNFHCPPFAYGVESLVVKCWHHQVGDADTATRWSIYKSPTSSLARPDSNVLDVDLQKRHLHCCHKNLHCFFTFKAIPFTII
Homology
[Close]
BLAST of ClCG02G002900 vs. TrEMBL
Match: A0A0A0K6F3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031670 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.4e-19
Identity = 50/62 (80.65%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 18 KVMLGGSTYIVNFHCPPFAYGVESLVVKCWHHQVGDADTATRWSIYKS-PTSSLARPDSN 77
          + MLGGSTYIVN HC PFAYGVESLVVKCWHHQVGDADTATRWSIY S    SL   DSN
Sbjct: 2  QAMLGGSTYIVNCHCSPFAYGVESLVVKCWHHQVGDADTATRWSIYMSLLLLSLGHADSN 61

Query: 78 VL 79
          VL
Sbjct: 62 VL 63

[Close]
BLAST of ClCG02G002900 vs. NCBI nr
Match: gi|700188173|gb|KGN43406.1| (hypothetical protein Csa_7G031670 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 4.9e-19
Identity = 50/62 (80.65%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 18 KVMLGGSTYIVNFHCPPFAYGVESLVVKCWHHQVGDADTATRWSIYKS-PTSSLARPDSN 77
          + MLGGSTYIVN HC PFAYGVESLVVKCWHHQVGDADTATRWSIY S    SL   DSN
Sbjct: 2  QAMLGGSTYIVNCHCSPFAYGVESLVVKCWHHQVGDADTATRWSIYMSLLLLSLGHADSN 61

Query: 78 VL 79
          VL
Sbjct: 62 VL 63

The following BLAST results are available for this feature:
BLAST of ClCG02G002900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6F3_CUCSA3.4e-1980.65Uncharacterized protein OS=Cucumis sativus GN=Csa_7G031670 PE=4 SV=1[more]
BLAST of ClCG02G002900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188173|gb|KGN43406.1|4.9e-1980.65hypothetical protein Csa_7G031670 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G002900.1ClCG02G002900.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G002900Csa7G031670Cucumber (Chinese Long) v2cuwcgB546
ClCG02G002900Cla97C02G029410Watermelon (97103) v2wcgwmbB138
ClCG02G002900CSPI07G02650Wild cucumber (PI 183967)cpiwcgB574
ClCG02G002900CsaV3_7G002500Cucumber (Chinese Long) v3cucwcgB571
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G002900Wax gourdwcgwgoB266
ClCG02G002900Wax gourdwcgwgoB305
ClCG02G002900Watermelon (Charleston Gray)wcgwcgB047
ClCG02G002900Cucumber (Gy14) v1cgywcgB130
ClCG02G002900Cucumber (Gy14) v1cgywcgB185
ClCG02G002900Cucurbita maxima (Rimu)cmawcgB097
ClCG02G002900Cucurbita maxima (Rimu)cmawcgB103
ClCG02G002900Cucurbita maxima (Rimu)cmawcgB460
ClCG02G002900Cucurbita maxima (Rimu)cmawcgB483
ClCG02G002900Cucurbita maxima (Rimu)cmawcgB540
ClCG02G002900Cucurbita moschata (Rifu)cmowcgB091
ClCG02G002900Cucurbita moschata (Rifu)cmowcgB094
ClCG02G002900Cucurbita moschata (Rifu)cmowcgB459
ClCG02G002900Cucurbita moschata (Rifu)cmowcgB483
ClCG02G002900Wild cucumber (PI 183967)cpiwcgB465
ClCG02G002900Cucumber (Chinese Long) v2cuwcgB443
ClCG02G002900Melon (DHL92) v3.5.1mewcgB092
ClCG02G002900Melon (DHL92) v3.5.1mewcgB195
ClCG02G002900Watermelon (97103) v1wcgwmB198
ClCG02G002900Cucurbita pepo (Zucchini)cpewcgB233
ClCG02G002900Cucurbita pepo (Zucchini)cpewcgB267
ClCG02G002900Cucurbita pepo (Zucchini)cpewcgB593
ClCG02G002900Bottle gourd (USVL1VR-Ls)lsiwcgB058
ClCG02G002900Bottle gourd (USVL1VR-Ls)lsiwcgB097
ClCG02G002900Cucumber (Gy14) v2cgybwcgB409
ClCG02G002900Cucumber (Gy14) v2cgybwcgB506
ClCG02G002900Melon (DHL92) v3.6.1medwcgB094
ClCG02G002900Melon (DHL92) v3.6.1medwcgB190
ClCG02G002900Silver-seed gourdcarwcgB0194
ClCG02G002900Silver-seed gourdcarwcgB0336
ClCG02G002900Silver-seed gourdcarwcgB0782
ClCG02G002900Silver-seed gourdcarwcgB1037
ClCG02G002900Silver-seed gourdcarwcgB1038
ClCG02G002900Cucumber (Chinese Long) v3cucwcgB464