ClCG02G000330 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G000330
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	60S ribosomal protein L10
Location	CG_Chr02 : 422844 .. 424088 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGACCTGCTAGATGTTACCGCCAAATCAAGAACAAGCCGTATCCCAAATCGCGGTTTTGTCGCGGTGTTCCCGATCCCAAGATCAGGATTTATGATGTTGGAATGAAGAAGAAAGGTGTTGATGAATTCCCCTTCTGTGTTCATCTTGTGAGTTGGGAGAAAGAGAATGTTTCCAGTGAAGCTTTGGAAGCAGCTCGTATTGCCTGTAATAAGTACATGGCGAAATTTGCTGGGAAAGATGCGTTTCATTTGAGGGTTAGAGTTCATCCCTTCCATGTTCTTCGAATTAACAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAAACTGGCATGAGAGGTGCTTTTGGTAAGCCACAAGGAACTTGTGCGAGAGTTGCCATTGGTCAGGTTCTTCTTTCTGTTCGATGCAAGGACAGCAACAGCCAGCATGCTCAGGAGGCCCTCCGCCGTGCTAAGTTCAAGTTCCCTGGTCGTCAGAAGATCATTGTTAGCAGGAAGTGGTATGACTCTTCATTCTGATCTCACTTGATCTGTATTAAGTTCCAATTCTCCTCCCTTGAGTGTATATTTGATTGAATGATGAATGTACAAACTTTTCTATCTCAGGGGATTCACTAAATTCAGCCGAGCTGATTATCTCAAGTTCAAGTCAGAGAACAAAATTATGCCAGATGGTGTTAATGCCAAGGTATTTGATACCAGATAATTGCATTCATGTTCTAATCTAGGAGAATGAATCTAATTGTAGTCAGGGGAGGCTACTTTTTCTTCTATTAATAGAAGTTCATTGTATTTAATTGTAGTTATTCCCTAGAAATGCTATGAATGGGGCTTCCTTGTTAGCCCGGAGGACCATATTTTGAATTGCGTTCTATTATATATTTCTGGGTTGTTCATCACTTATAAGCCACAATCACTGGATCAATATGTTTATATATTTCTATAGTTTGTTCTGAGTTGCATTGTTAAAAAATTTTGAGTTAAACTTATGGTGTGTAAATTGGACTCTGCAGCTTCTTGGATGCCATGGGCCTCTTGCAAACCGTCAGCCCGGAAGAGCTTTTCTACCCCAAACTGCCTAAGCTAAGCTAGTTAATTTTTCGTTTTTAAAATTATATGGAATTAATGTCGACATTATTACCATTGTCTCTGTTTGAACATTGTGAAATGAGCGAGTCTCCTTTTTTGCTGTGGTTTATTACTTTTTTATATTGGAATGAAACTTCATTTCTTTTGATTTT

mRNA sequence

AGGACCTGCTAGATGTTACCGCCAAATCAAGAACAAGCCGTATCCCAAATCGCGGTTTTGTCGCGGTGTTCCCGATCCCAAGATCAGGATTTATGATGTTGGAATGAAGAAGAAAGGTGTTGATGAATTCCCCTTCTGTGTTCATCTTGTGAGTTGGGAGAAAGAGAATGTTTCCAGTGAAGCTTTGGAAGCAGCTCGTATTGCCTGTAATAAGTACATGGCGAAATTTGCTGGGAAAGATGCGTTTCATTTGAGGGTTAGAGTTCATCCCTTCCATGTTCTTCGAATTAACAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAAACTGGCATGAGAGGTGCTTTTGGTAAGCCACAAGGAACTTGTGCGAGAGTTGCCATTGGTCAGGTTCTTCTTTCTGTTCGATGCAAGGACAGCAACAGCCAGCATGCTCAGGAGGCCCTCCGCCGTGCTAAGTTCAAGTTCCCTGGTCGTCAGAAGATCATTGTTAGCAGGAAGTGGGGATTCACTAAATTCAGCCGAGCTGATTATCTCAAGTTCAAGTCAGAGAACAAAATTATGCCAGATGGTGTTAATGCCAAGCTTCTTGGATGCCATGGGCCTCTTGCAAACCGTCAGCCCGGAAGAGCTTTTCTACCCCAAACTGCCTAAGCTAAGCTAGTTAATTTTTCGTTTTTAAAATTATATGGAATTAATGTCGACATTATTACCATTGTCTCTGTTTGAACATTGTGAAATGAGCGAGTCTCCTTTTTTGCTGTGGTTTATTACTTTTTTATATTGGAATGAAACTTCATTTCTTTTGATTTT

Coding sequence (CDS)

ATGAAGAAGAAAGGTGTTGATGAATTCCCCTTCTGTGTTCATCTTGTGAGTTGGGAGAAAGAGAATGTTTCCAGTGAAGCTTTGGAAGCAGCTCGTATTGCCTGTAATAAGTACATGGCGAAATTTGCTGGGAAAGATGCGTTTCATTTGAGGGTTAGAGTTCATCCCTTCCATGTTCTTCGAATTAACAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAAACTGGCATGAGAGGTGCTTTTGGTAAGCCACAAGGAACTTGTGCGAGAGTTGCCATTGGTCAGGTTCTTCTTTCTGTTCGATGCAAGGACAGCAACAGCCAGCATGCTCAGGAGGCCCTCCGCCGTGCTAAGTTCAAGTTCCCTGGTCGTCAGAAGATCATTGTTAGCAGGAAGTGGGGATTCACTAAATTCAGCCGAGCTGATTATCTCAAGTTCAAGTCAGAGAACAAAATTATGCCAGATGGTGTTAATGCCAAGCTTCTTGGATGCCATGGGCCTCTTGCAAACCGTCAGCCCGGAAGAGCTTTTCTACCCCAAACTGCCTAA

Protein sequence

MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLPQTA

Homology

[Close]

BLAST of ClCG02G000330 vs. Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 5.5e-95
Identity = 164/179 (91.62%), Postives = 172/179 (96.09%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K+AGKDAFHLRVRVHPFHVL
Sbjct: 38  MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVL 97

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGKPQGTCARV+IGQVLLSVRCKD NS HAQEALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNSHHAQEALRRAKF 157

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFL 180
           KFP RQKIIVSRKWGFTKF+R DY+K+KS+N+I+PDGVNAKLLGCHGPLANRQPG+AF+
Sbjct: 158 KFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAFI 216

[Close]

BLAST of ClCG02G000330 vs. Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 7.9e-94
Identity = 167/179 (93.30%), Postives = 169/179 (94.41%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVL
Sbjct: 38  MKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVL 97

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD NS HAQEALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKF 157

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFL 180
           KFPGRQKIIVSRKWGFTKFSR DYLK+KSEN+I+PDGVNAKLLG HGPLA RQPGRAFL
Sbjct: 158 KFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFL 216

[Close]

BLAST of ClCG02G000330 vs. Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.0e-93
Identity = 165/183 (90.16%), Postives = 171/183 (93.44%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM KFAGKDAFHLRVRVHPFHVL
Sbjct: 38  MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVL 97

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD+NS +AQEALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRAKF 157

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLP 180
           KFPGRQKIIVSRKWGFTK +RADY + KSEN+I+PDGVNAKLLGCHG LANR+PGRAF+ 
Sbjct: 158 KFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAFID 217

Query: 181 QTA 184
             A
Sbjct: 218 AVA 220

[Close]

BLAST of ClCG02G000330 vs. Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=1 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 5.3e-90
Identity = 157/180 (87.22%), Postives = 165/180 (91.67%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVL
Sbjct: 38  MKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVL 97

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKF 157

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLP 180
           KFPGRQKIIVSRKWGFTKF+RAD+ K + E +++PDGVNAK L CHGPLANRQPG AFLP
Sbjct: 158 KFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFLP 217

[Close]

BLAST of ClCG02G000330 vs. Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 329.7 bits (844), Expect = 2.0e-89
Identity = 157/179 (87.71%), Postives = 164/179 (91.62%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MK+KGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVL
Sbjct: 38  MKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVL 97

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKF 157

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFL 180
           KFPGRQKIIVSRKWGFTKF+RADY K + E +I+PDGVNAK L CHGPLANRQPG AFL
Sbjct: 158 KFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFL 216

[Close]

BLAST of ClCG02G000330 vs. TrEMBL
Match: A0A0A0LN38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336100 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 3.9e-100
Identity = 181/182 (99.45%), Postives = 181/182 (99.45%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL
Sbjct: 38  MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 97

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 157

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLP 180
           KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFL 
Sbjct: 158 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLS 217

Query: 181 QT 183
           QT
Sbjct: 218 QT 219

[Close]

BLAST of ClCG02G000330 vs. TrEMBL
Match: A0A059AAC5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00099 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 3.7e-98
Identity = 178/183 (97.27%), Postives = 180/183 (98.36%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL
Sbjct: 108 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 167

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNS HAQEALRRAKF
Sbjct: 168 RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKF 227

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLP 180
           KFPGRQKIIVSRKWGFTKFSRADYLK+KSENKI+PDGVNAKLLGCHG LANRQPGRAFLP
Sbjct: 228 KFPGRQKIIVSRKWGFTKFSRADYLKWKSENKIVPDGVNAKLLGCHGRLANRQPGRAFLP 287

Query: 181 QTA 184
            TA
Sbjct: 288 TTA 290

[Close]

BLAST of ClCG02G000330 vs. TrEMBL
Match: A9P8W6_POPTR (60S ribosomal protein L10 OS=Populus trichocarpa GN=POPTR_0019s15250g PE=2 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 2.4e-97
Identity = 174/183 (95.08%), Postives = 179/183 (97.81%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL
Sbjct: 38  MKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 97

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNS HAQEALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKF 157

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLP 180
           KFPGRQKIIVSRKWGFTKF+R DYLK K+ENK+MPDGVNAKLLGCHGPLANRQPGRAFL 
Sbjct: 158 KFPGRQKIIVSRKWGFTKFNRTDYLKLKAENKVMPDGVNAKLLGCHGPLANRQPGRAFLQ 217

Query: 181 QTA 184
           +TA
Sbjct: 218 ETA 220

[Close]

BLAST of ClCG02G000330 vs. TrEMBL
Match: A0A0R4J2Q7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G220000 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 5.3e-97
Identity = 174/179 (97.21%), Postives = 178/179 (99.44%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL
Sbjct: 38  MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 97

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNS HAQEALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKF 157

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFL 180
           KFPGRQKIIVSRKWGFTKFSR+DYLKFKSEN+I+PDGVNAKLLGCHGPLANR+PGRAFL
Sbjct: 158 KFPGRQKIIVSRKWGFTKFSRSDYLKFKSENRIVPDGVNAKLLGCHGPLANREPGRAFL 216

[Close]

BLAST of ClCG02G000330 vs. TrEMBL
Match: C6SVX5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G187800 PE=2 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 5.3e-97
Identity = 174/179 (97.21%), Postives = 178/179 (99.44%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL
Sbjct: 38  MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 97

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNS HAQEALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKF 157

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFL 180
           KFPGRQKIIVSRKWGFTKFSR+DYLKFKSEN+I+PDGVNAKLLGCHGPLANR+PGRAFL
Sbjct: 158 KFPGRQKIIVSRKWGFTKFSRSDYLKFKSENRIVPDGVNAKLLGCHGPLANREPGRAFL 216

[Close]

BLAST of ClCG02G000330 vs. TAIR10
Match: AT1G14320.1 (AT1G14320.1 Ribosomal protein L16p/L10e family protein)

HSP 1 Score: 331.6 bits (849), Expect = 3.0e-91
Identity = 157/180 (87.22%), Postives = 165/180 (91.67%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVL
Sbjct: 38  MKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVL 97

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKF 157

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLP 180
           KFPGRQKIIVSRKWGFTKF+RAD+ K + E +++PDGVNAK L CHGPLANRQPG AFLP
Sbjct: 158 KFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFLP 217

[Close]

BLAST of ClCG02G000330 vs. TAIR10
Match: AT1G26910.1 (AT1G26910.1 Ribosomal protein L16p/L10e family protein)

HSP 1 Score: 329.7 bits (844), Expect = 1.1e-90
Identity = 157/179 (87.71%), Postives = 164/179 (91.62%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MK+KGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVL
Sbjct: 38  MKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVL 97

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKF 157

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFL 180
           KFPGRQKIIVSRKWGFTKF+RADY K + E +I+PDGVNAK L CHGPLANRQPG AFL
Sbjct: 158 KFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFL 216

[Close]

BLAST of ClCG02G000330 vs. TAIR10
Match: AT1G66580.1 (AT1G66580.1 senescence associated gene 24)

HSP 1 Score: 322.4 bits (825), Expect = 1.8e-88
Identity = 155/183 (84.70%), Postives = 165/183 (90.16%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVL
Sbjct: 38  MKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVL 97

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKF 157

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLP 180
           KFPGRQKIIVSRKWGFTKF+RA+Y K ++  +I+PDGVNAK L  HGPLANRQPG AF+ 
Sbjct: 158 KFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGSAFIS 217

Query: 181 QTA 184
            T+
Sbjct: 218 ATS 220

[Close]

BLAST of ClCG02G000330 vs. NCBI nr
Match: gi|659121889|ref|XP_008460864.1| (PREDICTED: 60S ribosomal protein L10 [Cucumis melo])

HSP 1 Score: 376.7 bits (966), Expect = 2.3e-101
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL
Sbjct: 38  MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 97

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 157

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLP 180
           KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLP
Sbjct: 158 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLP 217

Query: 181 QTA 184
           QTA
Sbjct: 218 QTA 220

[Close]

BLAST of ClCG02G000330 vs. NCBI nr
Match: gi|449459224|ref|XP_004147346.1| (PREDICTED: 60S ribosomal protein L10 [Cucumis sativus])

HSP 1 Score: 372.1 bits (954), Expect = 5.6e-100
Identity = 181/182 (99.45%), Postives = 181/182 (99.45%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL
Sbjct: 38  MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 97

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 157

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLP 180
           KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFL 
Sbjct: 158 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLS 217

Query: 181 QT 183
           QT
Sbjct: 218 QT 219

[Close]

BLAST of ClCG02G000330 vs. NCBI nr
Match: gi|659119109|ref|XP_008459481.1| (PREDICTED: 60S ribosomal protein L10-like [Cucumis melo])

HSP 1 Score: 370.9 bits (951), Expect = 1.3e-99
Identity = 179/183 (97.81%), Postives = 182/183 (99.45%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL
Sbjct: 63  MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 122

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF
Sbjct: 123 RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 182

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLP 180
           KFPGRQKIIVSRKWGFTKFSRADYL +K+ENKI+PDGVNAKLLGCHGPLANRQPGRAFLP
Sbjct: 183 KFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLP 242

Query: 181 QTA 184
           QTA
Sbjct: 243 QTA 245

[Close]

BLAST of ClCG02G000330 vs. NCBI nr
Match: gi|1012118550|ref|XP_015961744.1| (PREDICTED: 60S ribosomal protein L10 [Arachis duranensis])

HSP 1 Score: 369.4 bits (947), Expect = 3.7e-99
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL
Sbjct: 38  MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 97

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNS HAQEALRRAKF
Sbjct: 98  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKF 157

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLP 180
           KFPGRQKII+SRKWGFTKFSRADYLKFKSEN+IMPDGVNAKLLGCHGPLANRQPGRAFLP
Sbjct: 158 KFPGRQKIIISRKWGFTKFSRADYLKFKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLP 217

Query: 181 QTA 184
            +A
Sbjct: 218 PSA 220

[Close]

BLAST of ClCG02G000330 vs. NCBI nr
Match: gi|629083963|gb|KCW50320.1| (hypothetical protein EUGRSUZ_J00099 [Eucalyptus grandis])

HSP 1 Score: 365.5 bits (937), Expect = 5.3e-98
Identity = 178/183 (97.27%), Postives = 180/183 (98.36%), Query Frame = 1


Query: 1   MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 60
           MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL
Sbjct: 108 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVL 167

Query: 61  RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKF 120
           RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNS HAQEALRRAKF
Sbjct: 168 RINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKF 227

Query: 121 KFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLP 180
           KFPGRQKIIVSRKWGFTKFSRADYLK+KSENKI+PDGVNAKLLGCHG LANRQPGRAFLP
Sbjct: 228 KFPGRQKIIVSRKWGFTKFSRADYLKWKSENKIVPDGVNAKLLGCHGRLANRQPGRAFLP 287

Query: 181 QTA 184
            TA
Sbjct: 288 TTA 290

The following BLAST results are available for this feature:

BLAST of ClCG02G000330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL10_VITRI	5.5e-95	91.62	60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1	[more]
RL10_SOLME	7.9e-94	93.30	60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1	[more]
RL10_EUPES	3.0e-93	90.16	60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1	[more]
RL101_ARATH	5.3e-90	87.22	60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=1 SV=1	[more]
RL102_ARATH	2.0e-89	87.71	60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2	[more]

BLAST of ClCG02G000330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LN38_CUCSA	3.9e-100	99.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336100 PE=4 SV=1	[more]
A0A059AAC5_EUCGR	3.7e-98	97.27	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00099 PE=4 SV=1	[more]
A9P8W6_POPTR	2.4e-97	95.08	60S ribosomal protein L10 OS=Populus trichocarpa GN=POPTR_0019s15250g PE=2 SV=1	[more]
A0A0R4J2Q7_SOYBN	5.3e-97	97.21	Uncharacterized protein OS=Glycine max GN=GLYMA_02G220000 PE=4 SV=1	[more]
C6SVX5_SOYBN	5.3e-97	97.21	Uncharacterized protein OS=Glycine max GN=GLYMA_14G187800 PE=2 SV=1	[more]

BLAST of ClCG02G000330 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14320.1	3.0e-91	87.22	Ribosomal protein L16p/L10e family protein	[more]
AT1G26910.1	1.1e-90	87.71	Ribosomal protein L16p/L10e family protein	[more]
AT1G66580.1	1.8e-88	84.70	senescence associated gene 24	[more]

BLAST of ClCG02G000330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121889\|ref\|XP_008460864.1\|	2.3e-101	100.00	PREDICTED: 60S ribosomal protein L10 [Cucumis melo]	[more]
gi\|449459224\|ref\|XP_004147346.1\|	5.6e-100	99.45	PREDICTED: 60S ribosomal protein L10 [Cucumis sativus]	[more]
gi\|659119109\|ref\|XP_008459481.1\|	1.3e-99	97.81	PREDICTED: 60S ribosomal protein L10-like [Cucumis melo]	[more]
gi\|1012118550\|ref\|XP_015961744.1\|	3.7e-99	97.27	PREDICTED: 60S ribosomal protein L10 [Arachis duranensis]	[more]
gi\|629083963\|gb\|KCW50320.1\|	5.3e-98	97.27	hypothetical protein EUGRSUZ_J00099 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016180	Ribosomal_L10e/L16
IPR018255	Ribosomal_L10e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0000027	ribosomal large subunit assembly
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G000330.1	ClCG02G000330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016180	Ribosomal protein L10e/L16	GENE3D	G3DSA:3.90.1170.10		coord: 2..136 score: 1.2
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 13..129 score: 1.2
IPR016180	Ribosomal protein L10e/L16	unknown	SSF54686	Ribosomal protein L16p/L10e	coord: 3..139 score: 8.37
IPR018255	Ribosomal protein L10e, conserved site	PROSITE	PS01257	RIBOSOMAL_L10E	coord: 71..92 scor
None	No IPR available	PANTHER	PTHR11726	60S RIBOSOMAL PROTEIN L10	coord: 1..179 score: 9.5E
None	No IPR available	PANTHER	PTHR11726:SF15	SUBFAMILY NOT NAMED	coord: 1..179 score: 9.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G000330	Csa2G336100	Cucumber (Chinese Long) v2	cuwcgB126
ClCG02G000330	MELO3C023223	Melon (DHL92) v3.5.1	mewcgB091
ClCG02G000330	Cla007827	Watermelon (97103) v1	wcgwmB206
ClCG02G000330	Cla97C02G026600	Watermelon (97103) v2	wcgwmbB138
ClCG02G000330	Bhi10G001354	Wax gourd	wcgwgoB303
ClCG02G000330	CSPI02G16180	Wild cucumber (PI 183967)	cpiwcgB133
ClCG02G000330	Cucsa.228420	Cucumber (Gy14) v1	cgywcgB401
ClCG02G000330	CmaCh02G006420	Cucurbita maxima (Rimu)	cmawcgB544
ClCG02G000330	CmoCh02G006460	Cucurbita moschata (Rifu)	cmowcgB540
ClCG02G000330	Lsi10G007540	Bottle gourd (USVL1VR-Ls)	lsiwcgB056
ClCG02G000330	Cp4.1LG16g00910	Cucurbita pepo (Zucchini)	cpewcgB268
ClCG02G000330	Cp4.1LG05g10410	Cucurbita pepo (Zucchini)	cpewcgB647
ClCG02G000330	CsGy2G015880	Cucumber (Gy14) v2	cgybwcgB121
ClCG02G000330	MELO3C023223.2	Melon (DHL92) v3.6.1	medwcgB089
ClCG02G000330	Carg24306	Silver-seed gourd	carwcgB0694
ClCG02G000330	CsaV3_2G019510	Cucumber (Chinese Long) v3	cucwcgB139

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G000330	Cucurbita pepo (Zucchini)	cpewcgB274
ClCG02G000330	Silver-seed gourd	carwcgB1030
ClCG02G000330	Cucurbita maxima (Rimu)	cmawcgB482
ClCG02G000330	Cucurbita moschata (Rifu)	cmowcgB480