ClCG01G010240 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G010240
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	F12F1.6
Location	CG_Chr01 : 15346467 .. 15346775 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGATCATTACAATCTCACTCTGTAGTTGCCACCGCGGTGATTCTGATGACCGCCGTCTGGCTGACGAGGGCTTGCTTGGCGGATGGCAAGGTGTGTACCGATTGCATCAGGGACAGGATGCAGCTGGACTGCCCGGCGTGTGCTCCGCCCCTTCGTTGCATGGCACAGTGCCTGTGGGGCGGCGGTTCAAGGTCGAGGTGCGTTAAACGGTGTGATTGGAGCGGTGCGCCGGCGAGCTTGGCAACCTGTAGGCAGTGCATGTCCAGATGCAAGTGCAACTGCAGTTCTTCTTCGAGAGTGTAA

mRNA sequence

ATGGGCAGATCATTACAATCTCACTCTGTAGTTGCCACCGCGGTGATTCTGATGACCGCCGTCTGGCTGACGAGGGCTTGCTTGGCGGATGGCAAGGTGTGTACCGATTGCATCAGGGACAGGATGCAGCTGGACTGCCCGGCGTGTGCTCCGCCCCTTCGTTGCATGGCACAGTGCCTGTGGGGCGGCGGTTCAAGGTCGAGGTGCGTTAAACGGTGTGATTGGAGCGGTGCGCCGGCGAGCTTGGCAACCTGTAGGCAGTGCATGTCCAGATGCAAGTGCAACTGCAGTTCTTCTTCGAGAGTGTAA

Coding sequence (CDS)

ATGGGCAGATCATTACAATCTCACTCTGTAGTTGCCACCGCGGTGATTCTGATGACCGCCGTCTGGCTGACGAGGGCTTGCTTGGCGGATGGCAAGGTGTGTACCGATTGCATCAGGGACAGGATGCAGCTGGACTGCCCGGCGTGTGCTCCGCCCCTTCGTTGCATGGCACAGTGCCTGTGGGGCGGCGGTTCAAGGTCGAGGTGCGTTAAACGGTGTGATTGGAGCGGTGCGCCGGCGAGCTTGGCAACCTGTAGGCAGTGCATGTCCAGATGCAAGTGCAACTGCAGTTCTTCTTCGAGAGTGTAA

Protein sequence

MGRSLQSHSVVATAVILMTAVWLTRACLADGKVCTDCIRDRMQLDCPACAPPLRCMAQCLWGGGSRSRCVKRCDWSGAPASLATCRQCMSRCKCNCSSSSRV

Homology

[Close]

BLAST of ClCG01G010240 vs. TrEMBL
Match: A0A0A0LW71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G186620 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.2e-35
Identity = 71/98 (72.45%), Postives = 80/98 (81.63%), Query Frame = 1


Query: 3   RSLQSHSVVATAVILMTAVWLTRACLADGKVCTDCIRDRMQLDCPACAPPLRCMAQCLWG 62
           RSLQ    +   VILMTAVWLT  C A+GKVC DCIR+RM+ DCPACAPPLRCMAQCLWG
Sbjct: 4   RSLQ----ITEVVILMTAVWLTVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWG 63

Query: 63  GGSRSRCVKRCDWSGAPASLATCRQCMSRCKCNCSSSS 101
           G SRSRCV RCD  GA ASLA+C+QC+++CKC CSSSS
Sbjct: 64  GDSRSRCVNRCDSGGAWASLASCKQCITKCKCRCSSSS 97

[Close]

BLAST of ClCG01G010240 vs. TrEMBL
Match: A5AHI4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033631 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.7e-21
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 1


Query: 11 VATAVILMTAVWL----TRACLADGKVCTDCIRDRMQLDCPACAPPLRCMAQCLWGGGSR 70
          +A  ++L+   WL       C +DG  C DCI ++M+  CP+CAP L CMA+CLWGG S+
Sbjct: 1  MAAVLMLLLVFWLMISPALGCPSDGSECKDCIVNQMRNGCPSCAPVLXCMARCLWGGXSK 60

Query: 71 SRCVKRCDWSGAPASLATCRQCMSRCKCNCSS 99
          S+CVKRCD  G    L+ C++CMSRCKC+C +
Sbjct: 61 SKCVKRCDCYGGKPRLSDCKKCMSRCKCSCEA 92

[Close]

BLAST of ClCG01G010240 vs. TrEMBL
Match: A0A059C9P4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E03949 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.5e-20
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1


Query: 26 ACLADGKVCTDCIRDRMQLDCPACAPPLRCMAQCLWGGGSRSRCVKRCDWSGAPASLATC 85
          AC +DG VC DCI DR+   CP+C P LRCM +CLWGG SR+ C +RCD  G    L+ C
Sbjct: 29 ACPSDGGVCRDCIVDRLNHGCPSCRPVLRCMGRCLWGGSSRANCTRRCDCKGGNPKLSDC 88

Query: 86 RQCMSRCKCNC 97
          ++CMS+CKC+C
Sbjct: 89 KKCMSKCKCSC 99

[Close]

BLAST of ClCG01G010240 vs. TrEMBL
Match: B9HCG2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01110g PE=4 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-19
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 29  ADGKVCTDCIRDRMQLDCPACAPPLRCMAQCLWGGGSRSRCVKRCDWSGAPASLATCRQC 88
           +DG  C DC+ D+M+  CP C P L CMA+CLWGG SRS+C+ RCD  G   +L+ C++C
Sbjct: 46  SDGSGCKDCVLDQMKYGCPTCVPILHCMARCLWGGSSRSKCITRCDCDGGKPTLSDCKKC 105

Query: 89  MSRCKCNCSS 99
           MSRCKC+C++
Sbjct: 106 MSRCKCSCAA 115

[Close]

BLAST of ClCG01G010240 vs. TrEMBL
Match: A0A0D2QZB8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G250100 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-19
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 1


Query: 14  AVILMTAVWLTRACLA--------DGKVCTDCIRDRMQLDCPACAPPLRCMAQCLWGGGS 73
           AV+++   W+    LA        + K C DCI ++M+  CP C P LRCMA+CLWGG S
Sbjct: 14  AVLVILLSWMAFPALACSYNGGGSNNKGCKDCIAEQMKYGCPRCVPLLRCMARCLWGGSS 73

Query: 74  RSRCVKRCDWSGAPASLATCRQCMSRCKCNC 97
           RS+C++RCD  G   +L+ C++CMSRCKC+C
Sbjct: 74  RSKCMRRCDCDGGKPTLSDCKKCMSRCKCSC 104

[Close]

BLAST of ClCG01G010240 vs. TAIR10
Match: AT1G12064.1 (AT1G12064.1 unknown protein)

HSP 1 Score: 84.0 bits (206), Expect = 6.0e-17
Identity = 40/110 (36.36%), Postives = 65/110 (59.09%), Query Frame = 1


Query: 1   MGRSLQSHSVVATAVILMTAVWLTRAC-LADGKVCTD---------CIRDRMQLDCPACA 60
           M ++ +  S+ ++ + L+  + ++RA  +  G VC           C+ ++M+ DCP C 
Sbjct: 1   MKKTYKLQSLFSSLIFLIILLLISRAAAVGSGGVCRHPPSQNSCKTCMAEQMKYDCPKCV 60

Query: 61  PPLRCMAQCLWGGGSRSRCVK--RCDWSGAPASLATCRQCMSRCKCNCSS 99
           P LRCMA+CLWGG ++ +C    RCD +  P SL  C++C+SRCKC+C++
Sbjct: 61  PVLRCMARCLWGGVTQRKCTTTCRCDTAAKP-SLLECKRCVSRCKCSCAA 109

[Close]

BLAST of ClCG01G010240 vs. NCBI nr
Match: gi|659118104|ref|XP_008458948.1| (PREDICTED: uncharacterized protein LOC103498207 [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 2.9e-37
Identity = 71/91 (78.02%), Postives = 81/91 (89.01%), Query Frame = 1


Query: 10  VVATAVILMTAVWLTRACLADGKVCTDCIRDRMQLDCPACAPPLRCMAQCLWGGGSRSRC 69
           ++A AVILMTA+WL  AC ADGKVC+DCIR+RM+ DCPACAPPLRCMAQCLWGGGSRSRC
Sbjct: 7   LIAAAVILMTAIWLAVACPADGKVCSDCIRNRMERDCPACAPPLRCMAQCLWGGGSRSRC 66

Query: 70  VKRCDWSGAPASLATCRQCMSRCKCNCSSSS 101
           V RCD  GA ASLA+C+QC+S+CKC CSSSS
Sbjct: 67  VNRCDSGGAWASLASCKQCISKCKCKCSSSS 97

[Close]

BLAST of ClCG01G010240 vs. NCBI nr
Match: gi|700209961|gb|KGN65057.1| (hypothetical protein Csa_1G186620 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 6.0e-35
Identity = 71/98 (72.45%), Postives = 80/98 (81.63%), Query Frame = 1


Query: 3   RSLQSHSVVATAVILMTAVWLTRACLADGKVCTDCIRDRMQLDCPACAPPLRCMAQCLWG 62
           RSLQ    +   VILMTAVWLT  C A+GKVC DCIR+RM+ DCPACAPPLRCMAQCLWG
Sbjct: 4   RSLQ----ITEVVILMTAVWLTVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWG 63

Query: 63  GGSRSRCVKRCDWSGAPASLATCRQCMSRCKCNCSSSS 101
           G SRSRCV RCD  GA ASLA+C+QC+++CKC CSSSS
Sbjct: 64  GDSRSRCVNRCDSGGAWASLASCKQCITKCKCRCSSSS 97

[Close]

BLAST of ClCG01G010240 vs. NCBI nr
Match: gi|731439325|ref|XP_010646205.1| (PREDICTED: uncharacterized protein LOC104878123 [Vitis vinifera])

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-21
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 1


Query: 9   SVVATAVILMTAVWL----TRACLADGKVCTDCIRDRMQLDCPACAPPLRCMAQCLWGGG 68
           S +A  ++L+   WL       C +DG  C DCI ++M+  CP+CAP LRCMA+CLWGG 
Sbjct: 8   STMAAVLMLLLVFWLMISPALGCPSDGSECKDCIVNQMRNGCPSCAPVLRCMARCLWGGT 67

Query: 69  SRSRCVKRCDWSGAPASLATCRQCMSRCKCNCSS 99
           S+S+CVKRCD  G    L+ C++CMSRCKC+C +
Sbjct: 68  SKSKCVKRCDCYGGKPRLSDCKKCMSRCKCSCEA 101

[Close]

BLAST of ClCG01G010240 vs. NCBI nr
Match: gi|731439323|ref|XP_010646203.1| (PREDICTED: uncharacterized protein LOC104878122 [Vitis vinifera])

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 1


Query: 9   SVVATAVILMTAVWLT----RACLADGKVCTDCIRDRMQLDCPACAPPLRCMAQCLWGGG 68
           S +A  ++L    WLT     +C +DG  C DCI ++M+  CP+CAP L CMA+CLWGG 
Sbjct: 8   STMAAVLMLQLVFWLTISPALSCPSDGSECKDCIVNQMRNVCPSCAPVLSCMARCLWGGA 67

Query: 69  SRSRCVKRCDWSGAPASLATCRQCMSRCKCNCSS 99
           S+S+CVKRCD  G    L+ C++CMSRCKC+C +
Sbjct: 68  SKSKCVKRCDCYGGKPRLSDCKKCMSRCKCSCEA 101

[Close]

BLAST of ClCG01G010240 vs. NCBI nr
Match: gi|147771012|emb|CAN77938.1| (hypothetical protein VITISV_033631 [Vitis vinifera])

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 1


Query: 11 VATAVILMTAVWL----TRACLADGKVCTDCIRDRMQLDCPACAPPLRCMAQCLWGGGSR 70
          +A  ++L+   WL       C +DG  C DCI ++M+  CP+CAP L CMA+CLWGG S+
Sbjct: 1  MAAVLMLLLVFWLMISPALGCPSDGSECKDCIVNQMRNGCPSCAPVLXCMARCLWGGXSK 60

Query: 71 SRCVKRCDWSGAPASLATCRQCMSRCKCNCSS 99
          S+CVKRCD  G    L+ C++CMSRCKC+C +
Sbjct: 61 SKCVKRCDCYGGKPRLSDCKKCMSRCKCSCEA 92

The following BLAST results are available for this feature:

BLAST of ClCG01G010240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW71_CUCSA	4.2e-35	72.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G186620 PE=4 SV=1	[more]
A5AHI4_VITVI	7.7e-21	48.91	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033631 PE=4 SV=1	[more]
A0A059C9P4_EUCGR	8.5e-20	56.34	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E03949 PE=4 SV=1	[more]
B9HCG2_POPTR	1.9e-19	54.29	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01110g PE=4 SV=2	[more]
A0A0D2QZB8_GOSRA	1.9e-19	47.25	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G250100 PE=4 SV=1	[more]

BLAST of ClCG01G010240 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G12064.1	6.0e-17	36.36	unknown protein	[more]

BLAST of ClCG01G010240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118104\|ref\|XP_008458948.1\|	2.9e-37	78.02	PREDICTED: uncharacterized protein LOC103498207 [Cucumis melo]	[more]
gi\|700209961\|gb\|KGN65057.1\|	6.0e-35	72.45	hypothetical protein Csa_1G186620 [Cucumis sativus]	[more]
gi\|731439325\|ref\|XP_010646205.1\|	1.0e-21	50.00	PREDICTED: uncharacterized protein LOC104878123 [Vitis vinifera]	[more]
gi\|731439323\|ref\|XP_010646203.1\|	1.7e-21	50.00	PREDICTED: uncharacterized protein LOC104878122 [Vitis vinifera]	[more]
gi\|147771012\|emb\|CAN77938.1\|	1.1e-20	48.91	hypothetical protein VITISV_033631 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G010240.1	ClCG01G010240.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G010240	MELO3C021682	Melon (DHL92) v3.5.1	mewcgB140
ClCG01G010240	Cla009006	Watermelon (97103) v1	wcgwmB146
ClCG01G010240	Cp4.1LG09g06590	Cucurbita pepo (Zucchini)	cpewcgB030
ClCG01G010240	MELO3C021682.2	Melon (DHL92) v3.6.1	medwcgB132

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G010240	Cucurbita maxima (Rimu)	cmawcgB186
ClCG01G010240	Cucurbita maxima (Rimu)	cmawcgB342
ClCG01G010240	Cucurbita moschata (Rifu)	cmowcgB177
ClCG01G010240	Wild cucumber (PI 183967)	cpiwcgB025
ClCG01G010240	Cucumber (Chinese Long) v2	cuwcgB022
ClCG01G010240	Cucurbita pepo (Zucchini)	cpewcgB451
ClCG01G010240	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G010240	Cucumber (Gy14) v2	cgybwcgB021
ClCG01G010240	Silver-seed gourd	carwcgB1012
ClCG01G010240	Cucumber (Chinese Long) v3	cucwcgB024
ClCG01G010240	Watermelon (97103) v2	wcgwmbB089
ClCG01G010240	Wax gourd	wcgwgoB233
ClCG01G010240	Wax gourd	wcgwgoB238