ClCG01G010000 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G010000
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	cDNA clone:002-156-B04, full insert sequence
Location	CG_Chr01 : 14658206 .. 14658761 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGCGTTGGTGCCCGACTCGGCCGGTCTTCAACTCGCTACGGACCCGCCACCGTCTTCACTGGTCCGGTCAGGAAGTGGAAGAAGAAATGGATCCACGTTGCGCCGTCCACCCCCGCTTCCAACAACCATTCCCATTCTCAGCGGCACACTAACCCCAACAATGTTACCACCAATGCCACTGCCAACGCTACTACCAACGCTTCGCATCTTTTGCTTTACAAGTGGACGCCTATTACACAGAGTCTCAACAATGGCAACGCCGATGAAAAGAACGCCGGCAAAGAGGAGAGCCCGACGGTCACAGAGGAGCCTCCTCGCCGGAAATTTAAATACATACCGGTACCCGCCTTTTTCTTCTGTTTGAATTATCTGGGTTTGTTGAATGTTGAAGTTTTCAATGCATTCCGCTTGCTTTTGTGGTCGAATTTACTGGGCTTTTGGTTTTCTATATTTACTTGAGTGTCTGAGTATACTTGTAGGCAATTGGCAAATGTGTAGGTATGAATGTGGAACTTTGTCATTTCGTGAGAATCTGGAAGCTAAACCTTAG

mRNA sequence

ATGGAGGGCGTTGGTGCCCGACTCGGCCGGTCTTCAACTCGCTACGGACCCGCCACCGTCTTCACTGGTCCGGTCAGGAAGTGGAAGAAGAAATGGATCCACGTTGCGCCGTCCACCCCCGCTTCCAACAACCATTCCCATTCTCAGCGGCACACTAACCCCAACAATGTTACCACCAATGCCACTGCCAACGCTACTACCAACGCTTCGCATCTTTTGCTTTACAAGTGGACGCCTATTACACAGAGTCTCAACAATGGCAACGCCGATGAAAAGAACGCCGGCAAAGAGGAGAGCCCGACGGTCACAGAGGAGCCTCCTCGCCGGAAATTTAAATACATACCGGTACCCGCCTTTTTCTTCTGTTTGAATTATCTGGGCAATTGGCAAATGTGTAGGTATGAATGTGGAACTTTGTCATTTCGTGAGAATCTGGAAGCTAAACCTTAG

Coding sequence (CDS)

ATGGAGGGCGTTGGTGCCCGACTCGGCCGGTCTTCAACTCGCTACGGACCCGCCACCGTCTTCACTGGTCCGGTCAGGAAGTGGAAGAAGAAATGGATCCACGTTGCGCCGTCCACCCCCGCTTCCAACAACCATTCCCATTCTCAGCGGCACACTAACCCCAACAATGTTACCACCAATGCCACTGCCAACGCTACTACCAACGCTTCGCATCTTTTGCTTTACAAGTGGACGCCTATTACACAGAGTCTCAACAATGGCAACGCCGATGAAAAGAACGCCGGCAAAGAGGAGAGCCCGACGGTCACAGAGGAGCCTCCTCGCCGGAAATTTAAATACATACCGGTACCCGCCTTTTTCTTCTGTTTGAATTATCTGGGCAATTGGCAAATGTGTAGGTATGAATGTGGAACTTTGTCATTTCGTGAGAATCTGGAAGCTAAACCTTAG

Protein sequence

MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTPASNNHSHSQRHTNPNNVTTNATANATTNASHLLLYKWTPITQSLNNGNADEKNAGKEESPTVTEEPPRRKFKYIPVPAFFFCLNYLGNWQMCRYECGTLSFRENLEAKP

Homology

[Close]

BLAST of ClCG01G010000 vs. TrEMBL
Match: A0A0A0LT57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G195240 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 7.2e-60
Identity = 116/147 (78.91%), Postives = 126/147 (85.71%), Query Frame = 1


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTPASNNHSHSQRHTNPNNVTTN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPST ASNNHSHSQRHTNPNNVT N
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN 60

Query: 61  ATANATTNASHLLLYKWTPITQSLNNGNADEKNAGKEESPTVTEEPPRRKFKYIPVPAFF 120
           ATAN++TNASHLLL+KWTPITQSLNNGNADEKNAGKE++PTVTEEPPRRKFKY+P     
Sbjct: 61  ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMPA---- 120

Query: 121 FCLNYLGNWQMCRYECGTLSFRENLEA 148
                +G       +CG LS+R+NL A
Sbjct: 121 -----IG-------KCGPLSYRDNLTA 131

[Close]

BLAST of ClCG01G010000 vs. TrEMBL
Match: A0A151T6M5_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_017240 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-34
Identity = 78/120 (65.00%), Postives = 93/120 (77.50%), Query Frame = 1


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTPASN---NHSHSQRHTNPNNV 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKW+HV+PS+ +SN   NH+H+  HT+ N+ 
Sbjct: 10  MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPSSASSNSNTNHNHNHNHTH-NHT 69

Query: 61  TTNATANATTNASHLLLYKWTPITQSLN-NGNADEKNAGKEESPTVTEEPPRRKFKYIPV 117
            T++ A   +NASHLLLYKWTPITQS N   N++     K+  P   EEPPRRKFKY+PV
Sbjct: 70  HTHSHA---SNASHLLLYKWTPITQSHNTTTNSNANGTAKDALPEPPEEPPRRKFKYVPV 125

[Close]

BLAST of ClCG01G010000 vs. TrEMBL
Match: A0A0D2VGN6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G010300 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.0e-34
Identity = 71/117 (60.68%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTPASNNHSHSQRHTNPNNVTT- 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKW+HV+PS   +++++++  H++ N+ TT 
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPSNTGNSSNNNNNNHSHNNHQTTI 60

Query: 61  NATANATTNASHLLLYKWTPITQSLNNGNADEKNAGKEESPTVTEEPPRRKFKYIPV 117
           N T+N   N SHLLL+KWTP++Q+  N N D  N+ K+++    EEPPRRKFKYIP+
Sbjct: 61  NGTSNG-NNGSHLLLFKWTPLSQTQTNNN-DNDNSSKDDAVAAPEEPPRRKFKYIPI 115

[Close]

BLAST of ClCG01G010000 vs. TrEMBL
Match: A0A0B0Q1D6_GOSAR (Protein FAM59A OS=Gossypium arboreum GN=F383_04771 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.0e-34
Identity = 71/117 (60.68%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTPASNNHSHSQRHTNPNNVTT- 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKW+HV+PS   +++++++  H++ N+ TT 
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPSNTGNSSNNNNNNHSHNNHQTTI 60

Query: 61  NATANATTNASHLLLYKWTPITQSLNNGNADEKNAGKEESPTVTEEPPRRKFKYIPV 117
           N T+N   N SHLLL+KWTP++Q+  N N D  N+ K+++    EEPPRRKFKYIP+
Sbjct: 61  NGTSNG-NNGSHLLLFKWTPLSQTQTNNN-DNDNSSKDDAVAAPEEPPRRKFKYIPI 115

[Close]

BLAST of ClCG01G010000 vs. TrEMBL
Match: A0A067JA98_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21148 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.8e-34
Identity = 80/120 (66.67%), Postives = 91/120 (75.83%), Query Frame = 1


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTPASNNHSHSQRHTNPNNVTTN 60
           MEGVGARLGRSSTRYGPATVF GPVRKWKKKW+HV+P    SNN +HSQ H    + T N
Sbjct: 1   MEGVGARLGRSSTRYGPATVFNGPVRKWKKKWVHVSP----SNNTNHSQNH--HLHTTAN 60

Query: 61  ATANATTNASHLLLYKWTPITQS----LNNGNADEKNAGKEESPTVTEEPPRRKFKYIPV 117
           AT N   N SHLLLYKWTP+TQS     NN NAD KN+ K+++  + EEPPRRKFKYIP+
Sbjct: 61  ATTNG-NNGSHLLLYKWTPLTQSNKDAANNSNAD-KNSLKDDALPLPEEPPRRKFKYIPI 112

[Close]

BLAST of ClCG01G010000 vs. TAIR10
Match: AT4G22320.1 (AT4G22320.1 unknown protein)

HSP 1 Score: 142.5 bits (358), Expect = 2.1e-34
Identity = 70/120 (58.33%), Postives = 86/120 (71.67%), Query Frame = 1


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTPASNNHSHSQRHTNPNNVTTN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKW+HV+PS+   NN+S S       +V   
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPSSKKDNNNSSSGSAAAAASVVNG 60

Query: 61  ATANATTNASHLLLYKWTPITQSLNNGNAD---EKNAGKEES-PTVTEEPPRRKFKYIPV 117
            + +  +N SHLLLYKW P++Q+  NGN D   E N+  E++  TV E+PPRR+FKY+P+
Sbjct: 61  GSNSDGSNGSHLLLYKWAPLSQN-GNGNEDGKSESNSPSEDTVATVAEDPPRRRFKYVPI 119

[Close]

BLAST of ClCG01G010000 vs. TAIR10
Match: AT5G55210.1 (AT5G55210.1 unknown protein)

HSP 1 Score: 87.8 bits (216), Expect = 6.1e-18
Identity = 52/119 (43.70%), Postives = 67/119 (56.30%), Query Frame = 1


Query: 1   MEGVGARLGRSSTRY-GPAT--VFTGPVRKWKKKWIHVAPSTPASNNHSHSQRHTNPNNV 60
           MEGVG+RL R+S+RY GPA   VF+G VRKWKKKW+ V+ S+      S S    N NN 
Sbjct: 1   MEGVGSRLSRTSSRYSGPAATAVFSGRVRKWKKKWVRVSTSSVGVFRASKSNGRNNSNN- 60

Query: 61  TTNATANATTNASHLLLYKWTPITQSLNNGNADEKNAGKEESPTVTEEPPRRKFKYIPV 117
                   + +  HLLL+KWTP+T +     A + N   E     TEE P+R+F+Y P+
Sbjct: 61  --------SNSPHHLLLHKWTPLTSA--TVTASDANGSGE-----TEESPKRRFRYAPI 103

[Close]

BLAST of ClCG01G010000 vs. NCBI nr
Match: gi|700209984|gb|KGN65080.1| (hypothetical protein Csa_1G195240 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 1.0e-59
Identity = 116/147 (78.91%), Postives = 126/147 (85.71%), Query Frame = 1


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTPASNNHSHSQRHTNPNNVTTN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPST ASNNHSHSQRHTNPNNVT N
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN 60

Query: 61  ATANATTNASHLLLYKWTPITQSLNNGNADEKNAGKEESPTVTEEPPRRKFKYIPVPAFF 120
           ATAN++TNASHLLL+KWTPITQSLNNGNADEKNAGKE++PTVTEEPPRRKFKY+P     
Sbjct: 61  ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMPA---- 120

Query: 121 FCLNYLGNWQMCRYECGTLSFRENLEA 148
                +G       +CG LS+R+NL A
Sbjct: 121 -----IG-------KCGPLSYRDNLTA 131

[Close]

BLAST of ClCG01G010000 vs. NCBI nr
Match: gi|659118145|ref|XP_008458970.1| (PREDICTED: uncharacterized protein LOC103498224 isoform X2 [Cucumis melo])

HSP 1 Score: 233.8 bits (595), Expect = 1.9e-58
Identity = 108/116 (93.10%), Postives = 113/116 (97.41%), Query Frame = 1


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTPASNNHSHSQRHTNPNNVTTN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPST ASNNHSHSQRHTNPNNV  N
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVAAN 60

Query: 61  ATANATTNASHLLLYKWTPITQSLNNGNADEKNAGKEESPTVTEEPPRRKFKYIPV 117
           ATAN+TTNASHLLL+KWTPITQSLNNGNADEKNAGKE++PTVTEEPPRRKFKYIP+
Sbjct: 61  ATANSTTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYIPI 116

[Close]

BLAST of ClCG01G010000 vs. NCBI nr
Match: gi|659118143|ref|XP_008458968.1| (PREDICTED: uncharacterized protein LOC103498224 isoform X1 [Cucumis melo])

HSP 1 Score: 233.8 bits (595), Expect = 1.9e-58
Identity = 108/116 (93.10%), Postives = 113/116 (97.41%), Query Frame = 1


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTPASNNHSHSQRHTNPNNVTTN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPST ASNNHSHSQRHTNPNNV  N
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVAAN 60

Query: 61  ATANATTNASHLLLYKWTPITQSLNNGNADEKNAGKEESPTVTEEPPRRKFKYIPV 117
           ATAN+TTNASHLLL+KWTPITQSLNNGNADEKNAGKE++PTVTEEPPRRKFKYIP+
Sbjct: 61  ATANSTTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYIPI 116

[Close]

BLAST of ClCG01G010000 vs. NCBI nr
Match: gi|449465421|ref|XP_004150426.1| (PREDICTED: uncharacterized protein LOC101221727 isoform X1 [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 3.3e-58
Identity = 107/116 (92.24%), Postives = 114/116 (98.28%), Query Frame = 1


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTPASNNHSHSQRHTNPNNVTTN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPST ASNNHSHSQRHTNPNNVT N
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN 60

Query: 61  ATANATTNASHLLLYKWTPITQSLNNGNADEKNAGKEESPTVTEEPPRRKFKYIPV 117
           ATAN++TNASHLLL+KWTPITQSLNNGNADEKNAGKE++PTVTEEPPRRKFKY+P+
Sbjct: 61  ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMPI 116

[Close]

BLAST of ClCG01G010000 vs. NCBI nr
Match: gi|778659850|ref|XP_011655175.1| (PREDICTED: uncharacterized protein LOC101221727 isoform X2 [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 3.3e-58
Identity = 107/116 (92.24%), Postives = 114/116 (98.28%), Query Frame = 1


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTPASNNHSHSQRHTNPNNVTTN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPST ASNNHSHSQRHTNPNNVT N
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN 60

Query: 61  ATANATTNASHLLLYKWTPITQSLNNGNADEKNAGKEESPTVTEEPPRRKFKYIPV 117
           ATAN++TNASHLLL+KWTPITQSLNNGNADEKNAGKE++PTVTEEPPRRKFKY+P+
Sbjct: 61  ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMPI 116

The following BLAST results are available for this feature:

BLAST of ClCG01G010000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT57_CUCSA	7.2e-60	78.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G195240 PE=4 SV=1	[more]
A0A151T6M5_CAJCA	1.4e-34	65.00	Uncharacterized protein OS=Cajanus cajan GN=KK1_017240 PE=4 SV=1	[more]
A0A0D2VGN6_GOSRA	4.0e-34	60.68	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G010300 PE=4 SV=1	[more]
A0A0B0Q1D6_GOSAR	4.0e-34	60.68	Protein FAM59A OS=Gossypium arboreum GN=F383_04771 PE=4 SV=1	[more]
A0A067JA98_JATCU	6.8e-34	66.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21148 PE=4 SV=1	[more]

BLAST of ClCG01G010000 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G22320.1	2.1e-34	58.33	unknown protein	[more]
AT5G55210.1	6.1e-18	43.70	unknown protein	[more]

BLAST of ClCG01G010000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209984\|gb\|KGN65080.1\|	1.0e-59	78.91	hypothetical protein Csa_1G195240 [Cucumis sativus]	[more]
gi\|659118145\|ref\|XP_008458970.1\|	1.9e-58	93.10	PREDICTED: uncharacterized protein LOC103498224 isoform X2 [Cucumis melo]	[more]
gi\|659118143\|ref\|XP_008458968.1\|	1.9e-58	93.10	PREDICTED: uncharacterized protein LOC103498224 isoform X1 [Cucumis melo]	[more]
gi\|449465421\|ref\|XP_004150426.1\|	3.3e-58	92.24	PREDICTED: uncharacterized protein LOC101221727 isoform X1 [Cucumis sativus]	[more]
gi\|778659850\|ref\|XP_011655175.1\|	3.3e-58	92.24	PREDICTED: uncharacterized protein LOC101221727 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G010000.1	ClCG01G010000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34572	FAMILY NOT NAMED	coord: 1..116 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G010000	Csa1G195240	Cucumber (Chinese Long) v2	cuwcgB022
ClCG01G010000	MELO3C021699	Melon (DHL92) v3.5.1	mewcgB140
ClCG01G010000	Cla008981	Watermelon (97103) v1	wcgwmB146
ClCG01G010000	Cla97C01G010100	Watermelon (97103) v2	wcgwmbB089
ClCG01G010000	Bhi08G000673	Wax gourd	wcgwgoB233
ClCG01G010000	CSPI01G16180	Wild cucumber (PI 183967)	cpiwcgB025
ClCG01G010000	CmaCh18G005810	Cucurbita maxima (Rimu)	cmawcgB350
ClCG01G010000	CmoCh18G005690	Cucurbita moschata (Rifu)	cmowcgB340
ClCG01G010000	CsGy1G015790	Cucumber (Gy14) v2	cgybwcgB021
ClCG01G010000	MELO3C021699.2	Melon (DHL92) v3.6.1	medwcgB132
ClCG01G010000	CsaV3_1G018430	Cucumber (Chinese Long) v3	cucwcgB024

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G010000	Silver-seed gourd	carwcgB1012
ClCG01G010000	Cucurbita maxima (Rimu)	cmawcgB186
ClCG01G010000	Cucurbita maxima (Rimu)	cmawcgB342
ClCG01G010000	Cucurbita moschata (Rifu)	cmowcgB177
ClCG01G010000	Cucurbita pepo (Zucchini)	cpewcgB451
ClCG01G010000	Bottle gourd (USVL1VR-Ls)	lsiwcgB169