CSPI01G16180 (gene) Wild cucumber (PI 183967)

NameCSPI01G16180
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptioncDNA clone:002-156-B04, full insert sequence
LocationChr1 : 11711548 .. 11712314 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACAAGGAGGAAGGTCGTGGATGGAAACACGGTTTTGAAGAAGCTATCTGTCTTTTAATAAGTCGAAGCCAAAAAGCATTTTAGAGGGAAGGAGATAAGAATTTCCCAATTTTAATTTTCCCCCCGATACGGATCGGACGCCCCACCCTGACGCCAGCGCCACCGATCCGACCGATTGATTGATTGATGGAGGGCGTTGGTGCCCGACTCGGCCGCTCTTCAACTCGCTACGGACCCGCCACCGTCTTCACTGGCCCGGTCAGGAAGTGGAAGAAGAAATGGATCCACGTTGCGCCGTCGACCACCGCTTCCAACAACCATTCCCACTCTCAGCGCCATACTAACCCCAACAATGTTACCGCCAATGCCACTGCCAACTCTTCTACTAACGCTTCGCATCTTTTACTTTTCAAGTGGACGCCTATTACACAGAGTCTCAACAATGGCAACGCCGATGAAAAGAACGCCGGCAAAGAGGACACCCCAACGGTGACAGAGGAGCCTCCTCGCCGAAAATTTAAATACATGCCGGTACCCGCCTTTTTCTTTCATTTGAATTATCTGGGTTTGTTGAATTTTGAAGTTTTAAATGCATTGCTGCAGCTTTGTTGGTCTACATTACTGGGATTTTTAGATTTTCGTGTCTGAGTGTACTTGTAGGCAATTGGCAAATGTGGACCTTTGTCATATCGTGATAATTTGACAGCTTCCTTATCCACGCAGTACGGTGCATATGTCCTATTTAGGCTTCCAGTTGGGGTGTAA

mRNA sequence

ATGGAGGGCGTTGGTGCCCGACTCGGCCGCTCTTCAACTCGCTACGGACCCGCCACCGTCTTCACTGGCCCGGTCAGGAAGTGGAAGAAGAAATGGATCCACGTTGCGCCGTCGACCACCGCTTCCAACAACCATTCCCACTCTCAGCGCCATACTAACCCCAACAATGTTACCGCCAATGCCACTGCCAACTCTTCTACTAACGCTTCGCATCTTTTACTTTTCAAGTGGACGCCTATTACACAGAGTCTCAACAATGGCAACGCCGATGAAAAGAACGCCGGCAAAGAGGACACCCCAACGGTGACAGAGGAGCCTCCTCGCCGAAAATTTAAATACATGCCGGCAATTGGCAAATGTGGACCTTTGTCATATCGTGATAATTTGACAGCTTCCTTATCCACGCAGTACGGTGCATATGTCCTATTTAGGCTTCCAGTTGGGGTGTAA

Coding sequence (CDS)

ATGGAGGGCGTTGGTGCCCGACTCGGCCGCTCTTCAACTCGCTACGGACCCGCCACCGTCTTCACTGGCCCGGTCAGGAAGTGGAAGAAGAAATGGATCCACGTTGCGCCGTCGACCACCGCTTCCAACAACCATTCCCACTCTCAGCGCCATACTAACCCCAACAATGTTACCGCCAATGCCACTGCCAACTCTTCTACTAACGCTTCGCATCTTTTACTTTTCAAGTGGACGCCTATTACACAGAGTCTCAACAATGGCAACGCCGATGAAAAGAACGCCGGCAAAGAGGACACCCCAACGGTGACAGAGGAGCCTCCTCGCCGAAAATTTAAATACATGCCGGCAATTGGCAAATGTGGACCTTTGTCATATCGTGATAATTTGACAGCTTCCTTATCCACGCAGTACGGTGCATATGTCCTATTTAGGCTTCCAGTTGGGGTGTAA
BLAST of CSPI01G16180 vs. TrEMBL
Match: A0A0A0LT57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G195240 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 6.3e-80
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN 60

Query: 61  ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMPAIGKC 120
           ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMPAIGKC
Sbjct: 61  ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMPAIGKC 120

Query: 121 GPLSYRDNLTASLSTQYGAYVLFRLPVGV 150
           GPLSYRDNLTASLSTQYGAYVLFRLPVGV
Sbjct: 121 GPLSYRDNLTASLSTQYGAYVLFRLPVGV 149

BLAST of CSPI01G16180 vs. TrEMBL
Match: A0A0B0NRB8_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_05180 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.9e-32
Identity = 77/118 (65.25%), Postives = 87/118 (73.73%), Query Frame = 1

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTT---ASNNHSHSQRHTNPNNV 60
           MEGVGARLGRSSTRYGP TVFTGPVRKWKKKW+HV+PS T     NN++HSQ H + +N 
Sbjct: 1   MEGVGARLGRSSTRYGPVTVFTGPVRKWKKKWVHVSPSNTGGGGGNNNNHSQNHHSNSNG 60

Query: 61  TANATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMP 116
           T+N       N  HL+LFKWTPITQS NN N    N+ KEDT    EEPPRRKFKY+P
Sbjct: 61  TSN-----GNNGPHLVLFKWTPITQSQNNNNY-TNNSPKEDTVAAPEEPPRRKFKYIP 112

BLAST of CSPI01G16180 vs. TrEMBL
Match: A0A0B0Q1D6_GOSAR (Protein FAM59A OS=Gossypium arboreum GN=F383_04771 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 8.4e-32
Identity = 75/117 (64.10%), Postives = 91/117 (77.78%), Query Frame = 1

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTT--ASNNHSHSQRHTNPNNVT 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKW+HV+PS T  +SNN++++  H N +  T
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPSNTGNSSNNNNNNHSHNN-HQTT 60

Query: 61  ANATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMP 116
            N T+N + N SHLLLFKWTP++Q+  N N D  N+ K+D     EEPPRRKFKY+P
Sbjct: 61  INGTSNGN-NGSHLLLFKWTPLSQTQTNNN-DNDNSSKDDAVAAPEEPPRRKFKYIP 114

BLAST of CSPI01G16180 vs. TrEMBL
Match: A0A0D2VGN6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G010300 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 8.4e-32
Identity = 75/117 (64.10%), Postives = 91/117 (77.78%), Query Frame = 1

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTT--ASNNHSHSQRHTNPNNVT 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKW+HV+PS T  +SNN++++  H N +  T
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPSNTGNSSNNNNNNHSHNN-HQTT 60

Query: 61  ANATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMP 116
            N T+N + N SHLLLFKWTP++Q+  N N D  N+ K+D     EEPPRRKFKY+P
Sbjct: 61  INGTSNGN-NGSHLLLFKWTPLSQTQTNNN-DNDNSSKDDAVAAPEEPPRRKFKYIP 114

BLAST of CSPI01G16180 vs. TrEMBL
Match: A0A0D2UKG0_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_011G010200 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-31
Identity = 75/117 (64.10%), Postives = 90/117 (76.92%), Query Frame = 1

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTT--ASNNHSHSQRHTNPNNVT 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKW+HV+PS T  +SNN++++  H N    T
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPSNTGNSSNNNNNNHSHNN-QQTT 60

Query: 61  ANATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMP 116
            N T+N + N SHLLLFKWTP++Q+  N N D  N+ K+D     EEPPRRKFKY+P
Sbjct: 61  INGTSNGN-NVSHLLLFKWTPLSQTQTNNN-DNDNSSKDDAVAAPEEPPRRKFKYIP 114

BLAST of CSPI01G16180 vs. TAIR10
Match: AT4G22320.1 (AT4G22320.1 unknown protein)

HSP 1 Score: 133.7 bits (335), Expect = 9.7e-32
Identity = 71/119 (59.66%), Postives = 87/119 (73.11%), Query Frame = 1

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKW+HV+PS+   NN+S S       +V   
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPSSKKDNNNSSSGSAAAAASVVNG 60

Query: 61  ATANSSTNASHLLLFKWTPITQSLNNGNAD---EKNAGKEDT-PTVTEEPPRRKFKYMP 116
            + +  +N SHLLL+KW P++Q+  NGN D   E N+  EDT  TV E+PPRR+FKY+P
Sbjct: 61  GSNSDGSNGSHLLLYKWAPLSQN-GNGNEDGKSESNSPSEDTVATVAEDPPRRRFKYVP 118

BLAST of CSPI01G16180 vs. TAIR10
Match: AT5G55210.1 (AT5G55210.1 unknown protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-15
Identity = 53/118 (44.92%), Postives = 67/118 (56.78%), Query Frame = 1

Query: 1   MEGVGARLGRSSTRY-GPAT--VFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNV 60
           MEGVG+RL R+S+RY GPA   VF+G VRKWKKKW+ V+ S+      S S    N NN 
Sbjct: 1   MEGVGSRLSRTSSRYSGPAATAVFSGRVRKWKKKWVRVSTSSVGVFRASKSNGRNNSNN- 60

Query: 61  TANATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMP 116
                   S +  HLLL KWTP+T +     A + N   E     TEE P+R+F+Y P
Sbjct: 61  --------SNSPHHLLLHKWTPLTSA--TVTASDANGSGE-----TEESPKRRFRYAP 102

BLAST of CSPI01G16180 vs. NCBI nr
Match: gi|700209984|gb|KGN65080.1| (hypothetical protein Csa_1G195240 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 9.1e-80
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN 60

Query: 61  ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMPAIGKC 120
           ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMPAIGKC
Sbjct: 61  ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMPAIGKC 120

Query: 121 GPLSYRDNLTASLSTQYGAYVLFRLPVGV 150
           GPLSYRDNLTASLSTQYGAYVLFRLPVGV
Sbjct: 121 GPLSYRDNLTASLSTQYGAYVLFRLPVGV 149

BLAST of CSPI01G16180 vs. NCBI nr
Match: gi|449465421|ref|XP_004150426.1| (PREDICTED: uncharacterized protein LOC101221727 isoform X1 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 1.2e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN 60

Query: 61  ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMP 116
           ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMP
Sbjct: 61  ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMP 115

BLAST of CSPI01G16180 vs. NCBI nr
Match: gi|778659850|ref|XP_011655175.1| (PREDICTED: uncharacterized protein LOC101221727 isoform X2 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 1.2e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN 60

Query: 61  ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMP 116
           ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMP
Sbjct: 61  ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMP 115

BLAST of CSPI01G16180 vs. NCBI nr
Match: gi|659118145|ref|XP_008458970.1| (PREDICTED: uncharacterized protein LOC103498224 isoform X2 [Cucumis melo])

HSP 1 Score: 229.9 bits (585), Expect = 2.8e-57
Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 1

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNV AN
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVAAN 60

Query: 61  ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMP 116
           ATANS+TNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKY+P
Sbjct: 61  ATANSTTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYIP 115

BLAST of CSPI01G16180 vs. NCBI nr
Match: gi|659118143|ref|XP_008458968.1| (PREDICTED: uncharacterized protein LOC103498224 isoform X1 [Cucumis melo])

HSP 1 Score: 229.9 bits (585), Expect = 2.8e-57
Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 1

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVTAN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNV AN
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVAAN 60

Query: 61  ATANSSTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYMP 116
           ATANS+TNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKY+P
Sbjct: 61  ATANSTTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYIP 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LT57_CUCSA6.3e-80100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G195240 PE=4 SV=1[more]
A0A0B0NRB8_GOSAR2.9e-3265.25Uncharacterized protein OS=Gossypium arboreum GN=F383_05180 PE=4 SV=1[more]
A0A0B0Q1D6_GOSAR8.4e-3264.10Protein FAM59A OS=Gossypium arboreum GN=F383_04771 PE=4 SV=1[more]
A0A0D2VGN6_GOSRA8.4e-3264.10Uncharacterized protein OS=Gossypium raimondii GN=B456_011G010300 PE=4 SV=1[more]
A0A0D2UKG0_GOSRA1.1e-3164.10Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_011G010200 PE=... [more]
Match NameE-valueIdentityDescription
AT4G22320.19.7e-3259.66 unknown protein[more]
AT5G55210.11.7e-1544.92 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700209984|gb|KGN65080.1|9.1e-80100.00hypothetical protein Csa_1G195240 [Cucumis sativus][more]
gi|449465421|ref|XP_004150426.1|1.2e-58100.00PREDICTED: uncharacterized protein LOC101221727 isoform X1 [Cucumis sativus][more]
gi|778659850|ref|XP_011655175.1|1.2e-58100.00PREDICTED: uncharacterized protein LOC101221727 isoform X2 [Cucumis sativus][more]
gi|659118145|ref|XP_008458970.1|2.8e-5797.39PREDICTED: uncharacterized protein LOC103498224 isoform X2 [Cucumis melo][more]
gi|659118143|ref|XP_008458968.1|2.8e-5797.39PREDICTED: uncharacterized protein LOC103498224 isoform X1 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G16180.1CSPI01G16180.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34572FAMILY NOT NAMEDcoord: 1..118
score: 8.1