ClCG01G009880 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G009880
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr01 : 14215686 .. 14216431 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTATTTTGGTGATGTTGAATCCTCCCTGTAACTGTGGGTCTAAAGCACGTGCATCTGTAGTTAAGCATGTGCTTTGTTCACTGATTAAGGCAGGAATTAGACTGTCTTTGTTGGCTGGTGCCTTAACAGGTAAGGGTCCTACCAAACTCTTGGCCCACTCCAGCCATTTGCTCTGTTGACTGAGCTAGCTAAGCTTACTATTTTATTCTCTCAATCCCTTTTCTTCTTCTTTATACATAATGATGTTATCCAATTTGAAGATAATATCTTTCTTTATTTTGGAAGCAGTAAACAAATTACTGTTTCCTATGTTCTTAGCTATGATGGATTTGACTTGACCTAATATTATTAGTCTACTGGTGGAGTGGTGAGAATCAAATAGATGATCAGAACTTTTGGGCAAATTATGGGTTTCCTTTTTCCCTGCCTAACCCTTTTGTATCCTAGCTGGTTTCATGATGAAATTAGTGACCAGTGCAGTATCTAATCATGAAAGCTGTACAAATCTGTGAGAGGGGGCCTTGTATCTTATATTTAAGATTTAAAGAACAAATAGCAGAAAGATTATTAGCCTCCCCGGTCTAATCAACCAGCCTTAAGGAGATGGTTTACTAACGTTTTAGGACAACGACATTCTTAACGTTGAAGCAAGAACTAAGCAGATGGTGGATACTTCTTCCCTGCTGTTTTATCAACAGGATATCCCAGAGAAGAGATGCACATTAATGGCTCACGGAGCTAA

mRNA sequence

ATGCCTATTTTGGTGATGTTGAATCCTCCCTGTAACTGTGGGTCTAAAGCACGTGCATCTGTAGTTAAGCATGTGCTTTGTTCACTGATTAAGGCAGGAATTAGACTGTCTTTGTTGGCTGGTGCCTTAACAGCAGATGGTGGATACTTCTTCCCTGCTGTTTTATCAACAGGATATCCCAGAGAAGAGATGCACATTAATGGCTCACGGAGCTAA

Coding sequence (CDS)

ATGCCTATTTTGGTGATGTTGAATCCTCCCTGTAACTGTGGGTCTAAAGCACGTGCATCTGTAGTTAAGCATGTGCTTTGTTCACTGATTAAGGCAGGAATTAGACTGTCTTTGTTGGCTGGTGCCTTAACAGCAGATGGTGGATACTTCTTCCCTGCTGTTTTATCAACAGGATATCCCAGAGAAGAGATGCACATTAATGGCTCACGGAGCTAA

Protein sequence

MPILVMLNPPCNCGSKARASVVKHVLCSLIKAGIRLSLLAGALTADGGYFFPAVLSTGYPREEMHINGSRS

Homology

[Close]

BLAST of ClCG01G009880 vs. TrEMBL
Match: A0A0A0LYG4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699570 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-10
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 6  MLNPPCNCGSKARASVVKHVLCSLIKAGIRLSLLAGALT 45
          MLNPPCNCGSK RASVVKHVLCSLIKA IRL LLAGALT
Sbjct: 1  MLNPPCNCGSKPRASVVKHVLCSLIKARIRLYLLAGALT 39

[Close]

BLAST of ClCG01G009880 vs. NCBI nr
Match: gi|700211732|gb|KGN66828.1| (hypothetical protein Csa_1G699570 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-10
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 1


Query: 6  MLNPPCNCGSKARASVVKHVLCSLIKAGIRLSLLAGALT 45
          MLNPPCNCGSK RASVVKHVLCSLIKA IRL LLAGALT
Sbjct: 1  MLNPPCNCGSKPRASVVKHVLCSLIKARIRLYLLAGALT 39

The following BLAST results are available for this feature:

BLAST of ClCG01G009880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYG4_CUCSA	1.1e-10	92.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699570 PE=4 SV=1	[more]

BLAST of ClCG01G009880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211732\|gb\|KGN66828.1\|	1.6e-10	92.31	hypothetical protein Csa_1G699570 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G009880.1	ClCG01G009880.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G009880	Csa1G699570	Cucumber (Chinese Long) v2	cuwcgB023
ClCG01G009880	CsaV3_1G045900	Cucumber (Chinese Long) v3	cucwcgB025

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G009880	Watermelon (97103) v2	wcgwmbB089
ClCG01G009880	Wax gourd	wcgwgoB233
ClCG01G009880	Cucumber (Gy14) v1	cgywcgB570
ClCG01G009880	Cucurbita maxima (Rimu)	cmawcgB186
ClCG01G009880	Cucurbita maxima (Rimu)	cmawcgB342
ClCG01G009880	Cucurbita moschata (Rifu)	cmowcgB177
ClCG01G009880	Cucurbita moschata (Rifu)	cmowcgB340
ClCG01G009880	Wild cucumber (PI 183967)	cpiwcgB026
ClCG01G009880	Melon (DHL92) v3.5.1	mewcgB140
ClCG01G009880	Watermelon (97103) v1	wcgwmB157
ClCG01G009880	Cucurbita pepo (Zucchini)	cpewcgB451
ClCG01G009880	Cucurbita pepo (Zucchini)	cpewcgB496
ClCG01G009880	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G009880	Cucumber (Gy14) v2	cgybwcgB022
ClCG01G009880	Melon (DHL92) v3.6.1	medwcgB132
ClCG01G009880	Silver-seed gourd	carwcgB0218