ClCG01G003280 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G003280
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	MADS box transcription factor
Location	CG_Chr01 : 3356400 .. 3359940 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGTCTGTTTCAGTATGAACAAGACAATTGATCGCTATCAGAACAGAACCAAAGATTTGATGTCAAGCAACAACACAGTTGAAGATGTGCAGGTTGGTTGTTCTTCAAACATACTGATGCGTTGCTTTTTAAGTAGAGAAAGTGCAAGAGAAACATATACTTGTTTGGTTTTTTCAAACGGAAGATTTAAGATCTCGTTTGATAACTATTTTTTTTTTTTAAAAAATTGTATTTGTTTTCTCATAATTTCTTAGTTCTAATTACAAATAACAAGTTTTTAAAAAATTATAAATTTGTTGAATTTTCAAAACTTAACTTGAATTTTGCAAACATTTCTAAAAGGTAGATAATAAAACAAAAAAAATTATAGGAAGAAGTAAGGTTCATACTAGTACTTTTCAAGAACCAAAAACTAAAGGAAATATTTTGAATTCATAGCAAATTTCTAAAAAGAAAAACAAATTTTTAAAAACTGATTCTTTTAGAAAATACAAGTGAAAAATACATATATATCCCTATAAAGAAGGAAGTGGTATTTACAAAGCTTGATTTTCACATACCAATAACTAAATGGTTATGAAAGATTTCTCTTTCTTTTTTTCTCATTTTTCATTTTTCTGTCTTTTCCGTCCTTTAATTTCTTCCTATAAAAAGAGAAGTTACTGGAGGAGGCCACTACAACGTAGCTAATTAGTTCTACTCCATTAGATATATGAAAGAGAAATTACAAAGATATATGTATTTCAAAATATGAATCCAATAGTTGTTAGAGGTCATGTAGATTTTTGGACATATATCCAATGGTTATAATGAAACAATTTCTAGCGGTTTCATTCAATAACTTTTTCATTAGAAGTAAAAATTTGGAATTTTTTCATACATTTTCTCAAGATCTATTCAATATGTATCACCTGTTTGATACATTTAGGTTTGGAGGTAGTTTTGGTTCTTGAATTTCTATGAGTTTTCTATTTTTAGAAAGTTCAATTTTAGTTCTTACATTTTCACCCACTTTCTACTTTTGGTCATTTAACTTTAAATCACAATTTTACTATACTAATGTTTATGAAGTTTCATATTTATATGGTAAGTTCATGTGTATTTTTCACCCATTCTGCCCTTTATGTTTGATTTGTGTTTGAATAATCTGAACTGATGAGTTTGTTTGGGATTGAAAGTTGGAGAAGGAATATGACTCCTTTAGCATGACTAAGAAGTTAGAGCACCTTGAAGTTTGTAAAAGGTTTGAGATTATTTTTTATGAACACAAAAAAAAAACTTATTTCTCTATCTTCTTATATATTAAGGGCATGATTTTGGGAGTGGTTTCAAAATCATTTTTGTCATGGTTAGAATTGCTTTAAACATGTATTTAATCATTCAAATTCAAATTTATTGCTGGATCAAAGTGATTTTAAACATGACAAAAGTGAGAATCACTTTCAACAACATGCCCTAATTTTCACAAACACCTCAACTCAATACTGTTTTGAAATAGTACAGAAAACTGTTGGGAGATGGCTTGGATTTGTGTTCCATTGATGAGTTGCAGCAGCTTGAAAGGCAACTTGAAAGAAGCTTAAGCAGAATTAGGTCAAGAAAGGTACATTATATACATTCATAATTCCTCTCTTTGATTTTAATTTAATTGCCTCTTTATAAAAATTTCATATTTAGATTTGTTATTATGTATCACTGTCATATATTATTATTGTCAATTCTCAGTATCAAATGCTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGTAATTTTGTTTCACTTACTAACTTTCTTGTATGACTAATTGCTTGTTATTGTAATATTTATATAATAATGGTTAAATCTTTTACTAATATTATTTTTTTTGATAAACATAAGCAAGAATAAGAAAGTAAATAACAATGTTCTTTTTGTTAGAGGTGTGGTTGTTGATTGCAATTTTTTTTAATTTGGTATAGGAGAAAATGTTGCTGGAAGAAAATGCAGCACTGCAGATTAAGGTTATGCAATCTTCTTTTCTTTTCATTATGTTAATTTCTTTTTTTGTGAATACTTAAACTTGATCACAACCTAATTAGTGAAATATGTTATTTTCACTAATTGAAAGAAAAAAAAGAAAAAAAAGGAGAGAGAGAGAGAGAAGAAAAAAACAAAAGAAGTTGACTTGAAAAACCAGAGATAAATTCCTTTCTAGTAAACCTAAGGACCATTCTCTCTCTCTTTCTTTAAGAAATTTCATTATTTTCTTTTTTTAATTTCCAAAATATGAATAGAATCTACTACGTTGGACTCGTAGAATTGCAACCCGATTCTATTTGATGACCATTTAGTTAACTAGAAAAGAAAGTTCTTAAAAAACATGTTTTTGTTTTTAGAATTTGGATTATGAGTTCAAATGTTTTCTTAGGAAAGATAAAAACTATTGAAAATAAATGGTAAGAAAACAAGCACAAATTTCAAAAACCAAATGGTTATATAAGAAACTTAATTTATAGGGTTTGATTTGTTTGAATTTTTAGAGTTGTGCCTAATATATATAGGTCTTTAAGTTTAAAAAAAGTTTACAATATTACGTGATCTTATAGATGTTTGGAACTTTAAAAAGTATGTTATAGGTCTTTGAACTACCTCAATAGATCCTCAAAATTCCAAACTTTTCTTGTCCCTACTAATCATTCACGCCTCTGTTTAAATTTCAAATACTTAGGTCCTGTTTTGTAATAATTTCATTTTTTTTTCGGTTTTTGAAAATTAAATCTATTTTTTCAATTTCTTATCATGATTTCCATCTTTCTTAAATACAAAAGTTGAATTTCTAGCCAAATTCCAAACTCAAAAACAAGTTCTTAAAAACTCTTTTTCTAATTTTCAAAATTTGGCTTAAGTTTTGAAAACATTGGTAAAAGGTAGATAGCAAGTCAAAAAATTTAGAGGTGGAAGGAGTCTAACTTTACAGACTTAATTTTGAAAAACAAAAAACCATAAACCAAATGTTTAGCAAACAAAGTCCTAATTATTTGACCGTTTATTAAATCTACAGAGCCATTAGATACAACGGTAAATTTAAAGGCCTACTCAACGCCCTATAAAGTCTAGAGTTTGATTAAACATAACACTCAAAGTTGAGGATAAAATAGTATCTTTGTCTAACATCAACTTTTTCCCATTTACAAGTCCAAATCCATATGAATGCTAACAGTAACAATAAAAGGCCTAATTTTTTTTTCATGGGAATTATTTTCAGGTTAGTACTGAGTCATCAAGAAAACAAGAAAGCAATCAAAGATCAGAATCATCAAATCGTCAAGAGATAATGGATGTGGAAACTGAACTATTCATAGGACCACCAGAGAGAAGAAGCAACAATAATAATGGTTTCCTGTAGAGTTTTCATCAACCTCCTTAACAACAGAAGCCTTGTTCCAAAATCCCTTGAAAGATGCCAGAAAATAATATTACCAAAAGTAAAAAAAAAAAGGTGAGTTTTTTACATGCAGCATTTATTTTTAACACCAAAAGGTGAAACCCAACATGACCC

mRNA sequence

GTTGTCTGTTTCAGTATGAACAAGACAATTGATCGCTATCAGAACAGAACCAAAGATTTGATGTCAAGCAACAACACAGTTGAAGATGTGCAGTACAGAAAACTGTTGGGAGATGGCTTGGATTTGTGTTCCATTGATGAGTTGCAGCAGCTTGAAAGGCAACTTGAAAGAAGCTTAAGCAGAATTAGGTCAAGAAAGTATCAAATGCTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCACTGCAGATTAAGGTTAGTACTGAGTCATCAAGAAAACAAGAAAGCAATCAAAGATCAGAATCATCAAATCGTCAAGAGATAATGGATGTGGAAACTGAACTATTCATAGGACCACCAGAGAGAAGAAGCAACAATAATAATGGTTTCCTGTAGAGTTTTCATCAACCTCCTTAACAACAGAAGCCTTGTTCCAAAATCCCTTGAAAGATGCCAGAAAATAATATTACCAAAAGTAAAAAAAAAAAGGTGAGTTTTTTACATGCAGCATTTATTTTTAACACCAAAAGGTGAAACCCAACATGACCC

Coding sequence (CDS)

ATGAACAAGACAATTGATCGCTATCAGAACAGAACCAAAGATTTGATGTCAAGCAACAACACAGTTGAAGATGTGCAGTACAGAAAACTGTTGGGAGATGGCTTGGATTTGTGTTCCATTGATGAGTTGCAGCAGCTTGAAAGGCAACTTGAAAGAAGCTTAAGCAGAATTAGGTCAAGAAAGTATCAAATGCTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCACTGCAGATTAAGGTTAGTACTGAGTCATCAAGAAAACAAGAAAGCAATCAAAGATCAGAATCATCAAATCGTCAAGAGATAATGGATGTGGAAACTGAACTATTCATAGGACCACCAGAGAGAAGAAGCAACAATAATAATGGTTTCCTGTAG

Protein sequence

MNKTIDRYQNRTKDLMSSNNTVEDVQYRKLLGDGLDLCSIDELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTESSRKQESNQRSESSNRQEIMDVETELFIGPPERRSNNNNGFL

Homology

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BLAST of ClCG01G003280 vs. Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-24
Identity = 66/148 (44.59%), Postives = 90/148 (60.81%), Query Frame = 1


Query: 4   TIDRYQNRTKDLMSSNNTVEDVQY-------------------RKLLGDGLDLCSIDELQ 63
           TI+RYQ R K++ +++   ++ Q                    RKLLG+G+D CSI+ELQ
Sbjct: 65  TIERYQRRIKEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQ 124

Query: 64  QLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIK---VSTESSRKQESN 123
           QLE QL+RSLSRIR++KYQ+L+EEI KLK EE+ L++EN  L+ K   + T +    +S 
Sbjct: 125 QLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGTATIASSQST 184

Query: 124 QRSESSNRQEIMDVETELFIGPPERRSN 130
             S   N  + M+VET LFIGPPE R +
Sbjct: 185 LSSSEVNIDDNMEVETGLFIGPPETRQS 212

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BLAST of ClCG01G003280 vs. Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-21
Identity = 62/148 (41.89%), Postives = 84/148 (56.76%), Query Frame = 1


Query: 3   KTIDRYQNRTKDLMSSNNTVEDVQY-------------------RKLLGDGLDLCSIDEL 62
           KT++RYQ R +DL S++   ++ Q                    RK++G+GLD  SI+EL
Sbjct: 65  KTVERYQKRIQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEEL 124

Query: 63  QQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTES----SRKQE 122
           QQLE QL+RSL +IR++KYQ+L+EE  KLKE+E+ L+ EN  L  K   +      R   
Sbjct: 125 QQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGRGIIGRISS 184

Query: 123 SNQRSESSNRQEIMDVETELFIGPPERR 128
           S+  SE       M+V T+LFIGPPE R
Sbjct: 185 SSSTSELDIDDNEMEVVTDLFIGPPETR 212

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BLAST of ClCG01G003280 vs. Swiss-Prot
Match: AGL42_ARATH (MADS-box protein AGL42 OS=Arabidopsis thaliana GN=AGL42 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-19
Identity = 57/147 (38.78%), Postives = 82/147 (55.78%), Query Frame = 1


Query: 1   MNKTIDRYQNRTKDLMSSNNTVE--------------------DVQYRKLLGDGLDLCSI 60
           M KTI+RY+  TKD  +SN+  +                    +   RKLLG G+  CS+
Sbjct: 62  MQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCSL 121

Query: 61  DELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTESSRKQES 120
           +ELQ+++ QL+RSL ++R RK Q+ KE++ KLK +EK LLEEN  L  K      R   +
Sbjct: 122 EELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVINPWRGSST 181

Query: 121 NQRSESSNRQEI-MDVETELFIGPPER 127
           +Q+ E     ++ ++VET+LFIG P R
Sbjct: 182 DQQQEKYKVIDLNLEVETDLFIGLPNR 208

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BLAST of ClCG01G003280 vs. Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-18
Identity = 60/149 (40.27%), Postives = 83/149 (55.70%), Query Frame = 1


Query: 1   MNKTIDRYQNRTKDLMS----SNNTVEDVQY----------------RKLLGDGLDLCSI 60
           M  TIDRY   TKD +S    S   ++ ++Y                RKLLG+G+  CSI
Sbjct: 62  MQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSI 121

Query: 61  DELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTE-----SS 120
           +ELQQ+E+QLE+S+  IR+RK Q+ KE+I +LK++EK L  EN  L  K  +      S+
Sbjct: 122 EELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVWSN 181

Query: 121 RKQESNQRSESSNRQEIMDVETELFIGPP 125
           + QES  R +  +     +VET+LFIG P
Sbjct: 182 KNQESTGRGDEESSPS-SEVETQLFIGLP 209

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BLAST of ClCG01G003280 vs. Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.4e-17
Identity = 55/150 (36.67%), Postives = 80/150 (53.33%), Query Frame = 1


Query: 3   KTIDRYQNRTKDLMSSNNTVEDVQY-------------------RKLLGDGLDLCSIDEL 62
           KTI+RY+  TK+ + +    +D++                    RKLLG+ LD CSI+EL
Sbjct: 64  KTIERYRTYTKENIGNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEEL 123

Query: 63  QQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTE-------SSR 122
             LE +LERSL  IR RK ++L+E++ KL+E+E  L ++N  L+ K   +       + R
Sbjct: 124 HSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQPPLSAPLTVR 183

Query: 123 KQESNQRSESSNRQEIMDVETELFIGPPER 127
            ++ N     +   + MDVETELFIG P R
Sbjct: 184 AEDENPDRNINTTNDNMDVETELFIGLPGR 213

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BLAST of ClCG01G003280 vs. TrEMBL
Match: A0A0A0KP14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G156170 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 9.8e-56
Identity = 122/153 (79.74%), Postives = 129/153 (84.31%), Query Frame = 1


Query: 1   MNKTIDRYQNRTKDLMSSNNT-VEDVQY--------------------RKLLGDGLDLCS 60
           MNKTIDRYQNRTKDLMSSN+T +EDVQ                     RKLLGDGLDLCS
Sbjct: 7   MNKTIDRYQNRTKDLMSSNSTAIEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLCS 66

Query: 61  IDELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTESSRKQE 120
           IDELQQLERQLERSLS+IRSRKYQMLK+EIMKLKEEEKMLLEENAALQIKV +ESS+KQE
Sbjct: 67  IDELQQLERQLERSLSKIRSRKYQMLKDEIMKLKEEEKMLLEENAALQIKVISESSKKQE 126

Query: 121 SNQRSESSNRQEIMDVETELFIGPPERRSNNNN 133
           SNQRSESSN +EIMDVETELFIGPPERRSNNNN
Sbjct: 127 SNQRSESSNHEEIMDVETELFIGPPERRSNNNN 159

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BLAST of ClCG01G003280 vs. TrEMBL
Match: A0A023JBN5_9ROSI (MADS-box transcription factor (Fragment) OS=Pera bumeliifolia PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.3e-27
Identity = 77/149 (51.68%), Postives = 97/149 (65.10%), Query Frame = 1


Query: 1   MNKTIDRYQNRTKDLMSSNNTVED-VQY-------------------RKLLGDGLDLCSI 60
           +NKTI+RYQ +TKD   S+ T +D +QY                   RK+LGDGL+ CSI
Sbjct: 39  INKTIERYQKKTKDQGISSKTSQDNMQYMKEDTLSMAKKIELLEVSKRKMLGDGLEPCSI 98

Query: 61  DELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTES-SRKQE 120
           DELQQLE QLERSL+RIR RK Q+ +E+I KLKEEEK+LLEEN  L+ K   +  S    
Sbjct: 99  DELQQLENQLERSLTRIRLRKNQLFREQIEKLKEEEKILLEENRKLRDKCGMKPISDISP 158

Query: 121 SNQRSESSNRQEIMDVETELFIGPPERRS 129
            N++      +E M+VETELFIGPPERR+
Sbjct: 159 RNEQIAVDRERESMEVETELFIGPPERRN 187

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BLAST of ClCG01G003280 vs. TrEMBL
Match: A0A067FBV6_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0283631mg PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-26
Identity = 76/148 (51.35%), Postives = 96/148 (64.86%), Query Frame = 1


Query: 1   MNKTIDRYQNRTKDLMSSNNTVED--------------------VQYRKLLGDGLDLCSI 60
           +NKTI+RYQ +TKD+  ++  VED                    V  RKLLGDGL+ C+I
Sbjct: 1   INKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTI 60

Query: 61  DELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTESSRKQES 120
           DELQQLE QLERSLSRIR+RK Q+ +E+I KLKE+EK+L+EEN  L         R+Q  
Sbjct: 61  DELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKL---------REQCG 120

Query: 121 NQRSESSNRQEI-MDVETELFIGPPERR 128
            Q  ++S  QE+ MDVET+L IGPPERR
Sbjct: 121 MQPRQASEEQEVYMDVETQLSIGPPERR 139

[Close]

BLAST of ClCG01G003280 vs. TrEMBL
Match: C3PTE7_POPTO (MADS box transcription factor OS=Populus tomentosa GN=MADS3 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.1e-25
Identity = 72/147 (48.98%), Postives = 93/147 (63.27%), Query Frame = 1


Query: 1   MNKTIDRYQNRTKDLMSSNNTVED--------------------VQYRKLLGDGLDLCSI 60
           MN+TI+RYQ R KD+  S+  V+D                    V  RKLLGDGL+ CSI
Sbjct: 62  MNRTIERYQKRAKDVGISSRMVKDNMQPVKEDAFTLAKKIDILEVSKRKLLGDGLEQCSI 121

Query: 61  DELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTESSRKQES 120
           D+LQQLE QLERSL+RIR+RK Q+ +E+I KLK EEK+L+EEN  L+ K   +    Q +
Sbjct: 122 DDLQQLENQLERSLTRIRARKNQLFREQIEKLKGEEKILMEENTKLREKCGMQPLDLQAT 181

Query: 121 NQRSESSNRQEIMDVETELFIGPPERR 128
                  +RQ I++VETELFIGPP+ R
Sbjct: 182 KTPQILQDRQ-IIEVETELFIGPPDSR 207

[Close]

BLAST of ClCG01G003280 vs. TrEMBL
Match: A0A067F8G6_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0283631mg PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.2e-25
Identity = 76/156 (48.72%), Postives = 97/156 (62.18%), Query Frame = 1


Query: 1   MNKTIDRYQNRTKDLMSSNNTVED--------------------VQYRKLLGDGLDLCSI 60
           +NKTI+RYQ +TKD+  ++  VED                    V  RKLLGDGL+ C+I
Sbjct: 1   INKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTI 60

Query: 61  DELQQLERQLERSLSRIRSRKY--------QMLKEEIMKLKEEEKMLLEENAALQIKVST 120
           DELQQLE QLERSLSRIR+RK+        Q+ +E+I KLKE+EK+L+EEN  L      
Sbjct: 61  DELQQLENQLERSLSRIRARKFRNLVFSQNQLFREQIEKLKEKEKILIEENTKL------ 120

Query: 121 ESSRKQESNQRSESSNRQEI-MDVETELFIGPPERR 128
              R+Q   Q  ++S  QE+ MDVET+L IGPPERR
Sbjct: 121 ---REQCGMQPRQASEEQEVYMDVETQLSIGPPERR 147

[Close]

BLAST of ClCG01G003280 vs. TAIR10
Match: AT4G22950.1 (AT4G22950.1 AGAMOUS-like 19)

HSP 1 Score: 113.6 bits (283), Expect = 9.4e-26
Identity = 66/148 (44.59%), Postives = 90/148 (60.81%), Query Frame = 1


Query: 4   TIDRYQNRTKDLMSSNNTVEDVQY-------------------RKLLGDGLDLCSIDELQ 63
           TI+RYQ R K++ +++   ++ Q                    RKLLG+G+D CSI+ELQ
Sbjct: 65  TIERYQRRIKEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQ 124

Query: 64  QLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIK---VSTESSRKQESN 123
           QLE QL+RSLSRIR++KYQ+L+EEI KLK EE+ L++EN  L+ K   + T +    +S 
Sbjct: 125 QLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGTATIASSQST 184

Query: 124 QRSESSNRQEIMDVETELFIGPPERRSN 130
             S   N  + M+VET LFIGPPE R +
Sbjct: 185 LSSSEVNIDDNMEVETGLFIGPPETRQS 212

[Close]

BLAST of ClCG01G003280 vs. TAIR10
Match: AT4G11880.1 (AT4G11880.1 AGAMOUS-like 14)

HSP 1 Score: 104.0 bits (258), Expect = 7.4e-23
Identity = 62/148 (41.89%), Postives = 84/148 (56.76%), Query Frame = 1


Query: 3   KTIDRYQNRTKDLMSSNNTVEDVQY-------------------RKLLGDGLDLCSIDEL 62
           KT++RYQ R +DL S++   ++ Q                    RK++G+GLD  SI+EL
Sbjct: 65  KTVERYQKRIQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEEL 124

Query: 63  QQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTES----SRKQE 122
           QQLE QL+RSL +IR++KYQ+L+EE  KLKE+E+ L+ EN  L  K   +      R   
Sbjct: 125 QQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGRGIIGRISS 184

Query: 123 SNQRSESSNRQEIMDVETELFIGPPERR 128
           S+  SE       M+V T+LFIGPPE R
Sbjct: 185 SSSTSELDIDDNEMEVVTDLFIGPPETR 212

[Close]

BLAST of ClCG01G003280 vs. TAIR10
Match: AT5G62165.1 (AT5G62165.1 AGAMOUS-like 42)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-20
Identity = 57/147 (38.78%), Postives = 82/147 (55.78%), Query Frame = 1


Query: 1   MNKTIDRYQNRTKDLMSSNNTVE--------------------DVQYRKLLGDGLDLCSI 60
           M KTI+RY+  TKD  +SN+  +                    +   RKLLG G+  CS+
Sbjct: 62  MQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCSL 121

Query: 61  DELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTESSRKQES 120
           +ELQ+++ QL+RSL ++R RK Q+ KE++ KLK +EK LLEEN  L  K      R   +
Sbjct: 122 EELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVINPWRGSST 181

Query: 121 NQRSESSNRQEI-MDVETELFIGPPER 127
           +Q+ E     ++ ++VET+LFIG P R
Sbjct: 182 DQQQEKYKVIDLNLEVETDLFIGLPNR 208

[Close]

BLAST of ClCG01G003280 vs. TAIR10
Match: AT2G45660.1 (AT2G45660.1 AGAMOUS-like 20)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-19
Identity = 60/149 (40.27%), Postives = 83/149 (55.70%), Query Frame = 1


Query: 1   MNKTIDRYQNRTKDLMS----SNNTVEDVQY----------------RKLLGDGLDLCSI 60
           M  TIDRY   TKD +S    S   ++ ++Y                RKLLG+G+  CSI
Sbjct: 62  MQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSI 121

Query: 61  DELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTE-----SS 120
           +ELQQ+E+QLE+S+  IR+RK Q+ KE+I +LK++EK L  EN  L  K  +      S+
Sbjct: 122 EELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVWSN 181

Query: 121 RKQESNQRSESSNRQEIMDVETELFIGPP 125
           + QES  R +  +     +VET+LFIG P
Sbjct: 182 KNQESTGRGDEESSPS-SEVETQLFIGLP 209

[Close]

BLAST of ClCG01G003280 vs. TAIR10
Match: AT5G51870.3 (AT5G51870.3 AGAMOUS-like 71)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-14
Identity = 46/135 (34.07%), Postives = 70/135 (51.85%), Query Frame = 1


Query: 5   IDRYQNRTK---DLMSSNNTVEDVQYRKLLGDGLDLCSIDELQQLERQLERSLSRIRSRK 64
           ++RY    K   D M     + +V +RKLLG GLD CS+ ELQ+++ Q+E+SL  +RSRK
Sbjct: 84  VERYLQELKMEIDRMVKKIDLLEVHHRKLLGQGLDSCSVTELQEIDTQIEKSLRIVRSRK 143

Query: 65  YQMLKEEIMKLKEEEKMLLEENAALQIKVSTESSRKQ---------ESNQRSESSNRQEI 124
            ++  +++ KLKE+E+ LL E   L  + + E   +          +          +  
Sbjct: 144 AELYADQLKKLKEKERELLNERKRLLEEQNRERLMRPVVPATLQICDKGNTEGGHRTKHS 203

Query: 125 MDVETELFIGPPERR 128
            +VET+LFIG P  R
Sbjct: 204 SEVETDLFIGLPVTR 218

[Close]

BLAST of ClCG01G003280 vs. NCBI nr
Match: gi|778699809|ref|XP_011654776.1| (PREDICTED: agamous-like MADS-box protein AGL19 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.4e-55
Identity = 122/153 (79.74%), Postives = 129/153 (84.31%), Query Frame = 1


Query: 1   MNKTIDRYQNRTKDLMSSNNT-VEDVQY--------------------RKLLGDGLDLCS 60
           MNKTIDRYQNRTKDLMSSN+T +EDVQ                     RKLLGDGLDLCS
Sbjct: 62  MNKTIDRYQNRTKDLMSSNSTAIEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLCS 121

Query: 61  IDELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTESSRKQE 120
           IDELQQLERQLERSLS+IRSRKYQMLK+EIMKLKEEEKMLLEENAALQIKV +ESS+KQE
Sbjct: 122 IDELQQLERQLERSLSKIRSRKYQMLKDEIMKLKEEEKMLLEENAALQIKVISESSKKQE 181

Query: 121 SNQRSESSNRQEIMDVETELFIGPPERRSNNNN 133
           SNQRSESSN +EIMDVETELFIGPPERRSNNNN
Sbjct: 182 SNQRSESSNHEEIMDVETELFIGPPERRSNNNN 214

[Close]

BLAST of ClCG01G003280 vs. NCBI nr
Match: gi|700194980|gb|KGN50157.1| (hypothetical protein Csa_5G156170 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.4e-55
Identity = 122/153 (79.74%), Postives = 129/153 (84.31%), Query Frame = 1


Query: 1   MNKTIDRYQNRTKDLMSSNNT-VEDVQY--------------------RKLLGDGLDLCS 60
           MNKTIDRYQNRTKDLMSSN+T +EDVQ                     RKLLGDGLDLCS
Sbjct: 7   MNKTIDRYQNRTKDLMSSNSTAIEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLCS 66

Query: 61  IDELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTESSRKQE 120
           IDELQQLERQLERSLS+IRSRKYQMLK+EIMKLKEEEKMLLEENAALQIKV +ESS+KQE
Sbjct: 67  IDELQQLERQLERSLSKIRSRKYQMLKDEIMKLKEEEKMLLEENAALQIKVISESSKKQE 126

Query: 121 SNQRSESSNRQEIMDVETELFIGPPERRSNNNN 133
           SNQRSESSN +EIMDVETELFIGPPERRSNNNN
Sbjct: 127 SNQRSESSNHEEIMDVETELFIGPPERRSNNNN 159

[Close]

BLAST of ClCG01G003280 vs. NCBI nr
Match: gi|659073672|ref|XP_008437190.1| (PREDICTED: agamous-like MADS-box protein AGL19 [Cucumis melo])

HSP 1 Score: 217.6 bits (553), Expect = 1.3e-53
Identity = 119/153 (77.78%), Postives = 126/153 (82.35%), Query Frame = 1


Query: 1   MNKTIDRYQNRTKDLMSSNNTV-EDVQY--------------------RKLLGDGLDLCS 60
           MNKTIDRYQNRTKDLMSSN+T  EDVQ                     RKLLGDGLDLCS
Sbjct: 62  MNKTIDRYQNRTKDLMSSNSTATEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLCS 121

Query: 61  IDELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTESSRKQE 120
           IDELQQLERQLERSLS+IRSRKYQMLK+EI KLKEEEK LLEENAALQIKV +ESS+KQ+
Sbjct: 122 IDELQQLERQLERSLSKIRSRKYQMLKDEITKLKEEEKKLLEENAALQIKVRSESSKKQD 181

Query: 121 SNQRSESSNRQEIMDVETELFIGPPERRSNNNN 133
           SNQRSESSN +EIMDVETELFIGPPERRSNNNN
Sbjct: 182 SNQRSESSNHEEIMDVETELFIGPPERRSNNNN 214

[Close]

BLAST of ClCG01G003280 vs. NCBI nr
Match: gi|576236071|gb|AHH28300.1| (MADS-box transcription factor, partial [Pera bumeliifolia])

HSP 1 Score: 129.0 bits (323), Expect = 6.1e-27
Identity = 77/149 (51.68%), Postives = 97/149 (65.10%), Query Frame = 1


Query: 1   MNKTIDRYQNRTKDLMSSNNTVED-VQY-------------------RKLLGDGLDLCSI 60
           +NKTI+RYQ +TKD   S+ T +D +QY                   RK+LGDGL+ CSI
Sbjct: 39  INKTIERYQKKTKDQGISSKTSQDNMQYMKEDTLSMAKKIELLEVSKRKMLGDGLEPCSI 98

Query: 61  DELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTES-SRKQE 120
           DELQQLE QLERSL+RIR RK Q+ +E+I KLKEEEK+LLEEN  L+ K   +  S    
Sbjct: 99  DELQQLENQLERSLTRIRLRKNQLFREQIEKLKEEEKILLEENRKLRDKCGMKPISDISP 158

Query: 121 SNQRSESSNRQEIMDVETELFIGPPERRS 129
            N++      +E M+VETELFIGPPERR+
Sbjct: 159 RNEQIAVDRERESMEVETELFIGPPERRN 187

[Close]

BLAST of ClCG01G003280 vs. NCBI nr
Match: gi|641844737|gb|KDO63629.1| (hypothetical protein CISIN_1g0283631mg, partial [Citrus sinensis])

HSP 1 Score: 127.5 bits (319), Expect = 1.8e-26
Identity = 76/148 (51.35%), Postives = 96/148 (64.86%), Query Frame = 1


Query: 1   MNKTIDRYQNRTKDLMSSNNTVED--------------------VQYRKLLGDGLDLCSI 60
           +NKTI+RYQ +TKD+  ++  VED                    V  RKLLGDGL+ C+I
Sbjct: 1   INKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTI 60

Query: 61  DELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTESSRKQES 120
           DELQQLE QLERSLSRIR+RK Q+ +E+I KLKE+EK+L+EEN  L         R+Q  
Sbjct: 61  DELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKL---------REQCG 120

Query: 121 NQRSESSNRQEI-MDVETELFIGPPERR 128
            Q  ++S  QE+ MDVET+L IGPPERR
Sbjct: 121 MQPRQASEEQEVYMDVETQLSIGPPERR 139

The following BLAST results are available for this feature:

BLAST of ClCG01G003280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGL19_ARATH	1.7e-24	44.59	Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1	[more]
AGL14_ARATH	1.3e-21	41.89	Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2	[more]
AGL42_ARATH	2.1e-19	38.78	MADS-box protein AGL42 OS=Arabidopsis thaliana GN=AGL42 PE=2 SV=1	[more]
SOC1_ARATH	2.3e-18	40.27	MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1	[more]
MAD50_ORYSJ	4.4e-17	36.67	MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 ...	[more]

BLAST of ClCG01G003280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP14_CUCSA	9.8e-56	79.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G156170 PE=4 SV=1	[more]
A0A023JBN5_9ROSI	4.3e-27	51.68	MADS-box transcription factor (Fragment) OS=Pera bumeliifolia PE=2 SV=1	[more]
A0A067FBV6_CITSI	1.2e-26	51.35	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0283631mg PE=4 ...	[more]
C3PTE7_POPTO	3.1e-25	48.98	MADS box transcription factor OS=Populus tomentosa GN=MADS3 PE=2 SV=1	[more]
A0A067F8G6_CITSI	5.2e-25	48.72	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0283631mg PE=4 ...	[more]

BLAST of ClCG01G003280 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G22950.1	9.4e-26	44.59	AGAMOUS-like 19	[more]
AT4G11880.1	7.4e-23	41.89	AGAMOUS-like 14	[more]
AT5G62165.1	1.2e-20	38.78	AGAMOUS-like 42	[more]
AT2G45660.1	1.3e-19	40.27	AGAMOUS-like 20	[more]
AT5G51870.3	1.7e-14	34.07	AGAMOUS-like 71	[more]

BLAST of ClCG01G003280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778699809\|ref\|XP_011654776.1\|	1.4e-55	79.74	PREDICTED: agamous-like MADS-box protein AGL19 [Cucumis sativus]	[more]
gi\|700194980\|gb\|KGN50157.1\|	1.4e-55	79.74	hypothetical protein Csa_5G156170 [Cucumis sativus]	[more]
gi\|659073672\|ref\|XP_008437190.1\|	1.3e-53	77.78	PREDICTED: agamous-like MADS-box protein AGL19 [Cucumis melo]	[more]
gi\|576236071\|gb\|AHH28300.1\|	6.1e-27	51.68	MADS-box transcription factor, partial [Pera bumeliifolia]	[more]
gi\|641844737\|gb\|KDO63629.1\|	1.8e-26	51.35	hypothetical protein CISIN_1g0283631mg, partial [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002487	TF_Kbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0043481	anthocyanin accumulation in tissues in response to UV light
biological_process	GO:0048440	carpel development
biological_process	GO:0048510	regulation of timing of transition from vegetative to reproductive phase
biological_process	GO:0010048	vernalization response
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0000165	MAPK cascade
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0005488	binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G003280.1	ClCG01G003280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 7..90 score: 1.3
IPR002487	Transcription factor, K-box	PROFILE	PS51297	K_BOX	coord: 5..96 score: 12
None	No IPR available	unknown	Coil	Coil	coord: 40..60 score: -coord: 62..89 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 1..132 score: 7.2
None	No IPR available	PANTHER	PTHR11945:SF208	MADS-BOX PROTEIN SOC1	coord: 1..132 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G003280	Csa5G156170	Cucumber (Chinese Long) v2	cuwcgB364
ClCG01G003280	Cla97C01G003350	Watermelon (97103) v2	wcgwmbB089
ClCG01G003280	Bhi12G000302	Wax gourd	wcgwgoB193
ClCG01G003280	CSPI05G05990	Wild cucumber (PI 183967)	cpiwcgB379
ClCG01G003280	Cucsa.302640	Cucumber (Gy14) v1	cgywcgB520
ClCG01G003280	CmaCh15G011860	Cucurbita maxima (Rimu)	cmawcgB259
ClCG01G003280	CmaCh02G014940	Cucurbita maxima (Rimu)	cmawcgB518
ClCG01G003280	CmoCh02G015340	Cucurbita moschata (Rifu)	cmowcgB516
ClCG01G003280	CmoCh15G012500	Cucurbita moschata (Rifu)	cmowcgB247
ClCG01G003280	Lsi09G003210	Bottle gourd (USVL1VR-Ls)	lsiwcgB008
ClCG01G003280	Cp4.1LG13g01770	Cucurbita pepo (Zucchini)	cpewcgB165
ClCG01G003280	Cp4.1LG05g03740	Cucurbita pepo (Zucchini)	cpewcgB639
ClCG01G003280	CsGy5G003270	Cucumber (Gy14) v2	cgybwcgB332
ClCG01G003280	MELO3C005617.2	Melon (DHL92) v3.6.1	medwcgB016
ClCG01G003280	Carg16667	Silver-seed gourd	carwcgB0912
ClCG01G003280	Carg23888	Silver-seed gourd	carwcgB0471
ClCG01G003280	Carg02494	Silver-seed gourd	carwcgB0898
ClCG01G003280	CsaV3_3G016650	Cucumber (Chinese Long) v3	cucwcgB212
ClCG01G003280	CsaV3_3G009400	Cucumber (Chinese Long) v3	cucwcgB209
ClCG01G003280	CsaV3_5G003360	Cucumber (Chinese Long) v3	cucwcgB385

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G003280	Cucumber (Gy14) v1	cgywcgB445
ClCG01G003280	Cucumber (Gy14) v1	cgywcgB557
ClCG01G003280	Cucurbita maxima (Rimu)	cmawcgB292
ClCG01G003280	Cucurbita maxima (Rimu)	cmawcgB352
ClCG01G003280	Cucurbita maxima (Rimu)	cmawcgB733
ClCG01G003280	Cucurbita moschata (Rifu)	cmowcgB285
ClCG01G003280	Cucurbita moschata (Rifu)	cmowcgB348
ClCG01G003280	Cucurbita moschata (Rifu)	cmowcgB737
ClCG01G003280	Wild cucumber (PI 183967)	cpiwcgB210
ClCG01G003280	Wild cucumber (PI 183967)	cpiwcgB211
ClCG01G003280	Cucumber (Chinese Long) v2	cuwcgB207
ClCG01G003280	Cucumber (Chinese Long) v2	cuwcgB208
ClCG01G003280	Melon (DHL92) v3.5.1	mewcgB018
ClCG01G003280	Melon (DHL92) v3.5.1	mewcgB418
ClCG01G003280	Melon (DHL92) v3.5.1	mewcgB422
ClCG01G003280	Watermelon (97103) v1	wcgwmB137
ClCG01G003280	Watermelon (97103) v1	wcgwmB142
ClCG01G003280	Cucurbita pepo (Zucchini)	cpewcgB023
ClCG01G003280	Cucurbita pepo (Zucchini)	cpewcgB202
ClCG01G003280	Bottle gourd (USVL1VR-Ls)	lsiwcgB322
ClCG01G003280	Cucumber (Gy14) v2	cgybwcgB192
ClCG01G003280	Cucumber (Gy14) v2	cgybwcgB191
ClCG01G003280	Melon (DHL92) v3.6.1	medwcgB408
ClCG01G003280	Melon (DHL92) v3.6.1	medwcgB409
ClCG01G003280	Silver-seed gourd	carwcgB0843
ClCG01G003280	Cucumber (Chinese Long) v3	cucwcgB211
ClCG01G003280	Watermelon (97103) v2	wcgwmbB094
ClCG01G003280	Watermelon (97103) v2	wcgwmbB109
ClCG01G003280	Wax gourd	wcgwgoB207
ClCG01G003280	Watermelon (Charleston Gray)	wcgwcgB041
ClCG01G003280	Watermelon (Charleston Gray)	wcgwcgB101