ClCG01G002280 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G002280
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=214
Location	CG_Chr01 : 2216262 .. 2216894 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAAGACAGCCAGAGCTTTCCATTAGCGCACTACCAAGCTCACCACAAATCCGACCAAGAACAACAACTCGCCACTTTCAAAACTCTCCGAAAAGAACGATCCAACAAATGTTTCATCTACATCTTCTCCGCCTTCGTCTTCCTCAGCGTCGCTGTTCTAATCTTCGCTCTCATCGTCCTCCGCCTCAATTCCCCTTCCATCCGCCTCTCTTCCGTCTCAATCCCTAAGTTTTCCATTACTAACGCCAATTCCTCTTCTCCTTCGCTTAATCTCACCTTAATCGCCGAATTCACCGTCGATAATTCCAACTTCGGTCCTTTCGATTTCGACAACGGCACCGTGGGTCTCATGTATGGCAGCGCCATCATCGGTGAGAGGAGTACCGGCGCTGGAAGAGCCGAGGCCAAGGGGAGTATGAGGATGAATGTTACTGTGGAAGCTTCGGCGAAGAATATCAGCGGTGATTCGAATAATTTGGGGATTTTGAATCTGAGTAGCTTTGCGAAACTGAGAGGCAGAGTTCGTTTGATTCATATTTTTAGGAGGAGGATTTCGTCGGAGGTTAGCTGTTCTATGAATCTCGATTTGAATACTCATCAAATTCAGCATAATTGGGTTTGTGAGTAG

mRNA sequence

ATGGTGGAAGACAGCCAGAGCTTTCCATTAGCGCACTACCAAGCTCACCACAAATCCGACCAAGAACAACAACTCGCCACTTTCAAAACTCTCCGAAAAGAACGATCCAACAAATGTTTCATCTACATCTTCTCCGCCTTCGTCTTCCTCAGCGTCGCTGTTCTAATCTTCGCTCTCATCGTCCTCCGCCTCAATTCCCCTTCCATCCGCCTCTCTTCCGTCTCAATCCCTAAGTTTTCCATTACTAACGCCAATTCCTCTTCTCCTTCGCTTAATCTCACCTTAATCGCCGAATTCACCGTCGATAATTCCAACTTCGGTCCTTTCGATTTCGACAACGGCACCGTGGGTCTCATGTATGGCAGCGCCATCATCGGTGAGAGGAGTACCGGCGCTGGAAGAGCCGAGGCCAAGGGGAGTATGAGGATGAATGTTACTGTGGAAGCTTCGGCGAAGAATATCAGCGGTGATTCGAATAATTTGGGGATTTTGAATCTGAGTAGCTTTGCGAAACTGAGAGGCAGAGTTCGTTTGATTCATATTTTTAGGAGGAGGATTTCGTCGGAGGTTAGCTGTTCTATGAATCTCGATTTGAATACTCATCAAATTCAGCATAATTGGGTTTGTGAGTAG

Coding sequence (CDS)

ATGGTGGAAGACAGCCAGAGCTTTCCATTAGCGCACTACCAAGCTCACCACAAATCCGACCAAGAACAACAACTCGCCACTTTCAAAACTCTCCGAAAAGAACGATCCAACAAATGTTTCATCTACATCTTCTCCGCCTTCGTCTTCCTCAGCGTCGCTGTTCTAATCTTCGCTCTCATCGTCCTCCGCCTCAATTCCCCTTCCATCCGCCTCTCTTCCGTCTCAATCCCTAAGTTTTCCATTACTAACGCCAATTCCTCTTCTCCTTCGCTTAATCTCACCTTAATCGCCGAATTCACCGTCGATAATTCCAACTTCGGTCCTTTCGATTTCGACAACGGCACCGTGGGTCTCATGTATGGCAGCGCCATCATCGGTGAGAGGAGTACCGGCGCTGGAAGAGCCGAGGCCAAGGGGAGTATGAGGATGAATGTTACTGTGGAAGCTTCGGCGAAGAATATCAGCGGTGATTCGAATAATTTGGGGATTTTGAATCTGAGTAGCTTTGCGAAACTGAGAGGCAGAGTTCGTTTGATTCATATTTTTAGGAGGAGGATTTCGTCGGAGGTTAGCTGTTCTATGAATCTCGATTTGAATACTCATCAAATTCAGCATAATTGGGTTTGTGAGTAG

Protein sequence

MVEDSQSFPLAHYQAHHKSDQEQQLATFKTLRKERSNKCFIYIFSAFVFLSVAVLIFALIVLRLNSPSIRLSSVSIPKFSITNANSSSPSLNLTLIAEFTVDNSNFGPFDFDNGTVGLMYGSAIIGERSTGAGRAEAKGSMRMNVTVEASAKNISGDSNNLGILNLSSFAKLRGRVRLIHIFRRRISSEVSCSMNLDLNTHQIQHNWVCE

Homology

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BLAST of ClCG01G002280 vs. Swiss-Prot
Match: Y1465_ARATH (Late embryogenesis abundant protein At1g64065 OS=Arabidopsis thaliana GN=At1g64065 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-19
Identity = 68/216 (31.48%), Postives = 114/216 (52.78%), Query Frame = 1


Query: 4   DSQSFPLAHYQAHHKSDQEQQ-LATFKTLRKERSNKCFIYIFSAFVFLSVAVLIFALIVL 63
           D     LA  + + +SD+EQ     ++   +E   KC +Y  +  V +    LI + I L
Sbjct: 3   DEDRITLAPTEIYGRSDEEQSGPRIWRRKTEEPPGKCLVYSLTIIVIIFALCLILSSIFL 62

Query: 64  RLNSPSIRLSSVSIPKFSITNANSSSPSLNLTLIAEFTVDNSNFGPFDFDNGTVGLMYGS 123
           R++ P I   S+S      +  NS++P  N TL+++ ++ NSNFG F+F++ T+ ++Y  
Sbjct: 63  RISKPEIETRSISTRDLR-SGGNSTNPYFNATLVSDISIRNSNFGAFEFEDSTLRVVYAD 122

Query: 124 -AIIGERSTGAGRAEAKGSMRM-NVTVEASA------KNISGDSNNLGILNLSSFAKLRG 183
             ++GE      R EA  ++R+  V VE  +      K++  D   LG L L S A++RG
Sbjct: 123 HGVVGETKIEGRRVEAHKTVRITGVVVEIGSFRLLDTKDLDKDL-RLGFLELRSVAEVRG 182

Query: 184 RVRLIHIFRRRISSEVSCSMNLDLNTHQIQHNWVCE 211
           R++++   R ++ S +SC+M L+L    IQ N +CE
Sbjct: 183 RIKVLGRKRWKV-SVMSCTMRLNLTGRFIQ-NLLCE 214

[Close]

BLAST of ClCG01G002280 vs. TrEMBL
Match: A0A0A0KQT7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152160 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.4e-88
Identity = 172/212 (81.13%), Postives = 187/212 (88.21%), Query Frame = 1


Query: 1   MVEDSQSFPLAHYQAHHKSDQEQQLATFKTLRKERSNKCFIYIFSAFVFLSVAVLIFALI 60
           M EDSQSFPLAHYQAHHK ++EQQLATFK LRKERSNKCFIYIFS FVFLSVA+LIFALI
Sbjct: 1   MGEDSQSFPLAHYQAHHKPNEEQQLATFKILRKERSNKCFIYIFSTFVFLSVALLIFALI 60

Query: 61  VLRLNSPSIRLSSVSIPKFSIT-NANSSSP-SLNLTLIAEFTVDNSNFGPFDFDNGTVGL 120
           VLR+NSPSI LSS+S P+ S++ N NSSSP SLNL+  AEFTVDNSNFGPF+FDNGTVGL
Sbjct: 61  VLRVNSPSISLSSISNPRVSLSNNTNSSSPNSLNLSFNAEFTVDNSNFGPFNFDNGTVGL 120

Query: 121 MYGSAIIGERSTGAGRAEAKGSMRMNVTVEASAKNISGDSNNLGILNLSSFAKLRGRVRL 180
           +YG  I GERSTG GRA AKGS RMNVTVE SAKN+SG +   GILN SSF KLRGRVRL
Sbjct: 121 VYGGMIFGERSTGGGRAGAKGSKRMNVTVEGSAKNVSGSN---GILNFSSFVKLRGRVRL 180

Query: 181 IHIFRRRISSEVSCSMNLDLNTHQIQHNWVCE 211
           IHIFRRR+SSE+SCSMNLDLNTHQIQHNWVCE
Sbjct: 181 IHIFRRRVSSEISCSMNLDLNTHQIQHNWVCE 209

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BLAST of ClCG01G002280 vs. TrEMBL
Match: W9SZD3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006690 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.0e-40
Identity = 97/210 (46.19%), Postives = 132/210 (62.86%), Query Frame = 1


Query: 3   EDSQSFPLAHYQAHHKSDQEQQLATFKTLRKERSNKCFIYIFSAFVFLSVAVLIFALIVL 62
           ++SQS+PLA  + H +SD+E     FK LRKER+NKCF+YIF+  V L   +LIFALIVL
Sbjct: 4   QESQSWPLAPMRVHQRSDEENP--AFKALRKERTNKCFVYIFAGIVILGAILLIFALIVL 63

Query: 63  RLNSPSIRLSSVSIPKFSITNANSSSPSLNLTLIAEFTVDNSNFGPFDF-DNGTVGLMYG 122
           R  SP I+L SV++   S+  + S  PSLN TLIA   + N NFGP+ F  N +   +YG
Sbjct: 64  RSKSPEIKLKSVTVK--SLDYSTSPWPSLNATLIATVAIKNPNFGPYRFGSNNSAVFLYG 123

Query: 123 SAIIGERSTGAGRAEAKGSMRMNVTVEASAKNISGDSNNL------GILNLSSFAKLRGR 182
              +GE+    G+A AK + R+NVTVE     +   SNNL      G++NLSS+ K  GR
Sbjct: 124 GGKLGEQRIRQGKATAKATKRVNVTVEIRTSRLPQGSNNLGGDLSSGMVNLSSYCKFTGR 183

Query: 183 VRLIHIFRRRISSEVSCSMNLDLNTHQIQH 206
           V LI IF  R ++E++C+M L L T  I++
Sbjct: 184 VHLIKIFENRKTAEMNCAMTLVLKTKMIKN 209

[Close]

BLAST of ClCG01G002280 vs. TrEMBL
Match: M5WYG1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022176mg PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 6.0e-36
Identity = 81/209 (38.76%), Postives = 131/209 (62.68%), Query Frame = 1


Query: 3   EDSQSFPLAHYQAHHKSDQEQQLATFKTLRKERSNKCFIYIFSAFVFLSVAVLIFALIVL 62
           ++SQ +PLA  + H +SD+E    TF+ +R+ERSNKCF+Y+F+A V  S+ +L+FAL+VL
Sbjct: 4   QESQVWPLAPSRLHRRSDEENP--TFRAIRRERSNKCFVYVFAAIVLQSIFILVFALVVL 63

Query: 63  RLNSPSIRLSSVSIPKFSITNANSSSPSLNLTLIAEFTVDNSNFGPFDFDNGTVGLMYGS 122
           R+ SP   LSSVS+   S+ +  S + SLN TL+ E  + N NFG + F+  +  L YG 
Sbjct: 64  RVKSPGFNLSSVSVK--SLKHTTSPTSSLNATLVTELAIKNKNFGEYKFEGSSASLWYGG 123

Query: 123 AIIGERSTGAGRAEAKGSMRMNVTVEA-------SAKNISGDSNNLGILNLSSFAKLRGR 182
             +GE   G GR +A+G+ R++++++         AKN      N G L +SS+AKL G+
Sbjct: 124 FKVGEAKIGKGRVKARGTRRVSLSIDVRSNRLPQEAKNGFEGEMNSGYLKISSYAKLTGK 183

Query: 183 VRLIHIFRRRISSEVSCSMNLDLNTHQIQ 205
           V L+ I ++R + + +C+M + L +  ++
Sbjct: 184 VNLMKIMKKRKTIDTNCTMVVVLKSRTVK 208

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BLAST of ClCG01G002280 vs. TrEMBL
Match: F6HUN8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g00530 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.2e-33
Identity = 81/213 (38.03%), Postives = 133/213 (62.44%), Query Frame = 1


Query: 1   MVEDSQSFPLAHYQAHHKSDQEQQLATFKTLRKE---RSNKCFIYIFSAFVFLSVAVLIF 60
           M ED+Q  PLA  + H KSD+E     FK    +   RS+KC +Y+ +  V L+   L+F
Sbjct: 1   MPEDNQFQPLAPARLHGKSDEE--FGVFKPRASKPPRRSSKCPVYVLAGLVTLAAIALVF 60

Query: 61  ALIVLRLNSPSIRLSSVSIPKFSITNANSSSPSLNLTLIAEFTVDNSNFGPFDFDNGTVG 120
           AL VLR+ +P + L SV++   ++T+  S SPS N+TL AE +V N NFG F+F+NGT  
Sbjct: 61  ALAVLRVEAPDVELKSVAVK--NLTHGTSPSPSFNVTLTAEVSVQNKNFGAFNFENGTAT 120

Query: 121 LMYGSAIIGERSTGAGRAEAKGSMRMNVTVEASA------KNISGDSNNLGILNLSSFAK 180
           ++Y   ++G+        E++ + RMNVT++  +      KN+S D ++ G +NL+++A+
Sbjct: 121 VLYEGMVVGDEEFSKAHVESRKTKRMNVTLDVRSDRLWNDKNLSSDISS-GSVNLTTYAQ 180

Query: 181 LRGRVRLIHIFRRRISSEVSCSMNLDLNTHQIQ 205
           + G+VR++ + RRR ++ ++CSM L+L +  IQ
Sbjct: 181 VTGKVRVMKVVRRRTTARMNCSMTLNLTSSSIQ 208

[Close]

BLAST of ClCG01G002280 vs. TrEMBL
Match: A0A061G6P7_THECC (Late embryogenesis abundant hydroxyproline-rich glycofamily protein, putative OS=Theobroma cacao GN=TCM_016355 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 9.0e-32
Identity = 84/217 (38.71%), Postives = 134/217 (61.75%), Query Frame = 1


Query: 1   MVEDSQSFPLAHYQAHHKSDQE-QQLATFKTLRKERSNKCFIYIFSAFVFLSVAVLIFAL 60
           M ED Q+ PLA  + + +SD E   +    + RKE+S+KC +Y+    V     +LIFA 
Sbjct: 1   MQEDPQAKPLAPVEYYPRSDMEFGGIKPTASQRKEKSSKCLVYVLVGMVIQGAVLLIFAS 60

Query: 61  IVLRLNSPSIRLSSVSIPKFSITNANSSSPSLNLTLIAEFTVDNSNFGPFDFDNGTVGLM 120
           IVLR  +P + + SV++   ++   NSS+PS NLTL+ E TV+NSNFG F F+N T  + 
Sbjct: 61  IVLRARTPDVEIVSVTVR--NLKYGNSSAPSFNLTLVTEVTVENSNFGDFKFENTTGTVW 120

Query: 121 YGSAIIGERSTGAGRAEAKGSMRMNVTVEASA------KNISGDSNNLGILNLSSFAKLR 180
            GS ++G+     GRA+A+ + R+NV+V+ S+      KN+S + ++ G+L L+S  KL 
Sbjct: 121 CGSVVVGKMKIPTGRAQARATERLNVSVDVSSLPLPDTKNVSCNISS-GLLELNSHVKLS 180

Query: 181 GRVRLIHIFRRRISSEVSCSMNLDLNTHQIQHNWVCE 211
           G+V +++  +RR   E++C M L+L T Q + ++ CE
Sbjct: 181 GKVSIMNFMKRRRHPEMNCFMTLNL-TGQTKQDFPCE 213

[Close]

BLAST of ClCG01G002280 vs. TAIR10
Match: AT1G64065.1 (AT1G64065.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 98.2 bits (243), Expect = 6.4e-21
Identity = 68/216 (31.48%), Postives = 114/216 (52.78%), Query Frame = 1


Query: 4   DSQSFPLAHYQAHHKSDQEQQ-LATFKTLRKERSNKCFIYIFSAFVFLSVAVLIFALIVL 63
           D     LA  + + +SD+EQ     ++   +E   KC +Y  +  V +    LI + I L
Sbjct: 3   DEDRITLAPTEIYGRSDEEQSGPRIWRRKTEEPPGKCLVYSLTIIVIIFALCLILSSIFL 62

Query: 64  RLNSPSIRLSSVSIPKFSITNANSSSPSLNLTLIAEFTVDNSNFGPFDFDNGTVGLMYGS 123
           R++ P I   S+S      +  NS++P  N TL+++ ++ NSNFG F+F++ T+ ++Y  
Sbjct: 63  RISKPEIETRSISTRDLR-SGGNSTNPYFNATLVSDISIRNSNFGAFEFEDSTLRVVYAD 122

Query: 124 -AIIGERSTGAGRAEAKGSMRM-NVTVEASA------KNISGDSNNLGILNLSSFAKLRG 183
             ++GE      R EA  ++R+  V VE  +      K++  D   LG L L S A++RG
Sbjct: 123 HGVVGETKIEGRRVEAHKTVRITGVVVEIGSFRLLDTKDLDKDL-RLGFLELRSVAEVRG 182

Query: 184 RVRLIHIFRRRISSEVSCSMNLDLNTHQIQHNWVCE 211
           R++++   R ++ S +SC+M L+L    IQ N +CE
Sbjct: 183 RIKVLGRKRWKV-SVMSCTMRLNLTGRFIQ-NLLCE 214

[Close]

BLAST of ClCG01G002280 vs. TAIR10
Match: AT3G54200.1 (AT3G54200.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-15
Identity = 46/190 (24.21%), Postives = 96/190 (50.53%), Query Frame = 1


Query: 21  QEQQLATFKTLRKERSNK-CFIYIFSAFVFLSVAVLIFALIVLRLNSPSIRLSSVSIPKF 80
           Q     T K LR++R+ K C  +     + +++ ++I A  + +   P+  + SV++ + 
Sbjct: 35  QSANTGTAKKLRRKRNCKICICFTILLILLIAIVIVILAFTLFKPKRPTTTIDSVTVDRL 94

Query: 81  SIT-NANSSSPSLNLTLIAEFTVDNSNFGPFDFDNGTVGLMYGSAIIGERSTGAGRAEAK 140
             + N       LNLTL  + ++ N N   F +D+ +  L Y   +IGE    A R  A+
Sbjct: 95  QASVNPLLLKVLLNLTLNVDLSLKNPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIAAR 154

Query: 141 GSMRMNVTVEASAKNISGDSNNL-----GILNLSSFAKLRGRVRLIHIFRRRISSEVSCS 200
            ++ +N+T+   A  +  ++  L     G++ L++F K+ G+V ++ IF+ ++ S  SC 
Sbjct: 155 KTVPLNITLTLMADRLLSETQLLSDVMAGVIPLNTFVKVTGKVTVLKIFKIKVQSSSSCD 214

Query: 201 MNLDLNTHQI 204
           +++ ++   +
Sbjct: 215 LSISVSDRNV 224

[Close]

BLAST of ClCG01G002280 vs. TAIR10
Match: AT4G23930.1 (AT4G23930.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 48/176 (27.27%), Postives = 73/176 (41.48%), Query Frame = 1


Query: 31  LRKERSNKCFIYIFSAF-VFLSVAVLIFALIVLRLNSPSIRLSSVSIPKFSITNANSSSP 90
           + K  SN     + + F VFL +A L   L V R   P I ++SV +P FS+ N+     
Sbjct: 1   MSKSCSNLASCAVATLFIVFLIIAALTVYLTVFRPRDPEISVTSVKVPSFSVANS----- 60

Query: 91  SLNLTLIAEFTVDNSNFGPFDFDNGTVGLMYGSAIIGERSTGAGRAEAKGSMRMNVTV-- 150
           S++ T      V N N   F   N  + L Y    IG     AG  E+  + RM  T   
Sbjct: 61  SVSFTFSQFSAVRNPNRAAFSHYNNVIQLFYYGNRIGYTFVPAGEIESGRTKRMLATFSV 120

Query: 151 -----------EASAKNISGDSNNLGILNLSSFAKLRGRVRLIHIFRRRISSEVSC 193
                      + SA        +   + + S  ++ GRVR++ +F  RI+++ +C
Sbjct: 121 QSFPLAAASSSQISAAQFQNSDRSGSTVEIESKLEMAGRVRVLGLFTHRIAAKCNC 171

[Close]

BLAST of ClCG01G002280 vs. NCBI nr
Match: gi|659073967|ref|XP_008437349.1| (PREDICTED: uncharacterized protein LOC103482793 [Cucumis melo])

HSP 1 Score: 342.4 bits (877), Expect = 5.5e-91
Identity = 175/212 (82.55%), Postives = 192/212 (90.57%), Query Frame = 1


Query: 1   MVEDSQSFPLAHYQAHHKSDQEQQLATFKTLRKERSNKCFIYIFSAFVFLSVAVLIFALI 60
           M EDSQSFPLAHYQAHHK+D+EQQLATFKTL KERSNKCFIYIFS FVFLSVA+LIFALI
Sbjct: 1   MGEDSQSFPLAHYQAHHKTDEEQQLATFKTLHKERSNKCFIYIFSTFVFLSVALLIFALI 60

Query: 61  VLRLNSPSIRLSSVSIPKFSITNA-NSSSP-SLNLTLIAEFTVDNSNFGPFDFDNGTVGL 120
           VLR+NSPSI LS+VSIPKFS++NA NSSSP SL+L+  A FTVDNSNFGPF+FDNGTVGL
Sbjct: 61  VLRVNSPSINLSAVSIPKFSLSNANNSSSPNSLDLSFSAVFTVDNSNFGPFNFDNGTVGL 120

Query: 121 MYGSAIIGERSTGAGRAEAKGSMRMNVTVEASAKNISGDSNNLGILNLSSFAKLRGRVRL 180
           +YG  I GERSTG GRAEAKGS RMNVTVE SAKN+SG +   GIL+LSSF KLRGRVRL
Sbjct: 121 VYGGMIFGERSTGGGRAEAKGSKRMNVTVEGSAKNVSGSN---GILSLSSFVKLRGRVRL 180

Query: 181 IHIFRRRISSEVSCSMNLDLNTHQIQHNWVCE 211
           IH+FRRR+SSE+SCSMNLDLNTHQIQHNWVCE
Sbjct: 181 IHVFRRRVSSEISCSMNLDLNTHQIQHNWVCE 209

[Close]

BLAST of ClCG01G002280 vs. NCBI nr
Match: gi|449452438|ref|XP_004143966.1| (PREDICTED: uncharacterized protein LOC101212642 [Cucumis sativus])

HSP 1 Score: 334.0 bits (855), Expect = 2.0e-88
Identity = 172/212 (81.13%), Postives = 187/212 (88.21%), Query Frame = 1


Query: 1   MVEDSQSFPLAHYQAHHKSDQEQQLATFKTLRKERSNKCFIYIFSAFVFLSVAVLIFALI 60
           M EDSQSFPLAHYQAHHK ++EQQLATFK LRKERSNKCFIYIFS FVFLSVA+LIFALI
Sbjct: 1   MGEDSQSFPLAHYQAHHKPNEEQQLATFKILRKERSNKCFIYIFSTFVFLSVALLIFALI 60

Query: 61  VLRLNSPSIRLSSVSIPKFSIT-NANSSSP-SLNLTLIAEFTVDNSNFGPFDFDNGTVGL 120
           VLR+NSPSI LSS+S P+ S++ N NSSSP SLNL+  AEFTVDNSNFGPF+FDNGTVGL
Sbjct: 61  VLRVNSPSISLSSISNPRVSLSNNTNSSSPNSLNLSFNAEFTVDNSNFGPFNFDNGTVGL 120

Query: 121 MYGSAIIGERSTGAGRAEAKGSMRMNVTVEASAKNISGDSNNLGILNLSSFAKLRGRVRL 180
           +YG  I GERSTG GRA AKGS RMNVTVE SAKN+SG +   GILN SSF KLRGRVRL
Sbjct: 121 VYGGMIFGERSTGGGRAGAKGSKRMNVTVEGSAKNVSGSN---GILNFSSFVKLRGRVRL 180

Query: 181 IHIFRRRISSEVSCSMNLDLNTHQIQHNWVCE 211
           IHIFRRR+SSE+SCSMNLDLNTHQIQHNWVCE
Sbjct: 181 IHIFRRRVSSEISCSMNLDLNTHQIQHNWVCE 209

[Close]

BLAST of ClCG01G002280 vs. NCBI nr
Match: gi|703160743|ref|XP_010112610.1| (hypothetical protein L484_006690 [Morus notabilis])

HSP 1 Score: 172.9 bits (437), Expect = 5.8e-40
Identity = 97/210 (46.19%), Postives = 132/210 (62.86%), Query Frame = 1


Query: 3   EDSQSFPLAHYQAHHKSDQEQQLATFKTLRKERSNKCFIYIFSAFVFLSVAVLIFALIVL 62
           ++SQS+PLA  + H +SD+E     FK LRKER+NKCF+YIF+  V L   +LIFALIVL
Sbjct: 4   QESQSWPLAPMRVHQRSDEENP--AFKALRKERTNKCFVYIFAGIVILGAILLIFALIVL 63

Query: 63  RLNSPSIRLSSVSIPKFSITNANSSSPSLNLTLIAEFTVDNSNFGPFDF-DNGTVGLMYG 122
           R  SP I+L SV++   S+  + S  PSLN TLIA   + N NFGP+ F  N +   +YG
Sbjct: 64  RSKSPEIKLKSVTVK--SLDYSTSPWPSLNATLIATVAIKNPNFGPYRFGSNNSAVFLYG 123

Query: 123 SAIIGERSTGAGRAEAKGSMRMNVTVEASAKNISGDSNNL------GILNLSSFAKLRGR 182
              +GE+    G+A AK + R+NVTVE     +   SNNL      G++NLSS+ K  GR
Sbjct: 124 GGKLGEQRIRQGKATAKATKRVNVTVEIRTSRLPQGSNNLGGDLSSGMVNLSSYCKFTGR 183

Query: 183 VRLIHIFRRRISSEVSCSMNLDLNTHQIQH 206
           V LI IF  R ++E++C+M L L T  I++
Sbjct: 184 VHLIKIFENRKTAEMNCAMTLVLKTKMIKN 209

[Close]

BLAST of ClCG01G002280 vs. NCBI nr
Match: gi|1009156985|ref|XP_015896529.1| (PREDICTED: late embryogenesis abundant protein At1g64065 [Ziziphus jujuba])

HSP 1 Score: 164.1 bits (414), Expect = 2.7e-37
Identity = 86/209 (41.15%), Postives = 133/209 (63.64%), Query Frame = 1


Query: 1   MVEDSQSFPLAHYQAHHKSDQEQQLATFKTLRKERSNKCFIYIFSAFVFLSVAVLIFALI 60
           M E++QS+PL   + +H+SD+E  +  FKT+RKERSNKCF+Y+F+A V  S+ +L+FAL+
Sbjct: 1   MAEENQSWPLNPSRLNHRSDEENPV--FKTIRKERSNKCFVYVFTAIVLQSIFILVFALV 60

Query: 61  VLRLNSPSIRLSSVSIPKFSITNANSSSPSLNLTLIAEFTVDNSNFGPFDFDNGTVGLMY 120
           VLR  SPS++L SV++   S+    S  PSLN TL+AE ++ N NFG F F+N  V  +Y
Sbjct: 61  VLRPKSPSVKLRSVTVK--SLRYTTSPLPSLNATLVAEISIKNPNFGSFKFENSAVSFLY 120

Query: 121 GSAIIGERSTGAGRAEAKGSMRMNVTVEASAKNISGDSN-----NLGILNLSSFAKLRGR 180
               I  + T  G   A+ + R NV+VE  +  +S   N     N GI+ LSS A++ G+
Sbjct: 121 EGKQINGKKTVKGNVSARETKRFNVSVEVRSSRLSEKQNLVNDLNSGIVKLSSHARIVGK 180

Query: 181 VRLIHIFRRRISSEVSCSMNLDLNTHQIQ 205
           V LI I + + + E++C+++++L    I+
Sbjct: 181 VHLIKILKTKKTKEMNCTISINLKNRTIK 205

[Close]

BLAST of ClCG01G002280 vs. NCBI nr
Match: gi|645267309|ref|XP_008239012.1| (PREDICTED: uncharacterized protein LOC103337622 [Prunus mume])

HSP 1 Score: 159.1 bits (401), Expect = 8.6e-36
Identity = 82/209 (39.23%), Postives = 130/209 (62.20%), Query Frame = 1


Query: 3   EDSQSFPLAHYQAHHKSDQEQQLATFKTLRKERSNKCFIYIFSAFVFLSVAVLIFALIVL 62
           ++SQ +PLA  + H +SD+E    TFK +R+ERSNKCF+Y+FSA V  S+ +L+FAL+VL
Sbjct: 4   QESQVWPLAPSRLHRRSDEENP--TFKAIRRERSNKCFVYVFSAIVLQSILILVFALVVL 63

Query: 63  RLNSPSIRLSSVSIPKFSITNANSSSPSLNLTLIAEFTVDNSNFGPFDFDNGTVGLMYGS 122
           R+ SP   LSSV +   ++ +  S + SLN TL+ E  + N NFG + F+  +  L YG 
Sbjct: 64  RVKSPGFNLSSVVVK--NLKHTTSPTSSLNATLVTELAIKNKNFGEYKFEGSSASLWYGG 123

Query: 123 AIIGERSTGAGRAEAKGSMRMNVTVEA-------SAKNISGDSNNLGILNLSSFAKLRGR 182
             +GE   G GR +A+G+ R+++++E         AKN      N G L +SS+AKL G+
Sbjct: 124 FKVGEAKIGKGRVKARGTRRVSLSIEVRSNRLPQEAKNGFEGEINSGYLKISSYAKLSGK 183

Query: 183 VRLIHIFRRRISSEVSCSMNLDLNTHQIQ 205
           V L+ I ++R + + +C+M + L +  ++
Sbjct: 184 VNLMKIMKKRKTIDTNCTMVVVLKSRTVK 208

The following BLAST results are available for this feature:

BLAST of ClCG01G002280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1465_ARATH	1.1e-19	31.48	Late embryogenesis abundant protein At1g64065 OS=Arabidopsis thaliana GN=At1g640...	[more]

BLAST of ClCG01G002280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQT7_CUCSA	1.4e-88	81.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152160 PE=4 SV=1	[more]
W9SZD3_9ROSA	4.0e-40	46.19	Uncharacterized protein OS=Morus notabilis GN=L484_006690 PE=4 SV=1	[more]
M5WYG1_PRUPE	6.0e-36	38.76	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022176mg PE=4 SV=1	[more]
F6HUN8_VITVI	6.2e-33	38.03	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g00530 PE=4 SV=...	[more]
A0A061G6P7_THECC	9.0e-32	38.71	Late embryogenesis abundant hydroxyproline-rich glycofamily protein, putative OS...	[more]

BLAST of ClCG01G002280 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G64065.1	6.4e-21	31.48	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT3G54200.1	2.3e-15	24.21	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT4G23930.1	1.1e-09	27.27	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of ClCG01G002280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073967\|ref\|XP_008437349.1\|	5.5e-91	82.55	PREDICTED: uncharacterized protein LOC103482793 [Cucumis melo]	[more]
gi\|449452438\|ref\|XP_004143966.1\|	2.0e-88	81.13	PREDICTED: uncharacterized protein LOC101212642 [Cucumis sativus]	[more]
gi\|703160743\|ref\|XP_010112610.1\|	5.8e-40	46.19	hypothetical protein L484_006690 [Morus notabilis]	[more]
gi\|1009156985\|ref\|XP_015896529.1\|	2.7e-37	41.15	PREDICTED: late embryogenesis abundant protein At1g64065 [Ziziphus jujuba]	[more]
gi\|645267309\|ref\|XP_008239012.1\|	8.6e-36	39.23	PREDICTED: uncharacterized protein LOC103337622 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G002280.1	ClCG01G002280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 99..192 score: 3.
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 3..205 score: 4.9
None	No IPR available	PANTHER	PTHR31852:SF10	SUBFAMILY NOT NAMED	coord: 3..205 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G002280	Csa5G152160	Cucumber (Chinese Long) v2	cuwcgB364
ClCG01G002280	Cucsa.303580	Cucumber (Gy14) v1	cgywcgB520
ClCG01G002280	CmaCh02G014200	Cucurbita maxima (Rimu)	cmawcgB518
ClCG01G002280	CsGy5G002260	Cucumber (Gy14) v2	cgybwcgB332
ClCG01G002280	MELO3C005720.2	Melon (DHL92) v3.6.1	medwcgB016

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G002280	Silver-seed gourd	carwcgB0575
ClCG01G002280	Silver-seed gourd	carwcgB0898
ClCG01G002280	Silver-seed gourd	carwcgB0912
ClCG01G002280	Cucumber (Chinese Long) v3	cucwcgB299
ClCG01G002280	Cucumber (Chinese Long) v3	cucwcgB385
ClCG01G002280	Cucumber (Chinese Long) v3	cucwcgB456
ClCG01G002280	Watermelon (97103) v2	wcgwmbB089
ClCG01G002280	Watermelon (97103) v2	wcgwmbB107
ClCG01G002280	Watermelon (97103) v2	wcgwmbB114
ClCG01G002280	Wax gourd	wcgwgoB192
ClCG01G002280	Watermelon (Charleston Gray)	wcgwcgB084
ClCG01G002280	Watermelon (Charleston Gray)	wcgwcgB098
ClCG01G002280	Watermelon (Charleston Gray)	wcgwcgB105
ClCG01G002280	Cucurbita moschata (Rifu)	cmowcgB247
ClCG01G002280	Cucumber (Gy14) v1	cgywcgB147
ClCG01G002280	Cucumber (Gy14) v1	cgywcgB225
ClCG01G002280	Cucurbita maxima (Rimu)	cmawcgB259
ClCG01G002280	Cucurbita maxima (Rimu)	cmawcgB290
ClCG01G002280	Cucurbita maxima (Rimu)	cmawcgB316
ClCG01G002280	Cucurbita maxima (Rimu)	cmawcgB635
ClCG01G002280	Cucurbita moschata (Rifu)	cmowcgB284
ClCG01G002280	Cucurbita moschata (Rifu)	cmowcgB311
ClCG01G002280	Cucurbita moschata (Rifu)	cmowcgB516
ClCG01G002280	Cucurbita moschata (Rifu)	cmowcgB637
ClCG01G002280	Wild cucumber (PI 183967)	cpiwcgB299
ClCG01G002280	Wild cucumber (PI 183967)	cpiwcgB379
ClCG01G002280	Wild cucumber (PI 183967)	cpiwcgB455
ClCG01G002280	Cucumber (Chinese Long) v2	cuwcgB206
ClCG01G002280	Cucumber (Chinese Long) v2	cuwcgB289
ClCG01G002280	Cucumber (Chinese Long) v2	cuwcgB434
ClCG01G002280	Melon (DHL92) v3.5.1	mewcgB018
ClCG01G002280	Melon (DHL92) v3.5.1	mewcgB085
ClCG01G002280	Melon (DHL92) v3.5.1	mewcgB421
ClCG01G002280	Melon (DHL92) v3.5.1	mewcgB467
ClCG01G002280	Watermelon (97103) v1	wcgwmB133
ClCG01G002280	Watermelon (97103) v1	wcgwmB142
ClCG01G002280	Watermelon (97103) v1	wcgwmB152
ClCG01G002280	Cucurbita pepo (Zucchini)	cpewcgB165
ClCG01G002280	Cucurbita pepo (Zucchini)	cpewcgB639
ClCG01G002280	Bottle gourd (USVL1VR-Ls)	lsiwcgB010
ClCG01G002280	Bottle gourd (USVL1VR-Ls)	lsiwcgB008
ClCG01G002280	Bottle gourd (USVL1VR-Ls)	lsiwcgB326
ClCG01G002280	Cucumber (Gy14) v2	cgybwcgB267
ClCG01G002280	Cucumber (Gy14) v2	cgybwcgB400
ClCG01G002280	Melon (DHL92) v3.6.1	medwcgB084
ClCG01G002280	Melon (DHL92) v3.6.1	medwcgB461