Carg27638 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27638
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein, putative
Location	Cucurbita_argyrosperma_scaffold_402 : 8209 .. 9493 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTTACCGCTGACCCAACTCCCTCCAATCCACATTTAGGAAAGAACTTGACGAAAAATCCGCCATTATCAACCTTTCCCGGTTTCCTTCTGAACCAATTCATTCTCCTCCAAGACCTTGCAGAGATCGGGGAAGGGATGTCTCGATCTCAAAGCTCCAGATCTCTGCAATTCCTCTCCTTCCTTTTCTCTCTTTCTCTCCATTCTCTTTCAGGTACAAATCCCTCTTTTCGCTTTTCAACTTCTCTGAATCCGGAAGCTAAATCGGGATGAATTTCTTGGTGATTTGTAGCTATGATGATTGTTTGTCGCTTTTTCTATTGAATTTTTTTGTCTCAATACTCGATGATTTTTGCATTTGCGGTAGCATTATTCTGCGTAATGACTTAGGGAATTGTTTTGTTTTTTTTTTTTAATGATATATCGCATTTGAATAGAAATAATCAAAGAGAGATGAATCGAGAATTTCGTTGCAATTTCTTCGAAGATTACTTCACTTTTCCCCATTTTTTTTGCCTCTTTGTTCTGTATTCGTGTTCCTTGAGGAGACATTGAAATCCTGATAATTTAATTCCAATTTGAATGTGTTTTGTAGACCTCGAATTCTCGTTGAATGAACAGAGGAGTTTTCTGGTTTTTGGTTTTTGTTGTGTTTATAGTGTTGGCAGATGAGCATTCAAGTGCTGAAAATGGTGATGGTAAAGCTAAAAAGGGCGATGGTTGGAGGAGCCGATCGATGGGGATCAAGATAGTACTCATATGTCTAGGAGTGGTAACTGTGATTGCCTTTTCTGTGATTCTATGCAAGATATGGCAAAGGAAGAAAAGAGAAGAACAACATGCCCGTCTTCTCAAGCTGTTTGAAGATGATGATGAACTCGAACTCGAACTCGGCCTTCGAGATTGAGCTCCACGATACTCATCCGTCCGTTCTCAATGTTCGACTAACTAAGAGGAGGTGCACATTGTTGATTCCTTTGCCTTTTGTTTAATGATGTATACAAGCTTTTTGATCTTATCCTATTTTGTTTTTGGATGAGCTGAGCTCGTTAAATCATAGCAAATTTTTTCGTGTCAACTAGTTTTGAATAAGTTGTTTCTCCTTCAATCTTTCATGATATGTGAGGCATGTCTCAAATATCAGTCATTGTTTAGTGAATTGGTTCCATTGGTAAATACATGTTCAATTTTTCTATGGGCTGAGTAATTGTGATTCAGAGTATATGCTGTTGAGCTAGCCATGTTCTGAAGAATGAGAAGATTTTCATTTTCAAAATGGATGTATAT

mRNA sequence

CGTTACCGCTGACCCAACTCCCTCCAATCCACATTTAGGAAAGAACTTGACGAAAAATCCGCCATTATCAACCTTTCCCGGTTTCCTTCTGAACCAATTCATTCTCCTCCAAGACCTTGCAGAGATCGGGGAAGGGATGTCTCGATCTCAAAGCTCCAGATCTCTGCAATTCCTCTCCTTCCTTTTCTCTCTTTCTCTCCATTCTCTTTCAGTGTTGGCAGATGAGCATTCAAGTGCTGAAAATGGTGATGGTAAAGCTAAAAAGGGCGATGGTTGGAGGAGCCGATCGATGGGGATCAAGATAGTACTCATATGTCTAGGAGTGGTAACTGTGATTGCCTTTTCTGTGATTCTATGCAAGATATGGCAAAGGAAGAAAAGAGAAGAACAACATGCCCGTCTTCTCAAGCTGTTTGAAGATGATGATGAACTCGAACTCGAACTCGGCCTTCGAGATTGAGCTCCACGATACTCATCCGTCCGTTCTCAATGTTCGACTAACTAAGAGGAGGTGCACATTGTTGATTCCTTTGCCTTTTGTTTAATGATGTATACAAGCTTTTTGATCTTATCCTATTTTGTTTTTGGATGAGCTGAGCTCGTTAAATCATAGCAAATTTTTTCGTGTCAACTAGTTTTGAATAAGTTGTTTCTCCTTCAATCTTTCATGATATGTGAGGCATGTCTCAAATATCAGTCATTGTTTAGTGAATTGGTTCCATTGGTAAATACATGTTCAATTTTTCTATGGGCTGAGTAATTGTGATTCAGAGTATATGCTGTTGAGCTAGCCATGTTCTGAAGAATGAGAAGATTTTCATTTTCAAAATGGATGTATAT

Coding sequence (CDS)

ATGTCTCGATCTCAAAGCTCCAGATCTCTGCAATTCCTCTCCTTCCTTTTCTCTCTTTCTCTCCATTCTCTTTCAGTGTTGGCAGATGAGCATTCAAGTGCTGAAAATGGTGATGGTAAAGCTAAAAAGGGCGATGGTTGGAGGAGCCGATCGATGGGGATCAAGATAGTACTCATATGTCTAGGAGTGGTAACTGTGATTGCCTTTTCTGTGATTCTATGCAAGATATGGCAAAGGAAGAAAAGAGAAGAACAACATGCCCGTCTTCTCAAGCTGTTTGAAGATGATGATGAACTCGAACTCGAACTCGGCCTTCGAGATTGA

Protein sequence

MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLICLGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD

Homology

[Close]

BLAST of Carg27638 vs. NCBI nr
Match: XP_022925369.1 (uncharacterized protein LOC111432678 [Cucurbita moschata])

HSP 1 Score: 201.8 bits (512), Expect = 1.1e-48
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLIC 60
           MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLIC
Sbjct: 1   MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLIC 60

Query: 61  LGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 108
           LGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD
Sbjct: 61  LGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 107

[Close]

BLAST of Carg27638 vs. NCBI nr
Match: XP_022973995.1 (uncharacterized protein LOC111472607 [Cucurbita maxima])

HSP 1 Score: 199.1 bits (505), Expect = 7.4e-48
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLIC 60
           MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAE+GDGKAKKGDGWRSRSMGIKIVLIC
Sbjct: 1   MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAEHGDGKAKKGDGWRSRSMGIKIVLIC 60

Query: 61  LGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 108
           LGVVTV+AFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD
Sbjct: 61  LGVVTVLAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 107

[Close]

BLAST of Carg27638 vs. NCBI nr
Match: XP_023535180.1 (uncharacterized protein LOC111796683 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.4 bits (503), Expect = 1.3e-47
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLIC 60
           MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAE GDGKAKKGDGWRSRSMGIK+VLIC
Sbjct: 1   MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAEQGDGKAKKGDGWRSRSMGIKMVLIC 60

Query: 61  LGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 108
           LGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD
Sbjct: 61  LGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 107

[Close]

BLAST of Carg27638 vs. NCBI nr
Match: XP_023525282.1 (uncharacterized protein LOC111788931 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 84/107 (78.50%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLIC 60
           MSRS+SS SLQFLSFL SLSLHSLSVLA +HSSA+  DGK KK D  +S S GIK+++IC
Sbjct: 1   MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAK--DGKTKKPDAPKSPSTGIKMLIIC 60

Query: 61  LGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 108
           LGVVT IAFSVIL K+WQ+KKREEQHARLLKLFEDDDELE+ELGLRD
Sbjct: 61  LGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 105

[Close]

BLAST of Carg27638 vs. NCBI nr
Match: XP_008459655.1 (PREDICTED: uncharacterized protein LOC103498710 [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 2.6e-32
Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 1   MSRSQSSRSLQFLSFLFS-LSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLI 60
           MS SQSSRSLQFL FLF+ + LHSLSVLA+++SSA++G GK KK D  RS SMGIKI++I
Sbjct: 1   MSGSQSSRSLQFLFFLFNFIFLHSLSVLANDNSSAKDG-GKTKKDDVRRSPSMGIKILII 60

Query: 61  CLGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 108
           CLGVVTVIAFSVIL KIWQ+KKREEQHARLLKLFEDDDELE+ELGLRD
Sbjct: 61  CLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

[Close]

BLAST of Carg27638 vs. TAIR10
Match: AT1G09645.1 (unknown protein)

HSP 1 Score: 74.7 bits (182), Expect = 3.8e-14
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 1   MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLIC 60
           M ++ ++  L +   LF  S+  L         ++N +   K      S   G K++L+ 
Sbjct: 1   MRQNSATGGLSWRRLLFFASI-GLQFFLGLSGDSKNTNAGVKTESHTSSSKTGTKVILVL 60

Query: 61  LGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 108
           +G V V  FS  L K+WQ+KKR+EQ+ARLLKLFE+DDELE+ELGLRD
Sbjct: 61  VGFVAVAMFSFFLYKLWQKKKRDEQYARLLKLFEEDDELEVELGLRD 106

[Close]

BLAST of Carg27638 vs. TAIR10
Match: AT1G57765.2 (unknown protein)

HSP 1 Score: 71.6 bits (174), Expect = 3.2e-13
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 12  FLSFLFSLSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLICLGVVTVIAFSV 71
           FL+ L+  S++   +  D +SS+      AK      S   G K++ I LG   V   S 
Sbjct: 27  FLAMLYLDSVYQ-CISGDPNSSSTG----AKAESHTSSSKTGTKVIFILLGFGAVAGLSF 86

Query: 72  ILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 108
            L K+WQ+KKR+EQ+ARLLKLFE+DDELE+ELGLRD
Sbjct: 87  FLYKLWQKKKRDEQYARLLKLFEEDDELEVELGLRD 117

[Close]

BLAST of Carg27638 vs. TrEMBL
Match: tr|A0A1S3CA76|A0A1S3CA76_CUCME (uncharacterized protein LOC103498710 OS=Cucumis melo OX=3656 GN=LOC103498710 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.7e-32
Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 1   MSRSQSSRSLQFLSFLFS-LSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLI 60
           MS SQSSRSLQFL FLF+ + LHSLSVLA+++SSA++G GK KK D  RS SMGIKI++I
Sbjct: 1   MSGSQSSRSLQFLFFLFNFIFLHSLSVLANDNSSAKDG-GKTKKDDVRRSPSMGIKILII 60

Query: 61  CLGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 108
           CLGVVTVIAFSVIL KIWQ+KKREEQHARLLKLFEDDDELE+ELGLRD
Sbjct: 61  CLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

[Close]

BLAST of Carg27638 vs. TrEMBL
Match: tr|A0A0A0KXZ0|A0A0A0KXZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650624 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 8.4e-32
Identity = 85/108 (78.70%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 1   MSRSQSSRSLQFLSFLFS-LSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLI 60
           MS SQSSRSLQFL F+FS +  HSLSVLA E+SSA++G GK KK D  RS SMGIKI++I
Sbjct: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDG-GKTKKDDARRSPSMGIKILII 60

Query: 61  CLGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 108
           CLGVVTVI FSVIL KIWQ+KKREEQHARLLKLFEDDDELE+ELGLRD
Sbjct: 61  CLGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

[Close]

BLAST of Carg27638 vs. TrEMBL
Match: tr|A0A2N9H5A4|A0A2N9H5A4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37518 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-20
Identity = 58/107 (54.21%), Postives = 81/107 (75.70%), Query Frame = 0


Query: 1   MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLIC 60
           M+R  S RSLQF    + +SL  ++  A++ SS+++ +     G    S S+G+K+V++C
Sbjct: 1   MTRFPSLRSLQFQLLFYLISLQFITGFANDSSSSKSENNVGSHGAS--SSSVGVKVVIVC 60

Query: 61  LGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 108
           LG+V V+AF+V+L KIWQ+KKREEQHARLLKLFEDDDELE+ELG+RD
Sbjct: 61  LGLVAVVAFAVLLFKIWQKKKREEQHARLLKLFEDDDELEVELGIRD 105

[Close]

BLAST of Carg27638 vs. TrEMBL
Match: tr|A0A2I4HEH5|A0A2I4HEH5_9ROSI (uncharacterized protein LOC109016631 OS=Juglans regia OX=51240 GN=LOC109016631 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 60/107 (56.07%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 1   MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLIC 60
           MSR    RSLQF   L S+ L  +S LA +  S +N +     G    S S+G+K+ ++C
Sbjct: 1   MSRFPIPRSLQFPLLLCSIHLQFISGLASDPLSTKNDNKTMSHGSS--SGSIGLKVAIVC 60

Query: 61  LGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 108
           LG+V V+ FSV+L KIWQ+KKREEQHARLLKLFEDDDELE+ELG+RD
Sbjct: 61  LGLVAVVGFSVLLFKIWQKKKREEQHARLLKLFEDDDELEVELGIRD 105

[Close]

BLAST of Carg27638 vs. TrEMBL
Match: tr|A0A2I4GB57|A0A2I4GB57_9ROSI (uncharacterized protein LOC109006337 OS=Juglans regia OX=51240 GN=LOC109006337 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.7e-19
Identity = 59/109 (54.13%), Postives = 81/109 (74.31%), Query Frame = 0


Query: 1   MSRSQSSRSLQF--LSFLFSLSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVL 60
           MSR+   RSLQF  L FL  + LH +  LA++ SS +N +  A  G    S S+G+K+V+
Sbjct: 1   MSRTSIPRSLQFPLLLFLSLIHLHFIPGLANDPSSTKNENKAASHGAS--SGSVGLKVVI 60

Query: 61  ICLGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 108
           +CLG+V  + F+V++ KIW++KKREEQHARLLKLFEDDDEL++ELG+RD
Sbjct: 61  VCLGLVVFVGFAVLVFKIWKKKKREEQHARLLKLFEDDDELDVELGIRD 107

The following BLAST results are available for this feature:

BLAST of Carg27638 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925369.1	1.1e-48	100.00	uncharacterized protein LOC111432678 [Cucurbita moschata]	[more]
XP_022973995.1	7.4e-48	98.13	uncharacterized protein LOC111472607 [Cucurbita maxima]	[more]
XP_023535180.1	1.3e-47	98.13	uncharacterized protein LOC111796683 [Cucurbita pepo subsp. pepo]	[more]
XP_023525282.1	1.2e-32	78.50	uncharacterized protein LOC111788931 [Cucurbita pepo subsp. pepo]	[more]
XP_008459655.1	2.6e-32	79.63	PREDICTED: uncharacterized protein LOC103498710 [Cucumis melo]	[more]

BLAST of Carg27638 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09645.1	3.8e-14	42.06	unknown protein	[more]
AT1G57765.2	3.2e-13	46.88	unknown protein	[more]

BLAST of Carg27638 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg27638 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CA76\|A0A1S3CA76_CUCME	1.7e-32	79.63	uncharacterized protein LOC103498710 OS=Cucumis melo OX=3656 GN=LOC103498710 PE=...	[more]
tr\|A0A0A0KXZ0\|A0A0A0KXZ0_CUCSA	8.4e-32	78.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650624 PE=4 SV=1	[more]
tr\|A0A2N9H5A4\|A0A2N9H5A4_FAGSY	2.5e-20	54.21	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37518 PE=4 SV=1	[more]
tr\|A0A2I4HEH5\|A0A2I4HEH5_9ROSI	1.3e-19	56.07	uncharacterized protein LOC109016631 OS=Juglans regia OX=51240 GN=LOC109016631 P...	[more]
tr\|A0A2I4GB57\|A0A2I4GB57_9ROSI	3.7e-19	54.13	uncharacterized protein LOC109006337 OS=Juglans regia OX=51240 GN=LOC109006337 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27638-RA	Carg27638-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33780	FAMILY NOT NAMED	coord: 8..107
None	No IPR available	PANTHER	PTHR33780:SF1	SUBFAMILY NOT NAMED	coord: 8..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27638	Cla012513	Watermelon (97103) v1	carwmB0347
Carg27638	MELO3C022208	Melon (DHL92) v3.5.1	carmeB0361
Carg27638	ClCG08G000420	Watermelon (Charleston Gray)	carwcgB0348
Carg27638	CSPI05G31310	Wild cucumber (PI 183967)	carcpiB0392
Carg27638	CmaCh09G012370	Cucurbita maxima (Rimu)	carcmaB0500
Carg27638	CmoCh09G013070	Cucurbita moschata (Rifu)	carcmoB0483
Carg27638	Lsi08G000350	Bottle gourd (USVL1VR-Ls)	carlsiB323
Carg27638	Cp4.1LG06g10100	Cucurbita pepo (Zucchini)	carcpeB0496
Carg27638	CsGy5G030630	Cucumber (Gy14) v2	carcgybB0367
Carg27638	MELO3C022208.2	Melon (DHL92) v3.6.1	carmedB0366
Carg27638	CsaV3_5G040360	Cucumber (Chinese Long) v3	carcucB0391
Carg27638	Cla97C08G144850	Watermelon (97103) v2	carwmbB0372

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None