Carg27156 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27156
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Homeobox protein knotted-1, putative
Location	Cucurbita_argyrosperma_scaffold_474 : 44961 .. 48790 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATACCTTTATTCCCATCAATCTCACCACTTCTGGTTATCCATTTTGATCCCTCTTCATCCCTCCACTCACACTCCTTCCCCTTCTCCTCCTCCAATTCCTCTCTCTAAATCCCAGTCAGAACCAATAAAACAAAATTAACTCACACCCATGGTGCATTGAACGAGGTTGTTCCATTCCACTTCTCCATCTCCTTGGAAACCCAACAATAAAGGGTTCATAGGGTTTGTTCCTACCACTGTTTTTGTGTAGCGATTGACATCTGCCCGTGTGACAATAACCCCCCCAAGTACGACCAAAAACACCCTCTTTTACTGTGTCTCTTGAGCTTAAATAGCGGGTGAAAAGGTTAGCCATACCATCATGGACCGTGGCTTGATCATGTTCGATCATAACAACAACAACGACAACAACAACGACAGCGATAGCAACAACAGGAAGATGTTTTTGCCTTACAATGATCATGTTGAAACTTGTAGAGCTAAACTTATGGCTCATCCGTTGTTTCCTCGTCTATTGGCTTCCTATGTGAATTGTCAGAAGGTGGGATTGTGGTTTGGATTTGTTTTGTTGTTGTTCATGATTTCATGTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGGGTTTTTTCAGGTGGGTGCGCCGCCGGATGTGGTGGCGAGGTTAGAACAGGCTTGTACGGTGGCTGCTGGGAATTGTAGGACGGTGGCACGTGGGGATGATCCGGGGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGAGTAAATATGAACAAGAGCTTACTAAGCCTTTTAAAGAAGCTATGGTGTTCTTTTCGAGGATTGAGTCTCAGCTTAAAGCCCTAGCTGCTTCCTCTTCTTCTTCGGATGGTTACTCTCTCTCTCTCTCTATTCTAATCATGTTTTTATTTATGTTCTTAGTGATTAATGCGAGATCTTACGCCAATTGGGTATGAAACGAAACGTCCTTTATAAGGTGTGGAAACCTAGACTTGAAGGGAAAGTTCAAACAGAAACCTCTTTCTATTAGATACGTTTTAAAAACTTGGAGGGGAAGGTTGGAAAGCCTTTTGTTAGAGTATTATGATTAATGTGAGATTTCACGTCAGTGGGAGGAGAACAAAACACTCATTATAAGAGTGTGGAAATCTCTTCCTATCAGATGCGTTTTAAAAATCTCGAGGGGAAGCTTGAAGGGGAAAGTTCAAAGAGAAATCTTTTTCCTATCAGACGCATTTTAAAAACTTTGAAGAGAAGCTCAGGAGCCTTTTGTTAGATTATTATGATCCATGTGAGATCTTGTGTCAGTTTGGAGGAGAACGAAACACCGTTCATAAGGGTGTGGAAACCTCTTTATATCAGGCGAGATTTAAAAATCTCGAGGGAAAGTTTGAAAGGTAAAGTTCAAAGAGAAACCTCTTCCTATCAGACGCGTTTTGAAAACTTCGAGGGGAAGTCCAAGAGCCTTTTGTTAGATTATTATGATTAATGTGAGATCTCACGTCAATGGAGAAAAGAATGAAACACTCCTTAACAGAGTGTAGAAACCTTTTCCTATCAGACGCGTTTAAAATTTTTGAGGGAAAGCCCGAAAAGGATAAGTTTTGAGCTTTTTAGTTCATGGTTTAATTGCACATCAAATCAGCTCAGAAATGAGTACTGGTCGTTTTTTTTTTTTTTTTTGTTAACATCAATTTGTATATAAATATGATGTTTTTTTATTGCAACCATTTTAAGGTTATCCTTTGAAGTTAATTGGTCGTGTAAGTGTAGAAGGTTGCTCTAAAGACTTGAAAAACCAAACATACATTTCTAGGTTAATGCTAAATCTGTTTATGTCTGAATAGGATCCAAGTTGGGTTTGCTTCATCTCCTTACTTTGAATGGTAAAGGAAATGTTTTTTAACCATGGTTAGAGGGTTTTGGGATTCGAACCTAAACGAATACATGTCTTAACCATGGTTATGTTAGTGTAAGCTGTCGTAAAAATTTTAATGAGTTACAAGGTTAAATCTTTAGGATCCCTAAACTTTGTCAAAAGTTCTAATTTAGCACTTACATTTTAGTCCCTGTATTTTTTTTATTTTTTACTATTTAGCTTCTAAACTTTAGTGTAAGAAATAAATTAGTTTGAAAACTTTAGAATTTGTACAAATTTAATCTAAATTAAGTGTTAAAAGTCTTATTAATTAGTTTACAATAGAGATTAAATCGTTACACATTGAAGTTCAGGAGCTAAACTGATAACGATGAACAGTTTGGAACATCTTTTTTGAATTATACATCGAATTTGACAACTTCTTGTTCGTAACATAGTAATAACACCATTGAAAGTTCGGTTCTTGACTCAATATAGATATGTCTTTAGCTTGGTTTCAACTTTATAAAGTGAGAAATGAGATGAATTTCTCCTTTAAATGATTCTATCTTTTGAATATTAATTCCATCCCATGAAGAAAGTTAGGCCTCAAGATGTGGCCCAATGGTTCTTTTTAGGATAGTTTTAGTGAGAAAGATTATATGAATCTTGATTTTTGGGTTAATTTTCAAGTTTAGACTGTTCGGGATTGTTGGGAGTGAGTCCTACGATGAATAACTTAGGGAATGATTATGGGTTTATAAGTAAAAGAATACATTTCTATTGGTACGAGGTTTTTCGGGAAATTCCAAAACAAACCCATGAGAGTTTATGTTCAAAGTAGACAATATCATACCATTGTGACCGTAACTATCTTCTCAGATCATGAATGTTGGTGCTAGGTTATGAGCTGGTCGGGCAAAACGAGTGTTCGAAGGAGATCGAGGTTGTCGATATGAACGAAAACTACATCGACCCACAAGCCGAAGAGAAGGAACTCAAAGGCCAACTTCTACGCAAATATAGCGGATACCTCGGTAGCCTAAAGCAAGAGTTTCTCAAGAAGAAGAAGAATGGGAAGTTGCCTAAAGAAGCTCGGCAGCAGCTGCTTGACTGGTGGAGTAGACACTACAAATGGCCATATCCATCGGTATGCCATTAGACATTGTAATATCGACATGACTGTTATGGATGGTTCGATACTAATGGTCCTTGCTTATATACACACTAATGGCAGGAGTCGCAAAAGGTGGCGTTGGCCGAGTCGACGGGACTGGACTTGAAGCAGATCAATAATTGGTTCATTAACCAAAGGAAGCGCCATTGGAAGCCATCGGAGGACATGCAGTTTGTGGTGATGGATGCTGCTCATCCACACTACTATTTGGATAATCTTATATGCAATCCATTCTCAATGGACTGTTCTTCCACTCTCTTCTGATTACATATCATTTTAATGTTGGTTTGTTTATGTTCTAACTCATGTTCATTATGTTTTGAATTGTTCTACATGTTGAACTCAAACCCTTTCTCTTGATTCTTGGTTTAGGGTTCTTGTATTGTATGCGTTTGTTTTAGTACTAATTTAGCTCGGTTCACATTGTTTAACTTTTCGAAGTTTTATTTTTAAAGTACAATAGAAAATCTCGTTTCTTGATCATCTGTAGTGCTCTATGTTTCAGATCTGGATTCGATATCTGTATGCTCTTAACATTCTGCTGCATTTCCAGTGATATGGTCATATTACTTGGTTCTCGCTTCATATGAGACTCGATCTTAATTCTGAGTGAGATATAAACTTTTGGGGCGTGAAGCTTATTCTTTGATCTATATATGTGAGAGTGACTTTTATAGTCGATTCAATAAGCTTACCATTTTAGCGATTTGACAAAATAGGACGTTGGAAACATAATTTCACGAGATAAAATTCACTCATTTTTATACAGGGTTGAGTAGATGACT

mRNA sequence

CAAAATACCTTTATTCCCATCAATCTCACCACTTCTGGTTATCCATTTTGATCCCTCTTCATCCCTCCACTCACACTCCTTCCCCTTCTCCTCCTCCAATTCCTCTCTCTAAATCCCAGTCAGAACCAATAAAACAAAATTAACTCACACCCATGGTGCATTGAACGAGGTTGTTCCATTCCACTTCTCCATCTCCTTGGAAACCCAACAATAAAGGGTTCATAGGGTTTGTTCCTACCACTGTTTTTGTGTAGCGATTGACATCTGCCCGTGTGACAATAACCCCCCCAAGTACGACCAAAAACACCCTCTTTTACTGTGTCTCTTGAGCTTAAATAGCGGGTGAAAAGGTTAGCCATACCATCATGGACCGTGGCTTGATCATGTTCGATCATAACAACAACAACGACAACAACAACGACAGCGATAGCAACAACAGGAAGATGTTTTTGCCTTACAATGATCATGTTGAAACTTGTAGAGCTAAACTTATGGCTCATCCGTTGTTTCCTCGTCTATTGGCTTCCTATGTGAATTGTCAGAAGGTGGGTGCGCCGCCGGATGTGGTGGCGAGGTTAGAACAGGCTTGTACGGTGGCTGCTGGGAATTGTAGGACGGTGGCACGTGGGGATGATCCGGGGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGAGTAAATATGAACAAGAGCTTACTAAGCCTTTTAAAGAAGCTATGGTGTTCTTTTCGAGGATTGAGTCTCAGCTTAAAGCCCTAGCTGCTTCCTCTTCTTCTTCGGATGGTTATGAGCTGGTCGGGCAAAACGAGTGTTCGAAGGAGATCGAGGTTGTCGATATGAACGAAAACTACATCGACCCACAAGCCGAAGAGAAGGAACTCAAAGGCCAACTTCTACGCAAATATAGCGGATACCTCGGTAGCCTAAAGCAAGAGTTTCTCAAGAAGAAGAAGAATGGGAAGTTGCCTAAAGAAGCTCGGCAGCAGCTGCTTGACTGGTGGAGTAGACACTACAAATGGCCATATCCATCGGAGTCGCAAAAGGTGGCGTTGGCCGAGTCGACGGGACTGGACTTGAAGCAGATCAATAATTGGTTCATTAACCAAAGGAAGCGCCATTGGAAGCCATCGGAGGACATGCAGTTTGTGGTGATGGATGCTGCTCATCCACACTACTATTTGGATAATCTTATATGCAATCCATTCTCAATGGACTGTTCTTCCACTCTCTTCTGATTACATATCATTTTAATGTTGGTTTGTTTATGTTCTAACTCATGTTCATTATGTTTTGAATTGTTCTACATGTTGAACTCAAACCCTTTCTCTTGATTCTTGGTTTAGGGTTCTTGTATTGTATGCGTTTGTTTTAGTACTAATTTAGCTCGGTTCACATTGTTTAACTTTTCGAAGTTTTATTTTTAAAGTACAATAGAAAATCTCGTTTCTTGATCATCTGTAGTGCTCTATGTTTCAGATCTGGATTCGATATCTGTATGCTCTTAACATTCTGCTGCATTTCCAGTGATATGGTCATATTACTTGGTTCTCGCTTCATATGAGACTCGATCTTAATTCTGAGTGAGATATAAACTTTTGGGGCGTGAAGCTTATTCTTTGATCTATATATGTGAGAGTGACTTTTATAGTCGATTCAATAAGCTTACCATTTTAGCGATTTGACAAAATAGGACGTTGGAAACATAATTTCACGAGATAAAATTCACTCATTTTTATACAGGGTTGAGTAGATGACT

Coding sequence (CDS)

ATGGACCGTGGCTTGATCATGTTCGATCATAACAACAACAACGACAACAACAACGACAGCGATAGCAACAACAGGAAGATGTTTTTGCCTTACAATGATCATGTTGAAACTTGTAGAGCTAAACTTATGGCTCATCCGTTGTTTCCTCGTCTATTGGCTTCCTATGTGAATTGTCAGAAGGTGGGTGCGCCGCCGGATGTGGTGGCGAGGTTAGAACAGGCTTGTACGGTGGCTGCTGGGAATTGTAGGACGGTGGCACGTGGGGATGATCCGGGGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGAGTAAATATGAACAAGAGCTTACTAAGCCTTTTAAAGAAGCTATGGTGTTCTTTTCGAGGATTGAGTCTCAGCTTAAAGCCCTAGCTGCTTCCTCTTCTTCTTCGGATGGTTATGAGCTGGTCGGGCAAAACGAGTGTTCGAAGGAGATCGAGGTTGTCGATATGAACGAAAACTACATCGACCCACAAGCCGAAGAGAAGGAACTCAAAGGCCAACTTCTACGCAAATATAGCGGATACCTCGGTAGCCTAAAGCAAGAGTTTCTCAAGAAGAAGAAGAATGGGAAGTTGCCTAAAGAAGCTCGGCAGCAGCTGCTTGACTGGTGGAGTAGACACTACAAATGGCCATATCCATCGGAGTCGCAAAAGGTGGCGTTGGCCGAGTCGACGGGACTGGACTTGAAGCAGATCAATAATTGGTTCATTAACCAAAGGAAGCGCCATTGGAAGCCATCGGAGGACATGCAGTTTGTGGTGATGGATGCTGCTCATCCACACTACTATTTGGATAATCTTATATGCAATCCATTCTCAATGGACTGTTCTTCCACTCTCTTCTGA

Protein sequence

MDRGLIMFDHNNNNDNNNDSDSNNRKMFLPYNDHVETCRAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF

Homology

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BLAST of Carg27156 vs. NCBI nr
Match: XP_022988875.1 (homeobox protein knotted-1-like LET6 [Cucurbita maxima])

HSP 1 Score: 553.9 bits (1426), Expect = 3.2e-154
Identity = 284/290 (97.93%), Postives = 285/290 (98.28%), Query Frame = 0


Query: 1   MDRGLIMFDHXXXXXXXXXXXXXXXXMFLPYNDHVETCRAKLMAHPLFPRLLASYVNCQK 60
           MDRGLIMFDH    XXXXXXXXXXX MFLPYNDHV+TCRAKLMAHPLFPRLLASYVNCQK
Sbjct: 1   MDRGLIMFDH----XXXXXXXXXXXKMFLPYNDHVQTCRAKLMAHPLFPRLLASYVNCQK 60

Query: 61  VGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMV 120
           VGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMV
Sbjct: 61  VGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMV 120

Query: 121 FFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRK 180
           FFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRK
Sbjct: 121 FFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRK 180

Query: 181 YSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQ 240
           YSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQ
Sbjct: 181 YSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQ 240

Query: 241 INNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF 291
           INNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
Sbjct: 241 INNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF 286

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BLAST of Carg27156 vs. NCBI nr
Match: XP_022930731.1 (homeobox protein knotted-1-like LET6 [Cucurbita moschata])

HSP 1 Score: 550.1 bits (1416), Expect = 4.7e-153
Identity = 285/290 (98.28%), Postives = 287/290 (98.97%), Query Frame = 0


Query: 1   MDRGLIMFDHXXXXXXXXXXXXXXXXMFLPYNDHVETCRAKLMAHPLFPRLLASYVNCQK 60
           MDRGLIMFDH  XXXXXXXXXXXXXXMFLPYNDHV++CR KLMAHPLFPRLLASYVNCQK
Sbjct: 1   MDRGLIMFDH--XXXXXXXXXXXXXXMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQK 60

Query: 61  VGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMV 120
           VGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMV
Sbjct: 61  VGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMV 120

Query: 121 FFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRK 180
           FFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRK
Sbjct: 121 FFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRK 180

Query: 181 YSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQ 240
           YSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQ
Sbjct: 181 YSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQ 240

Query: 241 INNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF 291
           INNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
Sbjct: 241 INNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF 288

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BLAST of Carg27156 vs. NCBI nr
Match: XP_023529301.1 (homeobox protein knotted-1-like LET6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 539.3 bits (1388), Expect = 8.2e-150
Identity = 283/291 (97.25%), Postives = 285/291 (97.94%), Query Frame = 0


Query: 1   MDRGLIMFD-HXXXXXXXXXXXXXXXXMFLPYNDHVETCRAKLMAHPLFPRLLASYVNCQ 60
           MDRGLIMFD  XXXXXXXXXXXXXXXX FLPYNDH ++CRAKLMAHPLFPRLLASYVNCQ
Sbjct: 1   MDRGLIMFDXXXXXXXXXXXXXXXXXXXFLPYNDHGQSCRAKLMAHPLFPRLLASYVNCQ 60

Query: 61  KVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAM 120
           KVGAPPDVVARLEQACTVAAGNCRTV RGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAM
Sbjct: 61  KVGAPPDVVARLEQACTVAAGNCRTVGRGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAM 120

Query: 121 VFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLR 180
           VFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLR
Sbjct: 121 VFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLR 180

Query: 181 KYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLK 240
           KYSGYL SLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLK
Sbjct: 181 KYSGYLDSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLK 240

Query: 241 QINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF 291
           QINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF
Sbjct: 241 QINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF 291

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BLAST of Carg27156 vs. NCBI nr
Match: XP_022136261.1 (homeobox protein SBH1-like [Momordica charantia])

HSP 1 Score: 479.9 bits (1234), Expect = 5.9e-132
Identity = 233/255 (91.37%), Postives = 246/255 (96.47%), Query Frame = 0


Query: 37  TCRAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQF 96
           +CRAK+MAHPLFPRLLA+YVNCQKVGAPP+VVARLEQAC VA G+CR  ARGDDP LDQF
Sbjct: 93  SCRAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVAGGSCRATARGDDPALDQF 152

Query: 97  MEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEV 156
           MEAYCEMLSKYEQEL+KPFKEAM+FFSRIESQLKALA SSS+SDG ELVGQ+ECSKE+E 
Sbjct: 153 MEAYCEMLSKYEQELSKPFKEAMLFFSRIESQLKALAVSSSTSDGCELVGQSECSKEVE- 212

Query: 157 VDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRH 216
           VDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQ+LLDWWSRH
Sbjct: 213 VDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQELLDWWSRH 272

Query: 217 YKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNL 276
           YKWPYPSE+QKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDN+
Sbjct: 273 YKWPYPSEAQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNV 332

Query: 277 IC-NPFSMDCSSTLF 291
           IC NPFSMDCSSTLF
Sbjct: 333 ICNNPFSMDCSSTLF 346

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BLAST of Carg27156 vs. NCBI nr
Match: XP_004144513.1 (PREDICTED: homeobox protein knotted-1-like LET6 [Cucumis sativus] >KGN43492.1 hypothetical protein Csa_7G041370 [Cucumis sativus])

HSP 1 Score: 463.8 bits (1192), Expect = 4.4e-127
Identity = 227/261 (86.97%), Postives = 239/261 (91.57%), Query Frame = 0


Query: 32  NDHV----ETCRAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVAR 91
           NDHV     T +AK+MAHPLFPRLL +YVNCQKVGAPP+VVARLEQAC VA G+CR    
Sbjct: 88  NDHVVPPTSTSKAKIMAHPLFPRLLTAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGH 147

Query: 92  GDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQ 151
           G+DP LDQFMEAYCEML+KYEQELTKPFKEAM+FFSRIESQLKA A    SSDG+ELVGQ
Sbjct: 148 GNDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKAEAV---SSDGFELVGQ 207

Query: 152 NECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQ 211
           NECSKEIE VDMNENYIDPQAE KELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQ
Sbjct: 208 NECSKEIE-VDMNENYIDPQAEVKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQ 267

Query: 212 QLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAA 271
           QLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKP+EDMQFVVMDA 
Sbjct: 268 QLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPTEDMQFVVMDAG 327

Query: 272 HPHYYLDNLICNPFSMDCSST 289
           HPHYYLDN+ICNPFSMDCSS+
Sbjct: 328 HPHYYLDNVICNPFSMDCSSS 344

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BLAST of Carg27156 vs. TAIR10
Match: AT1G62360.1 (KNOX/ELK homeobox transcription factor)

HSP 1 Score: 367.9 bits (943), Expect = 5.9e-102
Identity = 186/260 (71.54%), Postives = 211/260 (81.15%), Query Frame = 0


Query: 39  RAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCR----TVARGDDPGLD 98
           +AK+MAHP + RLLA+YVNCQKVGAPP+VVARLE+AC            T   G+DPGLD
Sbjct: 122 KAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACXXXXXXXXSMGPTGCLGEDPGLD 181

Query: 99  QFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSS-DGY--ELVGQNECS 158
           QFMEAYCEML KYEQEL+KPFKEAMVF  R+E Q K+L+ SS SS  GY    + +N   
Sbjct: 182 QFMEAYCEMLVKYEQELSKPFKEAMVFLQRVECQFKSLSLSSPSSFSGYGETAIDRNNNG 241

Query: 159 KEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLD 218
              E VDMN  ++DPQAE++ELKGQLLRKYSGYLGSLKQEF+KK+K GKLPKEARQQLLD
Sbjct: 242 SSEEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLD 301

Query: 219 WWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHP-H 278
           WWSRHYKWPYPSE QK+ALAESTGLD KQINNWFINQRKRHWKPSEDMQFVVMDA HP H
Sbjct: 302 WWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHH 361

Query: 279 YYLDNLICNPFSMD-CSSTL 290
           Y++DN++ NPF MD  SST+
Sbjct: 362 YFMDNVLGNPFPMDHISSTM 381

[Close]

BLAST of Carg27156 vs. TAIR10
Match: AT4G08150.1 (KNOTTED-like from Arabidopsis thaliana)

HSP 1 Score: 274.6 bits (701), Expect = 6.8e-74
Identity = 148/260 (56.92%), Postives = 175/260 (67.31%), Query Frame = 0


Query: 35  VETCRAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQA-----CTVAAGNCRTVARGD 94
           VE  +AK++AHP +  LL +Y++CQK+GAPPDVV R+  A                A   
Sbjct: 131 VEAMKAKIIAHPHYSTLLQAYLDCQKIGAPPDVVDRITAARQDFEARQQRSTPSVSASSR 190

Query: 95  DPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAAS-----------SSS 154
           DP LDQFMEAYC+ML KY +ELT+P +EAM F  RIESQL  L  S           S +
Sbjct: 191 DPELDQFMEAYCDMLVKYREELTRPIQEAMEFIRRIESQLSMLCQSPIHILNNPDGKSDN 250

Query: 155 SDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKN 214
               +   +N    E E+ +     IDP+AE++ELK  LL+KYSGYL SLKQE  KKKK 
Sbjct: 251 MGSSDEEQENNSGGETELPE-----IDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKK 310

Query: 215 GKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSED 274
           GKLPKEARQ+LL WW  HYKWPYPSES+KVALAESTGLD KQINNWFINQRKRHWKPSED
Sbjct: 311 GKLPKEARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSED 370

[Close]

BLAST of Carg27156 vs. TAIR10
Match: AT1G23380.2 (KNOTTED1-like homeobox gene 6)

HSP 1 Score: 228.8 bits (582), Expect = 4.3e-60
Identity = 120/255 (47.06%), Postives = 164/255 (64.31%), Query Frame = 0


Query: 32  NDHVETCRAKLMAHPLFPRLLASYVNCQK--VGAPPDVVARLEQ--------ACTVAAGN 91
           N  +   +AK+  HP +PRLL +Y++CQK  VGAPP++   LE+           V   +
Sbjct: 79  NVSLTVIKAKIACHPSYPRLLQAYIDCQKKQVGAPPEIACLLEEIQRESDVYKQEVVPSS 138

Query: 92  CRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDG 151
           C     G DP LD+FME YC++L KY+ +L +PF EA  F ++IE QL+ L     S+ G
Sbjct: 139 C----FGADPELDEFMETYCDILVKYKSDLARPFDEATCFLNKIEMQLRNLCTGVESARG 198

Query: 152 YELVGQNECSKEIEVVDMNENYID--PQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNG 211
               G     +E+   D +E   D   + E+++LK +LLRK+   + +LK EF KKKK G
Sbjct: 199 VSEDGVISSDEELSGGD-HEVAEDGRQRCEDRDLKDRLLRKFGSRISTLKLEFSKKKKKG 258

Query: 212 KLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDM 271
           KLP+EARQ LLDWW+ HYKWPYP+E  K+ALA++TGLD KQINNWFINQRKRHWKPSE+M
Sbjct: 259 KLPREARQALLDWWNLHYKWPYPTEGDKIALADATGLDQKQINNWFINQRKRHWKPSENM 318

Query: 272 QFVVMDAAHPHYYLD 275
            F +MD +   ++ +
Sbjct: 319 PFAMMDDSSGSFFTE 328

[Close]

BLAST of Carg27156 vs. TAIR10
Match: AT1G70510.1 (KNOTTED-like from Arabidopsis thaliana 2)

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-58
Identity = 114/248 (45.97%), Postives = 157/248 (63.31%), Query Frame = 0


Query: 32  NDHVETCRAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVAR---- 91
           N  +   ++K+ +HPL+PRLL +Y++CQKVGAP ++   LE+         R VA     
Sbjct: 63  NFSLSVIKSKIASHPLYPRLLQTYIDCQKVGAPMEIACILEEIQRENHVYKRDVAPLSCF 122

Query: 92  GDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGY-ELVG 151
           G DP LD+FME YC++L KY+ +L +PF EA  F ++IE QL+ L    +S+    +   
Sbjct: 123 GADPELDEFMETYCDILVKYKTDLARPFDEATTFINKIEMQLQNLCTGPASATALSDDXX 182

Query: 152 QNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEAR 211
                                + +++LK QLLRK+  ++ SLK EF KKKK GKLP+EAR
Sbjct: 183 XXXXXXXXXXXXXXXXXXXXXSNDRDLKDQLLRKFGSHISSLKLEFSKKKKKGKLPREAR 242

Query: 212 QQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDA 271
           Q LLDWW+ H KWPYP+E  K++LAE TGLD KQINNWFINQRKRHWKPSE+M F +MD 
Sbjct: 243 QALLDWWNVHNKWPYPTEGDKISLAEETGLDQKQINNWFINQRKRHWKPSENMPFDMMDD 302

Query: 272 AHPHYYLD 275
           ++  ++ +
Sbjct: 303 SNETFFTE 310

[Close]

BLAST of Carg27156 vs. TAIR10
Match: AT5G25220.1 (KNOTTED1-like homeobox gene 3)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-30
Identity = 85/248 (34.27%), Postives = 128/248 (51.61%), Query Frame = 0


Query: 39  RAKLMAHPLFPRLLASYVNCQKVGAP----PDVVARLEQACTVAA-----GNCRTVARGD 98
           +A++++HPL+ +LL+++V C ++  P    P + A+L Q+  V A     G       GD
Sbjct: 160 KAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVAKYSALGAAAQGLVGD 219

Query: 99  DPGLDQFMEAYCEMLSKYEQELTKPFK----EAMVFFSRIESQLKALAASSSSSDGYELV 158
           D  LDQFM  Y  +L  ++++L +  +    EA++    IE  L++L   S      E +
Sbjct: 220 DKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPG----EGM 279

Query: 159 GQNECSKEIEVVDMNENYID------------PQAEEK--------ELKGQLLRKYSGYL 218
           G      E E V+ + N  D            P   E+        ELK +L + Y   +
Sbjct: 280 GATMSDDEDEQVESDANMFDGGLDVLGFGPLIPTESERSLMERVRQELKHELKQGYKEKI 339

Query: 219 GSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWF 254
             +++E L+K++ GKLP +    L  WW  H KWPYP+E  K  L + TGL LKQINNWF
Sbjct: 340 VDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWF 399

[Close]

BLAST of Carg27156 vs. Swiss-Prot
Match: sp|Q38874|STM_ARATH (Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana OX=3702 GN=STM PE=1 SV=2)

HSP 1 Score: 367.9 bits (943), Expect = 1.1e-100
Identity = 186/260 (71.54%), Postives = 211/260 (81.15%), Query Frame = 0


Query: 39  RAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCR----TVARGDDPGLD 98
           +AK+MAHP + RLLA+YVNCQKVGAPP+VVARLE+AC            T   G+DPGLD
Sbjct: 122 KAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACXXXXXXXXSMGPTGCLGEDPGLD 181

Query: 99  QFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSS-DGY--ELVGQNECS 158
           QFMEAYCEML KYEQEL+KPFKEAMVF  R+E Q K+L+ SS SS  GY    + +N   
Sbjct: 182 QFMEAYCEMLVKYEQELSKPFKEAMVFLQRVECQFKSLSLSSPSSFSGYGETAIDRNNNG 241

Query: 159 KEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLD 218
              E VDMN  ++DPQAE++ELKGQLLRKYSGYLGSLKQEF+KK+K GKLPKEARQQLLD
Sbjct: 242 SSEEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLD 301

Query: 219 WWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHP-H 278
           WWSRHYKWPYPSE QK+ALAESTGLD KQINNWFINQRKRHWKPSEDMQFVVMDA HP H
Sbjct: 302 WWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHH 361

Query: 279 YYLDNLICNPFSMD-CSSTL 290
           Y++DN++ NPF MD  SST+
Sbjct: 362 YFMDNVLGNPFPMDHISSTM 381

[Close]

BLAST of Carg27156 vs. Swiss-Prot
Match: sp|Q9M6D9|STM_BRAOL (Homeobox protein SHOOT MERISTEMLESS OS=Brassica oleracea OX=3712 GN=STM PE=2 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 3.4e-99
Identity = 179/253 (70.75%), Postives = 206/253 (81.42%), Query Frame = 0


Query: 39  RAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCR----TVARGDDPGLD 98
           +AK+MAHP + RLL +YVNCQKVGAPP+V ARLE+ C+ AA        T + G+DPGLD
Sbjct: 124 KAKIMAHPHYHRLLLAYVNCQKVGAPPEVQARLEETCSSAAAAAASMGPTGSLGEDPGLD 183

Query: 99  QFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGY--ELVGQNECSK 158
           QFMEAYCEML KYEQEL+KPFKEAMVF   +E Q K+L+ SS SS GY    + +N    
Sbjct: 184 QFMEAYCEMLVKYEQELSKPFKEAMVFLQHVECQFKSLSLSSPSSLGYGEAAIERNNNGS 243

Query: 159 EIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDW 218
             E VDMN  ++DPQAE++ELKGQLLRKYSGYLGSLKQEF+KK+K GKLPKEARQQLLDW
Sbjct: 244 SEEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDW 303

Query: 219 WSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHP-HY 278
           WSRHYKWPYPSE QK+ALAESTGLD KQINNWFINQRKRHWKPSEDMQFVVMDA HP HY
Sbjct: 304 WSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPLHY 363

Query: 279 YLDNLICNPFSMD 285
           ++ N++ NPF +D
Sbjct: 364 FMGNVLGNPFPID 376

[Close]

BLAST of Carg27156 vs. Swiss-Prot
Match: sp|O22299|LET6_SOLLC (Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum OX=4081 GN=LET6 PE=2 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 1.7e-98
Identity = 177/258 (68.60%), Postives = 209/258 (81.01%), Query Frame = 0


Query: 39  RAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVAR------GDDPG 98
           ++K+MAHP + RLL +Y+NCQK+GAPP+VVARLE+ C  +A   R+ +       G+DP 
Sbjct: 97  KSKIMAHPHYHRLLTAYLNCQKIGAPPEVVARLEEICATSATMGRSSSSSGGGIIGEDPA 156

Query: 99  LDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYEL-VGQNECS 158
           LDQFMEAYCEML+KYEQEL+KPFKEAMVF SRIE Q KAL  + +SS    L    +   
Sbjct: 157 LDQFMEAYCEMLTKYEQELSKPFKEAMVFLSRIECQFKALTLAPNSSHESALGEAMDRNG 216

Query: 159 KEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLD 218
              E VD+N ++IDPQAE++ELKGQLLRKYSGYLGSLKQEF+KK+K GKLPKEARQQL+D
Sbjct: 217 SSDEEVDVNNSFIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLVD 276

Query: 219 WWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHY 278
           WW RH KWPYPSESQK+ALAESTGLD KQINNWFINQRKRHWKPSEDMQFVVMDAAHPHY
Sbjct: 277 WWLRHIKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHY 336

Query: 279 YLDNLICNPFSMDCSSTL 290
           Y+DN++ N F MD + +L
Sbjct: 337 YMDNVLANHFPMDMTPSL 354

[Close]

BLAST of Carg27156 vs. Swiss-Prot
Match: sp|P46608|HSBH1_SOYBN (Homeobox protein SBH1 OS=Glycine max OX=3847 GN=H1 PE=2 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 2.2e-98
Identity = 182/257 (70.82%), Postives = 213/257 (82.88%), Query Frame = 0


Query: 39  RAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQAC----TVAAGNCRTVAR--GDDPG 98
           +AK+MAHP + RLLA+YVNCQKVGAPP+VVARLE+AC    T+A G+    +   G+DP 
Sbjct: 125 KAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAATMAGGDAAAGSSCIGEDPA 184

Query: 99  LDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSS---SSDGYELVGQNE 158
           LDQFMEAYCEML+KYEQEL+KP KEAM+F  RIE Q K L  SSS   S++G +  G +E
Sbjct: 185 LDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISSSDFASNEGGDRNGSSE 244

Query: 159 CSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQL 218
                E VD++ N IDPQAE+++LKGQLLRKYSGYLGSLKQEF+KK+K GKLPKEARQQL
Sbjct: 245 -----EDVDLH-NMIDPQAEDRDLKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQL 304

Query: 219 LDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHP 278
           L+WW+RHYKWPYPSESQK+ALAESTGLD KQINNWFINQRKRHWKPSEDMQFVVMD +HP
Sbjct: 305 LEWWNRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHP 364

Query: 279 HYYLDNLICNPFSMDCS 287
           HYY+DN++ NPF MD S
Sbjct: 365 HYYMDNVLGNPFPMDLS 375

[Close]

BLAST of Carg27156 vs. Swiss-Prot
Match: sp|O65034|KNOSC_ORYSI (Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. indica OX=39946 GN=OSH15 PE=2 SV=2)

HSP 1 Score: 283.1 bits (723), Expect = 3.5e-75
Identity = 150/262 (57.25%), Postives = 181/262 (69.08%), Query Frame = 0


Query: 36  ETCRAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGD--DPGL 95
           E+ +AK+MAHP +  LLA+Y++CQKVGAPP+V+ RL    T A  + R   R D  DP L
Sbjct: 89  ESIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERL--TATAAKLDARPPGRHDARDPEL 148

Query: 96  DQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSS----------SDG-Y 155
           DQFMEAYC ML+KY +ELT+P  EAM F  R+ESQL  +A  +            +DG  
Sbjct: 149 DQFMEAYCNMLAKYREELTRPIDEAMEFLKRVESQLDTIAGGAHGGGAGSARLLLADGKS 208

Query: 156 ELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP 215
           E VG +E   +    +     IDP+AE+KELK QLL+KYSGYL SL+QEF KKKK GKLP
Sbjct: 209 ECVGSSEDDMDPSGRENEPPEIDPRAEDKELKFQLLKKYSGYLSSLRQEFSKKKKKGKLP 268

Query: 216 KEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFV 275
           KEARQ+LL WW  HYKWPYPSE++K+ALAESTGLD KQINNWFINQRKRHWKPSEDM FV
Sbjct: 269 KEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHWKPSEDMPFV 328

Query: 276 VMDAAHPHYYLDNLICNPFSMD 285
           +M+  HP       +  PF  D
Sbjct: 329 MMEGFHPQNAAALYMDGPFMAD 348

[Close]

BLAST of Carg27156 vs. TrEMBL
Match: tr|A0A0A0K5G5|A0A0A0K5G5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041370 PE=3 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 2.9e-127
Identity = 227/261 (86.97%), Postives = 239/261 (91.57%), Query Frame = 0


Query: 32  NDHV----ETCRAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVAR 91
           NDHV     T +AK+MAHPLFPRLL +YVNCQKVGAPP+VVARLEQAC VA G+CR    
Sbjct: 88  NDHVVPPTSTSKAKIMAHPLFPRLLTAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGH 147

Query: 92  GDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQ 151
           G+DP LDQFMEAYCEML+KYEQELTKPFKEAM+FFSRIESQLKA A    SSDG+ELVGQ
Sbjct: 148 GNDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKAEAV---SSDGFELVGQ 207

Query: 152 NECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQ 211
           NECSKEIE VDMNENYIDPQAE KELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQ
Sbjct: 208 NECSKEIE-VDMNENYIDPQAEVKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQ 267

Query: 212 QLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAA 271
           QLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKP+EDMQFVVMDA 
Sbjct: 268 QLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPTEDMQFVVMDAG 327

Query: 272 HPHYYLDNLICNPFSMDCSST 289
           HPHYYLDN+ICNPFSMDCSS+
Sbjct: 328 HPHYYLDNVICNPFSMDCSSS 344

[Close]

BLAST of Carg27156 vs. TrEMBL
Match: tr|A0A1S3C0Z5|A0A1S3C0Z5_CUCME (homeobox protein knotted-1-like LET6 OS=Cucumis melo OX=3656 GN=LOC103495627 PE=3 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 1.3e-122
Identity = 217/249 (87.15%), Postives = 230/249 (92.37%), Query Frame = 0


Query: 42  LMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYC 101
           +MAHPLFPRLL +YVNCQKVGAPP+VVARLEQAC VA G+CR    G+DP LDQFMEAYC
Sbjct: 102 IMAHPLFPRLLTAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGHGNDPALDQFMEAYC 161

Query: 102 EMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNE 161
           EML+KYEQELTKPFKEAM+FFSRIESQLKA A    SSDG++LV QN+CSKEIE VDMNE
Sbjct: 162 EMLTKYEQELTKPFKEAMLFFSRIESQLKAQAV---SSDGFDLVAQNDCSKEIE-VDMNE 221

Query: 162 NYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPY 221
           NYIDPQAE KELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPY
Sbjct: 222 NYIDPQAEVKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPY 281

Query: 222 PSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPF 281
           PSESQKVALAESTGLDLKQINNWFINQRKRHWKP+EDMQFVVMD  HPHYYLDN+ICNPF
Sbjct: 282 PSESQKVALAESTGLDLKQINNWFINQRKRHWKPTEDMQFVVMDTGHPHYYLDNVICNPF 341

Query: 282 SMDCSSTLF 291
           SMDCSS+ F
Sbjct: 342 SMDCSSSHF 346

[Close]

BLAST of Carg27156 vs. TrEMBL
Match: tr|A0A2P5EG32|A0A2P5EG32_9ROSA (Knotted-like homeobox transcription factor OS=Trema orientalis OX=63057 GN=TorKNOX2 PE=3 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 3.3e-107
Identity = 197/260 (75.77%), Postives = 223/260 (85.77%), Query Frame = 0


Query: 39  RAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTV--------AAGNCRTVARGDD 98
           RAK+MAHPLFPRLL +Y NCQKVGAPP+VVARLE+AC          ++G C     G D
Sbjct: 86  RAKIMAHPLFPRLLTAYANCQKVGAPPEVVARLEEACAYNYNNISRSSSGGCIGEDGGQD 145

Query: 99  PGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNEC 158
           P LDQFMEAYCEML+KYEQELTKPFKEAM+F SR+ESQLK L  SS+++D     GQN  
Sbjct: 146 PALDQFMEAYCEMLTKYEQELTKPFKEAMLFLSRVESQLKTLTLSSTTTDS----GQNGS 205

Query: 159 SKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLL 218
           S+  E VD+N++++DPQAE+KELK QLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLL
Sbjct: 206 SE--EEVDVNDSFVDPQAEDKELKVQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLL 265

Query: 219 DWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHP- 278
           +WWSRHYKWPYPSE+QK+ALAE+TGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHP 
Sbjct: 266 EWWSRHYKWPYPSEAQKLALAETTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPG 325

Query: 279 HYYLDNLICNPFSMDCSSTL 290
           HYY+DN++ NPFSMDCSSTL
Sbjct: 326 HYYMDNIMYNPFSMDCSSTL 339

[Close]

BLAST of Carg27156 vs. TrEMBL
Match: tr|A0A2N9GK57|A0A2N9GK57_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27710 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 4.4e-107
Identity = 196/259 (75.68%), Postives = 222/259 (85.71%), Query Frame = 0


Query: 39  RAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQAC-----TVAAGNCRT---VARGDD 98
           RAK+MAHPLFPRLLA+YVNCQKVGAPP+VV RLE+AC      +A    R+      G+D
Sbjct: 76  RAKIMAHPLFPRLLAAYVNCQKVGAPPEVVGRLEEACANSEAAMAGSTSRSGTGCIVGED 135

Query: 99  PGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNEC 158
           PGLDQFMEAYCEML+KYEQEL+KPFKEAM+FFSRIE QLKAL  SSS     +  G+N  
Sbjct: 136 PGLDQFMEAYCEMLNKYEQELSKPFKEAMLFFSRIECQLKALTVSSS-----DFAGRNGS 195

Query: 159 SKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLL 218
           S+  E VD+NEN +DPQAE++ELK QLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQ+LL
Sbjct: 196 SE--EEVDVNENVVDPQAEDRELKTQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQRLL 255

Query: 219 DWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPH 278
           DWWSRHYKWPYPSESQKVALA+STGLDLKQINNWFINQRKRHWKPSEDMQ+VVMDA HPH
Sbjct: 256 DWWSRHYKWPYPSESQKVALADSTGLDLKQINNWFINQRKRHWKPSEDMQYVVMDATHPH 315

Query: 279 YYLDNLICNPFSMDCSSTL 290
           Y++DN++CNPF MDC++ L
Sbjct: 316 YFMDNVMCNPFPMDCTNML 327

[Close]

BLAST of Carg27156 vs. TrEMBL
Match: tr|A0A2P5AYI8|A0A2P5AYI8_PARAD (Knotted-like homeobox transcription factor OS=Parasponia andersonii OX=3476 GN=PanKNOX2 PE=3 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 3.7e-106
Identity = 195/260 (75.00%), Postives = 222/260 (85.38%), Query Frame = 0


Query: 39  RAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTV--------AAGNCRTVARGDD 98
           RAK+MAHPLFPRLL +Y NCQKVGAPP+VVARLE+AC          ++G C     G D
Sbjct: 86  RAKVMAHPLFPRLLTAYANCQKVGAPPEVVARLEEACAYNYNNISRSSSGGCIGEDGGQD 145

Query: 99  PGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNEC 158
           P LDQFMEAYCEML+KYEQELTKPFKEAM+F SR+ESQLK L  +S+++D     GQN  
Sbjct: 146 PALDQFMEAYCEMLTKYEQELTKPFKEAMLFLSRVESQLKTLTLASTTTDS----GQNGS 205

Query: 159 SKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLL 218
           S+  E  D+N++++DPQAE+KELK QLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLL
Sbjct: 206 SE--EEFDVNDSFVDPQAEDKELKVQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLL 265

Query: 219 DWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHP- 278
           +WWSRHYKWPYPSE+QK+ALAE+TGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHP 
Sbjct: 266 EWWSRHYKWPYPSEAQKLALAETTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPG 325

Query: 279 HYYLDNLICNPFSMDCSSTL 290
           HYY+DN++ NPFSMDCSSTL
Sbjct: 326 HYYMDNIMYNPFSMDCSSTL 339

The following BLAST results are available for this feature:

BLAST of Carg27156 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988875.1	3.2e-154	97.93	homeobox protein knotted-1-like LET6 [Cucurbita maxima]	[more]
XP_022930731.1	4.7e-153	98.28	homeobox protein knotted-1-like LET6 [Cucurbita moschata]	[more]
XP_023529301.1	8.2e-150	97.25	homeobox protein knotted-1-like LET6 [Cucurbita pepo subsp. pepo]	[more]
XP_022136261.1	5.9e-132	91.37	homeobox protein SBH1-like [Momordica charantia]	[more]
XP_004144513.1	4.4e-127	86.97	PREDICTED: homeobox protein knotted-1-like LET6 [Cucumis sativus] >KGN43492.1 hy...	[more]

BLAST of Carg27156 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G62360.1	5.9e-102	71.54	KNOX/ELK homeobox transcription factor	[more]
AT4G08150.1	6.8e-74	56.92	KNOTTED-like from Arabidopsis thaliana	[more]
AT1G23380.2	4.3e-60	47.06	KNOTTED1-like homeobox gene 6	[more]
AT1G70510.1	1.8e-58	45.97	KNOTTED-like from Arabidopsis thaliana 2	[more]
AT5G25220.1	1.2e-30	34.27	KNOTTED1-like homeobox gene 3	[more]

BLAST of Carg27156 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q38874\|STM_ARATH	1.1e-100	71.54	Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana OX=3702 GN=STM PE=1 ...	[more]
sp\|Q9M6D9\|STM_BRAOL	3.4e-99	70.75	Homeobox protein SHOOT MERISTEMLESS OS=Brassica oleracea OX=3712 GN=STM PE=2 SV=...	[more]
sp\|O22299\|LET6_SOLLC	1.7e-98	68.60	Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum OX=4081 GN=LET6 PE=...	[more]
sp\|P46608\|HSBH1_SOYBN	2.2e-98	70.82	Homeobox protein SBH1 OS=Glycine max OX=3847 GN=H1 PE=2 SV=1	[more]
sp\|O65034\|KNOSC_ORYSI	3.5e-75	57.25	Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. indica OX=39946 GN=OSH...	[more]

BLAST of Carg27156 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5G5\|A0A0A0K5G5_CUCSA	2.9e-127	86.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041370 PE=3 SV=1	[more]
tr\|A0A1S3C0Z5\|A0A1S3C0Z5_CUCME	1.3e-122	87.15	homeobox protein knotted-1-like LET6 OS=Cucumis melo OX=3656 GN=LOC103495627 PE=...	[more]
tr\|A0A2P5EG32\|A0A2P5EG32_9ROSA	3.3e-107	75.77	Knotted-like homeobox transcription factor OS=Trema orientalis OX=63057 GN=TorKN...	[more]
tr\|A0A2N9GK57\|A0A2N9GK57_FAGSY	4.4e-107	75.68	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27710 PE=3 SV=1	[more]
tr\|A0A2P5AYI8\|A0A2P5AYI8_PARAD	3.7e-106	75.00	Knotted-like homeobox transcription factor OS=Parasponia andersonii OX=3476 GN=P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR017970	Homeobox_CS
IPR008422	Homeobox_KN_domain
IPR001356	Homeobox_dom
IPR005540	KNOX1
IPR005539	ELK_dom
IPR005541	KNOX2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27156-RA	Carg27156-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005541	KNOX2	SMART	SM01256	KNOX2_2	coord: 83..134 e-value: 5.3E-25 score: 99.1
IPR005541	KNOX2	PFAM	PF03791	KNOX2	coord: 88..132 e-value: 1.1E-21 score: 76.1
IPR005539	ELK domain	SMART	SM01188	ELK_2	coord: 172..193 e-value: 1.2E-7 score: 41.4
IPR005539	ELK domain	PFAM	PF03789	ELK	coord: 172..193 e-value: 1.7E-10 score: 40.5
IPR005539	ELK domain	PROSITE	PS51213	ELK	coord: 172..192 score: 11.174
IPR005540	KNOX1	SMART	SM01255	KNOX1_2	coord: 36..80 e-value: 2.4E-15 score: 67.0
IPR005540	KNOX1	PFAM	PF03790	KNOX1	coord: 38..75 e-value: 3.2E-19 score: 68.3
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 194..259 e-value: 1.4E-11 score: 54.5
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 192..255 score: 11.92
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 204..256 e-value: 1.859E-11 score: 57.2533
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 190..262 e-value: 2.9E-22 score: 79.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR11850:SF100	HOMEOBOX PROTEIN SHOOT MERISTEMLESS	coord: 12..289
None	No IPR available	PANTHER	PTHR11850	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	coord: 12..289
IPR008422	Homeobox KN domain	PFAM	PF05920	Homeobox_KN	coord: 212..251 e-value: 4.5E-17 score: 61.6
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 230..253
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 194..269

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27156	Cla015626	Watermelon (97103) v1	carwmB0296
Carg27156	Csa7G041370	Cucumber (Chinese Long) v2	carcuB0329
Carg27156	MELO3C018844	Melon (DHL92) v3.5.1	carmeB0304
Carg27156	ClCG02G002200	Watermelon (Charleston Gray)	carwcgB0296
Carg27156	CSPI07G03420	Wild cucumber (PI 183967)	carcpiB0335
Carg27156	Cucsa.148830	Cucumber (Gy14) v1	carcgyB0354
Carg27156	CmaCh11G018050	Cucurbita maxima (Rimu)	carcmaB0420
Carg27156	CmoCh11G018800	Cucurbita moschata (Rifu)	carcmoB0415
Carg27156	Lsi11G014220	Bottle gourd (USVL1VR-Ls)	carlsiB278
Carg27156	Cp4.1LG04g03800	Cucurbita pepo (Zucchini)	carcpeB0421
Carg27156	CsGy7G003090	Cucumber (Gy14) v2	carcgybB0315
Carg27156	MELO3C018844.2	Melon (DHL92) v3.6.1	carmedB0315
Carg27156	CsaV3_7G003300	Cucumber (Chinese Long) v3	carcucB0335
Carg27156	Cla97C02G028600	Watermelon (97103) v2	carwmbB0312
Carg27156	Bhi05G001210	Wax gourd	carwgoB0390

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None