Carg26972 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26972
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Bet1-like protein family
Location	Cucurbita_argyrosperma_scaffold_499 : 48519 .. 51482 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACGCCAACGCGTTAACGGGAGTCGGAAAAATCCCAATTTGCTTCGCGCTCTCACCTTCCGACTCAGATTGAAGATACTGAAATTGATTCTCGCTATTCGTCTCTTTCCGATCCAATTCTTTCCTTTTGGATTAGGTTTTCATTCTGTCTTCAATGGCGTCTAATTCGTATCGTGGCGGTAGTTCCTTCTACAACGGCGATGCCGCTCCTTATCGTTCCAGGTATTGTTCTTTTTCTTCTACATGCTAAATTCCTAATTTATTTTCAGGAATTAAATGTTTTGTAAGAATTACGAGTTTGTATCATGTGTCTCGGAGAATCAGATCATTTCTATATTTACTGATGTTAAGAATCATAATTACTCAATTCATGTCGCTCAAGTGCAATCGTCCTTTGTTTTGAGGTATTCAGGGAGGGGCTTAGCACGAGACCGGCGGCTGCTTCCGATGAAATTCAACTACAGATCGATCCGATGCAAGGGGACTTGGACGACCAGATCGTTGGTCTCCATGGCCAGGTTAAAAGGCTGAGAAATGTAAGTATATGGTTTTCCATTAATCCATCGTACAGCTTTGCACTTAGATTTATTGATTTGCAAACTGGAAACCGCAGCTAAACTTTTATATAGAGTTCGACATCTAAAAACAAGTTTTTGACAGAAATCTTCAGATTTCTTTCAACTTTTATAAAATATTTGAATCTAGCTTTGTTAGAGGTCAATCTATTTGTAATGATACTATAGGAATTACACCTCGTTCCTTTCTCAATTGAGCTCATGAGATGTACGTTATGGATTGATGCATTTCACATGGTATAGCTGTATGCTTTGTGCTCATATTTGTATTTCATTATAATGGCGGTCACAGGCATGGTTTTCTTTCTGTTTAGTTTCGTGATTTTCCCTCCTTTCTTATGTAAGATATGTGACTTTTTATTATTTAAGAAAACCGAAATATATAAGACATACAGCTGGAACAAGCAGAAGCCATACATTTACAGAGTCTTCGTTATGGCAGTTCTAGTCTATTGGCTCGTCATCGTTCTAAACGTATCATAGCCAATGAAAGAAGTGTGTAAGAATAATATAACAAGCATATCAATGTGAATTATAGTCGGTGGAGCAGAAACCTATTGGGCATCCTCTTTCCTTGGAGCACTTGATGGAAACCTTCCTTAGAGGTTCGCTAGCAATCAGAAGTTATAAAGTCGACATTTTTGAAGTCATAATTTCAATCATTGGTCACTGTCTTCTTGTTTTACCCTTTCTAAAGTCTCCAAAATTGTCTGGCCATTGCCTTAAATATGGTCCTGTATAATGAACAAGAATCTACAAATTAAGCTGATAGAATTCCTTAGAACTAACTATTTGCCTGTAGAAAGATATCTAGTTGGTGTGAGTAAATTTGAATTCTGGCACAGCTGATCAAAATGAAAAGAGGGGATTACTGATGTTATTGGTCTCTAACTGTGTGTTGTATGCCACCAAAATCTGGAAGACGAGCGGCATCTTTTCTTGACCTGGTCGTTTTCTTTTTTATTTATTTATTTATTTATTTTTGAGAAAGATTTGTTTCTAAACGTTGAGCTAAGCGTCCTATTGTTGACAACGTTTTTCTTTCATATTGTCTACAAAAGCTCTTCTTGTTTCTTATCTAGGAAAAAAGAACAGTTGTGTTTTTTTCTTTTTTTTTTTCTGGTTCCAAAGTCAATATCCGGTTATCAGCTACTTAAATCAGACACGTTAATCTGAGAAAGTAACTTTATACTATGATCTGAGCAGCATTTTTCTGTTCAAAGTGCAAAGCTCCTAGCGTCTTCATTTTGCGACTCTTCACAGTTCTGTCATAATTTTACCTTATTGAGATCGTGTACATTTACTTAATTCCTAATCCAATTTTTTATCTTTTATTTTTGGTAATTGGTGTAATTGTTCTGGTGCAGATTGCTCAAGAAATTGGAACAGAAGCAAAATCCCAGCAAGATTTTCTAGATCAGTTGGTATGCAATTTTTTCCTAGTTGTCATATTTTCATTTGATTTTTTTTTTTTTGTCATTATTATTATTTTTTTTTTACTGATTGACGATCTTACTTGAGAGAAAAAAAAAAAAAAAAAAATCTTCAGGTCCTGTTTGCTTAAGAAAATGGAAATTACAGATAATTGGAATAATAATTAATCAACAGGAAAAACAATAGAATGAGAATTAAAATTTGGAAATTGCATCTATTAAATATTTTCTGTAACAAGGACCAGAATGTAAATGATTATCGTTCCTTTCATTTATTAAATTTATCAAAGAATGTTTTCTCCCTTTGGGGGAAGGTAGCTTCTCTGAACTTCTTGTTTCCATCCATCAATGAAAAATTGTATCTTGTTATATGTATATATATGTGTGTATATATATATATATAAAAGAAATGAGAAACGATTCCCATTTGTTATCGTCATACGAAAATTAGGATCATTCCAATTATTTGATTCCTGTTGTGGTAGGGAATTTACATGTTGCTGCCTCATTTTGGATCCTCCTACCTTTTGCCAAAAAAAAAAAACATAAAATGGATCAAAAAGAAAGAAACAAAACAAGTTTTCTTGATAACCTCAGCCTAAAATGCATAGAGCTCAATCAAATTAGAAGAAACTAACTGAAGAAAACCAGTCTCATATCATTTTCTACCAATTCGAAATGCATACAATCCCATATACTTCTCATACTTCCGACTGATTCAAAGTTCTGTTTTCTGTCTTGTTGTAGCAAATGACGTTGATCAAAGCTCAAGCGGGAGTGAAGAACAACGTAAGAAGATTGAACAAAAAAATCATACAGAACGGATCAAATCATGTCGTCCAGGTCGTCGTATTTGCATTGATCTGTTTCTTTATAGTGTATATGTGGTCGAAAATATCCCGAAAATGAATGCTTCCCTACCAGTTGCTGGCCAGTGACGAAGGAAAAGAAACAGG

mRNA sequence

AAACGCCAACGCGTTAACGGGAGTCGGAAAAATCCCAATTTGCTTCGCGCTCTCACCTTCCGACTCAGATTGAAGATACTGAAATTGATTCTCGCTATTCGTCTCTTTCCGATCCAATTCTTTCCTTTTGGATTAGGTTTTCATTCTGTCTTCAATGGCGTCTAATTCGTATCGTGGCGGTAGTTCCTTCTACAACGGCGATGCCGCTCCTTATCGTTCCAGGGAGGGGCTTAGCACGAGACCGGCGGCTGCTTCCGATGAAATTCAACTACAGATCGATCCGATGCAAGGGGACTTGGACGACCAGATCGTTGGTCTCCATGGCCAGGTTAAAAGGCTGAGAAATATTGCTCAAGAAATTGGAACAGAAGCAAAATCCCAGCAAGATTTTCTAGATCAGTTGCAAATGACGTTGATCAAAGCTCAAGCGGGAGTGAAGAACAACGTAAGAAGATTGAACAAAAAAATCATACAGAACGGATCAAATCATGTCGTCCAGGTCGTCGTATTTGCATTGATCTGTTTCTTTATAGTGTATATGTGGTCGAAAATATCCCGAAAATGAATGCTTCCCTACCAGTTGCTGGCCAGTGACGAAGGAAAAGAAACAGG

Coding sequence (CDS)

ATGGCGTCTAATTCGTATCGTGGCGGTAGTTCCTTCTACAACGGCGATGCCGCTCCTTATCGTTCCAGGGAGGGGCTTAGCACGAGACCGGCGGCTGCTTCCGATGAAATTCAACTACAGATCGATCCGATGCAAGGGGACTTGGACGACCAGATCGTTGGTCTCCATGGCCAGGTTAAAAGGCTGAGAAATATTGCTCAAGAAATTGGAACAGAAGCAAAATCCCAGCAAGATTTTCTAGATCAGTTGCAAATGACGTTGATCAAAGCTCAAGCGGGAGTGAAGAACAACGTAAGAAGATTGAACAAAAAAATCATACAGAACGGATCAAATCATGTCGTCCAGGTCGTCGTATTTGCATTGATCTGTTTCTTTATAGTGTATATGTGGTCGAAAATATCCCGAAAATGA

Protein sequence

MASNSYRGGSSFYNGDAAPYRSREGLSTRPAAASDEIQLQIDPMQGDLDDQIVGLHGQVKRLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFALICFFIVYMWSKISRK

Homology

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BLAST of Carg26972 vs. NCBI nr
Match: XP_022940948.1 (bet1-like protein At1g29060 [Cucurbita moschata])

HSP 1 Score: 263.8 bits (673), Expect = 3.1e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MASNSYRGGSSFYNGDAAPYRSREGLSTRPAAASDEIQLQIDPMQGDLDDQIVGLHGQVK 60
           MASNSYRGGSSFYNGDAAPYRSREGLSTRPAAASDEIQLQIDPMQGDLDDQIVGLHGQVK
Sbjct: 1   MASNSYRGGSSFYNGDAAPYRSREGLSTRPAAASDEIQLQIDPMQGDLDDQIVGLHGQVK 60

Query: 61  RLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA 120
           RLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA
Sbjct: 61  RLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA 120

Query: 121 LICFFIVYMWSKISRK 137
           LICFFIVYMWSKISRK
Sbjct: 121 LICFFIVYMWSKISRK 136

[Close]

BLAST of Carg26972 vs. NCBI nr
Match: XP_022980898.1 (bet1-like protein At1g29060 [Cucurbita maxima] >XP_023524421.1 bet1-like protein At1g29060 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.7 bits (670), Expect = 7.0e-67
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MASNSYRGGSSFYNGDAAPYRSREGLSTRPAAASDEIQLQIDPMQGDLDDQIVGLHGQVK 60
           MASNSYRGGSSFYNGDAAPYRSREGLSTRP+AASDEIQLQIDPMQGDLDDQIVGLHGQVK
Sbjct: 1   MASNSYRGGSSFYNGDAAPYRSREGLSTRPSAASDEIQLQIDPMQGDLDDQIVGLHGQVK 60

Query: 61  RLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA 120
           RLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA
Sbjct: 61  RLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA 120

Query: 121 LICFFIVYMWSKISRK 137
           LICFFIVYMWSKISRK
Sbjct: 121 LICFFIVYMWSKISRK 136

[Close]

BLAST of Carg26972 vs. NCBI nr
Match: XP_008466185.1 (PREDICTED: bet1-like protein At1g29060 [Cucumis melo])

HSP 1 Score: 251.5 bits (641), Expect = 1.6e-63
Identity = 127/136 (93.38%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MASNSYRGGSSFYNGDAAPYRSREGLSTRPAAASDEIQLQIDPMQGDLDDQIVGLHGQVK 60
           MAS+S+RGGSSFYNGDAAP+RSREGLSTRPAAASDEIQLQIDPMQGDLDD+IVGLH QVK
Sbjct: 1   MASSSFRGGSSFYNGDAAPFRSREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60

Query: 61  RLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA 120
           RLRNIAQ+IGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHV+QVVVFA
Sbjct: 61  RLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVIQVVVFA 120

Query: 121 LICFFIVYMWSKISRK 137
           LICFFIVYMW+K+SRK
Sbjct: 121 LICFFIVYMWAKMSRK 136

[Close]

BLAST of Carg26972 vs. NCBI nr
Match: XP_004136265.1 (PREDICTED: bet1-like protein At1g29060 [Cucumis sativus] >KGN60242.1 hypothetical protein Csa_3G889980 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 1.4e-62
Identity = 127/136 (93.38%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MASNSYRGGSSFYNGDAAPYRSREGLSTRPAAASDEIQLQIDPMQGDLDDQIVGLHGQVK 60
           MAS+S+RGGSSFYNGDAA +RSREGLSTRPAA+SDEIQLQIDPMQGDLDD+IVGLH QVK
Sbjct: 1   MASSSFRGGSSFYNGDAAHFRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVK 60

Query: 61  RLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA 120
           RLRNIAQ+IGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA
Sbjct: 61  RLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA 120

Query: 121 LICFFIVYMWSKISRK 137
           LICFFIVYMWSK+SRK
Sbjct: 121 LICFFIVYMWSKMSRK 136

[Close]

BLAST of Carg26972 vs. NCBI nr
Match: XP_022976307.1 (bet1-like protein At1g29060 [Cucurbita maxima] >XP_023535245.1 bet1-like protein At1g29060 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.4 bits (612), Expect = 3.7e-60
Identity = 123/136 (90.44%), Postives = 130/136 (95.59%), Query Frame = 0


Query: 1   MASNSYRGGSSFYNGDAAPYRSREGLSTRPAAASDEIQLQIDPMQGDLDDQIVGLHGQVK 60
           MAS+S+RGGSSFYNG+AAPYRSREGLSTR AAASDEIQLQIDPMQGDLDD+IVGLH QVK
Sbjct: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60

Query: 61  RLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA 120
           RLRNIA +IGTEAK Q DFLDQLQMTLIKAQAGVK+NVRRLNKKIIQNGSNHVVQVV+FA
Sbjct: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRRLNKKIIQNGSNHVVQVVIFA 120

Query: 121 LICFFIVYMWSKISRK 137
           LICFFIVYMW KISRK
Sbjct: 121 LICFFIVYMWMKISRK 136

[Close]

BLAST of Carg26972 vs. TAIR10
Match: AT1G29060.1 (Target SNARE coiled-coil domain protein)

HSP 1 Score: 185.3 bits (469), Expect = 2.6e-47
Identity = 93/136 (68.38%), Postives = 119/136 (87.50%), Query Frame = 0


Query: 1   MASNSYRGGSSFYNGDAAPYRSREGLSTRPAAASDEIQLQIDPMQGDLDDQIVGLHGQVK 60
           MASN   GGS +  G A PYRSREGLSTR A+ S+EIQL+IDPM  DLDD+I+GLHGQV+
Sbjct: 1   MASNRGAGGSLY--GGADPYRSREGLSTRNASGSEEIQLRIDPMHSDLDDEILGLHGQVR 60

Query: 61  RLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA 120
           +L+NIAQEIG+EAKSQ+DFLD+LQMTLI+AQAGVKNN+R+LN  II++G+NH++ VV+FA
Sbjct: 61  QLKNIAQEIGSEAKSQRDFLDELQMTLIRAQAGVKNNIRKLNLSIIRSGNNHIMHVVLFA 120

Query: 121 LICFFIVYMWSKISRK 137
           L+ FFI+YMWSK+ ++
Sbjct: 121 LLLFFILYMWSKMFKR 134

[Close]

BLAST of Carg26972 vs. TAIR10
Match: AT4G14600.1 (Target SNARE coiled-coil domain protein)

HSP 1 Score: 184.9 bits (468), Expect = 3.3e-47
Identity = 93/138 (67.39%), Postives = 120/138 (86.96%), Query Frame = 0


Query: 1   MASNSYRGGS--SFYNGDAAPYRSREGLSTRPAAASDEIQLQIDPMQGDLDDQIVGLHGQ 60
           MASN +R G+  S Y G AAPYRSREGLSTR AA S+EIQL+IDPM  DLDD+I GLHGQ
Sbjct: 1   MASNPHRSGAGGSLYGG-AAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQ 60

Query: 61  VKRLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVV 120
           V++L+NIAQEIG+EAK Q+DFLD+LQMTLI+AQAGVKNN+R+LN  II++G+NH++ VV+
Sbjct: 61  VRQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRKLNMSIIRSGNNHIMHVVL 120

Query: 121 FALICFFIVYMWSKISRK 137
           FAL+ FF++Y+WSK+ ++
Sbjct: 121 FALLVFFVLYIWSKMFKR 137

[Close]

BLAST of Carg26972 vs. Swiss-Prot
Match: sp|Q8L9S0|BETL2_ARATH (Bet1-like protein At1g29060 OS=Arabidopsis thaliana OX=3702 GN=At1g29060 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.6e-46
Identity = 93/136 (68.38%), Postives = 119/136 (87.50%), Query Frame = 0


Query: 1   MASNSYRGGSSFYNGDAAPYRSREGLSTRPAAASDEIQLQIDPMQGDLDDQIVGLHGQVK 60
           MASN   GGS +  G A PYRSREGLSTR A+ S+EIQL+IDPM  DLDD+I+GLHGQV+
Sbjct: 1   MASNRGAGGSLY--GGADPYRSREGLSTRNASGSEEIQLRIDPMHSDLDDEILGLHGQVR 60

Query: 61  RLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA 120
           +L+NIAQEIG+EAKSQ+DFLD+LQMTLI+AQAGVKNN+R+LN  II++G+NH++ VV+FA
Sbjct: 61  QLKNIAQEIGSEAKSQRDFLDELQMTLIRAQAGVKNNIRKLNLSIIRSGNNHIMHVVLFA 120

Query: 121 LICFFIVYMWSKISRK 137
           L+ FFI+YMWSK+ ++
Sbjct: 121 LLLFFILYMWSKMFKR 134

[Close]

BLAST of Carg26972 vs. Swiss-Prot
Match: sp|Q8VXX9|BETL1_ARATH (Bet1-like protein At4g14600 OS=Arabidopsis thaliana OX=3702 GN=At4g14600 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 6.0e-46
Identity = 93/138 (67.39%), Postives = 120/138 (86.96%), Query Frame = 0


Query: 1   MASNSYRGGS--SFYNGDAAPYRSREGLSTRPAAASDEIQLQIDPMQGDLDDQIVGLHGQ 60
           MASN +R G+  S Y G AAPYRSREGLSTR AA S+EIQL+IDPM  DLDD+I GLHGQ
Sbjct: 1   MASNPHRSGAGGSLYGG-AAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQ 60

Query: 61  VKRLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVV 120
           V++L+NIAQEIG+EAK Q+DFLD+LQMTLI+AQAGVKNN+R+LN  II++G+NH++ VV+
Sbjct: 61  VRQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRKLNMSIIRSGNNHIMHVVL 120

Query: 121 FALICFFIVYMWSKISRK 137
           FAL+ FF++Y+WSK+ ++
Sbjct: 121 FALLVFFVLYIWSKMFKR 137

[Close]

BLAST of Carg26972 vs. TrEMBL
Match: tr|A0A1S3CQM7|A0A1S3CQM7_CUCME (bet1-like protein At1g29060 OS=Cucumis melo OX=3656 GN=LOC103503676 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-63
Identity = 127/136 (93.38%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MASNSYRGGSSFYNGDAAPYRSREGLSTRPAAASDEIQLQIDPMQGDLDDQIVGLHGQVK 60
           MAS+S+RGGSSFYNGDAAP+RSREGLSTRPAAASDEIQLQIDPMQGDLDD+IVGLH QVK
Sbjct: 1   MASSSFRGGSSFYNGDAAPFRSREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60

Query: 61  RLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA 120
           RLRNIAQ+IGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHV+QVVVFA
Sbjct: 61  RLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVIQVVVFA 120

Query: 121 LICFFIVYMWSKISRK 137
           LICFFIVYMW+K+SRK
Sbjct: 121 LICFFIVYMWAKMSRK 136

[Close]

BLAST of Carg26972 vs. TrEMBL
Match: tr|A0A0A0LHL4|A0A0A0LHL4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889980 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 9.0e-63
Identity = 127/136 (93.38%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MASNSYRGGSSFYNGDAAPYRSREGLSTRPAAASDEIQLQIDPMQGDLDDQIVGLHGQVK 60
           MAS+S+RGGSSFYNGDAA +RSREGLSTRPAA+SDEIQLQIDPMQGDLDD+IVGLH QVK
Sbjct: 1   MASSSFRGGSSFYNGDAAHFRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVK 60

Query: 61  RLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA 120
           RLRNIAQ+IGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA
Sbjct: 61  RLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA 120

Query: 121 LICFFIVYMWSKISRK 137
           LICFFIVYMWSK+SRK
Sbjct: 121 LICFFIVYMWSKMSRK 136

[Close]

BLAST of Carg26972 vs. TrEMBL
Match: tr|A0A0D2SM53|A0A0D2SM53_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G036600 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 7.4e-49
Identity = 103/137 (75.18%), Postives = 121/137 (88.32%), Query Frame = 0


Query: 1   MASNSYR-GGSSFYNGDAAPYRSREGLSTRPAAASDEIQLQIDPMQGDLDDQIVGLHGQV 60
           MAS S R GG SFY G AAPYRSR+GLSTRP A+SDEIQL+IDPM  DLDD+I GL  QV
Sbjct: 1   MASTSNRTGGGSFYGG-AAPYRSRDGLSTRPVASSDEIQLRIDPMHADLDDEISGLRSQV 60

Query: 61  KRLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVF 120
           K+LRN+AQEIG+EAK Q+DFLDQLQMT+IKAQAGVKNN+R+LNK II++GSNH+V VV+F
Sbjct: 61  KQLRNVAQEIGSEAKFQKDFLDQLQMTMIKAQAGVKNNIRKLNKSIIKHGSNHIVHVVLF 120

Query: 121 ALICFFIVYMWSKISRK 137
           AL CFF+VYMWSK+SR+
Sbjct: 121 ALFCFFVVYMWSKVSRR 136

[Close]

BLAST of Carg26972 vs. TrEMBL
Match: tr|A0A061FE80|A0A061FE80_THECC (Target SNARE coiled-coil domain protein OS=Theobroma cacao OX=3641 GN=TCM_034457 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 9.6e-49
Identity = 103/137 (75.18%), Postives = 120/137 (87.59%), Query Frame = 0


Query: 1   MASNSYR-GGSSFYNGDAAPYRSREGLSTRPAAASDEIQLQIDPMQGDLDDQIVGLHGQV 60
           MAS S R GG SFY G  APYRSREGLSTRP A+SDEIQL+IDPM  DLDD+I GL  QV
Sbjct: 1   MASTSNRAGGGSFYGG-GAPYRSREGLSTRPVASSDEIQLRIDPMHADLDDEITGLRSQV 60

Query: 61  KRLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVF 120
           K+LRN+AQEIG+EAK Q+DFLDQLQMT+IKAQAGVKNN+R+LNK II++GSNH+V VV+F
Sbjct: 61  KQLRNVAQEIGSEAKFQKDFLDQLQMTVIKAQAGVKNNIRKLNKSIIKHGSNHIVHVVLF 120

Query: 121 ALICFFIVYMWSKISRK 137
           AL CFF+VYMWSK+SR+
Sbjct: 121 ALFCFFVVYMWSKLSRR 136

[Close]

BLAST of Carg26972 vs. TrEMBL
Match: tr|A0A1R3K2K8|A0A1R3K2K8_9ROSI (Protein transport protein SFT1 OS=Corchorus olitorius OX=93759 GN=COLO4_11964 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.6e-48
Identity = 100/136 (73.53%), Postives = 117/136 (86.03%), Query Frame = 0


Query: 1   MASNSYRGGSSFYNGDAAPYRSREGLSTRPAAASDEIQLQIDPMQGDLDDQIVGLHGQVK 60
           MAS S R GS  + G AAPYRSREGLSTRP A+SDEIQL+IDPM  DLDD+I GL  QVK
Sbjct: 1   MASTSNRTGSGSFYGGAAPYRSREGLSTRPVASSDEIQLRIDPMHSDLDDEITGLRSQVK 60

Query: 61  RLRNIAQEIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRRLNKKIIQNGSNHVVQVVVFA 120
           +LRN+AQEIG+EAK Q+DFLDQLQMT+IKAQAGVKNN+R+LN  II++GSNH+V VV+FA
Sbjct: 61  QLRNVAQEIGSEAKFQKDFLDQLQMTMIKAQAGVKNNIRKLNMSIIKHGSNHIVHVVLFA 120

Query: 121 LICFFIVYMWSKISRK 137
           L CFF+VYMWSK SR+
Sbjct: 121 LFCFFVVYMWSKFSRR 136

The following BLAST results are available for this feature:

BLAST of Carg26972 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940948.1	3.1e-67	100.00	bet1-like protein At1g29060 [Cucurbita moschata]	[more]
XP_022980898.1	7.0e-67	99.26	bet1-like protein At1g29060 [Cucurbita maxima] >XP_023524421.1 bet1-like protein...	[more]
XP_008466185.1	1.6e-63	93.38	PREDICTED: bet1-like protein At1g29060 [Cucumis melo]	[more]
XP_004136265.1	1.4e-62	93.38	PREDICTED: bet1-like protein At1g29060 [Cucumis sativus] >KGN60242.1 hypothetica...	[more]
XP_022976307.1	3.7e-60	90.44	bet1-like protein At1g29060 [Cucurbita maxima] >XP_023535245.1 bet1-like protein...	[more]

BLAST of Carg26972 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G29060.1	2.6e-47	68.38	Target SNARE coiled-coil domain protein	[more]
AT4G14600.1	3.3e-47	67.39	Target SNARE coiled-coil domain protein	[more]

BLAST of Carg26972 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L9S0\|BETL2_ARATH	4.6e-46	68.38	Bet1-like protein At1g29060 OS=Arabidopsis thaliana OX=3702 GN=At1g29060 PE=2 SV...	[more]
sp\|Q8VXX9\|BETL1_ARATH	6.0e-46	67.39	Bet1-like protein At4g14600 OS=Arabidopsis thaliana OX=3702 GN=At4g14600 PE=2 SV...	[more]

BLAST of Carg26972 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CQM7\|A0A1S3CQM7_CUCME	1.1e-63	93.38	bet1-like protein At1g29060 OS=Cucumis melo OX=3656 GN=LOC103503676 PE=4 SV=1	[more]
tr\|A0A0A0LHL4\|A0A0A0LHL4_CUCSA	9.0e-63	93.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889980 PE=4 SV=1	[more]
tr\|A0A0D2SM53\|A0A0D2SM53_GOSRA	7.4e-49	75.18	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G036600 PE=4 ...	[more]
tr\|A0A061FE80\|A0A061FE80_THECC	9.6e-49	75.18	Target SNARE coiled-coil domain protein OS=Theobroma cacao OX=3641 GN=TCM_034457...	[more]
tr\|A0A1R3K2K8\|A0A1R3K2K8_9ROSI	1.6e-48	73.53	Protein transport protein SFT1 OS=Corchorus olitorius OX=93759 GN=COLO4_11964 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000727	T_SNARE_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26972-RA	Carg26972-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000727	Target SNARE coiled-coil homology domain	SMART	SM00397	tSNARE_6	coord: 37..104 e-value: 2.5E-4 score: 30.4
IPR000727	Target SNARE coiled-coil homology domain	PROSITE	PS50192	T_SNARE	coord: 42..104 score: 11.384
None	No IPR available	GENE3D	G3DSA:1.20.5.110		coord: 49..112 e-value: 1.9E-8 score: 36.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR12791	GOLGI SNARE BET1-RELATED	coord: 14..136
None	No IPR available	PANTHER	PTHR12791:SF32	SUBFAMILY NOT NAMED	coord: 14..136
None	No IPR available	CDD	cd15841	SNARE_Qc	coord: 47..103 e-value: 1.59578E-11 score: 54.872
None	No IPR available	SUPERFAMILY	SSF58038	SNARE fusion complex	coord: 37..103

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26972	Cla023040	Watermelon (97103) v1	carwmB0575
Carg26972	Csa3G889980	Cucumber (Chinese Long) v2	carcuB0605
Carg26972	MELO3C003542	Melon (DHL92) v3.5.1	carmeB0581
Carg26972	ClCG11G014400	Watermelon (Charleston Gray)	carwcgB0563
Carg26972	CSPI03G45350	Wild cucumber (PI 183967)	carcpiB0611
Carg26972	Cucsa.311760	Cucumber (Gy14) v1	carcgyB0652
Carg26972	CmaCh09G005820	Cucurbita maxima (Rimu)	carcmaB0809
Carg26972	CmaCh01G016320	Cucurbita maxima (Rimu)	carcmaB0810
Carg26972	CmoCh01G016770	Cucurbita moschata (Rifu)	carcmoB0786
Carg26972	Lsi04G022650	Bottle gourd (USVL1VR-Ls)	carlsiB525
Carg26972	Cp4.1LG02g05310	Cucurbita pepo (Zucchini)	carcpeB0824
Carg26972	CsGy3G042830	Cucumber (Gy14) v2	carcgybB0579
Carg26972	MELO3C003542.2	Melon (DHL92) v3.6.1	carmedB0588
Carg26972	CsaV3_3G047800	Cucumber (Chinese Long) v3	carcucB0612
Carg26972	Cla97C11G220410	Watermelon (97103) v2	carwmbB0603
Carg26972	Bhi09G002097	Wax gourd	carwgoB0689

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None