Carg26960 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26960
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	serine/arginine repetitive matrix protein 2-like
Location	Cucurbita_argyrosperma_scaffold_449 : 53002 .. 53517 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAAGCTGAAGAAGGTGAGGACAAGAGACGATATGTGGATTGTGGAAGAAGATTACCACACAGGAGTATCAGCCTCGGTGCCATTCCAGTGGGAGTCAGAGCCAGGCACTCCCAAGGCCAATTTCCCTGAAAATGGGGCCTTCCTCTCTCCTCTCACGCCCCCACCTTCCTATTTCTCCACCAATCCTAACTCCCCCCTCGGCCTTAACTCTTCTAAGACCTTTCATAGAGCCAGTTTCCTCAACAATGTCTTCAGAAAGCTTTCTATGAAGGCCAGTCTGCAGCCTCGGTCGCCCGGCTCTATGTTGTCATCTTCGTCTTCGAGTTCTAGCAGGGAAAGAGGGACACCTGGAAGCCCGAGGAGATTATCATTTGATTCGAGGGTAGACGATGACAACGGCAACGAAGAGGAGACTGTTGAATCACCTGTTTCTACTTTGTCCTTTGGACATGGAAATGATAAAGGATGCTACCCAAAGTTGGTTAAGGTATTCACTAGAGATTCTAAATGA

mRNA sequence

ATGAATAAGCTGAAGAAGGTGAGGACAAGAGACGATATGTGGATTGTGGAAGAAGATTACCACACAGGAGTATCAGCCTCGGTGCCATTCCAGTGGGAGTCAGAGCCAGGCACTCCCAAGGCCAATTTCCCTGAAAATGGGGCCTTCCTCTCTCCTCTCACGCCCCCACCTTCCTATTTCTCCACCAATCCTAACTCCCCCCTCGGCCTTAACTCTTCTAAGACCTTTCATAGAGCCAGTTTCCTCAACAATGTCTTCAGAAAGCTTTCTATGAAGGCCAGTCTGCAGCCTCGGTCGCCCGGCTCTATGTTGTCATCTTCGTCTTCGAGTTCTAGCAGGGAAAGAGGGACACCTGGAAGCCCGAGGAGATTATCATTTGATTCGAGGGTAGACGATGACAACGGCAACGAAGAGGAGACTGTTGAATCACCTGTTTCTACTTTGTCCTTTGGACATGGAAATGATAAAGGATGCTACCCAAAGTTGGTTAAGGTATTCACTAGAGATTCTAAATGA

Coding sequence (CDS)

ATGAATAAGCTGAAGAAGGTGAGGACAAGAGACGATATGTGGATTGTGGAAGAAGATTACCACACAGGAGTATCAGCCTCGGTGCCATTCCAGTGGGAGTCAGAGCCAGGCACTCCCAAGGCCAATTTCCCTGAAAATGGGGCCTTCCTCTCTCCTCTCACGCCCCCACCTTCCTATTTCTCCACCAATCCTAACTCCCCCCTCGGCCTTAACTCTTCTAAGACCTTTCATAGAGCCAGTTTCCTCAACAATGTCTTCAGAAAGCTTTCTATGAAGGCCAGTCTGCAGCCTCGGTCGCCCGGCTCTATGTTGTCATCTTCGTCTTCGAGTTCTAGCAGGGAAAGAGGGACACCTGGAAGCCCGAGGAGATTATCATTTGATTCGAGGGTAGACGATGACAACGGCAACGAAGAGGAGACTGTTGAATCACCTGTTTCTACTTTGTCCTTTGGACATGGAAATGATAAAGGATGCTACCCAAAGTTGGTTAAGGTATTCACTAGAGATTCTAAATGA

Protein sequence

MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYFSTNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSSSSSSSSRERGTPGSPRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK

Homology

[Close]

BLAST of Carg26960 vs. NCBI nr
Match: XP_022964745.1 (uncharacterized protein LOC111464733 [Cucurbita moschata])

HSP 1 Score: 321.2 bits (822), Expect = 2.1e-84
Identity = 165/171 (96.49%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60
           MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF
Sbjct: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60

Query: 61  STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSXXXXXXXXXRGTPGS 120
           STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGS+LSXXXXXXXX RGTPGS
Sbjct: 61  STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSLLSXXXXXXXXERGTPGS 120

Query: 121 PRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK 172
           PRRLSFDSRVDDDNGN+EE VESPVSTLSFGHGNDKGCYP LVKVF RDSK
Sbjct: 121 PRRLSFDSRVDDDNGNQEENVESPVSTLSFGHGNDKGCYPNLVKVFARDSK 171

[Close]

BLAST of Carg26960 vs. NCBI nr
Match: XP_023519368.1 (uncharacterized protein LOC111782803 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.9 bits (816), Expect = 1.0e-83
Identity = 164/171 (95.91%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60
           MNKLKK+RTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF
Sbjct: 1   MNKLKKLRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60

Query: 61  STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSXXXXXXXXXRGTPGS 120
           STNPNSPLGLNSSK FHRASFLNNVFRKLSMKASLQPRSPGS+LSXXXXXXXX RGTPGS
Sbjct: 61  STNPNSPLGLNSSKPFHRASFLNNVFRKLSMKASLQPRSPGSLLSXXXXXXXXERGTPGS 120

Query: 121 PRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK 172
           PRRLSFDSRVDDDNGNEEE VESPVSTLSFGHG DKGCYPKL KVFTRDSK
Sbjct: 121 PRRLSFDSRVDDDNGNEEENVESPVSTLSFGHGTDKGCYPKLAKVFTRDSK 171

[Close]

BLAST of Carg26960 vs. NCBI nr
Match: XP_022970378.1 (uncharacterized protein LOC111469381 [Cucurbita maxima])

HSP 1 Score: 311.6 bits (797), Expect = 1.6e-81
Identity = 164/172 (95.35%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60
           MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF
Sbjct: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60

Query: 61  STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSM-LSXXXXXXXXXRGTPG 120
           STNPNSPLGLNSSK FHRASFLNNVFRKLSMKASLQPRSPGS+   XXXXXXXXX GTPG
Sbjct: 61  STNPNSPLGLNSSKPFHRASFLNNVFRKLSMKASLQPRSPGSLXXXXXXXXXXXXXGTPG 120

Query: 121 SPRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK 172
           SPRRLSFDSRVDDDNGNEEE VESPVSTLSFGHGND+GCYPKLVKVFTRDSK
Sbjct: 121 SPRRLSFDSRVDDDNGNEEENVESPVSTLSFGHGNDEGCYPKLVKVFTRDSK 172

[Close]

BLAST of Carg26960 vs. NCBI nr
Match: XP_008457312.1 (PREDICTED: uncharacterized protein At4g00950 [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 1.4e-32
Identity = 97/178 (54.49%), Postives = 114/178 (64.04%), Query Frame = 0


Query: 3   KLKKVRTRDDM---WIVEEDYHTGVSASVPFQWESEPGTPKANFPE--NGAFLSPLTPPP 62
           +LKK+RTRDDM    + EEDYHTG+SASVPF+WESEPGTPKAN  +  NG+ LSPLTPPP
Sbjct: 20  RLKKLRTRDDMSRIMVEEEDYHTGLSASVPFKWESEPGTPKANLHDNNNGSLLSPLTPPP 79

Query: 63  SYFST----NPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSXXXXXXXX 122
           SYFS     N +  + L+S  +F++ S LN VFR LS+K +LQP        XXXXXXXX
Sbjct: 80  SYFSNHLIINSSPIIHLSSKPSFNKPSCLNTVFRMLSVKPTLQPXXXXXXXXXXXXXXXX 139

Query: 123 XRGTPGSPRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK 172
           X                          VESPVSTL FG G++KGCYP LVKVFTR SK
Sbjct: 140 XXXXXXXXXXXXXXXXXXXXXXXXXGNVESPVSTLFFGRGSEKGCYPNLVKVFTRHSK 197

[Close]

BLAST of Carg26960 vs. NCBI nr
Match: XP_004145232.1 (PREDICTED: uncharacterized protein LOC101203250 [Cucumis sativus] >KGN65857.1 hypothetical protein Csa_1G533640 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 94/178 (52.81%), Postives = 110/178 (61.80%), Query Frame = 0


Query: 3   KLKKVRTRDDM---WIVEEDYHTGVSASVPFQWESEPGTPKANFPENG--AFLSPLTPPP 62
           +LKK+R R+DM    + EEDYHTG+SASVPFQWESEPGTPKAN  +    + LSPLTPPP
Sbjct: 20  RLKKLRKREDMSTIMVEEEDYHTGLSASVPFQWESEPGTPKANLNDRNSRSLLSPLTPPP 79

Query: 63  SYFST----NPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSXXXXXXXX 122
           SYFS     N +  + L+S  +F++ SFLN VFRKLS+K S           XXXXXXXX
Sbjct: 80  SYFSNHLIINSSPMIHLSSKPSFNKPSFLNTVFRKLSVKPSTLQPXXXXXXXXXXXXXXX 139

Query: 123 XRGTPGSPRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK 172
           X                          +ESPVSTL FG  +DKGCYPKLVKVFTR SK
Sbjct: 140 XXXXXXXXXXXXXXXXXXXXXXXXXGNLESPVSTLFFGRRSDKGCYPKLVKVFTRYSK 197

[Close]

BLAST of Carg26960 vs. TAIR10
Match: AT1G06930.1 (unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 5.9e-09
Identity = 57/171 (33.33%), Postives = 73/171 (42.69%), Query Frame = 0


Query: 16  VEEDYHTGVSASVPFQWESEPGTPKA----------------NFPENGAFLSPLTPPPSY 75
           VE DY+ G SA+VPF+WES+PGTP+                 NFP +    +PLTPPPSY
Sbjct: 20  VEGDYYGGSSAAVPFKWESQPGTPRRLSKRSSSSGFNSDSDFNFPVS----APLTPPPSY 79

Query: 76  FSTNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSXXXXXXXXXRGTPG 135
           F  +P+S   ++  KT       N +F  L  K    P            XXXXX     
Sbjct: 80  FYASPSSTKHVSPKKT-------NTLFSSLLSKNRSVP------------XXXXXXXXXX 139

Query: 136 SPRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDK--GCYPKLVKVFTR 169
                    R  D +           S+L +G  + K  GCY  LVKV  R
Sbjct: 140 XXXXXXXXXRTSDLSNRRRSMWFESGSSLDYGSNSAKSSGCYASLVKVLLR 167

[Close]

BLAST of Carg26960 vs. TAIR10
Match: AT3G56260.2 (unknown protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.5e-07
Identity = 27/55 (49.09%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 8  RTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYFST 63
          R  DD  I EE       AS+PF WES PGTPK +   + +   PLTPPPSY+S+
Sbjct: 4  RLEDDFAIDEERSSYYGGASIPFIWESRPGTPKNHLCSDSSLPLPLTPPPSYYSS 58

[Close]

BLAST of Carg26960 vs. TAIR10
Match: AT5G01790.1 (unknown protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.6e-06
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 20  YHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYFS 62
           Y+ G + +VPF+WES PGTPK    E    L PLTPPPS+FS
Sbjct: 67  YYDGAAGAVPFEWESHPGTPKHPSSELPT-LPPLTPPPSHFS 107

[Close]

BLAST of Carg26960 vs. TrEMBL
Match: tr|A0A1S3C5A7|A0A1S3C5A7_CUCME (uncharacterized protein At4g00950 OS=Cucumis melo OX=3656 GN=LOC103497034 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.3e-33
Identity = 97/178 (54.49%), Postives = 114/178 (64.04%), Query Frame = 0


Query: 3   KLKKVRTRDDM---WIVEEDYHTGVSASVPFQWESEPGTPKANFPE--NGAFLSPLTPPP 62
           +LKK+RTRDDM    + EEDYHTG+SASVPF+WESEPGTPKAN  +  NG+ LSPLTPPP
Sbjct: 20  RLKKLRTRDDMSRIMVEEEDYHTGLSASVPFKWESEPGTPKANLHDNNNGSLLSPLTPPP 79

Query: 63  SYFST----NPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSXXXXXXXX 122
           SYFS     N +  + L+S  +F++ S LN VFR LS+K +LQP        XXXXXXXX
Sbjct: 80  SYFSNHLIINSSPIIHLSSKPSFNKPSCLNTVFRMLSVKPTLQPXXXXXXXXXXXXXXXX 139

Query: 123 XRGTPGSPRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK 172
           X                          VESPVSTL FG G++KGCYP LVKVFTR SK
Sbjct: 140 XXXXXXXXXXXXXXXXXXXXXXXXXGNVESPVSTLFFGRGSEKGCYPNLVKVFTRHSK 197

[Close]

BLAST of Carg26960 vs. TrEMBL
Match: tr|A0A0A0LYC9|A0A0A0LYC9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533640 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.4e-30
Identity = 94/178 (52.81%), Postives = 110/178 (61.80%), Query Frame = 0


Query: 3   KLKKVRTRDDM---WIVEEDYHTGVSASVPFQWESEPGTPKANFPENG--AFLSPLTPPP 62
           +LKK+R R+DM    + EEDYHTG+SASVPFQWESEPGTPKAN  +    + LSPLTPPP
Sbjct: 20  RLKKLRKREDMSTIMVEEEDYHTGLSASVPFQWESEPGTPKANLNDRNSRSLLSPLTPPP 79

Query: 63  SYFST----NPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSXXXXXXXX 122
           SYFS     N +  + L+S  +F++ SFLN VFRKLS+K S           XXXXXXXX
Sbjct: 80  SYFSNHLIINSSPMIHLSSKPSFNKPSFLNTVFRKLSVKPSTLQPXXXXXXXXXXXXXXX 139

Query: 123 XRGTPGSPRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK 172
           X                          +ESPVSTL FG  +DKGCYPKLVKVFTR SK
Sbjct: 140 XXXXXXXXXXXXXXXXXXXXXXXXXGNLESPVSTLFFGRRSDKGCYPKLVKVFTRYSK 197

[Close]

BLAST of Carg26960 vs. TrEMBL
Match: tr|B9INP2|B9INP2_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G127400v3 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.3e-15
Identity = 68/180 (37.78%), Postives = 83/180 (46.11%), Query Frame = 0


Query: 18  EDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYFSTNPNSPLGLNSSKTFH 77
           EDYH G S +VPF WES+PGTPK  F EN   L PLTPPPSY   NP  P     +K   
Sbjct: 39  EDYHVGASVAVPFTWESQPGTPKIKFRENP--LPPLTPPPSYSYNNPKRP-----TKKLS 98

Query: 78  RASFLNNVFRKLSMKASLQPRSP--------------------GSMLSXXXXXXXXXRGT 137
           + + L+++F K S + +  P SP                        +          G 
Sbjct: 99  KYNLLDSIFPKRSTRKANLPVSPXXXXXXXXXXXXXXXXXXXXXXXXTKVSKSRGSCHGK 158

Query: 138 PGSPRRLSFDSRV-------DDDNGNEEETVESPVSTLSFGHG-----NDKGCYPKLVKV 166
             SPR+  FDSR        D D GNE    ESPVSTL FG G       +GCY  ++KV
Sbjct: 159 SSSPRQY-FDSRKTMLDHLDDQDRGNE---CESPVSTLRFGLGRGSSAGSRGCYASMIKV 207

[Close]

BLAST of Carg26960 vs. TrEMBL
Match: tr|A0A2K1WT96|A0A2K1WT96_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G127400v3 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.7e-15
Identity = 67/179 (37.43%), Postives = 82/179 (45.81%), Query Frame = 0


Query: 18  EDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYFSTNPNSPLGLNSSKTFH 77
           EDYH G S +VPF WES+PGTPK  F EN   L PLTPPPSY   NP  P     +K   
Sbjct: 39  EDYHVGASVAVPFTWESQPGTPKIKFRENP--LPPLTPPPSYSYNNPKRP-----TKKLS 98

Query: 78  RASFLNNVFRKLSMKASLQPRSP--------------------GSMLSXXXXXXXXXRGT 137
           + + L+++F K S + +  P SP                        +          G 
Sbjct: 99  KYNLLDSIFPKRSTRKANLPVSPXXXXXXXXXXXXXXXXXXXXXXXXTKVSKSRGSCHGK 158

Query: 138 PGSPRRLSFDSRV-------DDDNGNEEETVESPVSTLSFGHG-----NDKGCYPKLVK 165
             SPR+  FDSR        D D GNE    ESPVSTL FG G       +GCY  ++K
Sbjct: 159 SSSPRQY-FDSRKTMLDHLDDQDRGNE---CESPVSTLRFGLGRGSSAGSRGCYASMIK 206

[Close]

BLAST of Carg26960 vs. TrEMBL
Match: tr|A0A2R6PPN8|A0A2R6PPN8_ACTCH (Elongation factor G like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc25780 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.8e-13
Identity = 65/171 (38.01%), Postives = 81/171 (47.37%), Query Frame = 0


Query: 18  EDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPS-YFSTNPNSPLGLNSSKTF 77
           E Y+ G S SVPF WES+PGTPK  F EN   L PLTPPPS +FS+  N     + S  F
Sbjct: 31  EVYYGGASISVPFTWESQPGTPKVKFRENP--LPPLTPPPSCHFSSTKNPTKRPSKSNLF 90

Query: 78  HRASFLNNVFRKLSMKASLQPRSPGSMLSXXXXXXXXXRGTPGSP--------------R 137
           H       V  KL+++ +  P SP S LS            P SP               
Sbjct: 91  HA------VLPKLNLRRTSPPPSPASSLSSSSFWSPSC-SVPSSPFTPPNIRGRVHLSSA 150

Query: 138 RLSFDSRVDDDNGNEEETVESPVSTLSFG-----HGNDKGCYPKLVKVFTR 169
           R +FDSRV     +EE+   SP S L FG     +G  +GC   ++KV  R
Sbjct: 151 RSTFDSRV-----HEEDEYGSPASALCFGTARGTNGRSRGCSSNVIKVLLR 187

The following BLAST results are available for this feature:

BLAST of Carg26960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964745.1	2.1e-84	96.49	uncharacterized protein LOC111464733 [Cucurbita moschata]	[more]
XP_023519368.1	1.0e-83	95.91	uncharacterized protein LOC111782803 [Cucurbita pepo subsp. pepo]	[more]
XP_022970378.1	1.6e-81	95.35	uncharacterized protein LOC111469381 [Cucurbita maxima]	[more]
XP_008457312.1	1.4e-32	54.49	PREDICTED: uncharacterized protein At4g00950 [Cucumis melo]	[more]
XP_004145232.1	1.1e-29	52.81	PREDICTED: uncharacterized protein LOC101203250 [Cucumis sativus] >KGN65857.1 hy...	[more]

BLAST of Carg26960 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G06930.1	5.9e-09	33.33	unknown protein	[more]
AT3G56260.2	1.5e-07	49.09	unknown protein	[more]
AT5G01790.1	1.6e-06	57.14	unknown protein	[more]

BLAST of Carg26960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26960 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C5A7\|A0A1S3C5A7_CUCME	9.3e-33	54.49	uncharacterized protein At4g00950 OS=Cucumis melo OX=3656 GN=LOC103497034 PE=4 S...	[more]
tr\|A0A0A0LYC9\|A0A0A0LYC9_CUCSA	7.4e-30	52.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533640 PE=4 SV=1	[more]
tr\|B9INP2\|B9INP2_POPTR	2.3e-15	37.78	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G127400v3 PE=...	[more]
tr\|A0A2K1WT96\|A0A2K1WT96_POPTR	6.7e-15	37.43	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G127400v3 PE=...	[more]
tr\|A0A2R6PPN8\|A0A2R6PPN8_ACTCH	2.8e-13	38.01	Elongation factor G like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007789	DUF688

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26960-RA	Carg26960-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007789	Protein of unknown function DUF688	PFAM	PF05097	DUF688	coord: 26..149 e-value: 6.2E-6 score: 25.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..118
None	No IPR available	PANTHER	PTHR33257:SF10	SUBFAMILY NOT NAMED	coord: 118..166
None	No IPR available	PANTHER	PTHR33257:SF10	SUBFAMILY NOT NAMED	coord: 16..112
None	No IPR available	PANTHER	PTHR33257	FAMILY NOT NAMED	coord: 118..166
None	No IPR available	PANTHER	PTHR33257	FAMILY NOT NAMED	coord: 16..112

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26960	Cla008115	Watermelon (97103) v1	carwmB0319
Carg26960	Csa1G533640	Cucumber (Chinese Long) v2	carcuB0358
Carg26960	MELO3C020502	Melon (DHL92) v3.5.1	carmeB0335
Carg26960	ClCG03G000230	Watermelon (Charleston Gray)	carwcgB0321
Carg26960	CSPI01G24380	Wild cucumber (PI 183967)	carcpiB0362
Carg26960	CmaCh01G007220	Cucurbita maxima (Rimu)	carcmaB0463
Carg26960	CmaCh13G000180	Cucurbita maxima (Rimu)	carcmaB0462
Carg26960	CmoCh01G007500	Cucurbita moschata (Rifu)	carcmoB0454
Carg26960	CmoCh13G000100	Cucurbita moschata (Rifu)	carcmoB0453
Carg26960	Lsi02G012280	Bottle gourd (USVL1VR-Ls)	carlsiB302
Carg26960	Cp4.1LG20g07690	Cucurbita pepo (Zucchini)	carcpeB0459
Carg26960	Cp4.1LG02g11230	Cucurbita pepo (Zucchini)	carcpeB0460
Carg26960	MELO3C020502.2	Melon (DHL92) v3.6.1	carmedB0343
Carg26960	CsaV3_1G036680	Cucumber (Chinese Long) v3	carcucB0362
Carg26960	Cla97C03G051040	Watermelon (97103) v2	carwmbB0338
Carg26960	Bhi08G000364	Wax gourd	carwgoB0414

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg26960	Carg07023	Silver-seed gourd	carcarB350

The following block(s) are covering this gene:

None