Carg26812 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26812
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ATP-dependent Clp protease ATP-binding subunit
Location	Cucurbita_argyrosperma_scaffold_340 : 80341 .. 81515 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTTCATGTTTGTCATTGGTCCAGAAACAAATGTTTTGGTGATGGAAGATAAATGTAACTAAAATAGGGGCGTGAAGGCCAAGTTTCTCAGATCAGATAGCTACAAGATAAAGGATAAGGGATAAGTGATTAGAACCACACAAATTCAAGACGGCCTCGTAGAACATTATGCTTTGATTTCATGGACAATTCGGATATTCTTTAACAGAAACAGAGCTGGTTTCAAAGGAAGAAAAAGGAGATTACCCCAAATGGGTTGTAAGCTAAACACCCCCAACGCTCCATTTCTCTTCAAATTCCCCACAAAAAGCCCAAAACTTGGAGGGAAAACCTTCACTTTCTGTCCTAATTTCTGTCTCAGCAGTCAAAACCAAGAAACACCCACCATTTCCACCGCCAAAACCCCTCAAACCCAGGTCCCAAAATCTAATTTTTCCACCGTTAATTTCAAGTCTCTCACAGCCTGTAAGCTTGGCATCTCCAGATACCCTGATTTTGAATACAACGCTGAAGGAGGAACAGGAACTGGGTCCGCCAAGATCGACGGCGACGGTGGCAGCGGCGAAGTTTCAGTTTCATTCGATGTGGGCACCCTCTATATCCCGCCATTGACATCTCAAACCACAAAGTTTCTTGGTCTTCCATTGCCACCGTTTCTGAAGATCGACATCGTCCCAGAACTCTTCCACGGGAACATCAATCAAGAATCCGGCAAGGTAATGTCTGAGAAAAGTCCTACCCATCCGAACAAAATCCTCCAATACAAAAATATTGATATGCTATATGTGGAAATTTTGATGCAGATTGAGCTAGAATTCAAGGCAAAGTTCCTATTCTCAGTTGGGAATGTGTATAAAGCTCCTCCATTGCTGGTAAAAACAGTGCTGACATCTGAGGAATCAAAAGGAAGCATAAGAAGTGGAAAAGGTGAAAGATTAGATGAAAAGGGGAAGTGCAGATTGGTGGGGGTAGCCATTGTTGACCCCATTGATGATCTGCTTCTCAACTCCTTCCTCTCTCTCCCCACTGAATGCATTGCAAAACTCAATGCCATAATCACGTTCTCTTAGACACACAAAGAAGAAACTGCAATTTTTGTTTGGGACAAAACCAGACACATACATATTGAAACCAACAATTTTAATGCATAGGTACTTGTTCTGTTCTTCCGTCA

mRNA sequence

GTGTTCATGTTTGTCATTGGTCCAGAAACAAATGTTTTGGTGATGGAAGATAAATGTAACTAAAATAGGGGCGTGAAGGCCAAGTTTCTCAGATCAGATAGCTACAAGATAAAGGATAAGGGATAAGTGATTAGAACCACACAAATTCAAGACGGCCTCGTAGAACATTATGCTTTGATTTCATGGACAATTCGGATATTCTTTAACAGAAACAGAGCTGGTTTCAAAGGAAGAAAAAGGAGATTACCCCAAATGGGTTGTAAGCTAAACACCCCCAACGCTCCATTTCTCTTCAAATTCCCCACAAAAAGCCCAAAACTTGGAGGGAAAACCTTCACTTTCTGTCCTAATTTCTGTCTCAGCAGTCAAAACCAAGAAACACCCACCATTTCCACCGCCAAAACCCCTCAAACCCAGGTCCCAAAATCTAATTTTTCCACCGTTAATTTCAAGTCTCTCACAGCCTGTAAGCTTGGCATCTCCAGATACCCTGATTTTGAATACAACGCTGAAGGAGGAACAGGAACTGGGTCCGCCAAGATCGACGGCGACGGTGGCAGCGGCGAAGTTTCAGTTTCATTCGATGTGGGCACCCTCTATATCCCGCCATTGACATCTCAAACCACAAAGTTTCTTGGTCTTCCATTGCCACCGTTTCTGAAGATCGACATCGTCCCAGAACTCTTCCACGGGAACATCAATCAAGAATCCGGCAAGATTGAGCTAGAATTCAAGGCAAAGTTCCTATTCTCAGTTGGGAATGTGTATAAAGCTCCTCCATTGCTGGTAAAAACAGTGCTGACATCTGAGGAATCAAAAGGAAGCATAAGAAGTGGAAAAGGTGAAAGATTAGATGAAAAGGGGAAGTGCAGATTGGTGGGGGTAGCCATTGTTGACCCCATTGATGATCTGCTTCTCAACTCCTTCCTCTCTCTCCCCACTGAATGCATTGCAAAACTCAATGCCATAATCACGTTCTCTTAGACACACAAAGAAGAAACTGCAATTTTTGTTTGGGACAAAACCAGACACATACATATTGAAACCAACAATTTTAATGCATAGGTACTTGTTCTGTTCTTCCGTCA

Coding sequence (CDS)

ATGGGTTGTAAGCTAAACACCCCCAACGCTCCATTTCTCTTCAAATTCCCCACAAAAAGCCCAAAACTTGGAGGGAAAACCTTCACTTTCTGTCCTAATTTCTGTCTCAGCAGTCAAAACCAAGAAACACCCACCATTTCCACCGCCAAAACCCCTCAAACCCAGGTCCCAAAATCTAATTTTTCCACCGTTAATTTCAAGTCTCTCACAGCCTGTAAGCTTGGCATCTCCAGATACCCTGATTTTGAATACAACGCTGAAGGAGGAACAGGAACTGGGTCCGCCAAGATCGACGGCGACGGTGGCAGCGGCGAAGTTTCAGTTTCATTCGATGTGGGCACCCTCTATATCCCGCCATTGACATCTCAAACCACAAAGTTTCTTGGTCTTCCATTGCCACCGTTTCTGAAGATCGACATCGTCCCAGAACTCTTCCACGGGAACATCAATCAAGAATCCGGCAAGATTGAGCTAGAATTCAAGGCAAAGTTCCTATTCTCAGTTGGGAATGTGTATAAAGCTCCTCCATTGCTGGTAAAAACAGTGCTGACATCTGAGGAATCAAAAGGAAGCATAAGAAGTGGAAAAGGTGAAAGATTAGATGAAAAGGGGAAGTGCAGATTGGTGGGGGTAGCCATTGTTGACCCCATTGATGATCTGCTTCTCAACTCCTTCCTCTCTCTCCCCACTGAATGCATTGCAAAACTCAATGCCATAATCACGTTCTCTTAG

Protein sequence

MGCKLNTPNAPFLFKFPTKSPKLGGKTFTFCPNFCLSSQNQETPTISTAKTPQTQVPKSNFSTVNFKSLTACKLGISRYPDFEYNAEGGTGTGSAKIDGDGGSGEVSVSFDVGTLYIPPLTSQTTKFLGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLVKTVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAIITFS

Homology

[Close]

BLAST of Carg26812 vs. NCBI nr
Match: XP_022945057.1 (uncharacterized protein LOC111449415 [Cucurbita moschata])

HSP 1 Score: 441.4 bits (1134), Expect = 2.0e-120
Identity = 239/243 (98.35%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MGCKLNTPNAPFLFKFPTKSPKLGGKTFTFCPNFCLSSQNQETPTISTAKTPQTQVPKSN 60
           MGCKLNTPNAPFLFKFPTKSPKLGGKTFTFCPNFCLSSQ+QETPTISTAKTPQTQ+PKSN
Sbjct: 1   MGCKLNTPNAPFLFKFPTKSPKLGGKTFTFCPNFCLSSQSQETPTISTAKTPQTQIPKSN 60

Query: 61  FSTVNFKSLTACKLGISRYPDFEYNAEGGTXXXXXXXXXXXXXXXXXXXFDVGTLYIPPL 120
           FSTVNFKSLTACKLGISRYPDFEYNAEGGTXXXXXXXXXXXXXXXXXXXFD+GTLYIPPL
Sbjct: 61  FSTVNFKSLTACKLGISRYPDFEYNAEGGTXXXXXXXXXXXXXXXXXXXFDLGTLYIPPL 120

Query: 121 TSQTTKFLGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLVK 180
           T+QTTKFLGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLVK
Sbjct: 121 TTQTTKFLGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLVK 180

Query: 181 TVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAII 240
           TVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAII
Sbjct: 181 TVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAII 240

Query: 241 TFS 244
           TFS
Sbjct: 241 TFS 243

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BLAST of Carg26812 vs. NCBI nr
Match: XP_023541386.1 (uncharacterized protein LOC111801589 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 441.4 bits (1134), Expect = 2.0e-120
Identity = 239/243 (98.35%), Postives = 242/243 (99.59%), Query Frame = 0


Query: 1   MGCKLNTPNAPFLFKFPTKSPKLGGKTFTFCPNFCLSSQNQETPTISTAKTPQTQVPKSN 60
           MGCKLNTPNAPFLFKFPTKSPKLGGKTFTFCPNFCLSSQNQETPTISTAKTPQTQ+PKSN
Sbjct: 1   MGCKLNTPNAPFLFKFPTKSPKLGGKTFTFCPNFCLSSQNQETPTISTAKTPQTQIPKSN 60

Query: 61  FSTVNFKSLTACKLGISRYPDFEYNAEGGTXXXXXXXXXXXXXXXXXXXFDVGTLYIPPL 120
           FSTVNFKSLTACKLGISRYPDFEYNAEGGTXXXXXXXXXXXXXXXXXXXFDVGTLYIPPL
Sbjct: 61  FSTVNFKSLTACKLGISRYPDFEYNAEGGTXXXXXXXXXXXXXXXXXXXFDVGTLYIPPL 120

Query: 121 TSQTTKFLGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLVK 180
           T+QTTKF GLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLV+
Sbjct: 121 TTQTTKFFGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLVE 180

Query: 181 TVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAII 240
           TVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAII
Sbjct: 181 TVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAII 240

Query: 241 TFS 244
           TFS
Sbjct: 241 TFS 243

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BLAST of Carg26812 vs. NCBI nr
Match: XP_022968031.1 (uncharacterized protein LOC111467398 [Cucurbita maxima])

HSP 1 Score: 437.6 bits (1124), Expect = 2.8e-119
Identity = 238/243 (97.94%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MGCKLNTPNAPFLFKFPTKSPKLGGKTFTFCPNFCLSSQNQETPTISTAKTPQTQVPKSN 60
           MGCKLNTPNAP LFKFPTKSPKLGGKTFT CPNFCLSSQNQETPTISTAKTPQTQ+PKSN
Sbjct: 1   MGCKLNTPNAPVLFKFPTKSPKLGGKTFTLCPNFCLSSQNQETPTISTAKTPQTQIPKSN 60

Query: 61  FSTVNFKSLTACKLGISRYPDFEYNAEGGTXXXXXXXXXXXXXXXXXXXFDVGTLYIPPL 120
           FSTV+FKSLTACKLGISRYPDFEYNAEGGTXXXXXXXXXXXXXXXXXXXFDVGTLYIPPL
Sbjct: 61  FSTVHFKSLTACKLGISRYPDFEYNAEGGTXXXXXXXXXXXXXXXXXXXFDVGTLYIPPL 120

Query: 121 TSQTTKFLGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLVK 180
           T+QTTKFLGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLVK
Sbjct: 121 TTQTTKFLGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLVK 180

Query: 181 TVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAII 240
           TVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAII
Sbjct: 181 TVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAII 240

Query: 241 TFS 244
           TFS
Sbjct: 241 TFS 243

[Close]

BLAST of Carg26812 vs. NCBI nr
Match: XP_022140932.1 (uncharacterized protein LOC111011473 [Momordica charantia])

HSP 1 Score: 365.5 bits (937), Expect = 1.4e-97
Identity = 181/243 (74.49%), Postives = 203/243 (83.54%), Query Frame = 0


Query: 1   MGCKLNTPNAPFLFKFPTKSPKLGGKTFTFCPNFCLSSQNQETPTISTAKTPQTQVPKSN 60
           MGCK+NTPN   LFKFPTK  +LGGK+ TFCP F + SQNQ+ PTIST  T QTQ+PKS 
Sbjct: 1   MGCKINTPNTQILFKFPTKRAELGGKSTTFCPTFSIHSQNQDAPTISTTTTNQTQIPKSE 60

Query: 61  FSTVNFKSLTACKLGISRYPDFEYNAEGGTXXXXXXXXXXXXXXXXXXXFDVGTLYIPPL 120
            ST++FK+L ACKLGISRYPDFEYNAEGGT                   FDVGTLYIPPL
Sbjct: 61  ISTLHFKTLRACKLGISRYPDFEYNAEGGT--GTASAETDGSGDQVSVSFDVGTLYIPPL 120

Query: 121 TSQTTKFLGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLVK 180
           T++TTKFLGLPLPPFLKIDI+PE FHGNI++ESGK+ELEFKAKF+FSVG++YKAPPLLVK
Sbjct: 121 TTETTKFLGLPLPPFLKIDILPEFFHGNISKESGKVELEFKAKFIFSVGSIYKAPPLLVK 180

Query: 181 TVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAII 240
           TVLTSEES+GSIR GKGERLD++GKCRLVGVA VDPIDD LLNSFLSLPTECIA LNAII
Sbjct: 181 TVLTSEESEGSIRRGKGERLDKEGKCRLVGVATVDPIDDFLLNSFLSLPTECIAILNAII 240

Query: 241 TFS 244
           +FS
Sbjct: 241 SFS 241

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BLAST of Carg26812 vs. NCBI nr
Match: XP_004140796.1 (PREDICTED: uncharacterized protein LOC101221214 [Cucumis sativus] >KGN57335.1 hypothetical protein Csa_3G180240 [Cucumis sativus])

HSP 1 Score: 347.4 bits (890), Expect = 3.8e-92
Identity = 174/244 (71.31%), Postives = 197/244 (80.74%), Query Frame = 0


Query: 1   MGCKLNTPNAPFLFKFPTKSPKLGGKTFTFCPNFCLSSQNQETPTISTAKTPQTQVPKSN 60
           MGCKLN+PN P LFKF TK   LGGK+  F P  CL+SQNQETPTI T     T++PKSN
Sbjct: 1   MGCKLNSPNTPILFKFSTKRSNLGGKSIKFSPTSCLNSQNQETPTIPTT----TKIPKSN 60

Query: 61  FSTVNFKSLTACKLGISRYPDFEYNAEGGT-XXXXXXXXXXXXXXXXXXXFDVGTLYIPP 120
            STV+FKSLTACKLGISR+PDF+YNAEGGT                    FDV TLYIPP
Sbjct: 61  ISTVHFKSLTACKLGISRFPDFQYNAEGGTGTGSVKIHDDNGSNSRLLVSFDVDTLYIPP 120

Query: 121 LTSQTTKFLGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLV 180
           LT+QTTKFLGLPLPPFLKID++PE F G+INQESGK+ELEF++KF+FS+G++Y+APPLLV
Sbjct: 121 LTTQTTKFLGLPLPPFLKIDVLPEFFQGSINQESGKVELEFESKFIFSIGSLYRAPPLLV 180

Query: 181 KTVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAI 240
           KTVL+SEES+G IRSGKGERLD+ G CRLVGVA VDPIDDL LNSFLSLPTECIA LNAI
Sbjct: 181 KTVLSSEESRGIIRSGKGERLDDDGNCRLVGVATVDPIDDLFLNSFLSLPTECIANLNAI 240

Query: 241 ITFS 244
           ITFS
Sbjct: 241 ITFS 240

[Close]

BLAST of Carg26812 vs. TAIR10
Match: AT5G62140.1 (unknown protein)

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-57
Identity = 124/213 (58.22%), Postives = 150/213 (70.42%), Query Frame = 0


Query: 38  SQNQETPTISTAKTPQ---TQVPKSNFSTVNFKSLTACKLGISRYPDFEYNAEGGT---X 97
           SQNQ    IS +  P+   TQ+P + +S V+FK++   KLGISRYPDFEY+  GG+    
Sbjct: 27  SQNQ-IKLISNSLNPKPNTTQLPNTLYS-VSFKTIGTGKLGISRYPDFEYSPLGGSGAGT 86

Query: 98  XXXXXXXXXXXXXXXXXXFDVGTLYIPPLTSQTTKFLGLPLPPFLKIDIVPELFHGNINQ 157
                             F+V TLYIP LTSQTTKFLG PLPPFLKIDI PE+F G INQ
Sbjct: 87  AKKIDDKNRASNSELSVCFNVATLYIPSLTSQTTKFLGFPLPPFLKIDISPEIFQGTINQ 146

Query: 158 ESGKIELEFKAKFLFSV-GNVYKAPPLLVKTVLTSEESKGSIRSGKGERLDEKGKCRLVG 217
           ESGK+ELEF AKF F+  G +Y+AP L+V+TVLT+EES G  + GKGERLDE+GKCRLVG
Sbjct: 147 ESGKVELEFMAKFFFTAGGGIYRAPALVVRTVLTTEESIGENKRGKGERLDEEGKCRLVG 206

Query: 218 VAIVDPIDDLLLNSFLSLPTECIAKLNAIITFS 244
           VA V+ IDDL +N+FLSLP EC+A L AII+ S
Sbjct: 207 VAKVETIDDLFMNTFLSLPAECLADLQAIISVS 237

[Close]

BLAST of Carg26812 vs. TrEMBL
Match: tr|A0A0A0L5S5|A0A0A0L5S5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180240 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 2.5e-92
Identity = 174/244 (71.31%), Postives = 197/244 (80.74%), Query Frame = 0


Query: 1   MGCKLNTPNAPFLFKFPTKSPKLGGKTFTFCPNFCLSSQNQETPTISTAKTPQTQVPKSN 60
           MGCKLN+PN P LFKF TK   LGGK+  F P  CL+SQNQETPTI T     T++PKSN
Sbjct: 1   MGCKLNSPNTPILFKFSTKRSNLGGKSIKFSPTSCLNSQNQETPTIPTT----TKIPKSN 60

Query: 61  FSTVNFKSLTACKLGISRYPDFEYNAEGGT-XXXXXXXXXXXXXXXXXXXFDVGTLYIPP 120
            STV+FKSLTACKLGISR+PDF+YNAEGGT                    FDV TLYIPP
Sbjct: 61  ISTVHFKSLTACKLGISRFPDFQYNAEGGTGTGSVKIHDDNGSNSRLLVSFDVDTLYIPP 120

Query: 121 LTSQTTKFLGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLV 180
           LT+QTTKFLGLPLPPFLKID++PE F G+INQESGK+ELEF++KF+FS+G++Y+APPLLV
Sbjct: 121 LTTQTTKFLGLPLPPFLKIDVLPEFFQGSINQESGKVELEFESKFIFSIGSLYRAPPLLV 180

Query: 181 KTVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAI 240
           KTVL+SEES+G IRSGKGERLD+ G CRLVGVA VDPIDDL LNSFLSLPTECIA LNAI
Sbjct: 181 KTVLSSEESRGIIRSGKGERLDDDGNCRLVGVATVDPIDDLFLNSFLSLPTECIANLNAI 240

Query: 241 ITFS 244
           ITFS
Sbjct: 241 ITFS 240

[Close]

BLAST of Carg26812 vs. TrEMBL
Match: tr|A0A1S3AYS2|A0A1S3AYS2_CUCME (uncharacterized protein LOC103484039 OS=Cucumis melo OX=3656 GN=LOC103484039 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 3.3e-92
Identity = 175/244 (71.72%), Postives = 196/244 (80.33%), Query Frame = 0


Query: 1   MGCKLNTPNAPFLFKFPTKSPKLGGKTFTFCPNFCLSSQNQETPTISTAKTPQTQVPKSN 60
           MGCKLN+PN P LFKF TK  KLGGK+  F P  CL++QNQETP         T++PKSN
Sbjct: 1   MGCKLNSPNTPILFKFATKRSKLGGKSINFSPTSCLNNQNQETP---------TKIPKSN 60

Query: 61  FSTVNFKSLTACKLGISRYPDFEYNAEGGT-XXXXXXXXXXXXXXXXXXXFDVGTLYIPP 120
            STV+FKSLTACKLGISR+PDF YNAEGGT                    FDV TLYIPP
Sbjct: 61  ISTVHFKSLTACKLGISRFPDFRYNAEGGTGTGSVKIHDDNSSSSRLLVSFDVDTLYIPP 120

Query: 121 LTSQTTKFLGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLV 180
           LT+QTTKFLGLPLPPFLKIDI+PE F G+INQESGK+ELEF++KF+FS+G++YKAPPLLV
Sbjct: 121 LTTQTTKFLGLPLPPFLKIDILPEFFQGSINQESGKVELEFESKFIFSIGSLYKAPPLLV 180

Query: 181 KTVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAI 240
           KTVL+SEES+G IRSGKGERLD+KGKCRLVGVA VDPIDDL LNSFLSLPTECIA LNAI
Sbjct: 181 KTVLSSEESRGIIRSGKGERLDDKGKCRLVGVATVDPIDDLFLNSFLSLPTECIANLNAI 235

Query: 241 ITFS 244
           ITFS
Sbjct: 241 ITFS 235

[Close]

BLAST of Carg26812 vs. TrEMBL
Match: tr|A0A061G7Q6|A0A061G7Q6_THECC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Theobroma cacao OX=3641 GN=TCM_015079 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.3e-75
Identity = 152/243 (62.55%), Postives = 180/243 (74.07%), Query Frame = 0


Query: 1   MGCKLNTPNAPFLFKFPTKSPKLGGKTFTFCPNFCLSSQNQETPTISTAKTPQTQVPKSN 60
           MGCKLN+   P L + P + P+   +   F      S    +   +ST K+ +TQ+PK++
Sbjct: 1   MGCKLNSLEPPILCQVPARKPRFRTRLIAFS-----SYAPNKGEAVSTTKSIETQLPKTD 60

Query: 61  FSTVNFKSLTACKLGISRYPDFEYNAEGGTXXXXXXXXXXXXXXXXXXXFDVGTLYIPPL 120
             +++FK+L ACKLGISRYPDFEYNAEGG     XXX            FD+ TLY+PPL
Sbjct: 61  VYSISFKTLGACKLGISRYPDFEYNAEGGA--GTXXXTKINDRNELSVSFDLKTLYVPPL 120

Query: 121 TSQTTKFLGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLVK 180
           TS TTKFLGLPLPPFLKIDIVP+LF GNINQESGK++LEF AKF FSVG++YKAPPLLVK
Sbjct: 121 TSATTKFLGLPLPPFLKIDIVPQLFQGNINQESGKVDLEFLAKFCFSVGSIYKAPPLLVK 180

Query: 181 TVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAII 240
           TVLTSEESKG IRSG+GERLD KG C+LVGVA VDPIDD  +NS L LPTEC+AKLNA+I
Sbjct: 181 TVLTSEESKGKIRSGRGERLDNKGNCKLVGVASVDPIDDFFMNSLLGLPTECLAKLNAVI 236

Query: 241 TFS 244
           T S
Sbjct: 241 TLS 236

[Close]

BLAST of Carg26812 vs. TrEMBL
Match: tr|A0A2N9FUW5|A0A2N9FUW5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18845 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 3.7e-75
Identity = 151/244 (61.89%), Postives = 181/244 (74.18%), Query Frame = 0


Query: 1   MGCKLNTPNAPFLFKFPTKSPKLGGKTFTFCPNFCLSSQNQETPTISTAKTPQTQVPKSN 60
           M CK+N+ N P L KFPTK+PKLG KT TF       S N++   IS+    Q QVP+SN
Sbjct: 1   MWCKINSSN-PVLCKFPTKNPKLGPKTITFSS----FSNNKKQEFISSTAVTQVQVPESN 60

Query: 61  FSTVNFKSLTACKLGISRYPDFEYNAEGGT-XXXXXXXXXXXXXXXXXXXFDVGTLYIPP 120
              + FK+L  CKLGISRYPDFEY+AEGG                     FD+ +LYIPP
Sbjct: 61  AYNLKFKTLGGCKLGISRYPDFEYDAEGGIGTGSGTKVPDSELNDEISVSFDIKSLYIPP 120

Query: 121 LTSQTTKFLGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPLLV 180
           LTS TTKFLGLPLPPFLKIDIVPE F G+I++ESGK++LEF AKF FSVG++Y+APPLLV
Sbjct: 121 LTSATTKFLGLPLPPFLKIDIVPEFFQGSIDRESGKVDLEFMAKFWFSVGSIYRAPPLLV 180

Query: 181 KTVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLNAI 240
           KTVLTSEES G+IRSG+G+RLD++G C LVGVA VDPIDD L+N+FL LPTEC+A LNA+
Sbjct: 181 KTVLTSEESNGTIRSGRGKRLDKEGNCSLVGVATVDPIDDFLMNTFLGLPTECLANLNAV 239

Query: 241 ITFS 244
           I+FS
Sbjct: 241 ISFS 239

[Close]

BLAST of Carg26812 vs. TrEMBL
Match: tr|V4S883|V4S883_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10005753mg PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 5.3e-74
Identity = 164/246 (66.67%), Postives = 193/246 (78.46%), Query Frame = 0


Query: 1   MGCKLNTPNAPFLFKFPTKSPKLGGKTFTFCPNFCLSSQN--QETPTISTAKTPQT-QVP 60
           MGCK+N+ N P L +F +  P    K       F LSS N  Q+ P  S   T QT ++P
Sbjct: 1   MGCKINSSNPPILCRFASTKPSQRIK------KFALSSYNPSQQDPVSSIITTQQTDRLP 60

Query: 61  KSNFSTVNFKSLTACKLGISRYPDFEYNAEGGTXXXXXXXXXXXXXXXXXXXFDVGTLYI 120
             N  TVNFK++ ACKLGISRYPDFEYNAEGG  XXXXXXXXXXX       FD+ TLYI
Sbjct: 61  --NVCTVNFKTMKACKLGISRYPDFEYNAEGG-KXXXXXXXXXXXGDEISVSFDLETLYI 120

Query: 121 PPLTSQTTKFLGLPLPPFLKIDIVPELFHGNINQESGKIELEFKAKFLFSVGNVYKAPPL 180
           PPLTS TT FLGLP+PPFLKIDIVPELF G+I+QESG+++LEF AKFLFSVG++Y+APPL
Sbjct: 121 PPLTSATTTFLGLPMPPFLKIDIVPELFQGSIDQESGRVDLEFTAKFLFSVGSIYRAPPL 180

Query: 181 LVKTVLTSEESKGSIRSGKGERLDEKGKCRLVGVAIVDPIDDLLLNSFLSLPTECIAKLN 240
           LVKTVL+SEESKG IRSG+GERLD++GKCRLVGVAIVDPIDDL +N+FL+LPTEC+A LN
Sbjct: 181 LVKTVLSSEESKGEIRSGRGERLDKEGKCRLVGVAIVDPIDDLFMNTFLALPTECLANLN 237

Query: 241 AIITFS 244
           A+I+ S
Sbjct: 241 AVISLS 237

The following BLAST results are available for this feature:

BLAST of Carg26812 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945057.1	2.0e-120	98.35	uncharacterized protein LOC111449415 [Cucurbita moschata]	[more]
XP_023541386.1	2.0e-120	98.35	uncharacterized protein LOC111801589 [Cucurbita pepo subsp. pepo]	[more]
XP_022968031.1	2.8e-119	97.94	uncharacterized protein LOC111467398 [Cucurbita maxima]	[more]
XP_022140932.1	1.4e-97	74.49	uncharacterized protein LOC111011473 [Momordica charantia]	[more]
XP_004140796.1	3.8e-92	71.31	PREDICTED: uncharacterized protein LOC101221214 [Cucumis sativus] >KGN57335.1 hy...	[more]

BLAST of Carg26812 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G62140.1	1.7e-57	58.22	unknown protein	[more]

BLAST of Carg26812 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26812 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5S5\|A0A0A0L5S5_CUCSA	2.5e-92	71.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180240 PE=4 SV=1	[more]
tr\|A0A1S3AYS2\|A0A1S3AYS2_CUCME	3.3e-92	71.72	uncharacterized protein LOC103484039 OS=Cucumis melo OX=3656 GN=LOC103484039 PE=...	[more]
tr\|A0A061G7Q6\|A0A061G7Q6_THECC	1.3e-75	62.55	ATP-dependent Clp protease ATP-binding subunit clpX OS=Theobroma cacao OX=3641 G...	[more]
tr\|A0A2N9FUW5\|A0A2N9FUW5_FAGSY	3.7e-75	61.89	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18845 PE=4 SV=1	[more]
tr\|V4S883\|V4S883_9ROSI	5.3e-74	66.67	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10005753mg PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26812-RA	Carg26812-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35320	FAMILY NOT NAMED	coord: 1..243

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26812	Cla006214	Watermelon (97103) v1	carwmB0009
Carg26812	Csa3G180240	Cucumber (Chinese Long) v2	carcuB0007
Carg26812	MELO3C006867	Melon (DHL92) v3.5.1	carmeB0005
Carg26812	ClCG05G007760	Watermelon (Charleston Gray)	carwcgB0007
Carg26812	CSPI03G16530	Wild cucumber (PI 183967)	carcpiB0007
Carg26812	Cucsa.251050	Cucumber (Gy14) v1	carcgyB0006
Carg26812	CmaCh18G012160	Cucurbita maxima (Rimu)	carcmaB0011
Carg26812	Lsi05G012680	Bottle gourd (USVL1VR-Ls)	carlsiB006
Carg26812	CsGy3G016640	Cucumber (Gy14) v2	carcgybB0006
Carg26812	MELO3C006867.2	Melon (DHL92) v3.6.1	carmedB0006
Carg26812	CsaV3_3G016740	Cucumber (Chinese Long) v3	carcucB0007
Carg26812	Cla97C05G089710	Watermelon (97103) v2	carwmbB0006

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26812	Cucurbita moschata (Rifu)	carcmoB0010
Carg26812	Cucurbita moschata (Rifu)	carcmoB0011
Carg26812	Cucurbita pepo (Zucchini)	carcpeB0008
Carg26812	Cucurbita pepo (Zucchini)	carcpeB0009
Carg26812	Wax gourd	carwgoB0008
Carg26812	Silver-seed gourd	carcarB005
Carg26812	Cucurbita maxima (Rimu)	carcmaB0010