Carg26661 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26661
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NADH-ubiquinone oxidoreductase chain 5
Location	Cucurbita_argyrosperma_scaffold_268 : 1981 .. 2711 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAGGATCCGCATAGCCCTCGATTTATGTGTTATTTATCCATTTTTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTATTTCTGGGATGGGAACGGAGTAGGTCTTGCTTCATATTTGTTAATTCATTTCTGGTTTACCCGACTTCAGGCAGATAAAGCAGCTATAAAAGCTATGCCTGTCAATCGAGTAGGTGATTTTGGATTAGCTCCTGGGATTTCGGGTCGTTTTACTCTCTTTCAAACAGTAGACTTTTCAACCATTTTTGCTCGTGCTAGTGCCCCCAGAAATTCTTGGATTTCTTGCAATATGAGATTGAATGCCATTGATTGTTATTACTTCTGCAGGAGCTACGACGTCATTCCTTGCGGCAACCATTGGAATATTACAGAACGATCTAAAGAGGGTCATAGCTTATTCAACTTGCAGTCAATTAGGCTATATGATCTTTGCTTGCGGCATCTCTAACTATTCGGTTAGCGTCTTTCACTTAATGAATCACGCGTTTTTCAAAGCATTACTATTCCTGAGTGCAGGTTCGGTGATTCATGCCATGTCGGATGAGCAAGATATGCGGAAGATGGGGGGGCTTGCCTCCTCGTTCCCTTTTACCTATGCCATGATGCTCATGGGCAGCTTATCTCTAATTGGATTTCCTTTTCTAACTGGATTTTATTCCAAAGATGTGATCTTGGAAAAGAAGGATGGATAG

mRNA sequence

ATGTCTGAGGATCCGCATAGCCCTCGATTTATGTGTTATTTATCCATTTTTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTATTTCTGGGATGGGAACGGAGTAGGTCTTGCTTCATATTTGTTAATTCATTTCTGGCAGATAAAGCAGCTATAAAAGCTATGCCTGTCAATCGAGTAGGTGATTTTGGATTAGCTCCTGGGATTTCGGGTCGTTTTACTCTCTTTCAAACAGTAGACTTTTCAACCATTTTTGCTCGTGCTAGTGCCCCCAGAAATTCTTGGATTTCTTGCAATATGAGATTGAATGCCATTGATTCTACGACTCAATTAGGCTATATGATCTTTGCTTGCGGCATCTCTAACTATTCGGTTAGCGTCTTTCACTTAATGAATCACGCGTTTTTCAAAGCATTACTATTCCTGAGTGCAGGTTCGGTGATTCATGCCATGTCGGATGAGCAAGATATGCGGAAGATGGGGGGGCTTGCCTCCTCGTTCCCTTTTACCTATGCCATGATGCTCATGGGCAGCTTATCTCTAATTGGATTTCCTTTTCTAACTGGATTTTATTCCAAAGATGTGATCTTGGAAAAGAAGGATGGATAG

Coding sequence (CDS)

ATGTCTGAGGATCCGCATAGCCCTCGATTTATGTGTTATTTATCCATTTTTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTATTTCTGGGATGGGAACGGAGTAGGTCTTGCTTCATATTTGTTAATTCATTTCTGGCAGATAAAGCAGCTATAAAAGCTATGCCTGTCAATCGAGTAGGTGATTTTGGATTAGCTCCTGGGATTTCGGGTCGTTTTACTCTCTTTCAAACAGTAGACTTTTCAACCATTTTTGCTCGTGCTAGTGCCCCCAGAAATTCTTGGATTTCTTGCAATATGAGATTGAATGCCATTGATTCTACGACTCAATTAGGCTATATGATCTTTGCTTGCGGCATCTCTAACTATTCGGTTAGCGTCTTTCACTTAATGAATCACGCGTTTTTCAAAGCATTACTATTCCTGAGTGCAGGTTCGGTGATTCATGCCATGTCGGATGAGCAAGATATGCGGAAGATGGGGGGGCTTGCCTCCTCGTTCCCTTTTACCTATGCCATGATGCTCATGGGCAGCTTATCTCTAATTGGATTTCCTTTTCTAACTGGATTTTATTCCAAAGATGTGATCTTGGAAAAGAAGGATGGATAG

Protein sequence

MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWERSRSCFIFVNSFLADKAAIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAIDSTTQLGYMIFACGISNYSVSVFHLMNHAFFKALLFLSAGSVIHAMSDEQDMRKMGGLASSFPFTYAMMLMGSLSLIGFPFLTGFYSKDVILEKKDG

Homology

[Close]

BLAST of Carg26661 vs. NCBI nr
Match: ADL63550.1 (NADH dehydrogenase subunit 5, partial (mitochondrion) [Cannabis sativa])

HSP 1 Score: 324.7 bits (831), Expect = 2.3e-85
Identity = 185/303 (61.06%), Postives = 193/303 (63.70%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWER-SRSCFIFVNSFL----ADKA 60
           MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWE    + ++ ++ +     ADKA
Sbjct: 16  MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWEGVGLASYLLIHFWFTRLQADKA 75

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI----- 120
           A KAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI     
Sbjct: 76  ATKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAITLICI 135

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 136 LLFIGAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVXAGVFMIARCSPLFEYPPTAL 195

Query: 181 ------------------------------DSTTQLGYMIFACGISNYSVSVFHLMNHAF 204
                                          + +QLGYMIFACGISNYSVSVFHLMNHAF
Sbjct: 196 IVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAF 255

[Close]

BLAST of Carg26661 vs. NCBI nr
Match: ADL63557.1 (NADH dehydrogenase subunit 5, partial (mitochondrion) [Celtis yunnanensis])

HSP 1 Score: 324.7 bits (831), Expect = 2.3e-85
Identity = 185/303 (61.06%), Postives = 193/303 (63.70%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWER-SRSCFIFVNSFL----ADKA 60
           MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWE    + ++ ++ +     ADKA
Sbjct: 9   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWEGVGLASYLLIHFWFTRLQADKA 68

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI----- 120
           A KAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI     
Sbjct: 69  ATKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAITLICI 128

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 129 LLFIGAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTAL 188

Query: 181 ------------------------------DSTTQLGYMIFACGISNYSVSVFHLMNHAF 204
                                          + +QLGYMIFACGISNYSVSVFHLMNHAF
Sbjct: 189 IVITFAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAF 248

[Close]

BLAST of Carg26661 vs. NCBI nr
Match: ADL63643.1 (NADH dehydrogenase subunit 5, partial (mitochondrion) [Melianthus major])

HSP 1 Score: 324.7 bits (831), Expect = 2.3e-85
Identity = 186/303 (61.39%), Postives = 193/303 (63.70%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWER-SRSCFIFVNSFL----ADKA 60
           MSEDPHSPRFMCYLSI TFFMPMLVTGDNSLQLFLGWE    + ++ +N +     ADKA
Sbjct: 23  MSEDPHSPRFMCYLSIPTFFMPMLVTGDNSLQLFLGWEGVGLASYLLINFWFTRLQADKA 82

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI----- 120
           AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI     
Sbjct: 83  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAITLICI 142

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 143 LLLIGAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTAL 202

Query: 181 ------------------------------DSTTQLGYMIFACGISNYSVSVFHLMNHAF 204
                                          + +QLGYMIFACGISNYSVSVFHLMNHAF
Sbjct: 203 IVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAF 262

[Close]

BLAST of Carg26661 vs. NCBI nr
Match: ADL63651.1 (NADH dehydrogenase subunit 5, partial (mitochondrion) [Morus alba])

HSP 1 Score: 324.7 bits (831), Expect = 2.3e-85
Identity = 185/303 (61.06%), Postives = 193/303 (63.70%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWER-SRSCFIFVNSFL----ADKA 60
           MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWE    + ++ ++ +     ADKA
Sbjct: 6   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWEGVGLASYLLIHFWFTRLQADKA 65

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI----- 120
           A KAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI     
Sbjct: 66  ATKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAITLICI 125

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 126 LLFIGAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTAL 185

Query: 181 ------------------------------DSTTQLGYMIFACGISNYSVSVFHLMNHAF 204
                                          + +QLGYMIFACGISNYSVSVFHLMNHAF
Sbjct: 186 IVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAF 245

[Close]

BLAST of Carg26661 vs. NCBI nr
Match: ADL63736.1 (NADH dehydrogenase subunit 5, partial (mitochondrion) [Zelkova serrata])

HSP 1 Score: 324.7 bits (831), Expect = 2.3e-85
Identity = 185/303 (61.06%), Postives = 193/303 (63.70%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWER-SRSCFIFVNSFL----ADKA 60
           MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWE    + ++ ++ +     ADKA
Sbjct: 9   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWEGVGLASYLLIHFWFTRLQADKA 68

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI----- 120
           A KAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI     
Sbjct: 69  ATKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAITLICI 128

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 129 LLFIGAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTAL 188

Query: 181 ------------------------------DSTTQLGYMIFACGISNYSVSVFHLMNHAF 204
                                          + +QLGYMIFACGISNYSVSVFHLMNHAF
Sbjct: 189 IVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAF 248

[Close]

BLAST of Carg26661 vs. TAIR10
Match: ATMG00060.1 (NADH dehydrogenase subunit 5C)

HSP 1 Score: 310.8 bits (795), Expect = 6.1e-85
Identity = 180/303 (59.41%), Postives = 189/303 (62.38%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWER-SRSCFIFVNSFL----ADKA 60
           MSEDPHSPRFMCYLSI TFFMPMLVTGDNSLQLFLGWE    + ++ ++ +     ADKA
Sbjct: 104 MSEDPHSPRFMCYLSILTFFMPMLVTGDNSLQLFLGWEGVGLASYLLIHFWFTRLQADKA 163

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI----- 120
           A KAM VNRVGDFGLA GISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI     
Sbjct: 164 ATKAMLVNRVGDFGLALGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAISLICI 223

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 224 LLLIGAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTAL 283

Query: 181 ------------------------------DSTTQLGYMIFACGISNYSVSVFHLMNHAF 204
                                          + +QLGYMIFACGISNYSVSVFHLMNHAF
Sbjct: 284 IVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAF 343

[Close]

BLAST of Carg26661 vs. TAIR10
Match: ATMG00513.1 (NADH dehydrogenase 5A)

HSP 1 Score: 310.8 bits (795), Expect = 6.1e-85
Identity = 180/303 (59.41%), Postives = 189/303 (62.38%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWER-SRSCFIFVNSFL----ADKA 60
           MSEDPHSPRFMCYLSI TFFMPMLVTGDNSLQLFLGWE    + ++ ++ +     ADKA
Sbjct: 104 MSEDPHSPRFMCYLSILTFFMPMLVTGDNSLQLFLGWEGVGLASYLLIHFWFTRLQADKA 163

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI----- 120
           A KAM VNRVGDFGLA GISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI     
Sbjct: 164 ATKAMLVNRVGDFGLALGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAISLICI 223

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 224 LLLIGAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTAL 283

Query: 181 ------------------------------DSTTQLGYMIFACGISNYSVSVFHLMNHAF 204
                                          + +QLGYMIFACGISNYSVSVFHLMNHAF
Sbjct: 284 IVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAF 343

[Close]

BLAST of Carg26661 vs. TAIR10
Match: ATMG00665.1 (NADH dehydrogenase 5B)

HSP 1 Score: 310.8 bits (795), Expect = 6.1e-85
Identity = 180/303 (59.41%), Postives = 189/303 (62.38%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWER-SRSCFIFVNSFL----ADKA 60
           MSEDPHSPRFMCYLSI TFFMPMLVTGDNSLQLFLGWE    + ++ ++ +     ADKA
Sbjct: 104 MSEDPHSPRFMCYLSILTFFMPMLVTGDNSLQLFLGWEGVGLASYLLIHFWFTRLQADKA 163

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI----- 120
           A KAM VNRVGDFGLA GISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI     
Sbjct: 164 ATKAMLVNRVGDFGLALGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAISLICI 223

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 224 LLLIGAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTAL 283

Query: 181 ------------------------------DSTTQLGYMIFACGISNYSVSVFHLMNHAF 204
                                          + +QLGYMIFACGISNYSVSVFHLMNHAF
Sbjct: 284 IVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAF 343

[Close]

BLAST of Carg26661 vs. TAIR10
Match: ATCG01010.1 (NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein)

HSP 1 Score: 99.0 bits (245), Expect = 3.7e-21
Identity = 86/307 (28.01%), Postives = 115/307 (37.46%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWERSRSCFIFVNSF-----LADKA 60
           MS D    RF  Y+  F   M  LVT  N +Q++  WE    C   +  F     +A  A
Sbjct: 115 MSHDQGYLRFFAYMGFFNTSMLGLVTSSNLIQVYFFWELVGMCSYLLIGFWFTRPIAANA 174

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIF------------------------- 120
             KA   NRVGDFGL  GI G + +  + +F  +F                         
Sbjct: 175 CQKAFVTNRVGDFGLLLGILGLYWITGSFEFQDLFEIFNNLILNNRVNLLFLTLCAFLLF 234

Query: 121 -----ARASAPRNSWISCNM---------------------------------------- 180
                  A  P + W+   M                                        
Sbjct: 235 VGPIAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPSIMYII 294

Query: 181 ----------------------RLNAIDSTTQLGYMIFACGISNYSVSVFHLMNHAFFKA 203
                                 R  A  + +QLGYM+ A G+ +Y  ++FHL+ HA+ KA
Sbjct: 295 SLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKA 354

[Close]

BLAST of Carg26661 vs. Swiss-Prot
Match: sp|P10330|NU5M_OENBE (NADH-ubiquinone oxidoreductase chain 5 OS=Oenothera berteroana OX=3950 GN=ND5 PE=2 SV=2)

HSP 1 Score: 308.1 bits (788), Expect = 7.2e-83
Identity = 180/303 (59.41%), Postives = 188/303 (62.05%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWER-SRSCFIFVNSFL----ADKA 60
           MSEDPHSPRFMCYLSIFTFFMPMLVTGDN LQLFLGWE    + ++ ++ +     ADKA
Sbjct: 104 MSEDPHSPRFMCYLSIFTFFMPMLVTGDNFLQLFLGWEGVGLASYLLIHFWFTRLQADKA 163

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI----- 120
           AIKAM VNRVGDFGLA GI G FTLFQTVDFSTIFA ASAPRNSWISCNMRLNAI     
Sbjct: 164 AIKAMLVNRVGDFGLALGILGCFTLFQTVDFSTIFACASAPRNSWISCNMRLNAITLICI 223

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 224 LLLIGAVGKSAQIGLHTWLPDAMEGPTPVSALIHAATMVTAGVFMIARCSPLFEYSPTAL 283

Query: 181 ------------------------------DSTTQLGYMIFACGISNYSVSVFHLMNHAF 204
                                          + +QLGYMIFACGISNYSVSVFHLMNHAF
Sbjct: 284 IVITFAGAMTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAF 343

[Close]

BLAST of Carg26661 vs. Swiss-Prot
Match: sp|Q37680|NU5M_WHEAT (NADH-ubiquinone oxidoreductase chain 5 OS=Triticum aestivum OX=4565 GN=ND5 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 7.4e-80
Identity = 176/303 (58.09%), Postives = 184/303 (60.73%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWER-SRSCFIFVNSFL----ADKA 60
           MSEDPHSPRFMCYLSIFTFFM MLVTGDN LQLFLGWE    + ++ ++ +     ADKA
Sbjct: 104 MSEDPHSPRFMCYLSIFTFFMLMLVTGDNFLQLFLGWEGVGLASYLLIHFWFTRLQADKA 163

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI----- 120
           AIKAM VNRVGDFGLA GI G FTLFQTVDFSTIFA ASAPRN WI CNMRLNAI     
Sbjct: 164 AIKAMLVNRVGDFGLALGIFGCFTLFQTVDFSTIFACASAPRNEWIFCNMRLNAITLICI 223

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 224 LLFIGAVGKSAQIGLHTWLPDAMEGPTPVSALIHAATMVTAGVFMIARCSPLFEYSPTAL 283

Query: 181 ------------------------------DSTTQLGYMIFACGISNYSVSVFHLMNHAF 204
                                          + +QLGYMIFACGISNYSVSVFHLMNHAF
Sbjct: 284 IVITFAGAMTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAF 343

[Close]

BLAST of Carg26661 vs. Swiss-Prot
Match: sp|P29388|NU5M_ARATH (NADH-ubiquinone oxidoreductase chain 5 OS=Arabidopsis thaliana OX=3702 GN=ND5 PE=2 SV=3)

HSP 1 Score: 296.6 bits (758), Expect = 2.2e-79
Identity = 175/303 (57.76%), Postives = 184/303 (60.73%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWER-SRSCFIFVNSFL----ADKA 60
           MSEDPHSPRFMCYLSIFTFFM MLVTGDN LQLFLGWE    + ++ ++ +     ADKA
Sbjct: 104 MSEDPHSPRFMCYLSIFTFFMLMLVTGDNFLQLFLGWEGVGLASYLLIHFWFTRLQADKA 163

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI----- 120
           AIKAM VNRVGDFGLA GI G FTLFQTVDFSTIFA AS PRNSWI CNMRLNAI     
Sbjct: 164 AIKAMLVNRVGDFGLALGILGCFTLFQTVDFSTIFACASVPRNSWIFCNMRLNAISLICI 223

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 224 LLFIGAVGKSAQIGLHTWLPDAMEGPTPVSALIHAATMVTAGVFMIARCSPLFEYSPTAL 283

Query: 181 ------------------------------DSTTQLGYMIFACGISNYSVSVFHLMNHAF 204
                                          + +QLGYMIFACGISNYSVSVFHLMNHAF
Sbjct: 284 IVITSAGAMTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAF 343

[Close]

BLAST of Carg26661 vs. Swiss-Prot
Match: sp|P26849|NU5M_MARPO (NADH-ubiquinone oxidoreductase chain 5 OS=Marchantia polymorpha OX=3197 GN=ND5 PE=3 SV=2)

HSP 1 Score: 266.9 bits (681), Expect = 1.8e-70
Identity = 162/306 (52.94%), Postives = 178/306 (58.17%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWER-SRSCFIFVNSFL----ADKA 60
           MSEDPHSPRF CYLSIFTFFM MLVTGDN +QLFLGWE    + ++ +N +     A+KA
Sbjct: 104 MSEDPHSPRFFCYLSIFTFFMLMLVTGDNFIQLFLGWEGVGLASYLLINFWFTRIQANKA 163

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASA---PRNSWISCNMRLNAI-- 120
           AIKAM +NRVGDFGLA GI G FT+FQTVDFSTIFA ASA   P + ++ CNM  +AI  
Sbjct: 164 AIKAMLINRVGDFGLALGIMGCFTIFQTVDFSTIFACASAFSEPHHYFLFCNMGFHAITV 223

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 224 ICILVFIGAVGKSAQIGLHTWLPDAMEGPTPVSALIHAATMVTAGVFMIARCSPLFEYSP 283

Query: 181 ---------------------------------DSTTQLGYMIFACGISNYSVSVFHLMN 204
                                             + +QLGYMIFACGISNYSVSVFHLMN
Sbjct: 284 NALIVITFVGAMTSFFAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMN 343

[Close]

BLAST of Carg26661 vs. Swiss-Prot
Match: sp|Q35099|NU5M_METSE (NADH-ubiquinone oxidoreductase chain 5 OS=Metridium senile OX=6116 GN=ND5 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 8.6e-52
Identity = 124/294 (42.18%), Postives = 157/294 (53.40%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWERSRSC-FIFVNSFL----ADKA 60
           M  DPH PRFM YLS+FTFFM +LVT DN  QLF+GWE    C ++ +N +L    A+KA
Sbjct: 104 MDGDPHVPRFMSYLSLFTFFMILLVTSDNYPQLFIGWEGVGLCSYLLINFWLTRIEANKA 163

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIF------------------------A 120
           AIKAM VNRVGD G    +   +  F  +DF+++F                         
Sbjct: 164 AIKAMLVNRVGDIGFVLAMLAIWDQFGCLDFASVFNIVALAPSDNTTLICLFLFIGAVGK 223

Query: 121 RASAPRNSWISCNM---------------------------------------------- 180
            A    ++W+   M                                              
Sbjct: 224 SAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLLEQAPMALMVVTIVGSL 283

Query: 181 ----------------RLNAIDSTTQLGYMIFACGISNYSVSVFHLMNHAFFKALLFLSA 204
                           ++ A  + +QLGYM+ ACG+S YS+S+FHLMNHAFFKALLFLSA
Sbjct: 284 TAFMAATIGLVQNDLKKVIAYSTCSQLGYMVMACGLSQYSISLFHLMNHAFFKALLFLSA 343

[Close]

BLAST of Carg26661 vs. TrEMBL
Match: tr|A0A0M4RVP1|A0A0M4RVP1_CANSA (NADH-ubiquinone oxidoreductase chain 5 OS=Cannabis sativa OX=3483 GN=nad5 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.5e-85
Identity = 185/303 (61.06%), Postives = 193/303 (63.70%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWER-SRSCFIFVNSFL----ADKA 60
           MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWE    + ++ ++ +     ADKA
Sbjct: 104 MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWEGVGLASYLLIHFWFTRLQADKA 163

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI----- 120
           A KAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI     
Sbjct: 164 ATKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAITLICI 223

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 224 LLFIGAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTAL 283

Query: 181 ------------------------------DSTTQLGYMIFACGISNYSVSVFHLMNHAF 204
                                          + +QLGYMIFACGISNYSVSVFHLMNHAF
Sbjct: 284 IVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAF 343

[Close]

BLAST of Carg26661 vs. TrEMBL
Match: tr|E5DLI3|E5DLI3_MORAL (NADH dehydrogenase subunit 5 (Fragment) OS=Morus alba OX=3498 GN=nad5 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.5e-85
Identity = 185/303 (61.06%), Postives = 193/303 (63.70%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWER-SRSCFIFVNSFL----ADKA 60
           MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWE    + ++ ++ +     ADKA
Sbjct: 6   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWEGVGLASYLLIHFWFTRLQADKA 65

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI----- 120
           A KAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI     
Sbjct: 66  ATKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAITLICI 125

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 126 LLFIGAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTAL 185

Query: 181 ------------------------------DSTTQLGYMIFACGISNYSVSVFHLMNHAF 204
                                          + +QLGYMIFACGISNYSVSVFHLMNHAF
Sbjct: 186 IVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAF 245

[Close]

BLAST of Carg26661 vs. TrEMBL
Match: tr|E5DLH5|E5DLH5_MELMA (NADH-ubiquinone oxidoreductase chain 5 (Fragment) OS=Melianthus major OX=85230 GN=nad5 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.5e-85
Identity = 186/303 (61.39%), Postives = 193/303 (63.70%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWER-SRSCFIFVNSFL----ADKA 60
           MSEDPHSPRFMCYLSI TFFMPMLVTGDNSLQLFLGWE    + ++ +N +     ADKA
Sbjct: 23  MSEDPHSPRFMCYLSIPTFFMPMLVTGDNSLQLFLGWEGVGLASYLLINFWFTRLQADKA 82

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI----- 120
           AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI     
Sbjct: 83  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAITLICI 142

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 143 LLLIGAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTAL 202

Query: 181 ------------------------------DSTTQLGYMIFACGISNYSVSVFHLMNHAF 204
                                          + +QLGYMIFACGISNYSVSVFHLMNHAF
Sbjct: 203 IVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAF 262

[Close]

BLAST of Carg26661 vs. TrEMBL
Match: tr|E5DLR8|E5DLR8_9ROSA (NADH-ubiquinone oxidoreductase chain 5 (Fragment) OS=Zelkova serrata OX=45187 GN=nad5 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.5e-85
Identity = 185/303 (61.06%), Postives = 193/303 (63.70%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWER-SRSCFIFVNSFL----ADKA 60
           MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWE    + ++ ++ +     ADKA
Sbjct: 9   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWEGVGLASYLLIHFWFTRLQADKA 68

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI----- 120
           A KAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI     
Sbjct: 69  ATKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAITLICI 128

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 129 LLFIGAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTAL 188

Query: 181 ------------------------------DSTTQLGYMIFACGISNYSVSVFHLMNHAF 204
                                          + +QLGYMIFACGISNYSVSVFHLMNHAF
Sbjct: 189 IVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAF 248

[Close]

BLAST of Carg26661 vs. TrEMBL
Match: tr|E5DL82|E5DL82_CANSA (NADH-ubiquinone oxidoreductase chain 5 (Fragment) OS=Cannabis sativa OX=3483 GN=nad5 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.5e-85
Identity = 185/303 (61.06%), Postives = 193/303 (63.70%), Query Frame = 0


Query: 1   MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWER-SRSCFIFVNSFL----ADKA 60
           MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWE    + ++ ++ +     ADKA
Sbjct: 16  MSEDPHSPRFMCYLSIFTFFMPMLVTGDNSLQLFLGWEGVGLASYLLIHFWFTRLQADKA 75

Query: 61  AIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI----- 120
           A KAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAI     
Sbjct: 76  ATKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAITLICI 135

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 136 LLFIGAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVXAGVFMIARCSPLFEYPPTAL 195

Query: 181 ------------------------------DSTTQLGYMIFACGISNYSVSVFHLMNHAF 204
                                          + +QLGYMIFACGISNYSVSVFHLMNHAF
Sbjct: 196 IVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAF 255

The following BLAST results are available for this feature:

BLAST of Carg26661 vs. NCBI nr


Match Name	E-value	Identity	Description
ADL63550.1	2.3e-85	61.06	NADH dehydrogenase subunit 5, partial (mitochondrion) [Cannabis sativa]	[more]
ADL63557.1	2.3e-85	61.06	NADH dehydrogenase subunit 5, partial (mitochondrion) [Celtis yunnanensis]	[more]
ADL63643.1	2.3e-85	61.39	NADH dehydrogenase subunit 5, partial (mitochondrion) [Melianthus major]	[more]
ADL63651.1	2.3e-85	61.06	NADH dehydrogenase subunit 5, partial (mitochondrion) [Morus alba]	[more]
ADL63736.1	2.3e-85	61.06	NADH dehydrogenase subunit 5, partial (mitochondrion) [Zelkova serrata]	[more]

BLAST of Carg26661 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00060.1	6.1e-85	59.41	NADH dehydrogenase subunit 5C	[more]
ATMG00513.1	6.1e-85	59.41	NADH dehydrogenase 5A	[more]
ATMG00665.1	6.1e-85	59.41	NADH dehydrogenase 5B	[more]
ATCG01010.1	3.7e-21	28.01	NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein	[more]

BLAST of Carg26661 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P10330\|NU5M_OENBE	7.2e-83	59.41	NADH-ubiquinone oxidoreductase chain 5 OS=Oenothera berteroana OX=3950 GN=ND5 PE...	[more]
sp\|Q37680\|NU5M_WHEAT	7.4e-80	58.09	NADH-ubiquinone oxidoreductase chain 5 OS=Triticum aestivum OX=4565 GN=ND5 PE=3 ...	[more]
sp\|P29388\|NU5M_ARATH	2.2e-79	57.76	NADH-ubiquinone oxidoreductase chain 5 OS=Arabidopsis thaliana OX=3702 GN=ND5 PE...	[more]
sp\|P26849\|NU5M_MARPO	1.8e-70	52.94	NADH-ubiquinone oxidoreductase chain 5 OS=Marchantia polymorpha OX=3197 GN=ND5 P...	[more]
sp\|Q35099\|NU5M_METSE	8.6e-52	42.18	NADH-ubiquinone oxidoreductase chain 5 OS=Metridium senile OX=6116 GN=ND5 PE=3 S...	[more]

BLAST of Carg26661 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0M4RVP1\|A0A0M4RVP1_CANSA	1.5e-85	61.06	NADH-ubiquinone oxidoreductase chain 5 OS=Cannabis sativa OX=3483 GN=nad5 PE=3 S...	[more]
tr\|E5DLI3\|E5DLI3_MORAL	1.5e-85	61.06	NADH dehydrogenase subunit 5 (Fragment) OS=Morus alba OX=3498 GN=nad5 PE=4 SV=1	[more]
tr\|E5DLH5\|E5DLH5_MELMA	1.5e-85	61.39	NADH-ubiquinone oxidoreductase chain 5 (Fragment) OS=Melianthus major OX=85230 G...	[more]
tr\|E5DLR8\|E5DLR8_9ROSA	1.5e-85	61.06	NADH-ubiquinone oxidoreductase chain 5 (Fragment) OS=Zelkova serrata OX=45187 GN...	[more]
tr\|E5DL82\|E5DL82_CANSA	1.5e-85	61.06	NADH-ubiquinone oxidoreductase chain 5 (Fragment) OS=Cannabis sativa OX=3483 GN=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001750	ND/Mrp_mem

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26661-RA	Carg26661-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	PFAM	PF00361	Proton_antipo_M	coord: 109..203 e-value: 1.2E-23 score: 83.6
None	No IPR available	PANTHER	PTHR42829	FAMILY NOT NAMED	coord: 1..96 coord: 114..204
None	No IPR available	PANTHER	PTHR42829:SF2	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5	coord: 1..96 coord: 114..204

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26661	CmoCh17G004610	Cucurbita moschata (Rifu)	carcmoB1210

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None