Carg26430 (gene) Silver-seed gourd

NameCarg26430
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPatatin
LocationCucurbita_argyrosperma_scaffold_457 : 57939 .. 59062 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCAGTTGCTGTTACTCAAGTTTTTTGGAGGCCCAGAGGCTTGTTGGTGGATCAGTTTGATTCAAAAGATGATCTCATCAATGCAGTTTTCACTTCTTCCTTTATTCCAGGGTGGGTATTTTAGTTTCACATCCTCTTGAATGTTCTTACTTTTCCTAGTTGGGTAAATGACCCTGAGCTGAAATAACGCTTTTGTGTAGATACCTAGCGCCAAGACCCGTCACCGTCTTTCGGAATAGACTATGCATTGATGGTGGTCTAACATTGTTCATGCCACCTACTTCTGCCTCTCAAACGGTATTTACTTGATAAATTTCTCAATGGTTTTTCGTATTTCAGTCACCCTGAAATTTTGCTTTTGGACGGTGTCGCAGGTGCGTGTATGTGCTTTCCCCGCTACCCGATTGGGCTTTGAAGGGATTGGGATCAGTCCAGACTGCAACCCTGAAAACAGAGCTGGGCCAAGAGAGGTAAATGAGTTCGACAAAGCTCGTCCAACAAGTAGATACATTGTTGTTTTCTCTTTGTAGTTTGATCAAACTCTTGCATGTTCTGCATCATATCAGCTTTTCAACTGGGCTCTTGAACCAGCAGAAGATTACATTCTAGACCGTCTCTTTGACCTCGGATATCAAGATGCAGCTGTTTGGGCCAAGGATAATCCTGTTGAAAAGCTGGTGGAAGACGAAAGGCTCGGTTGAGGACGCGGTTGTAACTAGCTGAAGCATAAAATTATGATGGCGAATCAATCTAAATGGAAGATGTTGCAGGCTTGGTGGTAAGTGCATGCCTTAAACCCAAAACTTTTTGGATTGCTGCTGATACTTACTGCCTCAAAATGGTTAGATACACATATATGAATCCCTTTAACAGAATAGAACAAAAGCCTTCATTCATGAATGTGAAGATAAAAATAATTATACAGGTAGATATCAAAAGTCCTGAGTTTATGATGGCCAAGTACAACATTCTCAGGATTTACATGTGCATTTTGCTGCTATTTTACTACATTCTCAGTACAAGAACAACATTCTTGTATTTTGTTTTCTTCATACAGTACATATATACATACATATATATATATATATATATCATTTCTTTTTCTTTGAACATCTTTCCA

mRNA sequence

ATGTCCCAGTTGCTGTTACTCAAGTTTTTTGGAGGCCCAGAGGCTTGTTGGTGGATCAGTTTGATTCAAAAGATGATCTCATCAATGCAGTTTTCACTTCTTCCTTTATTCCAGGGTGGATACCTAGCGCCAAGACCCGTCACCGTCTTTCGGAATAGACTATGCATTGATGGTGGTCTAACATTGTTCATGCCACCTACTTCTGCCTCTCAAACGGTGCGTGTATGTGCTTTCCCCGCTACCCGATTGGGCTTTGAAGGGATTGGGATCAGTCCAGACTGCAACCCTGAAAACAGAGCTGGGCCAAGAGAGCTTTTCAACTGGGCTCTTGAACCAGCAGAAGATTACATTCTAGACCGTCTCTTTGACCTCGGATATCAAGATGCAGCTGTTTGGGCCAAGGATAATCCTGTTGAAAAGCTGGTGGAAGACGAAAGGCTCGGTTGAGGACGCGGTTGTAACTAGCTGAAGCATAAAATTATGATGGCGAATCAATCTAAATGGAAGATGTTGCAGGCTTGGTGGTAAGTGCATGCCTTAAACCCAAAACTTTTTGGATTGCTGCTGATACTTACTGCCTCAAAATGGTTAGATACACATATATGAATCCCTTTAACAGAATAGAACAAAAGCCTTCATTCATGAATGTGAAGATAAAAATAATTATACAGGTAGATATCAAAAGTCCTGAGTTTATGATGGCCAAGTACAACATTCTCAGGATTTACATGTGCATTTTGCTGCTATTTTACTACATTCTCAGTACAAGAACAACATTCTTGTATTTTGTTTTCTTCATACAGTACATATATACATACATATATATATATATATATATCATTTCTTTTTCTTTGAACATCTTTCCA

Coding sequence (CDS)

ATGTCCCAGTTGCTGTTACTCAAGTTTTTTGGAGGCCCAGAGGCTTGTTGGTGGATCAGTTTGATTCAAAAGATGATCTCATCAATGCAGTTTTCACTTCTTCCTTTATTCCAGGGTGGATACCTAGCGCCAAGACCCGTCACCGTCTTTCGGAATAGACTATGCATTGATGGTGGTCTAACATTGTTCATGCCACCTACTTCTGCCTCTCAAACGGTGCGTGTATGTGCTTTCCCCGCTACCCGATTGGGCTTTGAAGGGATTGGGATCAGTCCAGACTGCAACCCTGAAAACAGAGCTGGGCCAAGAGAGCTTTTCAACTGGGCTCTTGAACCAGCAGAAGATTACATTCTAGACCGTCTCTTTGACCTCGGATATCAAGATGCAGCTGTTTGGGCCAAGGATAATCCTGTTGAAAAGCTGGTGGAAGACGAAAGGCTCGGTTGA

Protein sequence

MSQLLLLKFFGGPEACWWISLIQKMISSMQFSLLPLFQGGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCNPENRAGPRELFNWALEPAEDYILDRLFDLGYQDAAVWAKDNPVEKLVEDERLG
BLAST of Carg26430 vs. NCBI nr
Match: XP_022943045.1 (patatin-like phospholipase domain-containing protein 2 [Cucurbita moschata])

HSP 1 Score: 236.9 bits (603), Expect = 4.4e-59
Identity = 110/112 (98.21%), Postives = 110/112 (98.21%), Query Frame = 0

Query: 37  FQGGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCNP 96
           F  GYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCNP
Sbjct: 275 FIPGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCNP 334

Query: 97  ENRAGPRELFNWALEPAEDYILDRLFDLGYQDAAVWAKDNPVEKLVEDERLG 149
           ENRAGPRELFNWALEPAEDYILDRLFDLGYQDAAVWAKDNPVEKLVEDERLG
Sbjct: 335 ENRAGPRELFNWALEPAEDYILDRLFDLGYQDAAVWAKDNPVEKLVEDERLG 386

BLAST of Carg26430 vs. NCBI nr
Match: XP_023513040.1 (patatin-like phospholipase domain-containing protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.0 bits (598), Expect = 1.7e-58
Identity = 109/112 (97.32%), Postives = 109/112 (97.32%), Query Frame = 0

Query: 37  FQGGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCNP 96
           F  GYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCNP
Sbjct: 273 FIPGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCNP 332

Query: 97  ENRAGPRELFNWALEPAEDYILDRLFDLGYQDAAVWAKDNPVEKLVEDERLG 149
           ENRAGPRELFNWALEPAEDYILD LFDLGYQDAAVWAKDNPVEKLVEDERLG
Sbjct: 333 ENRAGPRELFNWALEPAEDYILDHLFDLGYQDAAVWAKDNPVEKLVEDERLG 384

BLAST of Carg26430 vs. NCBI nr
Match: XP_022981351.1 (patatin-like phospholipase domain-containing protein 4 [Cucurbita maxima])

HSP 1 Score: 232.3 bits (591), Expect = 1.1e-57
Identity = 108/112 (96.43%), Postives = 108/112 (96.43%), Query Frame = 0

Query: 37  FQGGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCNP 96
           F  GYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTV VCAFPATRLGFEGIGISPDCNP
Sbjct: 273 FIPGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVCVCAFPATRLGFEGIGISPDCNP 332

Query: 97  ENRAGPRELFNWALEPAEDYILDRLFDLGYQDAAVWAKDNPVEKLVEDERLG 149
           ENRAGPRELFNWALEPAEDYILDRLFDLGYQDA VWAKDNPVEKLVEDERLG
Sbjct: 333 ENRAGPRELFNWALEPAEDYILDRLFDLGYQDAVVWAKDNPVEKLVEDERLG 384

BLAST of Carg26430 vs. NCBI nr
Match: XP_022149306.1 (patatin-like phospholipase domain-containing protein 2 [Momordica charantia])

HSP 1 Score: 221.9 bits (564), Expect = 1.5e-54
Identity = 101/109 (92.66%), Postives = 104/109 (95.41%), Query Frame = 0

Query: 37  FQGGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCNP 96
           F  GYLAPRP T+FRNRLCIDGGLTLFMPPTSAS TVRVCAFPA+RLGFEGIGISPDCNP
Sbjct: 277 FIPGYLAPRPATIFRNRLCIDGGLTLFMPPTSASHTVRVCAFPASRLGFEGIGISPDCNP 336

Query: 97  ENRAGPRELFNWALEPAEDYILDRLFDLGYQDAAVWAKDNPVEKLVEDE 146
           ENRAGPRELFNWALEPAEDYILDRLFDLGYQDA VWA+DNPVEKLVEDE
Sbjct: 337 ENRAGPRELFNWALEPAEDYILDRLFDLGYQDATVWAEDNPVEKLVEDE 385

BLAST of Carg26430 vs. NCBI nr
Match: XP_004149962.1 (PREDICTED: patatin-like phospholipase domain-containing protein 2 [Cucumis sativus] >KGN57568.1 hypothetical protein Csa_3G214570 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 2.5e-54
Identity = 102/110 (92.73%), Postives = 106/110 (96.36%), Query Frame = 0

Query: 37  FQGGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCNP 96
           F  GYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPA+RLGFEGIGISPDCNP
Sbjct: 276 FIPGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPASRLGFEGIGISPDCNP 335

Query: 97  ENRAGPRELFNWALEPAEDYILDRLFDLGYQDAAVWAKDNPVEKLVEDER 147
           ENRAGPRELFNWALEPAED ILD+LF+LGYQDAAVW +DNPVEKLVEDER
Sbjct: 336 ENRAGPRELFNWALEPAEDDILDQLFELGYQDAAVWGEDNPVEKLVEDER 385

BLAST of Carg26430 vs. TAIR10
Match: AT1G33270.1 (Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein)

HSP 1 Score: 168.3 bits (425), Expect = 3.5e-42
Identity = 76/109 (69.72%), Postives = 89/109 (81.65%), Query Frame = 0

Query: 37  FQGGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCNP 96
           F  GYLAPRP T+FRNRLC+DGGLTLFMPPT+A++TVRVCAF A+    +GI I PDCNP
Sbjct: 251 FIPGYLAPRPATMFRNRLCVDGGLTLFMPPTAAAKTVRVCAFSASNFKLKGIEICPDCNP 310

Query: 97  ENRAGPRELFNWALEPAEDYILDRLFDLGYQDAAVWAKDNPVEKLVEDE 146
            NRA  R+L NWALEPAED +L+RLF+LGY DAA WA+ NPVE LV D+
Sbjct: 311 LNRATSRQLLNWALEPAEDEVLERLFELGYADAATWAEMNPVEGLVYDD 359

BLAST of Carg26430 vs. TrEMBL
Match: tr|A0A0A0L746|A0A0A0L746_CUCSA (Patatin OS=Cucumis sativus OX=3659 GN=Csa_3G214570 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.7e-54
Identity = 102/110 (92.73%), Postives = 106/110 (96.36%), Query Frame = 0

Query: 37  FQGGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCNP 96
           F  GYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPA+RLGFEGIGISPDCNP
Sbjct: 276 FIPGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPASRLGFEGIGISPDCNP 335

Query: 97  ENRAGPRELFNWALEPAEDYILDRLFDLGYQDAAVWAKDNPVEKLVEDER 147
           ENRAGPRELFNWALEPAED ILD+LF+LGYQDAAVW +DNPVEKLVEDER
Sbjct: 336 ENRAGPRELFNWALEPAEDDILDQLFELGYQDAAVWGEDNPVEKLVEDER 385

BLAST of Carg26430 vs. TrEMBL
Match: tr|A0A1S3C2I5|A0A1S3C2I5_CUCME (Patatin OS=Cucumis melo OX=3656 GN=LOC103496128 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 6.3e-54
Identity = 100/110 (90.91%), Postives = 106/110 (96.36%), Query Frame = 0

Query: 37  FQGGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCNP 96
           F  GYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPA+RLGFEGIGISPDCNP
Sbjct: 279 FIPGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPASRLGFEGIGISPDCNP 338

Query: 97  ENRAGPRELFNWALEPAEDYILDRLFDLGYQDAAVWAKDNPVEKLVEDER 147
           ENRAGPRELFNWALEPAED ILD+LF+LGY+DAAVW +DNPVEKLVEDE+
Sbjct: 339 ENRAGPRELFNWALEPAEDDILDKLFELGYEDAAVWGEDNPVEKLVEDEK 388

BLAST of Carg26430 vs. TrEMBL
Match: tr|A0A2I4FV16|A0A2I4FV16_9ROSI (Patatin OS=Juglans regia OX=51240 GN=LOC109002274 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.9e-51
Identity = 93/110 (84.55%), Postives = 104/110 (94.55%), Query Frame = 0

Query: 37  FQGGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCNP 96
           F  GYLAPRP T+FRNRLCIDGGLTLFMPPTSA+QTVRVCAFPA+RLG +GIGISPDCNP
Sbjct: 283 FIPGYLAPRPATLFRNRLCIDGGLTLFMPPTSAAQTVRVCAFPASRLGLQGIGISPDCNP 342

Query: 97  ENRAGPRELFNWALEPAEDYILDRLFDLGYQDAAVWAKDNPVEKLVEDER 147
           ENRA PRELFNWALEPAEDY+LDRLF+LGYQDAAVWA+ NPVE++VED++
Sbjct: 343 ENRASPRELFNWALEPAEDYVLDRLFELGYQDAAVWAEKNPVEEVVEDDK 392

BLAST of Carg26430 vs. TrEMBL
Match: tr|W9RMD0|W9RMD0_9ROSA (Patatin OS=Morus notabilis OX=981085 GN=L484_024189 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.5e-50
Identity = 94/108 (87.04%), Postives = 100/108 (92.59%), Query Frame = 0

Query: 37  FQGGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCNP 96
           F  GYLAPRP T FRN+LCIDGGLTLFMPPTSA QTVRVCAFPA+RLG +GIGISPDCNP
Sbjct: 297 FIPGYLAPRPATFFRNQLCIDGGLTLFMPPTSAPQTVRVCAFPASRLGLDGIGISPDCNP 356

Query: 97  ENRAGPRELFNWALEPAEDYILDRLFDLGYQDAAVWAKDNPVEKLVED 145
           ENRA PRELFNWALEPAEDYILDRLF+LGYQDAAVWAK+NPV +LVED
Sbjct: 357 ENRASPRELFNWALEPAEDYILDRLFELGYQDAAVWAKENPVSELVED 404

BLAST of Carg26430 vs. TrEMBL
Match: tr|A0A2R6RDV3|A0A2R6RDV3_ACTCH (Patatin OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc07889 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.5e-50
Identity = 92/109 (84.40%), Postives = 102/109 (93.58%), Query Frame = 0

Query: 37  FQGGYLAPRPVTVFRNRLCIDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCNP 96
           F  GYLAPRP T+FRNRLCIDGGLTLFMPPTSA+QTVRVCAFPATRLG +GIGISPDCNP
Sbjct: 296 FIPGYLAPRPATMFRNRLCIDGGLTLFMPPTSAAQTVRVCAFPATRLGMQGIGISPDCNP 355

Query: 97  ENRAGPRELFNWALEPAEDYILDRLFDLGYQDAAVWAKDNPVEKLVEDE 146
           ENRA PRELFNWALEPAEDY+LD+LF+LGY DAAVWAKDNPVE++V ++
Sbjct: 356 ENRATPRELFNWALEPAEDYVLDKLFELGYLDAAVWAKDNPVEEIVRED 404

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022943045.14.4e-5998.21patatin-like phospholipase domain-containing protein 2 [Cucurbita moschata][more]
XP_023513040.11.7e-5897.32patatin-like phospholipase domain-containing protein 2 [Cucurbita pepo subsp. pe... [more]
XP_022981351.11.1e-5796.43patatin-like phospholipase domain-containing protein 4 [Cucurbita maxima][more]
XP_022149306.11.5e-5492.66patatin-like phospholipase domain-containing protein 2 [Momordica charantia][more]
XP_004149962.12.5e-5492.73PREDICTED: patatin-like phospholipase domain-containing protein 2 [Cucumis sativ... [more]
Match NameE-valueIdentityDescription
AT1G33270.13.5e-4269.72Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L746|A0A0A0L746_CUCSA1.7e-5492.73Patatin OS=Cucumis sativus OX=3659 GN=Csa_3G214570 PE=3 SV=1[more]
tr|A0A1S3C2I5|A0A1S3C2I5_CUCME6.3e-5490.91Patatin OS=Cucumis melo OX=3656 GN=LOC103496128 PE=3 SV=1[more]
tr|A0A2I4FV16|A0A2I4FV16_9ROSI2.9e-5184.55Patatin OS=Juglans regia OX=51240 GN=LOC109002274 PE=3 SV=1[more]
tr|W9RMD0|W9RMD0_9ROSA1.5e-5087.04Patatin OS=Morus notabilis OX=981085 GN=L484_024189 PE=3 SV=1[more]
tr|A0A2R6RDV3|A0A2R6RDV3_ACTCH2.5e-5084.40Patatin OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc07889 PE=3 ... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0016042lipid catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR033562PLPL
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016042 lipid catabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26430-RACarg26430-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12406:SF7BRUMMER, ISOFORM B-RELATEDcoord: 40..143
IPR033562Patatin-like phospholipase domain-containing proteinPANTHERPTHR12406CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 IPLA2 -RELATEDcoord: 40..143