Carg26364 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26364
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	expansin-like A3
Location	Cucurbita_argyrosperma_scaffold_334 : 104557 .. 106855 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATCATCCACGAAGCTCATAGAGTCGGTGGGAACAAACTCCCATCTCTCCACGTGAAACACATTACCTTAAAATCATAAACAAACCTCATTGGGAACACATTATCCAATGGCTCTTCTTCTATAACAATCCATTAGCTTCTCCTCTTAAGACTTCATCCAAAAATGGGCTTATTCCTTTGCCTTCTCTTGTTCTTCCTCGCCTCATCAGCTTCTGCCTGTGATCGCTGTCTCCACCACTCCAAGACTGCCTATATCTCAAATGATTCAACACTTTCATGTACAATTCTTCTTAAAACCTTAGATTTTCTCTTCTTTTAGTACTTTTATTCAATAATTTGCTATCATTTGCAGCTGGGGCTTGTGGCTATGGCTCCTTAGCCCTTGGCTTCCTCAACGGACACCTCGCTGCTGGCGTGCCGTCCCTTTACAAGGAGGGCGTTCGTTGTGGCGCATGCTATCAGGTAAAATGCAGCTTCGAACTATTCTATCTTTTAAAGGGTTTCGTATTGTCGGGTTGAGTAATCAACTTATTTGAGTTGGGTTGAGTTTAAACAACGTTAAATAGGTTGAATTAGTTTATAGGTTATTTGAAACTATATTAAAAGAACTCGTGTGATCATGTCATAGGAGATAGGAATTTTAAACCCTAGTTTGACTCGTGGACATAAAACATTACAAAAATCACTCTCACACACGGTAACAGCCCAAACCTACTATTAGCAGATATTGCCCTCTTTAGGGTTTTTTCTCAAGGTTTTTAAAACGCGTATGCTAGGGAGAAGTTTCCACACCCTTATAAAGAATGCTTTGTTCTTCTCCCCAACTGATGTGGGATCTCACAACTCATCCCTCTTCGGGCCCAACGTCATTGTTGGCACTCATTCCCTTCTCTAATCGATGTGAGACCCCCAATCCACCCCCTTTGAGGCCCAGCATCCTTGCTAGCACACCGCCGCATGTCCAACTCCTTCGCCTTCGGGGTTCAGCCTCTTGGCTGGCACATCGCCACCTAGTGTCTGGCTCTGATACCCTTTATAACATCCCAAACCCACTGTTAATAGATATTGTCCTCTTTGAGCTTTCTCTTCCAGTATTCTTCTCAAAGTTTTTAAAACGCTAGTCTATTACGAAGAGGTTTCTACACTCTTATAAAAAAAAAAAATTCTCTCTCCCAATTGACGTGGGATCTACACGGCTACAGATGAGGTGCAAAGACAAGAAACTTTGCAGCACAGCTGGGACCAAACTCATTTTGACTGATCTGAATCTACACACCAATAGAACTGATCTTGTTTTGAGTAAGAAAGCTTTTTCTTGGCTCAAAAGGGCCAACATTACAATATCTTCAAGCGCACAACTCTCGATATTGAATACAAGAGGTTAGATTTTTAATATAAGTCTACTGCTAACAGATATTATCTTATTTGGACTTTCTCTTTCGAGCTTCCCTCGAAGATTTCCACACCTTTATAAAAAATGTTTCGTTCTCCTCTTCAACCAATGTGGGATCTCATTCCCTTCTCCAGTCGATGCGGGACCCTCCAATCCACCTCCCTTTAGGACCCAACATCCTTACTGACACACTGCCTCGTGTCCATCCCTTTGGCACTTAGCCTCCTCACTGGCACATCGTCCGGTGTCTGGCTCTGATACCATTTGTGAGATCCCATGAGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCGCTCCCTAGCAGGCGTTTTTAAAACTTCGAGGAAAACTTGAAAACGTAATTTTAAAATAAGATGCACTTTTCAAAGGGTTTATATTTATGGGCTGTGCATGGTTTTGCAGGATACCATGTGAATACAAAAAACAAAATCTGTCAGTAAGAATTGAAGAGTCAAGCCAAAAGCCCCATCACATGACTGTTAAGTTCCTATATCAAGGTGGGCAGACTGATATTCTACTAGTTCACCTTCGTCCGGTAAGTTCGGGATTCAAATTTCTGATCTTTTGATAAAAAAGTAAGAACAAAAATAAACTAAGTTGACGAATATTATTGGCATAAAAGGTGGATTCGGGAAGTACGTTCTTCATGAGCAGAAGGCATGGGACGGCGGTGTGGGAAATAGACACGGCACCAGAGGCGGCGGTGGTGTTTCAACTAAGAGTGATTTCAGGGTTCGACGGGATGTGGGTGACGGCGGAGCGGGCGGTTCCGGCGGACTGGAAGCCGGGGATGATCTACGACCTTGGAGTTCAGATGGATGCCATTGCCAAAGGACAAGAGAGCTGTAGAAAATGTGATGAAGGGCATTGGTGA

mRNA sequence

ATGAGAATCATCCACGAAGCTCATAGAGTCGCTGGGGCTTGTGGCTATGGCTCCTTAGCCCTTGGCTTCCTCAACGGACACCTCGCTGCTGGCGTGCCGTCCCTTTACAAGGAGGGCGTTCGTTGTGGCGCATGCTATCAGGTAAAATGCAGCTTCGAACTATTCTATCTTTTAAAGGTAAGAATTGAAGAGTCAAGCCAAAAGCCCCATCACATGACTGTTAAGTTCCTATATCAAGGTGGGCAGACTGATATTCTACTAGTTCACCTTCGTCCGGTGGATTCGGGAAGTACGTTCTTCATGAGCAGAAGGCATGGGACGGCGGTGTGGGAAATAGACACGGCACCAGAGGCGGCGGTGGTGTTTCAACTAAGAGTGATTTCAGGGTTCGACGGGATGTGGGTGACGGCGGAGCGGGCGGTTCCGGCGGACTGGAAGCCGGGGATGATCTACGACCTTGGAGTTCAGATGGATGCCATTGCCAAAGGACAAGAGAGCTGTAGAAAATGTGATGAAGGGCATTGGTGA

Coding sequence (CDS)

ATGAGAATCATCCACGAAGCTCATAGAGTCGCTGGGGCTTGTGGCTATGGCTCCTTAGCCCTTGGCTTCCTCAACGGACACCTCGCTGCTGGCGTGCCGTCCCTTTACAAGGAGGGCGTTCGTTGTGGCGCATGCTATCAGGTAAAATGCAGCTTCGAACTATTCTATCTTTTAAAGGTAAGAATTGAAGAGTCAAGCCAAAAGCCCCATCACATGACTGTTAAGTTCCTATATCAAGGTGGGCAGACTGATATTCTACTAGTTCACCTTCGTCCGGTGGATTCGGGAAGTACGTTCTTCATGAGCAGAAGGCATGGGACGGCGGTGTGGGAAATAGACACGGCACCAGAGGCGGCGGTGGTGTTTCAACTAAGAGTGATTTCAGGGTTCGACGGGATGTGGGTGACGGCGGAGCGGGCGGTTCCGGCGGACTGGAAGCCGGGGATGATCTACGACCTTGGAGTTCAGATGGATGCCATTGCCAAAGGACAAGAGAGCTGTAGAAAATGTGATGAAGGGCATTGGTGA

Protein sequence

MRIIHEAHRVAGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCSFELFYLLKVRIEESSQKPHHMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGFDGMWVTAERAVPADWKPGMIYDLGVQMDAIAKGQESCRKCDEGHW

Homology

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BLAST of Carg26364 vs. NCBI nr
Match: XP_023529769.1 (expansin-like A2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.4 bits (768), Expect = 3.9e-78
Identity = 153/225 (68.00%), Postives = 159/225 (70.67%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GACGYGSLALGFL+GHLAAGVPSLYKEGVRCGACYQ++C                    
Sbjct: 40  SGACGYGSLALGFLDGHLAAGVPSLYKEGVRCGACYQMRCKDKKLCSTAGTKLILTDLNL 99

Query: 71  ------------------------------SFELFYL----------LKVRIEESSQKPH 130
                                         S E+ Y           L VRIEESSQKPH
Sbjct: 100 HTNRTDLVLSKKAFSALAQKGQHYNIFKRTSLEVEYKRIPCEYKKQNLSVRIEESSQKPH 159

Query: 131 HMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 176
           HM +KFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF
Sbjct: 160 HMAIKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 219

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BLAST of Carg26364 vs. NCBI nr
Match: XP_022928449.1 (expansin-like A2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 296.2 bits (757), Expect = 7.3e-77
Identity = 151/225 (67.11%), Postives = 157/225 (69.78%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCS------------------- 70
           +GACGYGSLALGFL+GHLAAGVPSLYKEGVRCGACYQ++C                    
Sbjct: 39  SGACGYGSLALGFLDGHLAAGVPSLYKEGVRCGACYQMRCKDKKLCSTSGTKLILTDLNL 98

Query: 71  -----------------------FELF------------------YLLKVRIEESSQKPH 130
                                  + +F                    L VRIEESSQKPH
Sbjct: 99  HTNRTDLVLSKKAFSALAQKGQHYNIFKRTTLDVEYKRIPCEYKKQNLSVRIEESSQKPH 158

Query: 131 HMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 176
           HM VKFLYQGGQTDILLVHLRPVD GSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF
Sbjct: 159 HMAVKFLYQGGQTDILLVHLRPVDWGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 218

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BLAST of Carg26364 vs. NCBI nr
Match: XP_011658619.1 (PREDICTED: expansin-like A3 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 8.1e-68
Identity = 132/225 (58.67%), Postives = 148/225 (65.78%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GACGYGSLALG  NGHLAAGVPSLYKEGVRCGACYQ++C                    
Sbjct: 39  SGACGYGSLALGLFNGHLAAGVPSLYKEGVRCGACYQIRCKDKKVCSRRGTKVILTDQNV 98

Query: 71  ------------------------------SFELFYL----------LKVRIEESSQKPH 130
                                         + ++ Y           L VRIEESS+KPH
Sbjct: 99  QTNRTDFVLSKKAFSAMAQKGHDKTILRHGTLDIEYKRMPCEYKKQNLSVRIEESSKKPH 158

Query: 131 HMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 176
           HM +KFL+QGGQTDI+LVHL PV+ G T FMSRRHGTAVWEID  PE AV+FQ+RVISGF
Sbjct: 159 HMALKFLFQGGQTDIVLVHLHPVNGGRTAFMSRRHGTAVWEIDMMPEKAVMFQIRVISGF 218

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BLAST of Carg26364 vs. NCBI nr
Match: XP_008447894.1 (PREDICTED: expansin-like A3 [Cucumis melo])

HSP 1 Score: 257.7 bits (657), Expect = 2.9e-65
Identity = 127/225 (56.44%), Postives = 145/225 (64.44%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GACGYGSLAL   NGHLA+G+PSLYKEGVRCGACYQ++C                    
Sbjct: 39  SGACGYGSLALPLFNGHLASGIPSLYKEGVRCGACYQIRCKDKKVCSRRGTKVILTDQNV 98

Query: 71  ------------------------------SFELFYL----------LKVRIEESSQKPH 130
                                         +  + Y           L VRIEE S+KPH
Sbjct: 99  QSNRTDFILSKKAFSAMAQKGHAKTILRHETLNIEYKRMPCEYKKQNLSVRIEEWSKKPH 158

Query: 131 HMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 176
           HM +KFL+QGGQTDI+LVHL PV+ G T FMSRRHGT VWEIDT PE AV+FQ+RVISGF
Sbjct: 159 HMALKFLFQGGQTDIVLVHLHPVNGGRTAFMSRRHGTGVWEIDTMPEEAVMFQMRVISGF 218

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BLAST of Carg26364 vs. NCBI nr
Match: XP_022135692.1 (expansin-like A2 [Momordica charantia])

HSP 1 Score: 257.7 bits (657), Expect = 2.9e-65
Identity = 131/225 (58.22%), Postives = 146/225 (64.89%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GACGYGSLALGFL+GHLAAGVPSLYKEGVRCGACYQV+C                    
Sbjct: 39  SGACGYGSLALGFLDGHLAAGVPSLYKEGVRCGACYQVRCKDKKVCSRGGTKVILTDLNL 98

Query: 71  ------------SFELFYL----------------------------LKVRIEESSQKPH 130
                       +F    L                            + VR EESSQKPH
Sbjct: 99  HSNTTDFVLSKKAFSAMALKPRDKNILKTGTVDVEYKRIPCEYKKQNVSVRXEESSQKPH 158

Query: 131 HMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 176
           H+ VKFL+QGGQTDI+LVHL PV+SG T FM+RRHGTAVWE D A E AVVFQLRVISGF
Sbjct: 159 HLAVKFLFQGGQTDIVLVHLHPVNSGRTRFMNRRHGTAVWETDAAVEGAVVFQLRVISGF 218

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BLAST of Carg26364 vs. TAIR10
Match: AT3G45960.2 (expansin-like A3)

HSP 1 Score: 144.8 bits (364), Expect = 4.9e-35
Identity = 83/225 (36.89%), Postives = 112/225 (49.78%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GAC YG +A  F  GH+AA +PS+YK+G  CGAC+QV+C                    
Sbjct: 41  SGACAYGPMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCNSKGTIVMVTDLNT 100

Query: 71  --------SFELF------------YLLK---------------------VRIEESSQKP 130
                   S   F            YLLK                     VR+EE+S+KP
Sbjct: 101 SNQTDLVLSSRAFRAMAKPVVGVDKYLLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKP 160

Query: 131 HHMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISG 175
           +++ +K LYQGGQT+++ + + PV S    +MSR HG AVW  D  P  A+ F+  V  G
Sbjct: 161 NYLAIKLLYQGGQTEVVGIDIAPVGSSQWSYMSRSHG-AVWATDKVPTGALQFKFTVTGG 220

[Close]

BLAST of Carg26364 vs. TAIR10
Match: AT4G38400.1 (expansin-like A2)

HSP 1 Score: 144.4 bits (363), Expect = 6.4e-35
Identity = 77/226 (34.07%), Postives = 113/226 (50.00%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCS------------------- 70
           +GAC YGS+A GF  GH+AA +PS+YK+G  CGAC+QV+C                    
Sbjct: 42  SGACAYGSMATGFFAGHIAAALPSIYKDGSGCGACFQVRCKNPTLCSSKGTTVIVTDLNK 101

Query: 71  --------------------------------FELFY----------LLKVRIEESSQKP 130
                                            ++ Y           + VR+EESS+ P
Sbjct: 102 TNQTDLVLSSRAFRAMAKPVVGADRDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNP 161

Query: 131 HHMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISG 176
           +++ +K LYQGGQT+++ +++  V S    +M+R HG AVW  D  P  A+ F+  V +G
Sbjct: 162 NYLAIKLLYQGGQTEVVAIYIAQVGSSHWSYMTRSHG-AVWVTDKVPNGALQFRFVVTAG 221

[Close]

BLAST of Carg26364 vs. TAIR10
Match: AT3G45970.1 (expansin-like A1)

HSP 1 Score: 137.1 bits (344), Expect = 1.0e-32
Identity = 74/227 (32.60%), Postives = 111/227 (48.90%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCS------------------- 70
           +GAC YGS+A  F  GH+AA +PS+YK+G  CGAC+QV+C                    
Sbjct: 41  SGACAYGSMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCSTKGTIVMITDLNK 100

Query: 71  --------------------------------FELFYL----------LKVRIEESSQKP 130
                                            ++ Y           + VR+EE+S+KP
Sbjct: 101 SNQTDLVLSSRAFRAMAKPIVGADKDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKP 160

Query: 131 HHMTVKFLYQGGQTDILLVHLRPVDSGSTF-FMSRRHGTAVWEIDTAPEAAVVFQLRVIS 176
           +++ +K LYQGGQT+++ + +  V S   + +M+R HG AVW  D  P  A+ F+  V  
Sbjct: 161 NYLEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSHG-AVWVTDKVPTGAIQFRFVVTG 220

[Close]

BLAST of Carg26364 vs. TAIR10
Match: AT4G17030.1 (expansin-like B1)

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-12
Identity = 50/203 (24.63%), Postives = 69/203 (33.99%), Query Frame = 0


Query: 12  GACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCSF------------------- 71
           G CGYG       NG ++     L+  G  CGACYQV+C                     
Sbjct: 46  GHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPPHCSEEGVYVVATDSGEG 105

Query: 72  ----------------------ELF------------------YLLKVRIEESSQKPHHM 131
                                 +L+                  Y L  +I E S  PH++
Sbjct: 106 DGTDFILSPKAYGRMARPGTENQLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYL 165

Query: 132 TVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGFDG 156
            +  LY GG  DIL V +   D      M R  G AV ++   P   +  +  V      
Sbjct: 166 AILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFG-AVHDLQNPPRGTLTLRFLVYGSAGI 225

[Close]

BLAST of Carg26364 vs. TAIR10
Match: AT1G65680.1 (expansin B2)

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-11
Identity = 56/207 (27.05%), Postives = 80/207 (38.65%), Query Frame = 0


Query: 12  GACGYG-SLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCS------------------- 71
           GACGYG ++A    +  ++AG PSL+K G  CGACYQVKC+                   
Sbjct: 66  GACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSACSKNPVTVVITDECP 125

Query: 72  --------FEL----------------------FYLLKVRIE------------ESSQKP 131
                   F+L                        +L  ++E            +     
Sbjct: 126 GCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNA 185

Query: 132 HHMTVKFLYQGGQTDILLVHLR-PVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVIS 156
           +   V   Y  G  +I  + L+  +DS     MS+  G AVW++D +        LRV S
Sbjct: 186 NSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWG-AVWKLDVSSPLRAPLSLRVTS 245

[Close]

BLAST of Carg26364 vs. Swiss-Prot
Match: sp|Q9LZT5|EXLA3_ARATH (Expansin-like A3 OS=Arabidopsis thaliana OX=3702 GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 8.9e-34
Identity = 83/225 (36.89%), Postives = 112/225 (49.78%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GAC YG +A  F  GH+AA +PS+YK+G  CGAC+QV+C                    
Sbjct: 41  SGACAYGPMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCNSKGTIVMVTDLNT 100

Query: 71  --------SFELF------------YLLK---------------------VRIEESSQKP 130
                   S   F            YLLK                     VR+EE+S+KP
Sbjct: 101 SNQTDLVLSSRAFRAMAKPVVGVDKYLLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKP 160

Query: 131 HHMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISG 175
           +++ +K LYQGGQT+++ + + PV S    +MSR HG AVW  D  P  A+ F+  V  G
Sbjct: 161 NYLAIKLLYQGGQTEVVGIDIAPVGSSQWSYMSRSHG-AVWATDKVPTGALQFKFTVTGG 220

[Close]

BLAST of Carg26364 vs. Swiss-Prot
Match: sp|Q9SVE5|EXLA2_ARATH (Expansin-like A2 OS=Arabidopsis thaliana OX=3702 GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-33
Identity = 77/226 (34.07%), Postives = 113/226 (50.00%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCS------------------- 70
           +GAC YGS+A GF  GH+AA +PS+YK+G  CGAC+QV+C                    
Sbjct: 42  SGACAYGSMATGFFAGHIAAALPSIYKDGSGCGACFQVRCKNPTLCSSKGTTVIVTDLNK 101

Query: 71  --------------------------------FELFY----------LLKVRIEESSQKP 130
                                            ++ Y           + VR+EESS+ P
Sbjct: 102 TNQTDLVLSSRAFRAMAKPVVGADRDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNP 161

Query: 131 HHMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISG 176
           +++ +K LYQGGQT+++ +++  V S    +M+R HG AVW  D  P  A+ F+  V +G
Sbjct: 162 NYLAIKLLYQGGQTEVVAIYIAQVGSSHWSYMTRSHG-AVWVTDKVPNGALQFRFVVTAG 221

[Close]

BLAST of Carg26364 vs. Swiss-Prot
Match: sp|Q9LZT4|EXLA1_ARATH (Expansin-like A1 OS=Arabidopsis thaliana OX=3702 GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.9e-31
Identity = 74/227 (32.60%), Postives = 111/227 (48.90%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCS------------------- 70
           +GAC YGS+A  F  GH+AA +PS+YK+G  CGAC+QV+C                    
Sbjct: 41  SGACAYGSMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCSTKGTIVMITDLNK 100

Query: 71  --------------------------------FELFYL----------LKVRIEESSQKP 130
                                            ++ Y           + VR+EE+S+KP
Sbjct: 101 SNQTDLVLSSRAFRAMAKPIVGADKDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKP 160

Query: 131 HHMTVKFLYQGGQTDILLVHLRPVDSGSTF-FMSRRHGTAVWEIDTAPEAAVVFQLRVIS 176
           +++ +K LYQGGQT+++ + +  V S   + +M+R HG AVW  D  P  A+ F+  V  
Sbjct: 161 NYLEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSHG-AVWVTDKVPTGAIQFRFVVTG 220

[Close]

BLAST of Carg26364 vs. Swiss-Prot
Match: sp|Q7XCL0|EXLA2_ORYSJ (Expansin-like A2 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.0e-30
Identity = 77/227 (33.92%), Postives = 107/227 (47.14%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           AG+CGYGSLA  F  GHLAA  P+L++ GV CGAC+QV+C                    
Sbjct: 51  AGSCGYGSLAASFNGGHLAAASPALFRGGVGCGACFQVRCKDGKLCSTAGAKVVVTDEAR 110

Query: 71  ------------------------------SFELFYL-----------LKVRIEESSQKP 130
                                         + ++ Y            L +R+EE S+ P
Sbjct: 111 STNRTDLVLSAAAYAAMARPGMAAQLRTRRAVDVEYKRVPCEYAAGRNLSIRVEEKSRPP 170

Query: 131 HHMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISG 176
             ++++FLYQGGQTDI+ V +  V S +  FM+R +G A W    AP   + F++ V  G
Sbjct: 171 RELSIRFLYQGGQTDIVAVDVATVGSSNWKFMTRDYGPA-WSTAQAPAGPLQFRVVVTGG 230

[Close]

BLAST of Carg26364 vs. Swiss-Prot
Match: sp|Q10S70|EXLA1_ORYSJ (Expansin-like A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.3e-29
Identity = 81/226 (35.84%), Postives = 107/226 (47.35%), Query Frame = 0


Query: 11  AGACGYGSLALGFL-NGHLAAGVPSLYKEGVRCGACYQVKC------------------- 70
           AG+CGYG+ A  F   G LAA  P+LY+ GV CGACYQV+C                   
Sbjct: 56  AGSCGYGTAAATFNGGGFLAAAGPALYRGGVGCGACYQVRCKDKKLCSNAGARVVVTDRA 115

Query: 71  ------------------------------SFELFY----------LLKVRIEESSQKPH 130
                                         + ++ Y           L VR++E S+ P+
Sbjct: 116 RTNRTGLVLSSPAFAAMARPGMAASLTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPN 175

Query: 131 HMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 176
            +T+ FLYQGGQTDI+ V +  V S S  FM+R HG + W +  AP   +  +L V  G+
Sbjct: 176 ELTISFLYQGGQTDIVAVDVAQVGSSSWKFMTREHGPS-WSMANAPPGPLQMRLVVTGGY 235

[Close]

BLAST of Carg26364 vs. TrEMBL
Match: tr|A0A1S3BIH4|A0A1S3BIH4_CUCME (expansin-like A3 OS=Cucumis melo OX=3656 GN=LOC103490243 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.9e-65
Identity = 127/225 (56.44%), Postives = 145/225 (64.44%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GACGYGSLAL   NGHLA+G+PSLYKEGVRCGACYQ++C                    
Sbjct: 39  SGACGYGSLALPLFNGHLASGIPSLYKEGVRCGACYQIRCKDKKVCSRRGTKVILTDQNV 98

Query: 71  ------------------------------SFELFYL----------LKVRIEESSQKPH 130
                                         +  + Y           L VRIEE S+KPH
Sbjct: 99  QSNRTDFILSKKAFSAMAQKGHAKTILRHETLNIEYKRMPCEYKKQNLSVRIEEWSKKPH 158

Query: 131 HMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 176
           HM +KFL+QGGQTDI+LVHL PV+ G T FMSRRHGT VWEIDT PE AV+FQ+RVISGF
Sbjct: 159 HMALKFLFQGGQTDIVLVHLHPVNGGRTAFMSRRHGTGVWEIDTMPEEAVMFQMRVISGF 218

[Close]

BLAST of Carg26364 vs. TrEMBL
Match: tr|A0A2I4GCG1|A0A2I4GCG1_9ROSI (expansin-like A2 OS=Juglans regia OX=51240 GN=LOC109006647 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.3e-39
Identity = 93/225 (41.33%), Postives = 122/225 (54.22%), Query Frame = 0


Query: 10  VAGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC------------------- 69
           ++GACGYGSLALGF +GHLAAG+PSLYK+G  CGAC+QV+C                   
Sbjct: 37  LSGACGYGSLALGFNSGHLAAGIPSLYKDGAGCGACFQVRCKNTTVCRREGARVILTDIN 96

Query: 70  ---------SFELF----------YLLKVRI---------------------EESSQKPH 129
                    S   F          ++LK+RI                     EESSQKP 
Sbjct: 97  HNNQTDFVLSSRAFMAMAQEGMGQHILKLRIVDVEYKRIPCQYKNQNLALRVEESSQKPD 156

Query: 130 HMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 176
           ++ +KFL+QGGQT+I+ V +  V S +  FMSR HG AVW+    P   + F+  V +G+
Sbjct: 157 YLAIKFLFQGGQTEIVGVDVAQVGSSNWGFMSRNHG-AVWDTSRVPSGPLQFRFVVTAGY 216

[Close]

BLAST of Carg26364 vs. TrEMBL
Match: tr|A0A1U8IUC9|A0A1U8IUC9_GOSHI (expansin-like A2 isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107898542 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.2e-39
Identity = 91/224 (40.62%), Postives = 119/224 (53.12%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GACGYGSLALG   GHLAAGV SLYK+G  CGAC+Q++C                    
Sbjct: 39  SGACGYGSLALGLSGGHLAAGVSSLYKDGAGCGACFQIRCNNSTLCSSKGTNVTITDINH 98

Query: 71  -----------------------------SFELFYL----------LKVRIEESSQKPHH 130
                                        + E+ Y           L VR+EESSQKP++
Sbjct: 99  NNQTGFVLSTRAFMAMANHGMGQHILKLGTVEVEYKRIPCEYKNQNLAVRVEESSQKPNY 158

Query: 131 MTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGFD 176
           + +K LYQGGQT+I+ + +  V S +  FM R HG AVW+   AP  A+ F+  V SG+D
Sbjct: 159 LAIKLLYQGGQTEIVAIDVAQVGSSNWNFMKRNHG-AVWDTSRAPNGALQFRFVVTSGYD 218

[Close]

BLAST of Carg26364 vs. TrEMBL
Match: tr|A0A0D2TQB0|A0A0D2TQB0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_012G157800 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.2e-39
Identity = 91/224 (40.62%), Postives = 119/224 (53.12%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GACGYGSLALG   GHLAAGV SLYK+G  CGAC+Q++C                    
Sbjct: 39  SGACGYGSLALGLSGGHLAAGVSSLYKDGAGCGACFQIRCNNSTLCSSKGTNVTITDINH 98

Query: 71  -----------------------------SFELFYL----------LKVRIEESSQKPHH 130
                                        + E+ Y           L VR+EESSQKP++
Sbjct: 99  NNQTGFVLSTRAFMAMANHGMGQHILKLGTVEVEYKRIPCEYKNQNLAVRVEESSQKPNY 158

Query: 131 MTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGFD 176
           + +K LYQGGQT+I+ + +  V S +  FM R HG AVW+   AP  A+ F+  V SG+D
Sbjct: 159 LAIKLLYQGGQTEIVAIDVAQVGSSNWNFMKRNHG-AVWDTSRAPNGALQFRFVVTSGYD 218

[Close]

BLAST of Carg26364 vs. TrEMBL
Match: tr|A0A0B0Q1K6|A0A0B0Q1K6_GOSAR (Expansin-like A2 OS=Gossypium arboreum OX=29729 GN=F383_14243 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.8e-39
Identity = 91/224 (40.62%), Postives = 117/224 (52.23%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           AGACGYGSLALG   GHLAAGV SLYK+G  CGAC+Q++C                    
Sbjct: 38  AGACGYGSLALGLSGGHLAAGVSSLYKDGAGCGACFQIRCKNSTLCSSEGTRITLTDLNH 97

Query: 71  --------SFELFYL-------------------------------LKVRIEESSQKPHH 130
                   S   F                                 L VR+EESSQKP++
Sbjct: 98  NNETDFVLSSRAFMAMANKGIGRDILKLGIVDVEYKRIPCEYKNQNLAVRVEESSQKPNY 157

Query: 131 MTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGFD 176
           + +K +YQGGQT+++ + +  V S +  FMSR HG AVW+    P  A+ F+  V SGFD
Sbjct: 158 LAIKLMYQGGQTEVVAMDVAQVGSANWNFMSRNHG-AVWDTSRVPNGALQFRFVVTSGFD 217

The following BLAST results are available for this feature:

BLAST of Carg26364 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529769.1	3.9e-78	68.00	expansin-like A2 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022928449.1	7.3e-77	67.11	expansin-like A2 isoform X1 [Cucurbita moschata]	[more]
XP_011658619.1	8.1e-68	58.67	PREDICTED: expansin-like A3 [Cucumis sativus]	[more]
XP_008447894.1	2.9e-65	56.44	PREDICTED: expansin-like A3 [Cucumis melo]	[more]
XP_022135692.1	2.9e-65	58.22	expansin-like A2 [Momordica charantia]	[more]

BLAST of Carg26364 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G45960.2	4.9e-35	36.89	expansin-like A3	[more]
AT4G38400.1	6.4e-35	34.07	expansin-like A2	[more]
AT3G45970.1	1.0e-32	32.60	expansin-like A1	[more]
AT4G17030.1	1.5e-12	24.63	expansin-like B1	[more]
AT1G65680.1	2.2e-11	27.05	expansin B2	[more]

BLAST of Carg26364 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LZT5\|EXLA3_ARATH	8.9e-34	36.89	Expansin-like A3 OS=Arabidopsis thaliana OX=3702 GN=EXLA3 PE=2 SV=1	[more]
sp\|Q9SVE5\|EXLA2_ARATH	1.2e-33	34.07	Expansin-like A2 OS=Arabidopsis thaliana OX=3702 GN=EXLA2 PE=2 SV=1	[more]
sp\|Q9LZT4\|EXLA1_ARATH	1.9e-31	32.60	Expansin-like A1 OS=Arabidopsis thaliana OX=3702 GN=EXLA1 PE=2 SV=1	[more]
sp\|Q7XCL0\|EXLA2_ORYSJ	6.0e-30	33.92	Expansin-like A2 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA2 PE=2 SV=1	[more]
sp\|Q10S70\|EXLA1_ORYSJ	2.3e-29	35.84	Expansin-like A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA1 PE=2 SV=1	[more]

BLAST of Carg26364 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BIH4\|A0A1S3BIH4_CUCME	1.9e-65	56.44	expansin-like A3 OS=Cucumis melo OX=3656 GN=LOC103490243 PE=3 SV=1	[more]
tr\|A0A2I4GCG1\|A0A2I4GCG1_9ROSI	2.3e-39	41.33	expansin-like A2 OS=Juglans regia OX=51240 GN=LOC109006647 PE=3 SV=1	[more]
tr\|A0A1U8IUC9\|A0A1U8IUC9_GOSHI	5.2e-39	40.63	expansin-like A2 isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107898542 PE=3 S...	[more]
tr\|A0A0D2TQB0\|A0A0D2TQB0_GOSRA	5.2e-39	40.63	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_012G157800 PE=3 ...	[more]
tr\|A0A0B0Q1K6\|A0A0B0Q1K6_GOSAR	6.8e-39	40.63	Expansin-like A2 OS=Gossypium arboreum OX=29729 GN=F383_14243 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **INTERPRO**
Term	Definition
IPR036908	RlpA-like_sf
IPR007112	Expansin/allergen_DPBB_dom
IPR036749	Expansin_CBD_sf
IPR007117	Expansin_CBD
IPR007118	Expan_Lol_pI

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26364-RA	Carg26364-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007118	Expansin/Lol pI	PRINTS	PR01225	EXPANSNFAMLY	coord: 32..50 score: 39.34 coord: 10..28 score: 35.39
IPR007117	Expansin, cellulose-binding-like domain	PFAM	PF01357	Pollen_allerg_1	coord: 59..142 e-value: 8.6E-11 score: 41.6
IPR007117	Expansin, cellulose-binding-like domain	PROSITE	PS50843	EXPANSIN_CBD	coord: 70..153 score: 14.72
IPR036749	Expansin, cellulose-binding-like domain superfamily	GENE3D	G3DSA:2.60.40.760		coord: 56..157 e-value: 3.1E-23 score: 83.6
IPR036749	Expansin, cellulose-binding-like domain superfamily	SUPERFAMILY	SSF49590	PHL pollen allergen	coord: 59..152
None	No IPR available	PANTHER	PTHR31692:SF4	EXPANSIN-LIKE A1-RELATED	coord: 58..163 coord: 9..51
None	No IPR available	PANTHER	PTHR31692	FAMILY NOT NAMED	coord: 9..51 coord: 58..163
IPR007112	Expansin/pollen allergen, DPBB domain	PROSITE	PS50842	EXPANSIN_EG45	coord: 11..53 score: 13.904
IPR036908	RlpA-like domain superfamily	SUPERFAMILY	SSF50685	Barwin-like endoglucanases	coord: 11..51

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26364	Cla015780	Watermelon (97103) v1	carwmB1048
Carg26364	Csa7G018820	Cucumber (Chinese Long) v2	carcuB1063
Carg26364	MELO3C013299	Melon (DHL92) v3.5.1	carmeB1016
Carg26364	ClCG02G003630	Watermelon (Charleston Gray)	carwcgB1020
Carg26364	CSPI07G01410	Wild cucumber (PI 183967)	carcpiB1084
Carg26364	Cucsa.099300	Cucumber (Gy14) v1	carcgyB1163
Carg26364	CmaCh11G013520	Cucurbita maxima (Rimu)	carcmaB1451
Carg26364	CmoCh11G017670	Cucurbita moschata (Rifu)	carcmoB1405
Carg26364	Lsi11G012480	Bottle gourd (USVL1VR-Ls)	carlsiB956
Carg26364	Cp4.1LG15g06260	Cucurbita pepo (Zucchini)	carcpeB1459
Carg26364	Cp4.1LG04g04730	Cucurbita pepo (Zucchini)	carcpeB1460
Carg26364	CsGy7G001270	Cucumber (Gy14) v2	carcgybB1032
Carg26364	MELO3C013293.2	Melon (DHL92) v3.6.1	carmedB1028
Carg26364	CsaV3_7G001490	Cucumber (Chinese Long) v3	carcucB1096
Carg26364	Cla97C02G030360	Watermelon (97103) v2	carwmbB1106
Carg26364	Bhi05G001391	Wax gourd	carwgoB1228

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26364	Cucurbita maxima (Rimu)	carcmaB1452
Carg26364	Cucurbita moschata (Rifu)	carcmoB1406