Carg26300 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTTACATCCCTCAGCTGGTCTACCGTCTCCACATTAACATTTCATCCTCATGGCTGCTTCTTTGCTACTCCGGGGGCATCCTCTCCTGCGGTTTGGGCTCTGCCATCGCGGGCTTTGTTCTGGGGTCGTGCAGGTGACTCGCCGCTCTTGCTTCACTGCGACGGCGGCGTCTACTCCACCGGACGGGAGCTTAACATCTGCTGAAAATACTGCATCAGTGTCGAGTGCCAGTCAACCAACGAAGTTCCAAAGATGGTGTGAGCCTGATTATCGAAAGTGGAAAGACCAGGAAGACGAAATTCTCAGCGATGTCGAGCCTGTCATATCCCTCACTAAAGAGATTATCCACTCCAATAGGTTCATAATTTTACCCCGAAAGCTTATACTGAATTTTATAGGCATTATCTGTTTGTTTTTTTAGTTGCCGAGGAACTGTGCGAGAAAACAATCAAGTAAAAATATGTTTTTCTTTACATGGTCTGCTCGAATAGAAACTTCCCTAGTCTCGAACAATATATTATATTACAGCAAGATTGGAGAAAAGAATCTTGTTAAAATTCACAAACAGACATACAGAACATGTTTAAGGGTGAGAACCTTGTTAGAAATTTCATTTTTTAATGAACCAAAATATTCCTTCCATGAAACATACATAATACCTTTTCACTCGTGATAAACTCAAGATAATGGAAGATTGTACGTTGATTAGCGGGTAGATGAAAATATAACGTGAAAAGTAAATATGAAGCTGACAATTATACCTTCTTAATAACTGATAATCAGTTATCAGGTTTTCCTTACTTCTAATTTGAATCGACATGAATTGGTATATGTTCTGTGTTTTCATGGCAATATGATAACTACTTTCGTGTATCAACTCCTGGCTAAATCGTTTTAATTGGATCAATGCATTTGATATTTACATACGAGACCCAAAATGTTGAATCTTTCCAAGTACACTGACAACGACGGGAAGCTTTCAAAAACATTACAGCAGAAAGAAAAATGATATTCGAATTAGGTTTCAGTTTATTCTATGTGCCCTTTCTTATCTTTCTTTGTGGATTTGGGATTTGACTTTCTACGGCCTCTGCAAATAACTAGGGGAAGACTTGGTTAATTAATGCGCTCATCTTTCAGTTTTATTTATAGGAGGAGTAGTCAGTTGGACGTTAGGCAGTAGGGCCCTTGAGGTAATTCCGTTTTGATTGGTAGTAGGTGATGTGGAGGAAAAAGGTACTGTGTTTAGTAGTTTCATGTTGGGAGAGATTCAAGCCTCTCGCATTGCTATTTGATCCTCATTGGAATTAGCAAACTTGATTTCTGTTGGAAATTTTATCGACATTTGTTCACATAATATTTGTTAAGGTCTTCTTCCATTTGGTTACTTATTGGAGTCATGATTGTAATCTATATTCTTCTCTTTGATCTTTTCCATTTTGACTAGTATTCAATGCATAATATTATGACAATTGATATCAAAAGTAATGTCCAATGAGACCTAGTGGATGATCAGCAGCTTTTAACCGGTAAAAGCAGTGCTTTCCTCAATGTAGGGTTGGTTGCCAGTGTTCATGAGGTGGTCTCATTAGGCACGTTTCAATACAATATATGGCTCATGTTTTTGTTTTACAATCACACTTTGCTCCTATGATACAATATATGACTTCTATTTTTTGTCCCAGGTATGTGGATGGGGAGCGATTGACATCAGAGGACGAGAGAATTGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGGTTGTGGACTTGAATTCATTATGGTATGCTTTGGTCTGGACTAAATAGTTTAGAGTTCTTGCTATGTTTCAAATATGCAGTTTGCATGCTTTATTTTGTTAGATCATGTAGAAATAAAGCAGATAAAGAAACAAATGACATTTTGTTCGTGGATGTTTCCAAAAGCTTAAAATACAAGAAACTTACGAAATGAATTGGACAACTCTAGCCCTAGAAAATAATTGGATAATAGGTACCCGACTAATATTGTGAGATCCCACCTCGGTTGGGGAGGAGAACTAAATATTCTTTATAAGAGTGTAGAAACCTTTTCCTAACAAACGCGTTTTAAAAATCTGGAGAGGAAACCCGGAAGAGAGTTCAAAGAGGACAATATATGTTAACCATGGGTTTGAGTTGTTACATGTATATATAGCCTTCAGATAAAAAGGATTACAAAGATGGGAAAGAAATTTGAGGTATCCCTCCTTTAACTCTCTCAATTCCAGTTCAAGAGAAACCGTGTAAAATCACATAAATAAATGGTAGCAATTGGCAGAAACCTCTGGCTTTGCACCTCAATCTTTGCCAAAATACTTGCCTGCCCAACTCCCTTCATAACGACCGGATCTAATGAACTTCCTAGCCAATGACTACATAATAACATTTGTTGCATGCCTCCTCAAGTTGCTGCCCATGTGATCAAGTAATAGCCTCCATTTAACAACTATCTCTTTCCATATAAGGGACAGACTTGAATTGTGATTGAGGTCATTAAGCAATTTCATATATACATTACTAATACTGAAGCTTCTCTTAATAATACTTTCGCTGTATGTCATGTGGTACTGGCGTGTCCATTGAAGATCTTTGTGGGCTATCATGCTCTTCTGCGACTGTTTGTACAGAAGAAATGACACAGTTGTAAATGGAACTTATCTTCTGGTGTTGCCAAAGTAGCATACTGGACTCTATGGCTGTGTTTTTGTGTTGCTCAACTATAATCTTGAGTAAGACGTCGTAAATGGAACCACATTTGAAATACGTTGCTGCATGATAGCACCTTGAGTAAGATGTGGTAACTCTGTGGCCCATGGCCTTGCTTTGGCAGTCCTCCACTTCGGCCCTTTCAATGGTTGTCTTATATCCTTTTGGATTCAGGATAGTTGTATCTGTTGGCCAGGCTCTTGGGTTCAATATTATATTCCCTTCACAAAAAATAAACAAAAGTTGAAAATTGCATCTGACCTAATTTTCTGTTTTCCATGACACTTTACCTTCATTGCCCAGCCATACAAAATCATCGCATGCTTTTTTCCTTTGCCCACCCACTTCTCATTTTGAGATGTTGTGCAGGCTACTTTGTTAGACCTCCAATCCAGAAGGTTTGTTCAAGGAAGAACAAAACTGGAATATGGTTGTTTCTAACGTTTAGAAGTATCAGCTTCAGTTAGTTAGTCGGTTTATTTTTTCTTTTAAATTTTTATTTGAGTATTTTGAATTAGCGAGTGATAACTTATTGAGTTAATTATATAACTTCTTAGTTTTGTTTGTATGCAGTGTTTTTGTAAATGCCGGGCATTGTTTTTTTTTTTTCCTTATGTTGTGTGGCTTCTTGAAAAGAATGTGGAGTGATTAATGATCCTCTCAAATGGGGACTCCCATCACACTTTTGATGTCAACAAGGCTTACATCTATTGTCTATAGAGATGTGATGCTTGCCCAGTTTAAAATTGTTCTTTATTTTAAACAATTATTTAAGCTATCTTCTGTCATTGAAGGTTGATCGACACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTGTAAGGACCGATGGTGGATGGATTGACTTCTCGTATCAAAAGTGTCTTCGTGCATATATCCGAAGTAAATATCCATCATATGCAGAGATGTTTATTCGAGAACATTTCAAACGTGGTAGTTGATGAATGTGTGCTATTGTTGATGCTGAGCTGTGGTCTGAATTTGTTTTGATCAAGAAAGATGGATGAATGATTAAATCAATTCTTCATGGTTCGGTGACCTACATGAAGGAAAAATGTACAGATTGTCAATGTAATAGATAGCATGTCCTGGACGCACTGCACAGTTTTTAAGAATGAGAAGAATCGATGATCATTGAAGTGAACCTTCACTTTATTGACTTGCAGCTCTATTATGTTTGTGGTTATGGATAATGGATACTCAAGGCACCATGGAATTTCTTGTATACGTTCGTTCGAGAACGTCGAATGGTCGAATGGGAATATTGATAATGTTTCAAAGTAATATAGGATTGAAAAGTTTAAACTGAT ATTTTACATCCCTCAGCTGGTCTACCGTCTCCACATTAACATTTCATCCTCATGGCTGCTTCTTTGCTACTCCGGGGGCATCCTCTCCTGCGGTTTGGGCTCTGCCATCGCGGGCTTTGTTCTGGGGTCGTGCAGGTGACTCGCCGCTCTTGCTTCACTGCGACGGCGGCGTCTACTCCACCGGACGGGAGCTTAACATCTGCTGAAAATACTGCATCAGTGTCGAGTGCCAGTCAACCAACGAAGTTCCAAAGATGGTGTGAGCCTGATTATCGAAAGTGGAAAGACCAGGAAGACGAAATTCTCAGCGATGTCGAGCCTGTCATATCCCTCACTAAAGAGATTATCCACTCCAATAGGTATGTGGATGGGGAGCGATTGACATCAGAGGACGAGAGAATTGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGGTTGTGGACTTGAATTCATTATGGTTGATCGACACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTGTAAGGACCGATGGTGGATGGATTGACTTCTCGTATCAAAAGTGTCTTCGTGCATATATCCGAAGTAAATATCCATCATATGCAGAGATGTTTATTCGAGAACATTTCAAACGTGGTAGTTGATGAATGTGTGCTATTGTTGATGCTGAGCTGTGGTCTGAATTTGTTTTGATCAAGAAAGATGGATGAATGATTAAATCAATTCTTCATGGTTCGGTGACCTACATGAAGGAAAAATGTACAGATTGTCAATGTAATAGATAGCATGTCCTGGACGCACTGCACAGTTTTTAAGAATGAGAAGAATCGATGATCATTGAAGTGAACCTTCACTTTATTGACTTGCAGCTCTATTATGTTTGTGGTTATGGATAATGGATACTCAAGGCACCATGGAATTTCTTGTATACGTTCGTTCGAGAACGTCGAATGGTCGAATGGGAATATTGATAATGTTTCAAAGTAATATAGGATTGAAAAGTTTAAACTGAT ATGGCTGCTTCTTTGCTACTCCGGGGGCATCCTCTCCTGCGGTTTGGGCTCTGCCATCGCGGGCTTTGTTCTGGGGTCGTGCAGGTGACTCGCCGCTCTTGCTTCACTGCGACGGCGGCGTCTACTCCACCGGACGGGAGCTTAACATCTGCTGAAAATACTGCATCAGTGTCGAGTGCCAGTCAACCAACGAAGTTCCAAAGATGGTGTGAGCCTGATTATCGAAAGTGGAAAGACCAGGAAGACGAAATTCTCAGCGATGTCGAGCCTGTCATATCCCTCACTAAAGAGATTATCCACTCCAATAGGTATGTGGATGGGGAGCGATTGACATCAGAGGACGAGAGAATTGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGGTTGTGGACTTGAATTCATTATGGTTGATCGACACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTGTAAGGACCGATGGTGGATGGATTGACTTCTCGTATCAAAAGTGTCTTCGTGCATATATCCGAAGTAAATATCCATCATATGCAGAGATGTTTATTCGAGAACATTTCAAACGTGGTAGTTGA MAASLLLRGHPLLRFGLCHRGLCSGVVQVTRRSCFTATAASTPPDGSLTSAENTASVSSASQPTKFQRWCEPDYRKWKDQEDEILSDVEPVISLTKEIIHSNRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLEFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRSKYPSYAEMFIREHFKRGS
BLAST of Carg26300 vs. NCBI nr
Match: XP_022936820.1 (protein DCL homolog, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 403.3 bits (1035), Expect = 4.8e-109 Identity = 195/196 (99.49%), Postives = 195/196 (99.49%), Query Frame = 0
BLAST of Carg26300 vs. NCBI nr
Match: XP_023536078.1 (protein DCL homolog, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 396.4 bits (1017), Expect = 5.8e-107 Identity = 193/196 (98.47%), Postives = 194/196 (98.98%), Query Frame = 0
BLAST of Carg26300 vs. NCBI nr
Match: XP_022977112.1 (protein DCL homolog, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 389.0 bits (998), Expect = 9.3e-105 Identity = 189/196 (96.43%), Postives = 193/196 (98.47%), Query Frame = 0
BLAST of Carg26300 vs. NCBI nr
Match: XP_008452601.1 (PREDICTED: protein DCL, chloroplastic [Cucumis melo]) HSP 1 Score: 332.0 bits (850), Expect = 1.3e-87 Identity = 156/196 (79.59%), Postives = 173/196 (88.27%), Query Frame = 0
BLAST of Carg26300 vs. NCBI nr
Match: XP_022135338.1 (protein DCL, chloroplastic isoform X1 [Momordica charantia]) HSP 1 Score: 324.7 bits (831), Expect = 2.1e-85 Identity = 157/196 (80.10%), Postives = 171/196 (87.24%), Query Frame = 0
BLAST of Carg26300 vs. TAIR10
Match: AT3G46630.1 (Protein of unknown function (DUF3223)) HSP 1 Score: 225.3 bits (573), Expect = 3.2e-59 Identity = 121/210 (57.62%), Postives = 150/210 (71.43%), Query Frame = 0
BLAST of Carg26300 vs. TAIR10
Match: AT1G45230.1 (Protein of unknown function (DUF3223)) HSP 1 Score: 133.3 bits (334), Expect = 1.7e-31 Identity = 55/116 (47.41%), Postives = 80/116 (68.97%), Query Frame = 0
BLAST of Carg26300 vs. TAIR10
Match: AT2G40030.1 (nuclear RNA polymerase D1B) HSP 1 Score: 118.2 bits (295), Expect = 5.5e-27 Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 0
BLAST of Carg26300 vs. TAIR10
Match: AT1G63020.1 (nuclear RNA polymerase D1A) HSP 1 Score: 53.5 bits (127), Expect = 1.7e-07 Identity = 36/110 (32.73%), Postives = 56/110 (50.91%), Query Frame = 0
BLAST of Carg26300 vs. Swiss-Prot
Match: sp|Q9C642|DCL_ARATH (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 3.0e-30 Identity = 55/116 (47.41%), Postives = 80/116 (68.97%), Query Frame = 0
BLAST of Carg26300 vs. Swiss-Prot
Match: sp|Q42463|DCL_SOLLC (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 4.3e-29 Identity = 64/174 (36.78%), Postives = 96/174 (55.17%), Query Frame = 0
BLAST of Carg26300 vs. Swiss-Prot
Match: sp|Q5D869|NRPE1_ARATH (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.0e-25 Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 0
BLAST of Carg26300 vs. Swiss-Prot
Match: sp|Q9LQ02|NRPD1_ARATH (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 3.0e-06 Identity = 36/110 (32.73%), Postives = 56/110 (50.91%), Query Frame = 0
BLAST of Carg26300 vs. TrEMBL
Match: tr|A0A1S3BU88|A0A1S3BU88_CUCME (protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493574 PE=4 SV=1) HSP 1 Score: 332.0 bits (850), Expect = 8.9e-88 Identity = 156/196 (79.59%), Postives = 173/196 (88.27%), Query Frame = 0
BLAST of Carg26300 vs. TrEMBL
Match: tr|A0A0A0L0D6|A0A0A0L0D6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641650 PE=4 SV=1) HSP 1 Score: 320.5 bits (820), Expect = 2.7e-84 Identity = 152/196 (77.55%), Postives = 168/196 (85.71%), Query Frame = 0
BLAST of Carg26300 vs. TrEMBL
Match: tr|A0A1U7XY00|A0A1U7XY00_NICSY (protein DCL, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=LOC104238989 PE=4 SV=1) HSP 1 Score: 265.8 bits (678), Expect = 7.8e-68 Identity = 130/197 (65.99%), Postives = 154/197 (78.17%), Query Frame = 0
BLAST of Carg26300 vs. TrEMBL
Match: tr|A0A067KZT4|A0A067KZT4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16094 PE=4 SV=1) HSP 1 Score: 262.7 bits (670), Expect = 6.6e-67 Identity = 128/196 (65.31%), Postives = 157/196 (80.10%), Query Frame = 0
BLAST of Carg26300 vs. TrEMBL
Match: tr|A0A2R6RN49|A0A2R6RN49_ACTCH (Protein DCL like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc04753 PE=4 SV=1) HSP 1 Score: 259.6 bits (662), Expect = 5.6e-66 Identity = 130/200 (65.00%), Postives = 157/200 (78.50%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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