Carg25931 (gene) Silver-seed gourd

Overview
NameCarg25931
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat
LocationCucurbita_argyrosperma_scaffold_263 : 120278 .. 122062 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGTTTGGATTCGATATGCTGCGAGACGAATCTATTTCTCCAAAGTGTATTTGCTATTGTCGTAAAAGGTCATTGGAAGCACCTCTTGAAGCCCAAGATAAGTTCTAGCCTGACATCGATATCCATCCACCAGATTCTCCTCCAGCTATCGTTTTATTGTTCAGGTCCTTCACTTTCTTGGGCGTTTTTCAAGTGGGTTGAGTTGATTCCTGATTACAAACACTCTTTACAATCCTCATGGACCATGATATGCATTCTCACAGAGCACAAACATTTCAGAACTGCACAAAATTTGGTTGAAAAGATTGCACATAAGGATTTCATATCCTCCCCATCGGTTTTAAATGCTTTGGCAACCACCTATGATAATTCTGATGTCAATGCACATATTTTGAGCTGGTTAATGATAATATATGTAAATTGCAAGATGTCCCAGGATGCTATTCAGGTTCTAGAATATATGAGGCTTCATGGATTTAAGCCTCATTTGCATGCTTGTACTGTGCTTTTAAATTCCTTGGCAAAGGATAGGTTAACCGACTTGGTATGGAAGATTTATAAGAAAATGGTTCGAATTGGAGTTGTTCCTAACATTCATATATACAATGTGCTAATTCATGCTTGCTGCAAGTCTGGGGACGTTGAAAAGGCTGAACAACTATTGAGTGAAATGGAATTGAGGTTTGTTTCCCCTGATCTTTACACATACAACACGTTGATATCTTTGTATTGTAAAAAGAGTCTGCATTATGAAGCTTTGTGTGTTCAAGATAGAATGGAAAGGGGAGGAGTGAGCCCTGACATTATAACATATAATTCCCTTATATATGGGTTTTGTAAAGAGGGTAGGATGAGAGAGGCTGTAAAGCTTTTTCGTGAAATTAAGGATGTTTCTCCCAACCATGTTACATACACCACGTTAATTGATGGATATTGTAGAGTGAATGACCTTGAAGAAGCACTAAGATTATGTAAGGTGATGGAAGCTAAGGGTTTGCAACTTGGGGTTGTGACTTATAATTCAATTCTCCGTAAGTTATGCGAGGAAGGCAGGATAAGGGATGCAAATAAACTCTTGAATGAGATGGGTGAGAGGAAAGTTGAACCGGACAATGTCACTTGTAACACATTAGTTAATGCTTACTGCAAAATAGGAGATATGAAATCTGCATTGAAGGTGAAGAGCAAAATGTTGGATGCTGGACTGCAGCTCGACAGCTTCACGTACAAGGCGCTGATTCACGGATTTTATCGAGTAAGAGATATGGAAAGTGCCAAAGAGCTCTTATTTGTCATGCTTGATGCAGGATTATGTCCCGGTTATTGTACATATTCATGGCTAGTTGATGCTTATTGTAAACTAGGAAATGAAGGAGCTATCATAAGTCTACTTGATGAGTTTTTGACAAGAGGTCATTGTGTTGATTTATCAGTTTATAGGGCACTAATAAGAAGGTTGTGTCACAGAGAAAGGGTTGGTTTTGCTGAACAAATATACAGCACCATGCAACAGAAAGGTATATCAGGAGACAGTGTGATATATACAAGCCTGGCATATGCTTACTGGAAAGAGGGGAAGTCGAATCATGCTTCAGAGATGCTGCATGAAATGGCTAAAAGAAGACTAATGGTAACCCTCAAGATTTATAGATGTTTCAATGCTTCTTATGGATGCGACAACCGAATCTTGAATCTATTTTGGGATCATGTTTCAGAGGGAGGCTTACTGTCTAAGAGCATCACCAAGGAAATACAAAAAACGAACTTGCAAACTGGTTGA

mRNA sequence

ATGGCTGGTTTGGATTCGATATGCTGCGAGACGAATCTATTTCTCCAAAGTGTATTTGCTATTGTCGTAAAAGGTCATTGGAAGCACCTCTTGAAGCCCAAGATAAGTTCTAGCCTGACATCGATATCCATCCACCAGATTCTCCTCCAGCTATCGTTTTATTGTTCAGGTCCTTCACTTTCTTGGGCGTTTTTCAAGTGGGTTGAGTTGATTCCTGATTACAAACACTCTTTACAATCCTCATGGACCATGATATGCATTCTCACAGAGCACAAACATTTCAGAACTGCACAAAATTTGGTTGAAAAGATTGCACATAAGGATTTCATATCCTCCCCATCGGTTTTAAATGCTTTGGCAACCACCTATGATAATTCTGATGTCAATGCACATATTTTGAGCTGGTTAATGATAATATATGTAAATTGCAAGATGTCCCAGGATGCTATTCAGGTTCTAGAATATATGAGGCTTCATGGATTTAAGCCTCATTTGCATGCTTGTACTGTGCTTTTAAATTCCTTGGCAAAGGATAGGTTAACCGACTTGGTATGGAAGATTTATAAGAAAATGGTTCGAATTGGAGTTGTTCCTAACATTCATATATACAATGTGCTAATTCATGCTTGCTGCAAGTCTGGGGACGTTGAAAAGGCTGAACAACTATTGAGTGAAATGGAATTGAGGTTTGTTTCCCCTGATCTTTACACATACAACACGTTGATATCTTTGTATTGTAAAAAGAGTCTGCATTATGAAGCTTTGTGTGTTCAAGATAGAATGGAAAGGGGAGGAGTGAGCCCTGACATTATAACATATAATTCCCTTATATATGGGTTTTGTAAAGAGGGTAGGATGAGAGAGGCTGTAAAGCTTTTTCGTGAAATTAAGGATGTTTCTCCCAACCATGTTACATACACCACGTTAATTGATGGATATTGTAGAGTGAATGACCTTGAAGAAGCACTAAGATTATGTAAGGTGATGGAAGCTAAGGGTTTGCAACTTGGGGTTGTGACTTATAATTCAATTCTCCGTAAGTTATGCGAGGAAGGCAGGATAAGGGATGCAAATAAACTCTTGAATGAGATGGGTGAGAGGAAAGTTGAACCGGACAATGTCACTTGTAACACATTAGTTAATGCTTACTGCAAAATAGGAGATATGAAATCTGCATTGAAGGTGAAGAGCAAAATGTTGGATGCTGGACTGCAGCTCGACAGCTTCACGTACAAGGCGCTGATTCACGGATTTTATCGAGTAAGAGATATGGAAAGTGCCAAAGAGCTCTTATTTGTCATGCTTGATGCAGGATTATGTCCCGGTTATTGTACATATTCATGGCTAGTTGATGCTTATTGTAAACTAGGAAATGAAGGAGCTATCATAAGTCTACTTGATGAGTTTTTGACAAGAGGTCATTGTGTTGATTTATCAGTTTATAGGGCACTAATAAGAAGGTTGTGTCACAGAGAAAGGGTTGGTTTTGCTGAACAAATATACAGCACCATGCAACAGAAAGGTATATCAGGAGACAGTGTGATATATACAAGCCTGGCATATGCTTACTGGAAAGAGGGGAAGTCGAATCATGCTTCAGAGATGCTGCATGAAATGGCTAAAAGAAGACTAATGGTAACCCTCAAGATTTATAGATGTTTCAATGCTTCTTATGGATGCGACAACCGAATCTTGAATCTATTTTGGGATCATGTTTCAGAGGGAGGCTTACTGTCTAAGAGCATCACCAAGGAAATACAAAAAACGAACTTGCAAACTGGTTGA

Coding sequence (CDS)

ATGGCTGGTTTGGATTCGATATGCTGCGAGACGAATCTATTTCTCCAAAGTGTATTTGCTATTGTCGTAAAAGGTCATTGGAAGCACCTCTTGAAGCCCAAGATAAGTTCTAGCCTGACATCGATATCCATCCACCAGATTCTCCTCCAGCTATCGTTTTATTGTTCAGGTCCTTCACTTTCTTGGGCGTTTTTCAAGTGGGTTGAGTTGATTCCTGATTACAAACACTCTTTACAATCCTCATGGACCATGATATGCATTCTCACAGAGCACAAACATTTCAGAACTGCACAAAATTTGGTTGAAAAGATTGCACATAAGGATTTCATATCCTCCCCATCGGTTTTAAATGCTTTGGCAACCACCTATGATAATTCTGATGTCAATGCACATATTTTGAGCTGGTTAATGATAATATATGTAAATTGCAAGATGTCCCAGGATGCTATTCAGGTTCTAGAATATATGAGGCTTCATGGATTTAAGCCTCATTTGCATGCTTGTACTGTGCTTTTAAATTCCTTGGCAAAGGATAGGTTAACCGACTTGGTATGGAAGATTTATAAGAAAATGGTTCGAATTGGAGTTGTTCCTAACATTCATATATACAATGTGCTAATTCATGCTTGCTGCAAGTCTGGGGACGTTGAAAAGGCTGAACAACTATTGAGTGAAATGGAATTGAGGTTTGTTTCCCCTGATCTTTACACATACAACACGTTGATATCTTTGTATTGTAAAAAGAGTCTGCATTATGAAGCTTTGTGTGTTCAAGATAGAATGGAAAGGGGAGGAGTGAGCCCTGACATTATAACATATAATTCCCTTATATATGGGTTTTGTAAAGAGGGTAGGATGAGAGAGGCTGTAAAGCTTTTTCGTGAAATTAAGGATGTTTCTCCCAACCATGTTACATACACCACGTTAATTGATGGATATTGTAGAGTGAATGACCTTGAAGAAGCACTAAGATTATGTAAGGTGATGGAAGCTAAGGGTTTGCAACTTGGGGTTGTGACTTATAATTCAATTCTCCGTAAGTTATGCGAGGAAGGCAGGATAAGGGATGCAAATAAACTCTTGAATGAGATGGGTGAGAGGAAAGTTGAACCGGACAATGTCACTTGTAACACATTAGTTAATGCTTACTGCAAAATAGGAGATATGAAATCTGCATTGAAGGTGAAGAGCAAAATGTTGGATGCTGGACTGCAGCTCGACAGCTTCACGTACAAGGCGCTGATTCACGGATTTTATCGAGTAAGAGATATGGAAAGTGCCAAAGAGCTCTTATTTGTCATGCTTGATGCAGGATTATGTCCCGGTTATTGTACATATTCATGGCTAGTTGATGCTTATTGTAAACTAGGAAATGAAGGAGCTATCATAAGTCTACTTGATGAGTTTTTGACAAGAGGTCATTGTGTTGATTTATCAGTTTATAGGGCACTAATAAGAAGGTTGTGTCACAGAGAAAGGGTTGGTTTTGCTGAACAAATATACAGCACCATGCAACAGAAAGGTATATCAGGAGACAGTGTGATATATACAAGCCTGGCATATGCTTACTGGAAAGAGGGGAAGTCGAATCATGCTTCAGAGATGCTGCATGAAATGGCTAAAAGAAGACTAATGGTAACCCTCAAGATTTATAGATGTTTCAATGCTTCTTATGGATGCGACAACCGAATCTTGAATCTATTTTGGGATCATGTTTCAGAGGGAGGCTTACTGTCTAAGAGCATCACCAAGGAAATACAAAAAACGAACTTGCAAACTGGTTGA

Protein sequence

MAGLDSICCETNLFLQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILLQLSFYCSGPSLSWAFFKWVELIPDYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLNALATTYDNSDVNAHILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRLTDLVWKIYKKMVRIGVVPNIHIYNVLIHACCKSGDVEKAEQLLSEMELRFVSPDLYTYNTLISLYCKKSLHYEALCVQDRMERGGVSPDIITYNSLIYGFCKEGRMREAVKLFREIKDVSPNHVTYTTLIDGYCRVNDLEEALRLCKVMEAKGLQLGVVTYNSILRKLCEEGRIRDANKLLNEMGERKVEPDNVTCNTLVNAYCKIGDMKSALKVKSKMLDAGLQLDSFTYKALIHGFYRVRDMESAKELLFVMLDAGLCPGYCTYSWLVDAYCKLGNEGAIISLLDEFLTRGHCVDLSVYRALIRRLCHRERVGFAEQIYSTMQQKGISGDSVIYTSLAYAYWKEGKSNHASEMLHEMAKRRLMVTLKIYRCFNASYGCDNRILNLFWDHVSEGGLLSKSITKEIQKTNLQTG
Homology
[Close]
BLAST of Carg25931 vs. NCBI nr
Match: XP_022957214.1 (pentatricopeptide repeat-containing protein At5g38730 [Cucurbita moschata])

HSP 1 Score: 439.9 bits (1130), Expect = 1.4e-119
Identity = 594/594 (100.00%), Postives = 594/594 (100.00%), Query Frame = 0 

Query: 1   MAGLDSICCETNLFLQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILLQLSFYCSGPSL 60
           MAGLDSICCETNLFLQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILLQLSFYCSGPSL
Sbjct: 1   MAGLDSICCETNLFLQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILLQLSFYCSGPSL 60

Query: 61  SWAFFKWVELIPDYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLNALA 120
           SWAFFKWVELIPDYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLNALA
Sbjct: 61  SWAFFKWVELIPDYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLNALA 120

Query: 121 TTYDNSDVNAHILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRL 180
           TTYDNSDVNAHILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRL
Sbjct: 121 TTYDNSDVNAHILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRL 180

Query: 181 TDLVWKIYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           TDLVWKIYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 TDLVWKIYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLFREIKXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLFREIKXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLFREIKXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXVMXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXVMXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXVMXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAYWKEGKSNHASEMLHEMA 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAYWKEGKSNHASEMLHEMA
Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAYWKEGKSNHASEMLHEMA 540

Query: 541 KRRLMVTLKIYRCFNASYGCDNRILNLFWDHVSEGGLLSKSITKEIQKTNLQTG 595
           KRRLMVTLKIYRCFNASYGCDNRILNLFWDHVSEGGLLSKSITKEIQKTNLQTG
Sbjct: 541 KRRLMVTLKIYRCFNASYGCDNRILNLFWDHVSEGGLLSKSITKEIQKTNLQTG 594

[Close]
BLAST of Carg25931 vs. NCBI nr
Match: XP_023547207.1 (pentatricopeptide repeat-containing protein At5g38730 [Cucurbita pepo subsp. pepo] >XP_023547281.1 pentatricopeptide repeat-containing protein At5g38730 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 428.3 bits (1100), Expect = 4.2e-116
Identity = 590/594 (99.33%), Postives = 590/594 (99.33%), Query Frame = 0 

Query: 1   MAGLDSICCETNLFLQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILLQLSFYCSGPSL 60
           MAGLDSICCETNLFLQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILLQLSFYCSGPSL
Sbjct: 1   MAGLDSICCETNLFLQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILLQLSFYCSGPSL 60

Query: 61  SWAFFKWVELIPDYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLNALA 120
           SWAFFKWVELIPDYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLNALA
Sbjct: 61  SWAFFKWVELIPDYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLNALA 120

Query: 121 TTYDNSDVNAHILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRL 180
           TTYDNSDVNAHILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRL
Sbjct: 121 TTYDNSDVNAHILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRL 180

Query: 181 TDLVWKIYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           TDLVWKIYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 TDLVWKIYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLFREIKXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLFREIKXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLFREIKXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXVMXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXVMXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXVMXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAYWKEGKSNHASEMLHEMA 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  YWKEGKSN ASEMLHEMA
Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYWKEGKSNLASEMLHEMA 540

Query: 541 KRRLMVTLKIYRCFNASYGCDNRILNLFWDHVSEGGLLSKSITKEIQKTNLQTG 595
           KRRLMVTLKIYRCFNASYGCDNRILNLFWDHVSEGGLLSKSITKEIQK NLQTG
Sbjct: 541 KRRLMVTLKIYRCFNASYGCDNRILNLFWDHVSEGGLLSKSITKEIQKMNLQTG 594

[Close]
BLAST of Carg25931 vs. NCBI nr
Match: XP_022997664.1 (pentatricopeptide repeat-containing protein At5g38730 [Cucurbita maxima])

HSP 1 Score: 418.3 bits (1074), Expect = 4.3e-113
Identity = 584/594 (98.32%), Postives = 587/594 (98.82%), Query Frame = 0 

Query: 1   MAGLDSICCETNLFLQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILLQLSFYCSGPSL 60
           MAGLDSICCETNLFLQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILLQLSFYCSGPSL
Sbjct: 1   MAGLDSICCETNLFLQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILLQLSFYCSGPSL 60

Query: 61  SWAFFKWVELIPDYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLNALA 120
           SWAFFKWVELIPDYKHSLQSSWTMICILTEHKHF+TAQNLVEKIAHKDFISSP VLNALA
Sbjct: 61  SWAFFKWVELIPDYKHSLQSSWTMICILTEHKHFKTAQNLVEKIAHKDFISSPLVLNALA 120

Query: 121 TTYDNSDVNAHILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRL 180
           TTYDNSDVNAHILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRL
Sbjct: 121 TTYDNSDVNAHILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRL 180

Query: 181 TDLVWKIYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           TDLVWKIYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 TDLVWKIYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLFREIKXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLFREIKXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLFREIKXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXVMXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXVMXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXVMXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAYWKEGKSNHASEMLHEMA 540
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  YWKEGKSN ASEMLHEMA
Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYWKEGKSNLASEMLHEMA 540

Query: 541 KRRLMVTLKIYRCFNASYGCDNRILNLFWDHVSEGGLLSKSITKEIQKTNLQTG 595
           KRRLMVTLKIYRCFNASYGCDN +L+LFWDH SEGGLLSKSITKEIQK NLQTG
Sbjct: 541 KRRLMVTLKIYRCFNASYGCDNHMLHLFWDHASEGGLLSKSITKEIQKMNLQTG 594

[Close]
BLAST of Carg25931 vs. NCBI nr
Match: XP_022157769.1 (pentatricopeptide repeat-containing protein At5g38730 [Momordica charantia] >XP_022157770.1 pentatricopeptide repeat-containing protein At5g38730 [Momordica charantia] >XP_022157771.1 pentatricopeptide repeat-containing protein At5g38730 [Momordica charantia])

HSP 1 Score: 363.2 bits (931), Expect = 1.7e-96
Identity = 520/594 (87.54%), Postives = 535/594 (90.07%), Query Frame = 0 

Query: 1   MAGLDSICCETNLFLQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILLQLSFYCSGPSL 60
           MAGL S+  ETNLF+QSVFAIVVKGHWKHLLKPKISSSLTSISIHQIL +LSFYCSGPSL
Sbjct: 1   MAGLVSLSGETNLFVQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILFRLSFYCSGPSL 60

Query: 61  SWAFFKWVELIPDYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLNALA 120
           SWAFFKWVELIPDYKHSLQSSWTM+CILTEH+HF+TAQNL+E IA KDF+SSPSVLN LA
Sbjct: 61  SWAFFKWVELIPDYKHSLQSSWTMVCILTEHRHFKTAQNLLENIARKDFMSSPSVLNCLA 120

Query: 121 TTYDNSDVNAHILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRL 180
           TT DN DVNAHI SWLMIIYVNCKMSQDAIQVLEYMRLHG +PHLHACTVLLNSLAKDRL
Sbjct: 121 TTCDNPDVNAHIFSWLMIIYVNCKMSQDAIQVLEYMRLHGIRPHLHACTVLLNSLAKDRL 180

Query: 181 TDLVWKIYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           TD+VWKI  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 TDMVWKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLFREIKXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KLFREIK  X
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLFREIKDAX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXVMXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXVM A      XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXVMEAKGLHLGXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAYWKEGKSNHASEMLHEMA 540
           XXXXXXXXXXXX                            YAYWKEGKSN A  ML EM 
Sbjct: 481 XXXXXXXXXXXXKVGYAEKIYHSMEHRGISGDSVIYTSLAYAYWKEGKSNLALGMLCEMT 540

Query: 541 KRRLMVTLKIYRCFNASYGCDNRILNLFWDHVSEGGLLSKSITKEIQKTNLQTG 595
           KRRLMVTLKIYRCFNASYGCDNRIL+LFWDHV+E GL+S+SIT EI+K NLQTG
Sbjct: 541 KRRLMVTLKIYRCFNASYGCDNRILHLFWDHVAERGLMSRSITVEIRKMNLQTG 594

[Close]
BLAST of Carg25931 vs. NCBI nr
Match: XP_004140465.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Cucumis sativus] >KGN50851.1 hypothetical protein Csa_5G289620 [Cucumis sativus])

HSP 1 Score: 329.7 bits (844), Expect = 2.0e-86
Identity = 464/577 (80.42%), Postives = 478/577 (82.84%), Query Frame = 0 

Query: 12  NLFLQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILLQLSFYCSGPSLSWAFFKWVELI 71
           NL +QS+FA+VVKGHW HLLKPKISSSLTS SIHQILL+LSFYCSGPSLSWAFFKWVELI
Sbjct: 2   NLLVQSMFAVVVKGHWNHLLKPKISSSLTSKSIHQILLRLSFYCSGPSLSWAFFKWVELI 61

Query: 72  PDYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLNALATTYDNSDVNAH 131
           PDYKHSLQSSW MI ILTEHKHF+TAQ L+EKIAHKDFISSP VLNAL T+YDN DVNAH
Sbjct: 62  PDYKHSLQSSWAMIFILTEHKHFKTAQGLLEKIAHKDFISSPLVLNALVTSYDNPDVNAH 121

Query: 132 ILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRLTDLVWKIYKXX 191
           ILSWLMIIYVNCKM QDAIQVLEYMRLHGFKP+LHACTVLLNSLAKDRLTD VWK YK  
Sbjct: 122 ILSWLMIIYVNCKMPQDAIQVLEYMRLHGFKPNLHACTVLLNSLAKDRLTDTVWKSYKKM 181

Query: 192 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 251
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 182 IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 241

Query: 252 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLFREIKXXXXXXXXXXXXXX 311
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     VKLFREI XXXXXXXXXXXXXX
Sbjct: 242 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMREAVKLFREIXXXXXXXXXXXXXXX 301

Query: 312 XXXXXXXXXXXXXXXXVMXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 371
           XXXXXXXXXXXXXXXXVM A      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 302 XXXXXXXXXXXXXXXXVMEAKGLHLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 361

Query: 372 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 431
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 362 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421

Query: 432 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 491
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX                                
Sbjct: 422 XXXXXXXXXXXXXXXXXXXXXXXXXXXXGAIISLLDEFLTKGYCVDLSVCRALIRRLCHQ 481

Query: 492 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAYWKEGKSNHASEMLHEMAKRRLMVTLKIY 551
                                        YAYWK+GKSN  SEML EM KR L++ LK+Y
Sbjct: 482 ERVGFAEKIYSTMHLRGVSGDSVIYTSLAYAYWKDGKSNLVSEMLSEMTKRSLLINLKLY 541

Query: 552 RCFNASYGCDNRILNLFWDHVSEGGLLSKSITKEIQK 589
           RCFNASYG  N IL+LFWDHV+E GLLSKSITKEIQK
Sbjct: 542 RCFNASYGPHNSILHLFWDHVAERGLLSKSITKEIQK 578

[Close]
BLAST of Carg25931 vs. TAIR10
Match: AT5G38730.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 179.5 bits (454), Expect = 6.1e-45
Identity = 94/179 (52.51%), Postives = 122/179 (68.16%), Query Frame = 0 

Query: 13  LFLQSVFAIVVKGHWKHLLKPKISSSLTSISI-HQILLQLSFYC--SGPSLSWAFFKWVE 72
           L  QS+ A V+KG+WK++LK K+ S L   +I  Q++ +LS +    GPSLSW+FF W +
Sbjct: 12  LIAQSICATVLKGNWKNILKHKVDSGLLKSAITTQVISELSLFSGYGGPSLSWSFFIWTD 71

Query: 73  LIPDYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLNAL--ATTYDNSD 132
            +P  KHSLQSSW MI ILT+HKHF+TA  L++K+A ++ +SSP VL +L    + D  D
Sbjct: 72  SLPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLRSLVGGVSEDPED 131

Query: 133 VNAHILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRLTDLVWK 187
           V +H+ SWLMI Y    M  D+I V E +R  G KPHL ACTVLLNSL K RLTD VWK
Sbjct: 132 V-SHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWK 189

[Close]
BLAST of Carg25931 vs. TAIR10
Match: AT5G55840.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-07
Identity = 37/132 (28.03%), Postives = 64/132 (48.48%), Query Frame = 0 

Query: 60  LSWAFFKWVELIP--DYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLN 119
           L+  F KWV   P  +  H +Q       IL   + +  A++++++++     SS  V  
Sbjct: 92  LALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSS-FVFG 151

Query: 120 ALATTYDNSDVNAHILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAK 179
           AL TTY   + N  +   L+ +Y+   M QD++++   M L+GF P ++ C  +L S+ K
Sbjct: 152 ALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVK 211

Query: 180 DRLTDLVWKIYK 190
                 VW   K
Sbjct: 212 SGEDVSVWSFLK 222

[Close]
BLAST of Carg25931 vs. Swiss-Prot
Match: sp|Q9FKR3|PP404_ARATH (Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana OX=3702 GN=At5g38730 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.1e-43
Identity = 94/179 (52.51%), Postives = 122/179 (68.16%), Query Frame = 0 

Query: 13  LFLQSVFAIVVKGHWKHLLKPKISSSLTSISI-HQILLQLSFYC--SGPSLSWAFFKWVE 72
           L  QS+ A V+KG+WK++LK K+ S L   +I  Q++ +LS +    GPSLSW+FF W +
Sbjct: 12  LIAQSICATVLKGNWKNILKHKVDSGLLKSAITTQVISELSLFSGYGGPSLSWSFFIWTD 71

Query: 73  LIPDYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLNAL--ATTYDNSD 132
            +P  KHSLQSSW MI ILT+HKHF+TA  L++K+A ++ +SSP VL +L    + D  D
Sbjct: 72  SLPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLRSLVGGVSEDPED 131

Query: 133 VNAHILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRLTDLVWK 187
           V +H+ SWLMI Y    M  D+I V E +R  G KPHL ACTVLLNSL K RLTD VWK
Sbjct: 132 V-SHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWK 189

[Close]
BLAST of Carg25931 vs. Swiss-Prot
Match: sp|Q9LVQ5|PP432_ARATH (Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana OX=3702 GN=At5g55840 PE=3 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-06
Identity = 37/132 (28.03%), Postives = 64/132 (48.48%), Query Frame = 0 

Query: 60  LSWAFFKWVELIP--DYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLN 119
           L+  F KWV   P  +  H +Q       IL   + +  A++++++++     SS  V  
Sbjct: 52  LALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSS-FVFG 111

Query: 120 ALATTYDNSDVNAHILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAK 179
           AL TTY   + N  +   L+ +Y+   M QD++++   M L+GF P ++ C  +L S+ K
Sbjct: 112 ALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVK 171

Query: 180 DRLTDLVWKIYK 190
                 VW   K
Sbjct: 172 SGEDVSVWSFLK 182

[Close]
BLAST of Carg25931 vs. TrEMBL
Match: tr|A0A0A0KSX6|A0A0A0KSX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G289620 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 1.3e-86
Identity = 464/577 (80.42%), Postives = 478/577 (82.84%), Query Frame = 0 

Query: 12  NLFLQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILLQLSFYCSGPSLSWAFFKWVELI 71
           NL +QS+FA+VVKGHW HLLKPKISSSLTS SIHQILL+LSFYCSGPSLSWAFFKWVELI
Sbjct: 2   NLLVQSMFAVVVKGHWNHLLKPKISSSLTSKSIHQILLRLSFYCSGPSLSWAFFKWVELI 61

Query: 72  PDYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLNALATTYDNSDVNAH 131
           PDYKHSLQSSW MI ILTEHKHF+TAQ L+EKIAHKDFISSP VLNAL T+YDN DVNAH
Sbjct: 62  PDYKHSLQSSWAMIFILTEHKHFKTAQGLLEKIAHKDFISSPLVLNALVTSYDNPDVNAH 121

Query: 132 ILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRLTDLVWKIYKXX 191
           ILSWLMIIYVNCKM QDAIQVLEYMRLHGFKP+LHACTVLLNSLAKDRLTD VWK YK  
Sbjct: 122 ILSWLMIIYVNCKMPQDAIQVLEYMRLHGFKPNLHACTVLLNSLAKDRLTDTVWKSYKKM 181

Query: 192 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 251
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 182 IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 241

Query: 252 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLFREIKXXXXXXXXXXXXXX 311
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     VKLFREI XXXXXXXXXXXXXX
Sbjct: 242 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMREAVKLFREIXXXXXXXXXXXXXXX 301

Query: 312 XXXXXXXXXXXXXXXXVMXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 371
           XXXXXXXXXXXXXXXXVM A      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 302 XXXXXXXXXXXXXXXXVMEAKGLHLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 361

Query: 372 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 431
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 362 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421

Query: 432 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 491
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX                                
Sbjct: 422 XXXXXXXXXXXXXXXXXXXXXXXXXXXXGAIISLLDEFLTKGYCVDLSVCRALIRRLCHQ 481

Query: 492 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAYWKEGKSNHASEMLHEMAKRRLMVTLKIY 551
                                        YAYWK+GKSN  SEML EM KR L++ LK+Y
Sbjct: 482 ERVGFAEKIYSTMHLRGVSGDSVIYTSLAYAYWKDGKSNLVSEMLSEMTKRSLLINLKLY 541

Query: 552 RCFNASYGCDNRILNLFWDHVSEGGLLSKSITKEIQK 589
           RCFNASYG  N IL+LFWDHV+E GLLSKSITKEIQK
Sbjct: 542 RCFNASYGPHNSILHLFWDHVAERGLLSKSITKEIQK 578

[Close]
BLAST of Carg25931 vs. TrEMBL
Match: tr|A0A1S3CNA4|A0A1S3CNA4_CUCME (pentatricopeptide repeat-containing protein At5g38730 OS=Cucumis melo OX=3656 GN=LOC103502880 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 4.0e-83
Identity = 154/173 (89.02%), Postives = 160/173 (92.49%), Query Frame = 0 

Query: 12  NLFLQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILLQLSFYCSGPSLSWAFFKWVELI 71
           NL LQS+FA+VVKGHW HLLKPKISSSLTS SIHQIL +LSFYCSGPSLSWAFFKWVELI
Sbjct: 2   NLLLQSMFAVVVKGHWNHLLKPKISSSLTSKSIHQILFRLSFYCSGPSLSWAFFKWVELI 61

Query: 72  PDYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLNALATTYDNSDVNAH 131
           PDYKHSLQSSW MI ILTEHKHF+TAQ L+EKIAHKDFISSP VLNAL T+YDN DVNAH
Sbjct: 62  PDYKHSLQSSWAMIFILTEHKHFKTAQGLLEKIAHKDFISSPLVLNALVTSYDNPDVNAH 121

Query: 132 ILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRLTDLV 185
           ILSWLMIIYVNCKM QDAIQV EYMRLHGFKPHLHACTVLLNSLAKDRLTD V
Sbjct: 122 ILSWLMIIYVNCKMPQDAIQVFEYMRLHGFKPHLHACTVLLNSLAKDRLTDTV 174

[Close]
BLAST of Carg25931 vs. TrEMBL
Match: tr|A0A2P5CAE1|A0A2P5CAE1_PARAD (Tetratricopeptide-like helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_169500 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 3.5e-63
Identity = 121/178 (67.98%), Postives = 146/178 (82.02%), Query Frame = 0 

Query: 14  FLQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILLQLSFYCSGPSLSWAFFKWVELIP- 73
           F+Q V AIV+KG W +L  PK+ SSL+SI+IHQ+LLQLS +  GPS SWAFFKWVE IP 
Sbjct: 16  FIQGVCAIVLKGQWSNLFNPKLGSSLSSITIHQVLLQLSLHGYGPSPSWAFFKWVESIPN 75

Query: 74  -DYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLNALATTYDNSDVNAH 133
            +YKHSLQ SWTMI ILT+H+HFR AQ L+EKI+ +DF+ SPSVL+AL T +D+ D N+H
Sbjct: 76  SNYKHSLQCSWTMIHILTKHRHFRPAQQLLEKISQRDFLPSPSVLSALVTIHDDPDANSH 135

Query: 134 ILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRLTDLVWKIYK 190
           +LSWL+I+YVN KM Q+AIQV  +MRLH FKPHL ACTVLLNSL KDRLTDL WK+YK
Sbjct: 136 VLSWLVIVYVNLKMIQEAIQVFNHMRLHRFKPHLPACTVLLNSLVKDRLTDLAWKLYK 193

[Close]
BLAST of Carg25931 vs. TrEMBL
Match: tr|A0A2P6PQG6|A0A2P6PQG6_ROSCH (Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0269561 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.0e-62
Identity = 122/180 (67.78%), Postives = 146/180 (81.11%), Query Frame = 0 

Query: 1   MAGLDSICCETNLFLQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILLQLSFYCSGPSL 60
           MA    +  ET L +Q +FAIVVKGHW HLLKPK+ S LTS +IHQ+LLQLS +   PSL
Sbjct: 18  MAASVPLSGETQL-IQGLFAIVVKGHWNHLLKPKLGSCLTSSTIHQVLLQLSLFGYSPSL 77

Query: 61  SWAFFKWVELIPDYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLNALA 120
           S +FFKWVE +P+YKHSLQ SWTM+ ILT+H HF+TA  L+EKIA +DF+SSP+VLNAL 
Sbjct: 78  SLSFFKWVESVPNYKHSLQCSWTMVHILTKHGHFKTAHQLLEKIAFRDFLSSPTVLNALI 137

Query: 121 TTYDNSDVNAHILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRL 180
            T D+ DVN+H+LSWL+I Y N KM+QDAIQVLE+MR+HGFKPHLHACTVLLN L KDRL
Sbjct: 138 PTQDDPDVNSHVLSWLVITYANSKMTQDAIQVLEHMRVHGFKPHLHACTVLLNCLVKDRL 196

[Close]
BLAST of Carg25931 vs. TrEMBL
Match: tr|A0A2P5BAN2|A0A2P5BAN2_9ROSA (Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_327630 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.1e-61
Identity = 119/175 (68.00%), Postives = 143/175 (81.71%), Query Frame = 0 

Query: 14  FLQSVFAIVVKGHWKHLLKPKISSSLTSISIHQILLQLSFYCSGPSLSWAFFKWVELIP- 73
           F+Q V AIV+KG W +L  PK+ SSL+S +IHQ+LLQLS +  GPS SWAFFKWVE IP 
Sbjct: 16  FIQGVCAIVLKGQWSNLFNPKLGSSLSSTTIHQVLLQLSLHGYGPSPSWAFFKWVESIPN 75

Query: 74  -DYKHSLQSSWTMICILTEHKHFRTAQNLVEKIAHKDFISSPSVLNALATTYDNSDVNAH 133
            +YKHSLQ SWTMI +LT+H+HFR AQ L+EKIA +DF+SSPSVL+AL T +D+ D N+H
Sbjct: 76  SNYKHSLQCSWTMIHVLTKHRHFRPAQQLLEKIAQRDFLSSPSVLSALVTIHDDPDANSH 135

Query: 134 ILSWLMIIYVNCKMSQDAIQVLEYMRLHGFKPHLHACTVLLNSLAKDRLTDLVWK 187
           +LSWL+I+YVN KM QDAIQV ++MRL GFKPHL ACTVLLNSL KD LTDL WK
Sbjct: 136 VLSWLVIVYVNLKMIQDAIQVFDHMRLRGFKPHLPACTVLLNSLVKDGLTDLAWK 190

The following BLAST results are available for this feature:
BLAST of Carg25931 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022957214.11.4e-119100.00pentatricopeptide repeat-containing protein At5g38730 [Cucurbita moschata][more]
XP_023547207.14.2e-11699.33pentatricopeptide repeat-containing protein At5g38730 [Cucurbita pepo subsp. pep... [more]
XP_022997664.14.3e-11398.32pentatricopeptide repeat-containing protein At5g38730 [Cucurbita maxima][more]
XP_022157769.11.7e-9687.54pentatricopeptide repeat-containing protein At5g38730 [Momordica charantia] >XP_... [more]
XP_004140465.12.0e-8680.42PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Cucumis sativu... [more]
BLAST of Carg25931 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G38730.16.1e-4552.51Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G55840.12.3e-0728.03Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Carg25931 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FKR3|PP404_ARATH1.1e-4352.51Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana OX... [more]
sp|Q9LVQ5|PP432_ARATH4.1e-0628.03Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg25931 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KSX6|A0A0A0KSX6_CUCSA1.3e-8680.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G289620 PE=4 SV=1[more]
tr|A0A1S3CNA4|A0A1S3CNA4_CUCME4.0e-8389.02pentatricopeptide repeat-containing protein At5g38730 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A2P5CAE1|A0A2P5CAE1_PARAD3.5e-6367.98Tetratricopeptide-like helical domain containing protein OS=Parasponia andersoni... [more]
tr|A0A2P6PQG6|A0A2P6PQG6_ROSCH1.0e-6267.78Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinen... [more]
tr|A0A2P5BAN2|A0A2P5BAN2_9ROSA1.1e-6168.00Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_327630 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25931-RACarg25931-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 317..421
e-value: 3.8E-29
score: 103.3
coord: 229..315
e-value: 5.2E-29
score: 102.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 422..564
e-value: 1.1E-24
score: 89.5
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILYSSF48452TPR-likecoord: 155..165
coord: 270..409
coord: 516..535
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 168..196
e-value: 0.034
score: 14.3
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 265..296
e-value: 2.5E-14
score: 52.6
coord: 298..330
e-value: 1.8E-12
score: 46.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 198..247
e-value: 5.3E-16
score: 58.4
coord: 337..385
e-value: 7.1E-16
score: 58.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 236..270
e-value: 8.1E-7
score: 26.8
coord: 304..335
e-value: 3.1E-8
score: 31.3
coord: 167..199
e-value: 3.0E-4
score: 18.8
coord: 339..372
e-value: 5.1E-8
score: 30.6
coord: 409..441
e-value: 5.4E-4
score: 18.0
coord: 202..234
e-value: 8.8E-10
score: 36.2
coord: 374..407
e-value: 1.9E-7
score: 28.8
coord: 480..512
e-value: 0.0016
score: 16.5
coord: 271..298
e-value: 3.0E-8
score: 31.3
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 500..545
e-value: 0.0014
score: 18.5
coord: 394..453
e-value: 7.4E-8
score: 32.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 372..406
score: 11.586
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 442..476
score: 7.465
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 269..299
score: 11.685
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 199..233
score: 12.66
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 407..441
score: 10.742
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 302..336
score: 12.277
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 129..163
score: 8.353
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 234..268
score: 11.751
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 164..198
score: 9.186
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 512..546
score: 9.021
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 337..371
score: 11.97
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 477..511
score: 9.175
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 9..590
NoneNo IPR availablePANTHERPTHR24015:SF279SUBFAMILY NOT NAMEDcoord: 9..590

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg25931CmaCh04G018740Cucurbita maxima (Rimu)carcmaB0495
Carg25931CmoCh04G019730Cucurbita moschata (Rifu)carcmoB0478
Carg25931Cp4.1LG01g16620Cucurbita pepo (Zucchini)carcpeB0492
Carg25931Bhi07G000116Wax gourdcarwgoB0436
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg25931Cucumber (Gy14) v2carcgybB0364
Carg25931Wild cucumber (PI 183967)carcpiB0389
Carg25931Cucumber (Chinese Long) v3carcucB0388
Carg25931Watermelon (Charleston Gray)carwcgB0344
Carg25931Watermelon (97103) v1carwmB0343
Carg25931Watermelon (97103) v2carwmbB0367
Carg25931Watermelon (97103) v2carwmbB0368