Carg25887 (gene) Silver-seed gourd

Overview
NameCarg25887
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRNA binding protein, putative
LocationCucurbita_argyrosperma_scaffold_350 : 62214 .. 64532 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTTCCATATATCTTTACTCGTAGATACAAGGGCATAGTTTCACTCTGCTACTACTACTATTATGGCGGCAATCAGAAAAGCGATGGCGATGTCCTCCGATCGTCGCGTTCTTACCTCTTTATTTCATCCGCCGTCTCGTCTCATCTCTTTCAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGTAAACTCAACATTCCTCCTCTCTATTCTTCTGTTGATTTTTCAGTTCATTATATCCACCTAATGTTGCAGTCTATGTTTCATAATTGAAATTGCAATTTTTGCTGCGAGTTCCTCTGTTTCTGTGAATTGAGATAACTGTGTAGCTTGCACGAGAGACTGTGAATTGTTCAGATGTCTCTGTGATGTTCGTACGTTATGTTTGTAAAATATACTTGTTTTGATCTTACTAATGAAAGTATGGCTGTGTAATCGTGGATTTCTGTATTGATTTACTTCAGGAAACCAAGATCGTGGACAACTATAGAGAAACTTTTTATATTGATACTCATTCCAAAAATTGATATCTGTTCTATATATTATAAAGGATAGACATCTTATGAATACGGATACTTAATATGATTTATCTTTAGCAATTATGCCCAAACTGATTTGCCACTTGCTGTAATCCACACAGCATTCATGATCATTTTGAAGGTATCTACCCAAGCTTTGGAGAAATTGGATATGAAGGGAGTTTTCATTGCTTCTAGACTTTTAGTGGCTTCTCATCTGTAGTATTTTCCAGGCAATTCAAATATGTGTAGGCGCAGACCACCCATCTAGAATCAATTGTTTGTATTCTTTGTATGATCCTTGCTTTTGTTCTTTCATTTATCTTAATGGAATTTCTTTGTATGAACCATGGTCCATTTGCTTAGATCGTTTCATTTTTCAGTCCTGAAGATGGAAGAGAACATGAGAACACCGTTTCTTCCTCGAGCTTCAATTGTTAATTCCTCCTCAAATCTGTAAATTTGTTTCCATAATTTATTGAAAGCTTCAGCATTCACATGCTTGTGTCCTAGAACTTTCTCCATTCTCTTTTGAGTTTGCTACAATTTCTTCAATCTTCATAAACTATTACAGCTTCTTTTCTTCCATGAGCCTGAACTCTCGAAATCTATCTGCAATTGTATTGAAGACATACTTTGATTGCTATTTCTCATTGTACTTGACCACCAAAACTGACCACGCAGCACCGTAAAGCGCTTAGAAGCTTTCTTAAACTCTCATAAGAAGATAACCTAGTGTCCAAGAAGGCACATGCAGCTTTTACAAATCTAGGACGTATAAGGTTCTTTAAGTTCAAAATAATCTGTTGGGGATGTCATTTATGGGTGATCTACACCTAGAGAGACCAAGAATATTCATGTAGCTTAAGCTAAACCTTGATTGTTGTCAAAGGTTAGTGTGTTCTTGTTCTGTTAGATTGCCACATCAACTTGTTCTGTGATGGAATTTCTGGATTTTTAAGGAACTTACCCAATATTTATCCCCCTTTCATTGTTAACCTTTGATCTCTAGTTTCTTTCCGGTTCTGGAAGATTCTCACATGTCACATGGTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAGCATCCTTTATAAGGGTGTGGACCTCCCTAGCAGACGCGTTTTAAAAACCTTGATGGGAAGCCCGAAAGAAAAAGCTCAAAGAGGACAATATCTGCTAGCGGTAGGCTTGGGCCGTTACACATAGATTAATAGAACTGTTTCCTATTATTGTGAGAAGGAATAGAATCATTTGTCTATACCAATGCCCTTGAAACTTCTGCTATTGAGTTCTTATCAGTCTACTTATTACAACTCCTTATTCCATATGGAAATCCTCTTTCTTGAATATTTTGCTATAGGACTTTCGTTTTACACCTCGGACAAAGGACTGGCGGAAGCCTTTTCTCAATATGGTCAGGTTGTTGAAGGTGAATTCCATTCAAATACTTTAGCTTTCATGTCTAACCATGGCAACTTCGTTTCATGGAGCATAACATTTTCTCAATTCCAGCTAAAGTTGTGATGGACAGAGTATCTGATAAGTCAAAGGGATTCGGATTCGTTACCTTTGCGTCTGATGACGAAGCTCATACAGCTCTGACCGAGATGAACGGAAAGGTCTGCACTTTTCTCTATTTCATTACTTTTAATCTTAGAAATCTAAGTCTTATGGTTATTCGTTGCAGTCTTTGAACGGAAGGGTTATTTTCGTGGACTATGCAAAACCGACGACCAATTTTCGTGGTGGAATTCCGATAGCGAGAGGACCTCCTGAGGAGAAAACTGATGAATGA

mRNA sequence

ATTTTTCCATATATCTTTACTCGTAGATACAAGGGCATAGTTTCACTCTGCTACTACTACTATTATGGCGGCAATCAGAAAAGCGATGGCGATGTCCTCCGATCGTCGCGTTCTTACCTCTTTATTTCATCCGCCGTCTCGTCTCATCTCTTTCAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGACTTTCGTTTTACACCTCGGACAAAGGACTGGCGGAAGCCTTTTCTCAATATGGTCAGGTTGTTGAAGCTAAAGTTGTGATGGACAGAGTATCTGATAAGTCAAAGGGATTCGGATTCGTTACCTTTGCGTCTGATGACGAAGCTCATACAGCTCTGACCGAGATGAACGGAAAGTCTTTGAACGGAAGGGTTATTTTCGTGGACTATGCAAAACCGACGACCAATTTTCGTGGTGGAATTCCGATAGCGAGAGGACCTCCTGAGGAGAAAACTGATGAATGA

Coding sequence (CDS)

ATGGCGGCAATCAGAAAAGCGATGGCGATGTCCTCCGATCGTCGCGTTCTTACCTCTTTATTTCATCCGCCGTCTCGTCTCATCTCTTTCAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGACTTTCGTTTTACACCTCGGACAAAGGACTGGCGGAAGCCTTTTCTCAATATGGTCAGGTTGTTGAAGCTAAAGTTGTGATGGACAGAGTATCTGATAAGTCAAAGGGATTCGGATTCGTTACCTTTGCGTCTGATGACGAAGCTCATACAGCTCTGACCGAGATGAACGGAAAGTCTTTGAACGGAAGGGTTATTTTCGTGGACTATGCAAAACCGACGACCAATTTTCGTGGTGGAATTCCGATAGCGAGAGGACCTCCTGAGGAGAAAACTGATGAATGA

Protein sequence

MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGGIPIARGPPEEKTDE
Homology
[Close]
BLAST of Carg25887 vs. NCBI nr
Match: XP_022933740.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 260.0 bits (663), Expect = 4.4e-66
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0 

Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGL+EAFSQYGQ
Sbjct: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           VVEAKVV DRVSDKSKGFGFVTFAS+DEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG
Sbjct: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTDE
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]
BLAST of Carg25887 vs. NCBI nr
Match: XP_023538908.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.5 bits (659), Expect = 1.3e-65
Identity = 130/134 (97.01%), Postives = 133/134 (99.25%), Query Frame = 0 

Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           MAAIRKAMA+SSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGL+EAFSQYGQ
Sbjct: 1   MAAIRKAMAISSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           VVEAKVV DRVSDKSKGFGFVTFAS+DEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG
Sbjct: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTDE
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]
BLAST of Carg25887 vs. NCBI nr
Match: XP_023005174.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 246.9 bits (629), Expect = 3.9e-62
Identity = 125/134 (93.28%), Postives = 131/134 (97.76%), Query Frame = 0 

Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           MAAIRKAMA+SS+R VL S+F PPSRLISFRGIASKLFVGGLSFYTSDKGL+EAFSQYGQ
Sbjct: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           VVEAKVVMDRVSDKSKGFGFVTFAS+DEAHTALTEMNGKSLNGRVIFVDYAKPT+NFRGG
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTDE
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]
BLAST of Carg25887 vs. NCBI nr
Match: XP_008442872.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 226.5 bits (576), Expect = 5.4e-56
Identity = 113/134 (84.33%), Postives = 126/134 (94.03%), Query Frame = 0 

Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           M AIRKA+A+SS+RRVL SLF PPSRL+SFRGIA+KLFVGGLS+YT+DKGL+EAFSQYGQ
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           V+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGK LNGRVIFV+YAKPTT+ RG 
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]
BLAST of Carg25887 vs. NCBI nr
Match: XP_004149190.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial isoform X1 [Cucumis sativus] >KGN59159.1 hypothetical protein Csa_3G777670 [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 1.2e-55
Identity = 112/134 (83.58%), Postives = 126/134 (94.03%), Query Frame = 0 

Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           M AIRKAMA++S+RRVL SLF PPSRL+S+RGIA+KLFVGGLS+YT+DKGL+EAFSQYGQ
Sbjct: 1   MEAIRKAMAITSNRRVLPSLFPPPSRLVSYRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           V+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGK LNGRVIFV+YAKPTT+ RG 
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSSRGA 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]
BLAST of Carg25887 vs. TAIR10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 142.9 bits (359), Expect = 1.4e-34
Identity = 71/101 (70.30%), Postives = 84/101 (83.17%), Query Frame = 0 

Query: 31  RGIASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASDDEAH 90
           RG+ASKLF+GGLSF T+++GL+EAFS+ GQVVEA++VMDRVSD+SKGFGFVTFAS DEA 
Sbjct: 30  RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89

Query: 91  TALTEMNGKSLNGRVIFVDYAKPTTNF--RGGIPIARGPPE 130
            AL E NG+ LNGR IFVDYAK   +    GG PIARGPP+
Sbjct: 90  KALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130

[Close]
BLAST of Carg25887 vs. TAIR10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-19
Identity = 46/87 (52.87%), Postives = 64/87 (73.56%), Query Frame = 0 

Query: 25  SRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFA 84
           S L S R ++SKLFVGGLS+ T D  L +AF+ +G+V EA V+ DR + +S+GFGFV+F+
Sbjct: 25  SMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84

Query: 85  SDDEAHTALTEMNGKSLNGRVIFVDYA 112
            +D A+ A+ EM+GK LNGR I V+ A
Sbjct: 85  CEDSANNAIKEMDGKELNGRQIRVNLA 111

[Close]
BLAST of Carg25887 vs. TAIR10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 92.0 bits (227), Expect = 2.9e-19
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 0 

Query: 36  KLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTE 95
           KLF+ GLSFYTS+K L  AF  +G++VE K++MD++S +SKG+ F+ + +++ A TAL E
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 96  MNGKSLNGRVIFVDYAKPTTNFR 119
           MNGK +NG +I VD AK T  FR
Sbjct: 343 MNGKIINGWMIVVDVAK-TKPFR 364

[Close]
BLAST of Carg25887 vs. TAIR10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-18
Identity = 41/89 (46.07%), Postives = 63/89 (70.79%), Query Frame = 0 

Query: 33  IASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASDDEAHTA 92
           I+++LFV  LS YT+D+ L + FS +GQ+ EA+++ D  + + KGFGF+TF S+D+A  A
Sbjct: 5   ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64

Query: 93  LTEMNGKSLNGRVIFVDYAKPTTNFRGGI 122
           L  ++GK ++GR+IFV+ AK     R GI
Sbjct: 65  LKSLDGKIVDGRLIFVEVAKNAEEVRAGI 93

[Close]
BLAST of Carg25887 vs. TAIR10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5)

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-18
Identity = 43/87 (49.43%), Postives = 66/87 (75.86%), Query Frame = 0 

Query: 34  ASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASDDEAHTAL 93
           +SK+FVGG+S+ T + GL EAFS+YG+VV+AK+++DR + +S+GF FVTF S +EA  A+
Sbjct: 33  SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92

Query: 94  TEMNGKSLNGRVIFVDYAKPTTNFRGG 121
            +++G+ L+GR I V+YA    +  GG
Sbjct: 93  -QLDGQDLHGRRIRVNYATERGSGFGG 118

[Close]
BLAST of Carg25887 vs. Swiss-Prot
Match: sp|Q9FFZ6|RBP11_ARATH (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.6e-33
Identity = 71/101 (70.30%), Postives = 84/101 (83.17%), Query Frame = 0 

Query: 31  RGIASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASDDEAH 90
           RG+ASKLF+GGLSF T+++GL+EAFS+ GQVVEA++VMDRVSD+SKGFGFVTFAS DEA 
Sbjct: 30  RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89

Query: 91  TALTEMNGKSLNGRVIFVDYAKPTTNF--RGGIPIARGPPE 130
            AL E NG+ LNGR IFVDYAK   +    GG PIARGPP+
Sbjct: 90  KALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130

[Close]
BLAST of Carg25887 vs. Swiss-Prot
Match: sp|Q28IQ9|CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-18
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 0 

Query: 36  KLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTE 95
           KLFVGGL+F T+++ L + FS+YGQV E  VV DR S +S+GFGFVTF + ++A  A+  
Sbjct: 7   KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query: 96  MNGKSLNGRVIFVDYAKPTTNFRGG 121
           MNGKS++GR I VD A  ++N R G
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSNDRRG 91

[Close]
BLAST of Carg25887 vs. Swiss-Prot
Match: sp|Q9LIS2|RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-18
Identity = 46/87 (52.87%), Postives = 64/87 (73.56%), Query Frame = 0 

Query: 25  SRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFA 84
           S L S R ++SKLFVGGLS+ T D  L +AF+ +G+V EA V+ DR + +S+GFGFV+F+
Sbjct: 25  SMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84

Query: 85  SDDEAHTALTEMNGKSLNGRVIFVDYA 112
            +D A+ A+ EM+GK LNGR I V+ A
Sbjct: 85  CEDSANNAIKEMDGKELNGRQIRVNLA 111

[Close]
BLAST of Carg25887 vs. Swiss-Prot
Match: sp|P60826|CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.2e-18
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 0 

Query: 36  KLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTE 95
           KLFVGGLSF T+++ L + FS+YGQ+ E  VV DR + +S+GFGFVTF + D+A  A+  
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 96  MNGKSLNGRVIFVDYAKPTTN-----FRGGIPIARG 127
           MNGKS++GR I VD A  +++     +RGG    RG
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRG 102

[Close]
BLAST of Carg25887 vs. Swiss-Prot
Match: sp|Q14011|CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.2e-18
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 0 

Query: 36  KLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTE 95
           KLFVGGLSF T+++ L + FS+YGQ+ E  VV DR + +S+GFGFVTF + D+A  A+  
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 96  MNGKSLNGRVIFVDYAKPTTN-----FRGGIPIARG 127
           MNGKS++GR I VD A  +++     +RGG    RG
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRG 102

[Close]
BLAST of Carg25887 vs. TrEMBL
Match: tr|A0A1S3B7I3|A0A1S3B7I3_CUCME (glycine-rich RNA-binding protein 4, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486638 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.6e-56
Identity = 113/134 (84.33%), Postives = 126/134 (94.03%), Query Frame = 0 

Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           M AIRKA+A+SS+RRVL SLF PPSRL+SFRGIA+KLFVGGLS+YT+DKGL+EAFSQYGQ
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           V+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGK LNGRVIFV+YAKPTT+ RG 
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]
BLAST of Carg25887 vs. TrEMBL
Match: tr|A0A0A0LE31|A0A0A0LE31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 8.0e-56
Identity = 112/134 (83.58%), Postives = 126/134 (94.03%), Query Frame = 0 

Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           M AIRKAMA++S+RRVL SLF PPSRL+S+RGIA+KLFVGGLS+YT+DKGL+EAFSQYGQ
Sbjct: 1   MEAIRKAMAITSNRRVLPSLFPPPSRLVSYRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           V+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGK LNGRVIFV+YAKPTT+ RG 
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSSRGA 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]
BLAST of Carg25887 vs. TrEMBL
Match: tr|A0A1S4DUE5|A0A1S4DUE5_CUCME (glycine-rich RNA-binding protein 4, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486638 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.6e-54
Identity = 112/134 (83.58%), Postives = 125/134 (93.28%), Query Frame = 0 

Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           M AIRKA+A+SS+RRVL SLF PPSRL+SFRGIA+KLFVGGLS+YT+DKGL+EAFSQYGQ
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           V+E  VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGK LNGRVIFV+YAKPTT+ RG 
Sbjct: 61  VIE--VVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDK 132

[Close]
BLAST of Carg25887 vs. TrEMBL
Match: tr|A0A2P4IPK3|A0A2P4IPK3_QUESU (Glycine-rich rna-binding protein 4, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_35609 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 6.4e-45
Identity = 98/133 (73.68%), Postives = 114/133 (85.71%), Query Frame = 0 

Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           MAA+R+ +  + +    TSL  PP+ LI  RGIASKLFVGGLSFYT+DKGL+EAFSQYGQ
Sbjct: 1   MAALRRLVGHNPNLS-YTSLL-PPTLLICSRGIASKLFVGGLSFYTNDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           VVEAKVVMDRVSD+SKGFGFVTFAS+DEA  ALT+MNGK+LNGRV+FVDYAKP ++F GG
Sbjct: 61  VVEAKVVMDRVSDRSKGFGFVTFASEDEAQKALTDMNGKALNGRVVFVDYAKPKSDFGGG 120

Query: 121 IPIARGPPEEKTD 134
           +PIARGPPE K D
Sbjct: 121 MPIARGPPEPKDD 131

[Close]
BLAST of Carg25887 vs. TrEMBL
Match: tr|A0A1R3HDK4|A0A1R3HDK4_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_29667 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.0e-43
Identity = 93/125 (74.40%), Postives = 107/125 (85.60%), Query Frame = 0 

Query: 10  MSSDRRVLT-----SLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQVVEA 69
           M++ RR++T     S   PPS LI  RGIASKLFVGGLSFYT++KGL +AFSQYGQV+EA
Sbjct: 1   MAALRRLITGNPKPSSLIPPSLLICRRGIASKLFVGGLSFYTNEKGLVDAFSQYGQVMEA 60

Query: 70  KVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGGIPIA 129
           K+V DRV+DKSKGFGFVTFAS+DEA TA+TEMNGK+LNGRVIFVDYAKPT N  GG+PIA
Sbjct: 61  KIVTDRVTDKSKGFGFVTFASEDEAETAMTEMNGKALNGRVIFVDYAKPTQNLGGGMPIA 120

The following BLAST results are available for this feature:
BLAST of Carg25887 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022933740.14.4e-6697.76small RNA-binding protein 11, chloroplastic-like [Cucurbita moschata][more]
XP_023538908.11.3e-6597.01small RNA-binding protein 11, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_023005174.13.9e-6293.28small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima][more]
XP_008442872.15.4e-5684.33PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial isoform X1 [Cucumis... [more]
XP_004149190.11.2e-5583.58PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial isoform X1 [Cucumis... [more]
BLAST of Carg25887 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G06210.11.4e-3470.30RNA binding (RRM/RBD/RNP motifs) family protein[more]
AT3G23830.11.3e-1952.87glycine-rich RNA-binding protein 4[more]
AT3G20930.12.9e-1953.01RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G46020.11.4e-1846.07RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G74230.12.5e-1849.43glycine-rich RNA-binding protein 5[more]
BLAST of Carg25887 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FFZ6|RBP11_ARATH2.6e-3370.30Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S... [more]
sp|Q28IQ9|CIRBP_XENTR2.4e-1854.12Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 S... [more]
sp|Q9LIS2|RBG4_ARATH2.4e-1852.87Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
sp|P60826|CIRBP_CRIGR5.2e-1850.00Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 ... [more]
sp|Q14011|CIRBP_HUMAN5.2e-1850.00Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1[more]
BLAST of Carg25887 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B7I3|A0A1S3B7I3_CUCME3.6e-5684.33glycine-rich RNA-binding protein 4, mitochondrial isoform X1 OS=Cucumis melo OX=... [more]
tr|A0A0A0LE31|A0A0A0LE31_CUCSA8.0e-5683.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV=1[more]
tr|A0A1S4DUE5|A0A1S4DUE5_CUCME2.6e-5483.58glycine-rich RNA-binding protein 4, mitochondrial isoform X2 OS=Cucumis melo OX=... [more]
tr|A0A2P4IPK3|A0A2P4IPK3_QUESU6.4e-4573.68Glycine-rich rna-binding protein 4, mitochondrial OS=Quercus suber OX=58331 GN=C... [more]
tr|A0A1R3HDK4|A0A1R3HDK4_9ROSI2.0e-4374.40Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_29667 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25887-RACarg25887-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 36..109
e-value: 1.2E-26
score: 104.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 37..106
e-value: 5.4E-21
score: 74.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 35..113
score: 20.662
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 22..121
e-value: 2.1E-28
score: 100.9
NoneNo IPR availablePANTHERPTHR45502:SF1SUBFAMILY NOT NAMEDcoord: 1..133
NoneNo IPR availablePANTHERPTHR45502FAMILY NOT NAMEDcoord: 1..133
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 36..121

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg25887Cla017668Watermelon (97103) v1carwmB0608
Carg25887Csa3G777670Cucumber (Chinese Long) v2carcuB0637
Carg25887MELO3C009496Melon (DHL92) v3.5.1carmeB0613
Carg25887ClCG10G018700Watermelon (Charleston Gray)carwcgB0593
Carg25887CSPI03G35170Wild cucumber (PI 183967)carcpiB0643
Carg25887Cucsa.241400Cucumber (Gy14) v1carcgyB0686
Carg25887CmaCh14G003300Cucurbita maxima (Rimu)carcmaB0856
Carg25887CmaCh06G004940Cucurbita maxima (Rimu)carcmaB0858
Carg25887CmoCh06G004960Cucurbita moschata (Rifu)carcmoB0835
Carg25887Lsi03G018680Bottle gourd (USVL1VR-Ls)carlsiB557
Carg25887CsGy3G032670Cucumber (Gy14) v2carcgybB0609
Carg25887MELO3C009496.2Melon (DHL92) v3.6.1carmedB0619
Carg25887CsaV3_3G037530Cucumber (Chinese Long) v3carcucB0644
Carg25887Cla97C10G201740Watermelon (97103) v2carwmbB0636
Carg25887Bhi11G001949Wax gourdcarwgoB0725
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg25887Carg03655Silver-seed gourdcarcarB290
The following block(s) are covering this gene:
GeneOrganismBlock
Carg25887Wax gourdcarwgoB0727
Carg25887Cucumber (Gy14) v1carcgyB0685
Carg25887Silver-seed gourdcarcarB277
Carg25887Cucumber (Gy14) v2carcgybB0610
Carg25887Cucurbita maxima (Rimu)carcmaB0857
Carg25887Cucurbita moschata (Rifu)carcmoB0833
Carg25887Cucurbita moschata (Rifu)carcmoB0834
Carg25887Cucurbita moschata (Rifu)carcmoB0836
Carg25887Cucurbita pepo (Zucchini)carcpeB0866
Carg25887Cucurbita pepo (Zucchini)carcpeB0867
Carg25887Cucurbita pepo (Zucchini)carcpeB0868
Carg25887Cucurbita pepo (Zucchini)carcpeB0869
Carg25887Wild cucumber (PI 183967)carcpiB0644
Carg25887Cucumber (Chinese Long) v3carcucB0645
Carg25887Bottle gourd (USVL1VR-Ls)carlsiB556
Carg25887Melon (DHL92) v3.6.1carmedB0620
Carg25887Watermelon (Charleston Gray)carwcgB0594
Carg25887Watermelon (97103) v1carwmB0609