Carg03655 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03655
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Glycine-rich RNA-binding protein
Location	Cucurbita_argyrosperma_scaffold_006 : 1225898 .. 1228861 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCGACCATAAAAGCGACGGCAATATCCTTCAATCGTCGTGTTCTTCCCCCTATATTTCCTCCGCCGTCTCGTCTCGTCTCTTTTAGAGGCATAGCTTCGAAGCTTTTTGTTGGTGGTAAGCCAAACGTTCCTCCTCTCTATTCTTCTGTTCATTTTCCGATTCATCGTGTCCATCTATCGTTGCAGTCTGCGTTTCAGAACTGAAATCACACTTTTGCCGCGAATTTTATTTTTATGCTCATTAAACGTTCCTCTGTTTCTGTGAATTGTGCTAACTTTGTATGATTGAACTAAGCTCTCTGTGATGTTCATACGTTTAGTTTTATGAAATGTAAACTTTGTTTTAATGTTACAAGTGAAAATTTGACTGTCTGAATGTGAGCTCGTGTTAATTTACTTCTGAAAACCGCGATCCTGGAAAACTTTGGCCTCTGGGGAGAACTTGTTGTATTGATATTAATTTTAAAATTTGATATCTGTTCTATATATTGTAAAGGATAAACATCGAATGATTTGCATACTTTCTCTTAATGTTGATGTTAAAGATCAAAATGCTGGTTAGATATGAAACGAATATACAGAATTTGTAAAATGTTTCATCCTTGATCTTAGCCTACATTTACTTATGGAGAGACAAAAAAATAGCAGAACTTATACATCAGATTTCATTAGTTGAATTAGGAGTCATGATGTCCGCAAGCACCGAGCCAACTTTTGGGAGGTCTTCCTCTTCACCATTCAATATGTTTCTTTTTGGTACTATCCATTGCCCAAAATGGTTAAGTTCCTAAGCCCCAGGTCTATAACATAATGTAATATGAACCTCCCAGGTAGCTTCATCATCCACTAAGAGTGCAGTGTGGCATGTCTTTAATGCTTTTACTTGAATATTTACTTCCAAACCATCTTTATCACTTTCTGTTGGATTTATCTTTAGCAATTATACCAAACAGATTAGTCACTTGCTGTAATCCATGCAGCATCCACGATCATTTTAAAGCTATTGACCCTAACCTCGGAGAAATTGAATATGGAGAGTTTTCGTTGTGTCTAATGCCTTCTCATGGAATACTTTCCAGGTTGTTCAAAATGTATTTCCTGTCAAAATAAAACATTCTTTTGTCACAAAAATTTCCCCACTAATGATACCTCTCTTGTGTTTGCTACAACTTCCTCAGACACTATCATAGCTTGTTTCCATCTTCCATGAGCTTGAACTCCCTAAATCTTTTTGCTATTGTATTGGAAGACCTATTTTGGTTGCCATTGCTCGTTGTAGTACTTGATCACCAAATTCGGCCATAAATCACCTGAAATAGCTAAAAATGTAGAAGCTCTCTTGATAGCTAAAAATGTAGAAGCTCTCTTGAACTCTCGTAAAAAGAAAGCCTATAGAGACCAAGAGTGCATATGCAGCTTTAGCTTTACAAATCTAGGATGTCCAAGGTTCTTAAGCTTAACCATGATTGTGGTTAAACGTTAGCGTGTTCTTGTTCTGGCAAACTGCCACATCAACTTGTTCTGTGATGGGATTAGTGGATTTTGTAGACATGACCCAATATTAATCCCTCTTTCATTGTTAACCTTTGATCTCAAGTTTCTTTCATTTCTAGAAGATTCTTACATACATCACAAATAAAAAATAAGAAAATCCAAGGGGAGGGTCAACGAACAAGCTTAACTTTCGCTGAAAAGTCAGAACCTCTCCGACTCTGCTTTAGTCATTGATCAGCTGGTGAAGCTAGCCAACCAATGACCCGACTCACTCAGAGAATGGACGAGAAGTATAAAATCCCTGTAAATTGTTTTATTTTTTTGGCAGAAATCGAACCAGCGCTAGCGGATCAAGTCACAAGCACCACATTGATTAATAGATTTGTTTACTGTTCTTGTGAAAAGGAATATAATCATTTGTATATGATAATGCTCTTGAGATTTTTGCTTTTGAATATTTTATCAGTCTATGCATATTATAATTCCATATTCCATATTGAAATCCTTGTTCTGGAGTATTTTGCTACAGTACTCCCATTCTACACCGCGGGCAAAGGACTATCGGAAGCCTTTTCTCGAGACGGTCAGGTTGTGGAAGAAGGCTTCCATCCAGATACTTTAGCTTTCATGTCTTACAATGGCAATTTAGTTTCAAAAAACAATTCTCTCTACTCCAGCCAAAGTTTTGATGGACAGAGCCTCTGTTAAGTCAAAGGGATTTGGATTTGTCACCTTTGCATCTGAAGACGAAGCGCATATTGTACTGACAAAGATGAACGGAAGGTCTGCACTTTCCTCCATCATTACTTTTACATCTTAGAAATGCTAAGTCTAATGTTATTTGTTGCAGCCTTTGAACGGAAGGCTTATTTCTGGGGACTATGTGAAACTGCCTTCCAATTGGCAGAAATCTTATAGCGAGAGGACCTCCTAAAGGAGAAAACTGATAAGTGATTGTTCCGTCATTTATCAGAAAGGAATTAGCTGAACAGGGAGGGAACCCACGTAGTAGCTGTGCATGGAAAGTGTGATTCAGACATGTTCTCTCAGCAATTTGCTTCATGCTAGAGATGTGCTAAAAAGCTTCAGGAAAAAGAGGTCAGCTTGTAGGAATTTTTAAACTTTGTAGAAATTAGATTAACCGACTTTTTTTCTTTAGAAGTTTTAAATTTTTCTTCCCATTTGCTAAGTATCTTATTAACTATAGTTAAACTGACATACAGACATTTATGCATTTTCTTAGTTTGCAGATTGCCATATTGTGGTAGTAATCTTTCTTTTTGCATCCATTAGTCTCTAAGGTTTAAAATAAGTTTTAAGTCTCATTAATGTGACTTCACATGAGGGACGGATGAAAAATTTTTCTTTGTTTACACTCTTTGAAGGGAAAAGAGAGTCATTAGGAAGGCGAGCGAATGGCATCACATGCACGCAATTGTCGCAAGAGAGAGCCTTGGGTGTTAG

mRNA sequence

ATGTCGGCGACCATAAAAGCGACGGCAATATCCTTCAATCGTCGTGTTCTTCCCCCTATATTTCCTCCGCCGTCTCGTCTCGTCTCTTTTAGAGGCATAGCTTCGAAGCTTTTTGTTGGTGTCTATGCATATTATAATTCCATATTCCATATTGAAATCCTTGTTCTGGAGTATTTTGCTACAGTACTCCCATTCTACACCGCGGGCAAAGGACTATCGGAAGCCTTTTCTCGAGACGCCAAAGTTTTGATGGACAGAGCCTCTGTTAAGTCAAAGGGATTTGGATTTGTCACCTTTGCATCTGAAGACGAAGCGCATATTGTACTGACAAAGATGAACGGAAGGGAAAAGAGAGTCATTAGGAAGGCGAGCGAATGGCATCACATGCACGCAATTGTCGCAAGAGAGAGCCTTGGGTGTTAG

Coding sequence (CDS)

ATGTCGGCGACCATAAAAGCGACGGCAATATCCTTCAATCGTCGTGTTCTTCCCCCTATATTTCCTCCGCCGTCTCGTCTCGTCTCTTTTAGAGGCATAGCTTCGAAGCTTTTTGTTGGTGTCTATGCATATTATAATTCCATATTCCATATTGAAATCCTTGTTCTGGAGTATTTTGCTACAGTACTCCCATTCTACACCGCGGGCAAAGGACTATCGGAAGCCTTTTCTCGAGACGCCAAAGTTTTGATGGACAGAGCCTCTGTTAAGTCAAAGGGATTTGGATTTGTCACCTTTGCATCTGAAGACGAAGCGCATATTGTACTGACAAAGATGAACGGAAGGGAAAAGAGAGTCATTAGGAAGGCGAGCGAATGGCATCACATGCACGCAATTGTCGCAAGAGAGAGCCTTGGGTGTTAG

Protein sequence

MSATIKATAISFNRRVLPPIFPPPSRLVSFRGIASKLFVGVYAYYNSIFHIEILVLEYFATVLPFYTAGKGLSEAFSRDAKVLMDRASVKSKGFGFVTFASEDEAHIVLTKMNGREKRVIRKASEWHHMHAIVARESLGC

Homology

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BLAST of Carg03655 vs. NCBI nr
Match: XP_023005174.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 121.3 bits (303), Expect = 2.6e-24
Identity = 71/120 (59.17%), Postives = 80/120 (66.67%), Query Frame = 0


Query: 1   MSATIKATAISFNRRVLPPIFPPPSRLVSFRGIASKLFVGVYAYYNSIFHIEILVLEYFA 60
           M+A  KA AIS NR VLP +F PPSRL+SFRGIASKLFVG                    
Sbjct: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVG-------------------- 60

Query: 61  TVLPFYTAGKGLSEAFSR-----DAKVLMDRASVKSKGFGFVTFASEDEAHIVLTKMNGR 116
             L FYT+ KGLSEAFS+     +AKV+MDR S KSKGFGFVTFASEDEAH  LT+MNG+
Sbjct: 61  -GLSFYTSDKGLSEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGK 99

[Close]

BLAST of Carg03655 vs. NCBI nr
Match: XP_008442872.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 4.9e-23
Identity = 69/120 (57.50%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 1   MSATIKATAISFNRRVLPPIFPPPSRLVSFRGIASKLFVGVYAYYNSIFHIEILVLEYFA 60
           M A  KA AIS NRRVLP +FPPPSRLVSFRGIA+KLFVG  +Y                
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSY---------------- 60

Query: 61  TVLPFYTAGKGLSEAFSR-----DAKVLMDRASVKSKGFGFVTFASEDEAHIVLTKMNGR 116
                YT  KGLSEAFS+     +A V+MDR S KSKGFGFVTFAS DEAH  L++MNG+
Sbjct: 61  -----YTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGK 99

[Close]

BLAST of Carg03655 vs. NCBI nr
Match: XP_023538908.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.3 bits (290), Expect = 8.3e-23
Identity = 69/120 (57.50%), Postives = 79/120 (65.83%), Query Frame = 0


Query: 1   MSATIKATAISFNRRVLPPIFPPPSRLVSFRGIASKLFVGVYAYYNSIFHIEILVLEYFA 60
           M+A  KA AIS +RRVL  +F PPSRL+SFRGIASKLFVG                    
Sbjct: 1   MAAIRKAMAISSDRRVLTSLFHPPSRLISFRGIASKLFVG-------------------- 60

Query: 61  TVLPFYTAGKGLSEAFSR-----DAKVLMDRASVKSKGFGFVTFASEDEAHIVLTKMNGR 116
             L FYT+ KGLSEAFS+     +AKV+ DR S KSKGFGFVTFASEDEAH  LT+MNG+
Sbjct: 61  -GLSFYTSDKGLSEAFSQYGQVVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGK 99

[Close]

BLAST of Carg03655 vs. NCBI nr
Match: XP_016899606.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 68/118 (57.63%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 1   MSATIKATAISFNRRVLPPIFPPPSRLVSFRGIASKLFVGVYAYYNSIFHIEILVLEYFA 60
           M A  KA AIS NRRVLP +FPPPSRLVSFRGIA+KLFVG  +Y                
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSY---------------- 60

Query: 61  TVLPFYTAGKGLSEAFSRDAKVL---MDRASVKSKGFGFVTFASEDEAHIVLTKMNGR 116
                YT  KGLSEAFS+  +V+   MDR S KSKGFGFVTFAS DEAH  L++MNG+
Sbjct: 61  -----YTTDKGLSEAFSQYGQVIEVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGK 97

[Close]

BLAST of Carg03655 vs. NCBI nr
Match: XP_022933740.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 115.2 bits (287), Expect = 1.8e-22
Identity = 68/120 (56.67%), Postives = 79/120 (65.83%), Query Frame = 0


Query: 1   MSATIKATAISFNRRVLPPIFPPPSRLVSFRGIASKLFVGVYAYYNSIFHIEILVLEYFA 60
           M+A  KA A+S +RRVL  +F PPSRL+SFRGIASKLFVG                    
Sbjct: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVG-------------------- 60

Query: 61  TVLPFYTAGKGLSEAFSR-----DAKVLMDRASVKSKGFGFVTFASEDEAHIVLTKMNGR 116
             L FYT+ KGLSEAFS+     +AKV+ DR S KSKGFGFVTFASEDEAH  LT+MNG+
Sbjct: 61  -GLSFYTSDKGLSEAFSQYGQVVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGK 99

[Close]

BLAST of Carg03655 vs. TAIR10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-11
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 31  RGIASKLFVGVYAYYNSIFHIEILVLEYFATVLPFYTAGKGLSEAFSR-----DAKVLMD 90
           RG+ASKLF+G                      L F T  +GLSEAFS+     +A+++MD
Sbjct: 30  RGVASKLFIG---------------------GLSFCTTEQGLSEAFSKCGQVVEAQIVMD 89

Query: 91  RASVKSKGFGFVTFASEDEAHIVLTKMNGRE 117
           R S +SKGFGFVTFAS DEA   L + NG++
Sbjct: 90  RVSDRSKGFGFVTFASADEAQKALMEFNGQQ 99

[Close]

BLAST of Carg03655 vs. TAIR10
Match: AT5G59860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 48.1 bits (113), Expect = 5.0e-06
Identity = 21/53 (39.62%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 63  LPFYTAGKGLSEAFSRDAKVLMDRASVKSKGFGFVTFASEDEAHIVLTKMNGR 116
           L  YT  + L + F+  A+++ D+ + + KGFGF+TF SED+A   L  +NG+
Sbjct: 78  LSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 130

[Close]

BLAST of Carg03655 vs. TAIR10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 47.4 bits (111), Expect = 8.6e-06
Identity = 24/62 (38.71%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 59  FATVLPFYTAGKGLSEAFSR-----DAKVLMDRASVKSKGFGFVTFASEDEAHIVLTKMN 116
           F T L FYT+ K L  AF       + K++MD+ S +SKG+ F+ + +E+ A   L +MN
Sbjct: 285 FITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMN 344

[Close]

BLAST of Carg03655 vs. TAIR10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4)

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 33/100 (33.00%), Postives = 50/100 (50.00%), Query Frame = 0


Query: 22  PPPSRLVSFRGIASKLFVGVYAYYNSIFHIEILVLEYFATVLPFYTAGKGLSEAFS---- 81
           P  S L S R ++SKLFVG                      L + T    L +AF+    
Sbjct: 22  PVTSMLGSLRYMSSKLFVG---------------------GLSWGTDDSSLKQAFTSFGE 81

Query: 82  -RDAKVLMDRASVKSKGFGFVTFASEDEAHIVLTKMNGRE 117
             +A V+ DR + +S+GFGFV+F+ ED A+  + +M+G+E
Sbjct: 82  VTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKE 100

[Close]

BLAST of Carg03655 vs. TAIR10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 45.4 bits (106), Expect = 3.3e-05
Identity = 22/64 (34.38%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 57  EYFATVLPFYTAGKGLSEAFS-----RDAKVLMDRASVKSKGFGFVTFASEDEAHIVLTK 116
           + F + L  YT  + L + FS     ++A+++ D  + + KGFGF+TF SED+A   L  
Sbjct: 8   QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67

[Close]

BLAST of Carg03655 vs. Swiss-Prot
Match: sp|Q9FFZ6|RBP11_ARATH (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-10
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 31  RGIASKLFVGVYAYYNSIFHIEILVLEYFATVLPFYTAGKGLSEAFSR-----DAKVLMD 90
           RG+ASKLF+G                      L F T  +GLSEAFS+     +A+++MD
Sbjct: 30  RGVASKLFIG---------------------GLSFCTTEQGLSEAFSKCGQVVEAQIVMD 89

Query: 91  RASVKSKGFGFVTFASEDEAHIVLTKMNGRE 117
           R S +SKGFGFVTFAS DEA   L + NG++
Sbjct: 90  RVSDRSKGFGFVTFASADEAQKALMEFNGQQ 99

[Close]

BLAST of Carg03655 vs. Swiss-Prot
Match: sp|C0HFE5|ORRM1_MAIZE (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.9e-05
Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 51  IEILVLEYFATVLPFYTAGKGLSEAFSR-----DAKVLMDRASVKSKGFGFVTFASEDEA 110
           ++I     F T L FYT+ K L  AF       + K++MDR S +SKG+ FV + +E+  
Sbjct: 294 VDIKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAG 353

Query: 111 HIVLTKMNGR 116
              L  MNG+
Sbjct: 354 GAALKAMNGQ 363

[Close]

BLAST of Carg03655 vs. Swiss-Prot
Match: sp|Q8L440|ORRM1_ARATH (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.5e-04
Identity = 24/62 (38.71%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 59  FATVLPFYTAGKGLSEAFSR-----DAKVLMDRASVKSKGFGFVTFASEDEAHIVLTKMN 116
           F T L FYT+ K L  AF       + K++MD+ S +SKG+ F+ + +E+ A   L +MN
Sbjct: 285 FITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMN 344

[Close]

BLAST of Carg03655 vs. Swiss-Prot
Match: sp|P10979|GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN=RAB15 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-04
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 59  FATVLPFYTAGKGLSEAFSR-----DAKVLMDRASVKSKGFGFVTFASEDEAHIVLTKMN 117
           F   L + T+ + L  AF+      D+KV+ DR + +S+GFGFVTF+SE+     +  MN
Sbjct: 11  FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70

[Close]

BLAST of Carg03655 vs. Swiss-Prot
Match: sp|Q9LIS2|RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-04
Identity = 33/100 (33.00%), Postives = 50/100 (50.00%), Query Frame = 0


Query: 22  PPPSRLVSFRGIASKLFVGVYAYYNSIFHIEILVLEYFATVLPFYTAGKGLSEAFS---- 81
           P  S L S R ++SKLFVG                      L + T    L +AF+    
Sbjct: 22  PVTSMLGSLRYMSSKLFVG---------------------GLSWGTDDSSLKQAFTSFGE 81

Query: 82  -RDAKVLMDRASVKSKGFGFVTFASEDEAHIVLTKMNGRE 117
             +A V+ DR + +S+GFGFV+F+ ED A+  + +M+G+E
Sbjct: 82  VTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKE 100

[Close]

BLAST of Carg03655 vs. TrEMBL
Match: tr|A0A1S3B7I3|A0A1S3B7I3_CUCME (glycine-rich RNA-binding protein 4, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486638 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.2e-23
Identity = 69/120 (57.50%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 1   MSATIKATAISFNRRVLPPIFPPPSRLVSFRGIASKLFVGVYAYYNSIFHIEILVLEYFA 60
           M A  KA AIS NRRVLP +FPPPSRLVSFRGIA+KLFVG  +Y                
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSY---------------- 60

Query: 61  TVLPFYTAGKGLSEAFSR-----DAKVLMDRASVKSKGFGFVTFASEDEAHIVLTKMNGR 116
                YT  KGLSEAFS+     +A V+MDR S KSKGFGFVTFAS DEAH  L++MNG+
Sbjct: 61  -----YTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGK 99

[Close]

BLAST of Carg03655 vs. TrEMBL
Match: tr|A0A1S4DUE5|A0A1S4DUE5_CUCME (glycine-rich RNA-binding protein 4, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486638 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.4e-23
Identity = 68/118 (57.63%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 1   MSATIKATAISFNRRVLPPIFPPPSRLVSFRGIASKLFVGVYAYYNSIFHIEILVLEYFA 60
           M A  KA AIS NRRVLP +FPPPSRLVSFRGIA+KLFVG  +Y                
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSY---------------- 60

Query: 61  TVLPFYTAGKGLSEAFSRDAKVL---MDRASVKSKGFGFVTFASEDEAHIVLTKMNGR 116
                YT  KGLSEAFS+  +V+   MDR S KSKGFGFVTFAS DEAH  L++MNG+
Sbjct: 61  -----YTTDKGLSEAFSQYGQVIEVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGK 97

[Close]

BLAST of Carg03655 vs. TrEMBL
Match: tr|A0A0A0LE31|A0A0A0LE31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-22
Identity = 67/120 (55.83%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 1   MSATIKATAISFNRRVLPPIFPPPSRLVSFRGIASKLFVGVYAYYNSIFHIEILVLEYFA 60
           M A  KA AI+ NRRVLP +FPPPSRLVS+RGIA+KLFVG  +Y                
Sbjct: 1   MEAIRKAMAITSNRRVLPSLFPPPSRLVSYRGIATKLFVGGLSY---------------- 60

Query: 61  TVLPFYTAGKGLSEAFSR-----DAKVLMDRASVKSKGFGFVTFASEDEAHIVLTKMNGR 116
                YT  KGLSEAFS+     +A V+MDR S KSKGFGFVTFAS DEAH  L++MNG+
Sbjct: 61  -----YTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGK 99

[Close]

BLAST of Carg03655 vs. TrEMBL
Match: tr|A0A2P5EBF9|A0A2P5EBF9_9ROSA (Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_213020 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 54/99 (54.55%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 23  PPSRLVSFRGIASKLFVGVYAYYNSIFHIEILVLEYFATVLPFYTAGKGLSEAFSR---- 82
           PP+ L+S RGI SKLFVG                      L FYT  KGLSEAFS     
Sbjct: 21  PPALLISCRGITSKLFVG---------------------GLSFYTNEKGLSEAFSEHGQV 80

Query: 83  -DAKVLMDRASVKSKGFGFVTFASEDEAHIVLTKMNGRE 117
            DAK++M+R S KSKGFGFVTFASEDEAH  LT+MNG+E
Sbjct: 81  IDAKIVMNRVSAKSKGFGFVTFASEDEAHKALTEMNGKE 98

[Close]

BLAST of Carg03655 vs. TrEMBL
Match: tr|A0A2P5DXM6|A0A2P5DXM6_PARAD (Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_024020 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 54/99 (54.55%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 23  PPSRLVSFRGIASKLFVGVYAYYNSIFHIEILVLEYFATVLPFYTAGKGLSEAFSR---- 82
           PP+ L+S RGI SKLFVG                      L FYT  KGLSEAFS     
Sbjct: 21  PPALLISCRGITSKLFVG---------------------GLSFYTNEKGLSEAFSEHGQV 80

Query: 83  -DAKVLMDRASVKSKGFGFVTFASEDEAHIVLTKMNGRE 117
            D K++MDR S KSKGFGFVTFASEDEAH  LT+MNG+E
Sbjct: 81  IDTKIIMDRVSSKSKGFGFVTFASEDEAHKALTEMNGKE 98

The following BLAST results are available for this feature:

BLAST of Carg03655 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005174.1	2.6e-24	59.17	small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima]	[more]
XP_008442872.1	4.9e-23	57.50	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial isoform X1 [Cucumis...	[more]
XP_023538908.1	8.3e-23	57.50	small RNA-binding protein 11, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_016899606.1	1.4e-22	57.63	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial isoform X2 [Cucumis...	[more]
XP_022933740.1	1.8e-22	56.67	small RNA-binding protein 11, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of Carg03655 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06210.1	1.8e-11	43.96	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59860.1	5.0e-06	39.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	8.6e-06	38.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	1.1e-05	33.00	glycine-rich RNA-binding protein 4	[more]
AT3G46020.1	3.3e-05	34.38	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg03655 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FFZ6\|RBP11_ARATH	3.2e-10	43.96	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
sp\|C0HFE5\|ORRM1_MAIZE	6.9e-05	37.14	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]
sp\|Q8L440\|ORRM1_ARATH	1.5e-04	38.71	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
sp\|P10979\|GRPA_MAIZE	2.0e-04	39.68	Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN...	[more]
sp\|Q9LIS2\|RBG4_ARATH	2.0e-04	33.00	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Carg03655 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B7I3\|A0A1S3B7I3_CUCME	3.2e-23	57.50	glycine-rich RNA-binding protein 4, mitochondrial isoform X1 OS=Cucumis melo OX=...	[more]
tr\|A0A1S4DUE5\|A0A1S4DUE5_CUCME	9.4e-23	57.63	glycine-rich RNA-binding protein 4, mitochondrial isoform X2 OS=Cucumis melo OX=...	[more]
tr\|A0A0A0LE31\|A0A0A0LE31_CUCSA	1.6e-22	55.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV=1	[more]
tr\|A0A2P5EBF9\|A0A2P5EBF9_9ROSA	1.1e-15	54.55	Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_213020 P...	[more]
tr\|A0A2P5DXM6\|A0A2P5DXM6_PARAD	1.1e-15	54.55	Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_0240...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03655-RA	Carg03655-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 53..131 e-value: 1.2E-9 score: 40.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 79..116 e-value: 1.9E-6 score: 27.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 56..125 score: 9.2
None	No IPR available	PANTHER	PTHR45502:SF1	SUBFAMILY NOT NAMED	coord: 58..116
None	No IPR available	PANTHER	PTHR45502	FAMILY NOT NAMED	coord: 58..116
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 63..116

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03655	Cla017668	Watermelon (97103) v1	carwmB0237
Carg03655	Csa3G777670	Cucumber (Chinese Long) v2	carcuB0276
Carg03655	MELO3C009496	Melon (DHL92) v3.5.1	carmeB0251
Carg03655	ClCG10G018700	Watermelon (Charleston Gray)	carwcgB0240
Carg03655	CSPI03G35170	Wild cucumber (PI 183967)	carcpiB0280
Carg03655	Cucsa.241400	Cucumber (Gy14) v1	carcgyB0294
Carg03655	CmaCh06G004940	Cucurbita maxima (Rimu)	carcmaB0350
Carg03655	CmaCh14G003300	Cucurbita maxima (Rimu)	carcmaB0343
Carg03655	CmoCh14G003210	Cucurbita moschata (Rifu)	carcmoB0347
Carg03655	CmoCh06G004960	Cucurbita moschata (Rifu)	carcmoB0351
Carg03655	Lsi03G018680	Bottle gourd (USVL1VR-Ls)	carlsiB225
Carg03655	Cp4.1LG03g00820	Cucurbita pepo (Zucchini)	carcpeB0353
Carg03655	CsGy3G032670	Cucumber (Gy14) v2	carcgybB0263
Carg03655	MELO3C009496.2	Melon (DHL92) v3.6.1	carmedB0261
Carg03655	CsaV3_3G037530	Cucumber (Chinese Long) v3	carcucB0279
Carg03655	Cla97C10G201740	Watermelon (97103) v2	carwmbB0254
Carg03655	Bhi11G001949	Wax gourd	carwgoB0322

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03655	Carg25887	Silver-seed gourd	carcarB290

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03655	Cucumber (Chinese Long) v2	carcuB0278
Carg03655	Cucumber (Chinese Long) v2	carcuB0280
Carg03655	Cucumber (Chinese Long) v3	carcucB0280
Carg03655	Cucumber (Chinese Long) v3	carcucB0282
Carg03655	Bottle gourd (USVL1VR-Ls)	carlsiB222
Carg03655	Bottle gourd (USVL1VR-Ls)	carlsiB223
Carg03655	Melon (DHL92) v3.5.1	carmeB0252
Carg03655	Melon (DHL92) v3.5.1	carmeB0253
Carg03655	Melon (DHL92) v3.6.1	carmedB0262
Carg03655	Melon (DHL92) v3.6.1	carmedB0263
Carg03655	Watermelon (Charleston Gray)	carwcgB0241
Carg03655	Watermelon (Charleston Gray)	carwcgB0242
Carg03655	Watermelon (97103) v1	carwmB0238
Carg03655	Watermelon (97103) v1	carwmB0239
Carg03655	Watermelon (97103) v2	carwmbB0255
Carg03655	Watermelon (97103) v2	carwmbB0256
Carg03655	Wax gourd	carwgoB0317
Carg03655	Wax gourd	carwgoB0330
Carg03655	Silver-seed gourd	carcarB276
Carg03655	Silver-seed gourd	carcarB289
Carg03655	Silver-seed gourd	carcarB292
Carg03655	Silver-seed gourd	carcarB294
Carg03655	Cucumber (Gy14) v2	carcgybB0267
Carg03655	Cucumber (Gy14) v1	carcgyB0291
Carg03655	Cucumber (Gy14) v1	carcgyB0293
Carg03655	Cucurbita maxima (Rimu)	carcmaB0345
Carg03655	Cucurbita maxima (Rimu)	carcmaB0347
Carg03655	Cucurbita maxima (Rimu)	carcmaB0348
Carg03655	Cucurbita maxima (Rimu)	carcmaB0351
Carg03655	Cucurbita moschata (Rifu)	carcmoB0348
Carg03655	Cucurbita moschata (Rifu)	carcmoB0349
Carg03655	Cucurbita moschata (Rifu)	carcmoB0352
Carg03655	Cucurbita pepo (Zucchini)	carcpeB0348
Carg03655	Cucurbita pepo (Zucchini)	carcpeB0350
Carg03655	Cucurbita pepo (Zucchini)	carcpeB0351
Carg03655	Cucurbita pepo (Zucchini)	carcpeB0354
Carg03655	Wild cucumber (PI 183967)	carcpiB0282
Carg03655	Wild cucumber (PI 183967)	carcpiB0284