Carg25823 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25823
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ras-related protein like
Location	Cucurbita_argyrosperma_scaffold_332 : 147395 .. 149309 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCTCCGTAGACGGACTTTGCTTAAGGTTATCGTTCTCGGTGATAGCGGGTATGTGCCATCATCACCTATGGTTCCTCTGCTGCTTACTTGTTTTATTTTGGATTTCGATTTGAATGGTGTTTGATTTTGATTTCAGGGTTGGTAAGACGTCGTTGATGAATCAGTATCCTTCGAAAATTTTGTTGATAATGGTATTGATCTAAGTTTTGAGCATTTATTTTCGATCCTGGAATTTATGTTTCACTAGCTCTTATTTTGCCATTCATTTCCTAATTGGGTACGCCCCTTGCTTCAGTTCATGTGGAATAATGAGATTAATCATCTTCTGTTGGTGAGAGATCTTTGAATAATTTGTGTTTTCTTTGGTTTTAACTTTATTTGACCATTTGTTTCTATATTCTCCTCGGTATTAGTTCTAACACATAGCTTATTGAGATTTTGATTCGTTGGAAATTGATGTTGAGTTAGCATTACCGTTGAATTGGAATATGGGGCCTTAACTAGCCATTTAGATATGTGCATAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGTGCTGATTTTGTCACCAAGGAACTTCAAATTGATGACAGGCTTGTCACACTACAAGTACGTTCTACTTCATAAAATCATTTCCTTTCAATAGCGTGGAGGCTGTGTTCACTTTGGCATGATTTTGTTCTCATGTTTATGCTATATCTATAACATTTGCATTGCTAGATATGGGACACGGCCGGACAAGAGAGGTTTCAAAGTCTTGGAGTTGCATTCTATAGAGGGGCAGATTGCTGTGTTCTAGTCTATGATGTTAACGTGATGAAGTCATTCGACACACTTGACAATTGGCATGATGAGTTTCTCAGACAGGTGAATCAATTCTGTTCCTTAAATTTTCTCGATTTTTCTGATGGATGTATTCACGGTTGAGCTTGGTTATTACTGCTCTGTTACTAGGAAGTTTTATTATGGTTTGGGATTGTTGTTTTAGTTCGATTTTTAAGATTTATATACTTCGTATGGTTTGGGGTTGTTGTTTTAGGTCTTAATTTAAATAGCTAATGTACAACCTTTGCTCCTTTAAGCTTTTTCCAAACACCTTTAGAGGTCTTTGTGTATTATAAACCGTGCTACTACCTTAAGTCGAGGAACAACCACCTTGGAAGCCATTTGTGCCTGGCTTGTAAATATTGTTTTGGCCTTTGAATGAGTGGCATTCTTCATTCTGGTGTGTACCCGTTTCTTTACCTTTGCAAGGCTATACCCTGCCTCTTCATTTTCTTCTTCTCATTGTCAAAGTATGGTTTTAATTGGATTACACTGCAATGCATGGTGTCGCTGAGATAATCATTGATGCTTCTTAGGTTCGTGATGATAGCGTAATTAAATAAAGATTAAAAGACAACGATGTCTGAATGCAGATTTTTACTCGCAAAAAACAAGGCATATATGATCCATTAGAGAATTAAAAGAAAGATACTAGTACATACATGCGCTCGTAGCTCTCCATGTATGCTTAGGTTGTGCGAGTTTGAGTGTGTTTATTTGTACTGATCTTTTTGTTTATTTGGAGTCTAAATTAGTATTTTGTCTTTCAGGCAAACCCATCTGACCCCAGGACGTTCCCATTCATATTACTCGGAAATAAGATCGACATTGATGGTGGGAATAGTCGAGTGGTAAGCTATAAGGACGTCTGAACCTGCCACTTCTGAGATGTGTATTTTGTTTTTATGTTGATCTGATTATTATTACTGTAGGTCTCTGAGAAGAAAGCTAGGGAATGGTGTGCTTCAAAAGATAATATTCCTTACTTCGAGACATCGGCTAAAGAAGACTACAACGTTGATGCTGCTTTCTTATGCATTGCCAAGACTGCATTAGCCAACGAACACGAACAGGATATGTAA

mRNA sequence

ATGTCGCTCCGTAGACGGACTTTGCTTAAGGTTATCGTTCTCGGTGATAGCGGGGTTGGTAAGACGTCGTTGATGAATCAGTATCCTTCGAAAATTTTGTTGATAATGCCATTTAGATATGTGCATAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGTGCTGATTTTGTCACCAAGGAACTTCAAATTGATGACAGGCTTGTCACACTACAAATATGGGACACGGCCGGACAAGAGAGGTTTCAAAGTCTTGGAGTTGCATTCTATAGAGGGGCAGATTGCTGTGTTCTAGTCTATGATGTTAACGTGATGAAGTCATTCGACACACTTGACAATTGGCATGATGAGTTTCTCAGACAGGCAAACCCATCTGACCCCAGGACGTTCCCATTCATATTACTCGGAAATAAGATCGACATTGATGGTGGGAATAGTCGAGTGGTCTCTGAGAAGAAAGCTAGGGAATGGTGTGCTTCAAAAGATAATATTCCTTACTTCGAGACATCGGCTAAAGAAGACTACAACGTTGATGCTGCTTTCTTATGCATTGCCAAGACTGCATTAGCCAACGAACACGAACAGGATATGTAA

Coding sequence (CDS)

ATGTCGCTCCGTAGACGGACTTTGCTTAAGGTTATCGTTCTCGGTGATAGCGGGGTTGGTAAGACGTCGTTGATGAATCAGTATCCTTCGAAAATTTTGTTGATAATGCCATTTAGATATGTGCATAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGTGCTGATTTTGTCACCAAGGAACTTCAAATTGATGACAGGCTTGTCACACTACAAATATGGGACACGGCCGGACAAGAGAGGTTTCAAAGTCTTGGAGTTGCATTCTATAGAGGGGCAGATTGCTGTGTTCTAGTCTATGATGTTAACGTGATGAAGTCATTCGACACACTTGACAATTGGCATGATGAGTTTCTCAGACAGGCAAACCCATCTGACCCCAGGACGTTCCCATTCATATTACTCGGAAATAAGATCGACATTGATGGTGGGAATAGTCGAGTGGTCTCTGAGAAGAAAGCTAGGGAATGGTGTGCTTCAAAAGATAATATTCCTTACTTCGAGACATCGGCTAAAGAAGACTACAACGTTGATGCTGCTTTCTTATGCATTGCCAAGACTGCATTAGCCAACGAACACGAACAGGATATGTAA

Protein sequence

MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLRQANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAAFLCIAKTALANEHEQDM

Homology

[Close]

BLAST of Carg25823 vs. NCBI nr
Match: XP_022932075.1 (ras-related protein Rab7 isoform X1 [Cucurbita moschata] >XP_022932076.1 ras-related protein Rab7 isoform X1 [Cucurbita moschata])

HSP 1 Score: 372.1 bits (954), Expect = 1.2e-99
Identity = 184/197 (93.40%), Postives = 185/197 (93.91%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           MSLRRRTLLKVIVLGDSGVGKTSLMNQ            YVHKKFSQQYKATIGADFVTK
Sbjct: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQ------------YVHKKFSQQYKATIGADFVTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR
Sbjct: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120

Query: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180
           QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA
Sbjct: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180

Query: 181 FLCIAKTALANEHEQDM 198
           FLCIAKTALANEHEQD+
Sbjct: 181 FLCIAKTALANEHEQDI 185

[Close]

BLAST of Carg25823 vs. NCBI nr
Match: XP_022932077.1 (ras-related protein Rab7 isoform X2 [Cucurbita moschata])

HSP 1 Score: 372.1 bits (954), Expect = 1.2e-99
Identity = 184/197 (93.40%), Postives = 185/197 (93.91%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           MSLRRRTLLKVIVLGDSGVGKTSLMNQ            YVHKKFSQQYKATIGADFVTK
Sbjct: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQ------------YVHKKFSQQYKATIGADFVTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR
Sbjct: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120

Query: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180
           QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA
Sbjct: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180

Query: 181 FLCIAKTALANEHEQDM 198
           FLCIAKTALANEHEQD+
Sbjct: 181 FLCIAKTALANEHEQDI 185

[Close]

BLAST of Carg25823 vs. NCBI nr
Match: XP_022972894.1 (ras-related protein Rab7 isoform X2 [Cucurbita maxima] >XP_023520876.1 ras-related protein Rab7 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372.1 bits (954), Expect = 1.2e-99
Identity = 184/197 (93.40%), Postives = 185/197 (93.91%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           MSLRRRTLLKVIVLGDSGVGKTSLMNQ            YVHKKFSQQYKATIGADFVTK
Sbjct: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQ------------YVHKKFSQQYKATIGADFVTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR
Sbjct: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120

Query: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180
           QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA
Sbjct: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180

Query: 181 FLCIAKTALANEHEQDM 198
           FLCIAKTALANEHEQD+
Sbjct: 181 FLCIAKTALANEHEQDI 185

[Close]

BLAST of Carg25823 vs. NCBI nr
Match: XP_022972893.1 (ras-related protein Rab7 isoform X1 [Cucurbita maxima])

HSP 1 Score: 372.1 bits (954), Expect = 1.2e-99
Identity = 184/197 (93.40%), Postives = 185/197 (93.91%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           MSLRRRTLLKVIVLGDSGVGKTSLMNQ            YVHKKFSQQYKATIGADFVTK
Sbjct: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQ------------YVHKKFSQQYKATIGADFVTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR
Sbjct: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120

Query: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180
           QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA
Sbjct: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180

Query: 181 FLCIAKTALANEHEQDM 198
           FLCIAKTALANEHEQD+
Sbjct: 181 FLCIAKTALANEHEQDI 185

[Close]

BLAST of Carg25823 vs. NCBI nr
Match: XP_022930211.1 (ras-related protein Rab7-like [Cucurbita moschata] >XP_022974789.1 ras-related protein Rab7-like [Cucurbita maxima] >XP_023536071.1 ras-related protein Rab7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367.5 bits (942), Expect = 2.9e-98
Identity = 181/197 (91.88%), Postives = 184/197 (93.40%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           MSLRRRTLLKVIVLGDSGVGKTSLMNQ            YVHKKFSQQYKATIGADFVTK
Sbjct: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQ------------YVHKKFSQQYKATIGADFVTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR
Sbjct: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120

Query: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180
           QANP DPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASK+NIPYFETSA+EDYNVDAA
Sbjct: 121 QANPPDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKENIPYFETSAREDYNVDAA 180

Query: 181 FLCIAKTALANEHEQDM 198
           FLCIAKTALANEHEQD+
Sbjct: 181 FLCIAKTALANEHEQDI 185

[Close]

BLAST of Carg25823 vs. TAIR10
Match: AT1G22740.1 (RAB GTPase homolog G3B)

HSP 1 Score: 324.7 bits (831), Expect = 3.9e-89
Identity = 159/197 (80.71%), Postives = 171/197 (86.80%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           MS RRRTLLKVI+LGDSGVGKTSLMNQ            YV+ KFSQQYKATIGADFVTK
Sbjct: 1   MSTRRRTLLKVIILGDSGVGKTSLMNQ------------YVNNKFSQQYKATIGADFVTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN +KSF++LDNWH+EFL 
Sbjct: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLT 120

Query: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180
           +A+P DP  FPFILLGNK+DIDGGNSRVVSEKKAREWCA K NI YFETSAKEDYNVD +
Sbjct: 121 RASPRDPMAFPFILLGNKVDIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDS 180

Query: 181 FLCIAKTALANEHEQDM 198
           FLCI K ALANE +QD+
Sbjct: 181 FLCITKLALANERDQDI 185

[Close]

BLAST of Carg25823 vs. TAIR10
Match: AT4G09720.3 (RAB GTPase homolog G3A)

HSP 1 Score: 315.1 bits (806), Expect = 3.1e-86
Identity = 155/208 (74.52%), Postives = 173/208 (83.17%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           M+ RRRTLLKVIVLGDSGVGKTSLMNQ            YVHKKFS QYKATIGADFVTK
Sbjct: 1   MATRRRTLLKVIVLGDSGVGKTSLMNQ------------YVHKKFSMQYKATIGADFVTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           ELQI ++LVTLQIWDTAGQERFQSLG AFYRGADCC LVYDVNV++SFD L+ WH+EFL+
Sbjct: 61  ELQIGEKLVTLQIWDTAGQERFQSLGAAFYRGADCCALVYDVNVLRSFDNLETWHEEFLK 120

Query: 121 Q-----------ANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFET 180
           Q           A+PSDP+TFPFI+LGNKID+DGG+SRVVS+KKA +WCAS  NIPYFET
Sbjct: 121 QAWNIGMWTIAEASPSDPKTFPFIVLGNKIDVDGGSSRVVSDKKAADWCASNGNIPYFET 180

Query: 181 SAKEDYNVDAAFLCIAKTALANEHEQDM 198
           SAK+D+NVD AFL IAKTALANEHEQD+
Sbjct: 181 SAKDDFNVDEAFLTIAKTALANEHEQDI 196

[Close]

BLAST of Carg25823 vs. TAIR10
Match: AT1G52280.1 (RAB GTPase homolog G3D)

HSP 1 Score: 304.7 bits (779), Expect = 4.2e-83
Identity = 147/196 (75.00%), Postives = 164/196 (83.67%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           MS RRR LLKVI+LGDSGVGKTSLMNQ            +V++KFS QYKATIGADF+TK
Sbjct: 1   MSSRRRVLLKVIILGDSGVGKTSLMNQ------------FVNRKFSNQYKATIGADFLTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           E+QIDDR+ TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFD L+NW +EFL 
Sbjct: 61  EVQIDDRIFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLI 120

Query: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180
           QA+PSDP  FPF++LGNK D+DGG SRVVSEKKA+ WCASK NIPYFETSAKE +NVDAA
Sbjct: 121 QASPSDPENFPFVVLGNKTDVDGGKSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAA 180

Query: 181 FLCIAKTALANEHEQD 197
           F CI K A  NE E++
Sbjct: 181 FECITKNAFKNEPEEE 184

[Close]

BLAST of Carg25823 vs. TAIR10
Match: AT3G16100.1 (RAB GTPase homolog G3C)

HSP 1 Score: 298.5 bits (763), Expect = 3.0e-81
Identity = 144/197 (73.10%), Postives = 165/197 (83.76%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           M+ RRR LLKVI+LGDSGVGKTSLMNQ            +V++KFS QYKATIGADF+TK
Sbjct: 1   MASRRRVLLKVIILGDSGVGKTSLMNQ------------FVNRKFSNQYKATIGADFLTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           E+QIDDR+ TLQIWDTAGQERFQSLGVAFYRGADCCVLV DVNVMKSF+ L+NW +EFL 
Sbjct: 61  EVQIDDRIFTLQIWDTAGQERFQSLGVAFYRGADCCVLVNDVNVMKSFENLNNWREEFLI 120

Query: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180
           QA+PSDP  FPF++LGNK D+DGG SRVV+EKKA+ WCASK NIPYFETSAK+  NVDAA
Sbjct: 121 QASPSDPENFPFVVLGNKTDVDGGKSRVVTEKKAKSWCASKGNIPYFETSAKDGVNVDAA 180

Query: 181 FLCIAKTALANEHEQDM 198
           F CIAK AL NE E+++
Sbjct: 181 FECIAKNALKNEPEEEV 185

[Close]

BLAST of Carg25823 vs. TAIR10
Match: AT2G21880.1 (RAB GTPase homolog 7A)

HSP 1 Score: 297.4 bits (760), Expect = 6.7e-81
Identity = 143/194 (73.71%), Postives = 162/194 (83.51%), Query Frame = 0


Query: 2   SLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTKE 61
           SL+ RTLLKVIVLGDSGVGKTSLMNQ            YV+KKF++QYKATIGADFVTKE
Sbjct: 3   SLKNRTLLKVIVLGDSGVGKTSLMNQ------------YVYKKFNKQYKATIGADFVTKE 62

Query: 62  LQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLRQ 121
           L ID++ VTLQIWDTAGQERFQSLG AFYRGADCCVLVYDVN +KSF+TL+NWH EFL+Q
Sbjct: 63  LHIDEKSVTLQIWDTAGQERFQSLGAAFYRGADCCVLVYDVNNLKSFETLNNWHTEFLKQ 122

Query: 122 ANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAAF 181
           ANP +P TFPF+L+GNK D+DGGNSRVVS K+A EWC SK NIPY ETSAKED N+D AF
Sbjct: 123 ANPMEPETFPFVLIGNKTDVDGGNSRVVSNKRAIEWCGSKGNIPYHETSAKEDTNIDEAF 182

Query: 182 LCIAKTALANEHEQ 196
           L +A  AL+NE +Q
Sbjct: 183 LSVAHIALSNERKQ 184

[Close]

BLAST of Carg25823 vs. Swiss-Prot
Match: sp|Q43463|RAB7_SOYBN (Ras-related protein Rab7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 2.9e-97
Identity = 174/197 (88.32%), Postives = 181/197 (91.88%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           MSLRRRTLLKVIVLGDSGVGKTSLMNQ            YVHKKFSQQYKATIGADFVTK
Sbjct: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQ------------YVHKKFSQQYKATIGADFVTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTL+NWH+EFL+
Sbjct: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLENWHEEFLK 120

Query: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180
           QANP DPR FPFILLGNKIDIDGGNSRVVSEKKA++WCA+K NIPYFETSAKEDYNVDAA
Sbjct: 121 QANPPDPRAFPFILLGNKIDIDGGNSRVVSEKKAKDWCAAKGNIPYFETSAKEDYNVDAA 180

Query: 181 FLCIAKTALANEHEQDM 198
           FLCIAK ALANEHEQD+
Sbjct: 181 FLCIAKAALANEHEQDI 185

[Close]

BLAST of Carg25823 vs. Swiss-Prot
Match: sp|Q41640|RAB7_VIGAC (Ras-related protein Rab7 OS=Vigna aconitifolia OX=3918 PE=2 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 6.4e-97
Identity = 173/197 (87.82%), Postives = 181/197 (91.88%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           MSLRRRTLLKVIVLGD+GVGKTSLMNQ            YVHKKFSQQYKATIGADFVTK
Sbjct: 1   MSLRRRTLLKVIVLGDTGVGKTSLMNQ------------YVHKKFSQQYKATIGADFVTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVL YDVNVMKSFDTLDNWH+EFL+
Sbjct: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLAYDVNVMKSFDTLDNWHEEFLK 120

Query: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180
           QANP DPR+FPFILLGNKIDIDGGNSRVVSEKKA++WCASK NIPYFETSAKED+NVDAA
Sbjct: 121 QANPPDPRSFPFILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAKEDFNVDAA 180

Query: 181 FLCIAKTALANEHEQDM 198
           FLCIAK ALANEHEQD+
Sbjct: 181 FLCIAKAALANEHEQDI 185

[Close]

BLAST of Carg25823 vs. Swiss-Prot
Match: sp|O04157|RAG3B_ARATH (Ras-related protein RABG3b OS=Arabidopsis thaliana OX=3702 GN=RABG3B PE=1 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 7.1e-88
Identity = 159/197 (80.71%), Postives = 171/197 (86.80%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           MS RRRTLLKVI+LGDSGVGKTSLMNQ            YV+ KFSQQYKATIGADFVTK
Sbjct: 1   MSTRRRTLLKVIILGDSGVGKTSLMNQ------------YVNNKFSQQYKATIGADFVTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN +KSF++LDNWH+EFL 
Sbjct: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLT 120

Query: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180
           +A+P DP  FPFILLGNK+DIDGGNSRVVSEKKAREWCA K NI YFETSAKEDYNVD +
Sbjct: 121 RASPRDPMAFPFILLGNKVDIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDS 180

Query: 181 FLCIAKTALANEHEQDM 198
           FLCI K ALANE +QD+
Sbjct: 181 FLCITKLALANERDQDI 185

[Close]

BLAST of Carg25823 vs. Swiss-Prot
Match: sp|Q948K8|RAG3A_ARATH (Ras-related protein RABG3a OS=Arabidopsis thaliana OX=3702 GN=RABG3A PE=2 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 1.6e-87
Identity = 155/197 (78.68%), Postives = 173/197 (87.82%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           M+ RRRTLLKVIVLGDSGVGKTSLMNQ            YVHKKFS QYKATIGADFVTK
Sbjct: 1   MATRRRTLLKVIVLGDSGVGKTSLMNQ------------YVHKKFSMQYKATIGADFVTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           ELQI ++LVTLQIWDTAGQERFQSLG AFYRGADCC LVYDVNV++SFD L+ WH+EFL+
Sbjct: 61  ELQIGEKLVTLQIWDTAGQERFQSLGAAFYRGADCCALVYDVNVLRSFDNLETWHEEFLK 120

Query: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180
           QA+PSDP+TFPFI+LGNKID+DGG+SRVVS+KKA +WCAS  NIPYFETSAK+D+NVD A
Sbjct: 121 QASPSDPKTFPFIVLGNKIDVDGGSSRVVSDKKAADWCASNGNIPYFETSAKDDFNVDEA 180

Query: 181 FLCIAKTALANEHEQDM 198
           FL IAKTALANEHEQD+
Sbjct: 181 FLTIAKTALANEHEQDI 185

[Close]

BLAST of Carg25823 vs. Swiss-Prot
Match: sp|Q9XER8|RAB7_GOSHI (Ras-related protein Rab7 OS=Gossypium hirsutum OX=3635 GN=RAB7 PE=2 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 6.8e-83
Identity = 148/197 (75.13%), Postives = 168/197 (85.28%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           M+ RRR LLKVI+LGDSGVGKTSLMNQ            YV++KFS QYKATIGADF+TK
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQ------------YVNRKFSNQYKATIGADFLTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           E+Q DDRL TLQIWDTAGQERFQSLGVAFYRGADCCVLV+DVNVMKSFD L+NW +EFL 
Sbjct: 61  EVQFDDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLI 120

Query: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180
           QA+PSDP  FPF++LGNK+D+DGGNSRVVSEKKA+ WCASK NIPYFETSAKE +NVDAA
Sbjct: 121 QASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAA 180

Query: 181 FLCIAKTALANEHEQDM 198
           F CIA+ AL NE E+++
Sbjct: 181 FECIARNALKNEPEEEI 185

[Close]

BLAST of Carg25823 vs. TrEMBL
Match: tr|A0A1S3BJ29|A0A1S3BJ29_CUCME (ras-related protein Rab7 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490155 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 2.5e-98
Identity = 181/197 (91.88%), Postives = 183/197 (92.89%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           MS RRRTLLKVIVLGDSGVGKTSLMNQ            YVHKKFSQQYKATIGADFVTK
Sbjct: 1   MSFRRRTLLKVIVLGDSGVGKTSLMNQ------------YVHKKFSQQYKATIGADFVTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR
Sbjct: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120

Query: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180
           QANP DPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASK+NIPYFETSAKEDYNVDAA
Sbjct: 121 QANPPDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKENIPYFETSAKEDYNVDAA 180

Query: 181 FLCIAKTALANEHEQDM 198
           FLCIAKTALANEHEQD+
Sbjct: 181 FLCIAKTALANEHEQDI 185

[Close]

BLAST of Carg25823 vs. TrEMBL
Match: tr|A0A0A0K5B9|A0A0A0K5B9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G206950 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 2.5e-98
Identity = 181/197 (91.88%), Postives = 183/197 (92.89%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           MS RRRTLLKVIVLGDSGVGKTSLMNQ            YVHKKFSQQYKATIGADFVTK
Sbjct: 1   MSFRRRTLLKVIVLGDSGVGKTSLMNQ------------YVHKKFSQQYKATIGADFVTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR
Sbjct: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120

Query: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180
           QANP DPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASK+NIPYFETSAKEDYNVDAA
Sbjct: 121 QANPPDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKENIPYFETSAKEDYNVDAA 180

Query: 181 FLCIAKTALANEHEQDM 198
           FLCIAKTALANEHEQD+
Sbjct: 181 FLCIAKTALANEHEQDI 185

[Close]

BLAST of Carg25823 vs. TrEMBL
Match: tr|A0A1S3BHK3|A0A1S3BHK3_CUCME (ras-related protein Rab7 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490155 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 3.6e-97
Identity = 178/195 (91.28%), Postives = 182/195 (93.33%), Query Frame = 0


Query: 3   LRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTKEL 62
           ++RRTLLKVIVLGDSGVGKTSLMNQ            YVHKKFSQQYKATIGADFVTKEL
Sbjct: 1   MKRRTLLKVIVLGDSGVGKTSLMNQ------------YVHKKFSQQYKATIGADFVTKEL 60

Query: 63  QIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLRQA 122
           QIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLRQA
Sbjct: 61  QIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLRQA 120

Query: 123 NPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAAFL 182
           NP DPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASK+NIPYFETSAKEDYNVDAAFL
Sbjct: 121 NPPDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKENIPYFETSAKEDYNVDAAFL 180

Query: 183 CIAKTALANEHEQDM 198
           CIAKTALANEHEQD+
Sbjct: 181 CIAKTALANEHEQDI 183

[Close]

BLAST of Carg25823 vs. TrEMBL
Match: tr|Q40211|Q40211_LOTJA (RAB7A OS=Lotus japonicus OX=34305 GN=rab7A PE=2 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 3.6e-97
Identity = 178/197 (90.36%), Postives = 184/197 (93.40%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           MSLRRRTLLKVIVLGDSGVGKTSLMNQ            YVHKKFSQQYKATIGADFVTK
Sbjct: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQ------------YVHKKFSQQYKATIGADFVTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWH+EFL+
Sbjct: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHEEFLK 120

Query: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180
           QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKA++WCASK NIPYFETSAKEDYNVDAA
Sbjct: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAKEDYNVDAA 180

Query: 181 FLCIAKTALANEHEQDM 198
           FLCIAKTALANEH+QD+
Sbjct: 181 FLCIAKTALANEHDQDI 185

[Close]

BLAST of Carg25823 vs. TrEMBL
Match: tr|A0A2P6PRK7|A0A2P6PRK7_ROSCH (Putative small GTPase superfamily, P-loop containing nucleoside triphosphate hydrolase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0273691 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 8.1e-97
Identity = 177/197 (89.85%), Postives = 184/197 (93.40%), Query Frame = 0


Query: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQYPSKILLIMPFRYVHKKFSQQYKATIGADFVTK 60
           MSLRRRTLLKVIVLGDSGVGKTSLMNQ            YVHKKFSQQYKATIGADFVTK
Sbjct: 1   MSLRRRTLLKVIVLGDSGVGKTSLMNQ------------YVHKKFSQQYKATIGADFVTK 60

Query: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHDEFLR 120
           ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWH+EFL+
Sbjct: 61  ELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDNWHEEFLK 120

Query: 121 QANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKDNIPYFETSAKEDYNVDAA 180
           QANP+DP+TFPFILLGNKIDIDGGNSRVVSEKKA++WCASK NIPYFETSAKEDYNVDAA
Sbjct: 121 QANPADPKTFPFILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAKEDYNVDAA 180

Query: 181 FLCIAKTALANEHEQDM 198
           FLCIAKTALANEHEQD+
Sbjct: 181 FLCIAKTALANEHEQDI 185

The following BLAST results are available for this feature:

BLAST of Carg25823 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932075.1	1.2e-99	93.40	ras-related protein Rab7 isoform X1 [Cucurbita moschata] >XP_022932076.1 ras-rel...	[more]
XP_022932077.1	1.2e-99	93.40	ras-related protein Rab7 isoform X2 [Cucurbita moschata]	[more]
XP_022972894.1	1.2e-99	93.40	ras-related protein Rab7 isoform X2 [Cucurbita maxima] >XP_023520876.1 ras-relat...	[more]
XP_022972893.1	1.2e-99	93.40	ras-related protein Rab7 isoform X1 [Cucurbita maxima]	[more]
XP_022930211.1	2.9e-98	91.88	ras-related protein Rab7-like [Cucurbita moschata] >XP_022974789.1 ras-related p...	[more]

BLAST of Carg25823 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22740.1	3.9e-89	80.71	RAB GTPase homolog G3B	[more]
AT4G09720.3	3.1e-86	74.52	RAB GTPase homolog G3A	[more]
AT1G52280.1	4.2e-83	75.00	RAB GTPase homolog G3D	[more]
AT3G16100.1	3.0e-81	73.10	RAB GTPase homolog G3C	[more]
AT2G21880.1	6.7e-81	73.71	RAB GTPase homolog 7A	[more]

BLAST of Carg25823 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q43463\|RAB7_SOYBN	2.9e-97	88.32	Ras-related protein Rab7 OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|Q41640\|RAB7_VIGAC	6.4e-97	87.82	Ras-related protein Rab7 OS=Vigna aconitifolia OX=3918 PE=2 SV=1	[more]
sp\|O04157\|RAG3B_ARATH	7.1e-88	80.71	Ras-related protein RABG3b OS=Arabidopsis thaliana OX=3702 GN=RABG3B PE=1 SV=1	[more]
sp\|Q948K8\|RAG3A_ARATH	1.6e-87	78.68	Ras-related protein RABG3a OS=Arabidopsis thaliana OX=3702 GN=RABG3A PE=2 SV=1	[more]
sp\|Q9XER8\|RAB7_GOSHI	6.8e-83	75.13	Ras-related protein Rab7 OS=Gossypium hirsutum OX=3635 GN=RAB7 PE=2 SV=1	[more]

BLAST of Carg25823 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BJ29\|A0A1S3BJ29_CUCME	2.5e-98	91.88	ras-related protein Rab7 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490155 PE=4...	[more]
tr\|A0A0A0K5B9\|A0A0A0K5B9_CUCSA	2.5e-98	91.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G206950 PE=4 SV=1	[more]
tr\|A0A1S3BHK3\|A0A1S3BHK3_CUCME	3.6e-97	91.28	ras-related protein Rab7 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490155 PE=4...	[more]
tr\|Q40211\|Q40211_LOTJA	3.6e-97	90.36	RAB7A OS=Lotus japonicus OX=34305 GN=rab7A PE=2 SV=1	[more]
tr\|A0A2P6PRK7\|A0A2P6PRK7_ROSCH	8.1e-97	89.85	Putative small GTPase superfamily, P-loop containing nucleoside triphosphate hyd...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003924	GTPase activity
GO:0005525	GTP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR005225	Small_GTP-bd_dom
IPR001806	Small_GTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25823-RA	Carg25823-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 44..60 score: 35.52 coord: 166..188 score: 40.39 coord: 128..141 score: 41.69 coord: 62..84 score: 50.7 coord: 9..30 score: 43.88
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 14..197 e-value: 6.9E-4 score: 6.8
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 11..191 e-value: 8.6E-11 score: 18.9
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 6..191 e-value: 2.8E-20 score: 83.3
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 9..191 e-value: 3.1E-84 score: 295.8
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 2..197 e-value: 1.7E-62 score: 212.0
None	No IPR available	PANTHER	PTHR24073:SF586	RAS-RELATED PROTEIN RABG3A-RELATED	coord: 1..194
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 1..194
None	No IPR available	PROSITE	PS51419	RAB	coord: 4..197 score: 30.196
None	No IPR available	CDD	cd01862	Rab7	coord: 9..194 e-value: 3.85756E-123 score: 347.344
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 10..188 e-value: 1.2E-50 score: 171.2
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 9..182 e-value: 3.5E-20 score: 70.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 5..191

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25823	CmaCh01G009470	Cucurbita maxima (Rimu)	carcmaB1476
Carg25823	CmoCh01G009870	Cucurbita moschata (Rifu)	carcmoB1432
Carg25823	Cp4.1LG00g02640	Cucurbita pepo (Zucchini)	carcpeB1484

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25823	Bottle gourd (USVL1VR-Ls)	carlsiB975