Carg25812 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25812
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Myb-like transcription factor family protein
Location	Cucurbita_argyrosperma_scaffold_332 : 23919 .. 24983 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATTATGCAGAATCATCACCACATCAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTCCGGAGCTTCATCACAGATTTGAGGAGGCTGTGAATCATCTCGGTGGAGCACATAGTTCTGTTTTCTTTCTCTTCTATTACATCTTCCTTCTTTTTCCTTTTCTTTGTGTTTCATTATTTTTTGTTGGTTTGTTGCAGAGGCCACTCCTAAGAGCTTGATGAGAGCAATGGGTATCACTGGGCTTAGGCTGTACCACCTCAAGAGCCATTTACAGGTTCTTCTTCTATTCTATGCTATATCAAATTATAAAAAAAATGCCCATTTGTTCTTGAAAGTTAATTATGTTTGTTTATGAGCCAGAAATTTAGATTGGGAAAAAGGCAGCAGTCTGAAGCCAATGCCCAACTCAAGCTGGAAGGTTAGTTCTCAATACAATCAATCCATCACAAAACTCTTCATTAACAATCTCTCACTTTTAGTTACTTTTTTTCTTTGAAGACTTGAAACAGATGCAGATAGAAGGTGGGAAATTGGACGTGGAAAACAGCGATGTGGGTCAAAATCATAACATGAAAGAGTAAAAACTCATCTCTGTTTTGAATTTGCCTTTTGTTGTGTAGACATTGCTTTGTGTTAATATTTTTTGGATGAACAATTGAAGGAGAAAGAAGATATGGGATGTTATGGAAATGCAAATGGAAGTAGAGAAGAGGGTGCAGGAGCAAATAGAAGTACAAAGGCATTTGCAGCTGAGAATTGAAGCACAAGGGAAGTACTTAAAGAGGGTGTTGAGGAAGGCATAAGAGACAATTGCAGGGTACGGTTGTTGTTCAGAAGCAGTGGAAGAGCTCTCTCAATTGGCTTCAATAGTGAGCTCTGGATGTGAGAGCTCATGTTTGTCAGAACAGAGCAGCTCTGTTTCTGAGGGAGATTGTAAGAGATTAACAATGCAAGAAAGTAAGGAGAATAATCAAGAGGAATTCAGAATGATCGACTTGAATGATGCAGCAACTGGAAGTGGAAGTGGATCAGAGTTGATTGAGTTTCTTTGA

mRNA sequence

AGAATTATGCAGAATCATCACCACATCAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTCCGGAGCTTCATCACAGATTTGAGGAGGCTGTGAATCATCTCGGTGGAGCACATAAGGCCACTCCTAAGAGCTTGATGAGAGCAATGGGTATCACTGGGCTTAGGCTGTACCACCTCAAGAGCCATTTACAGAAATTTAGATTGGGAAAAAGGCAGCAGTCTGAAGCCAATGCCCAACTCAAGCTGGAAGACTTGAAACAGATGCAGATAGAAGGTGGGAAATTGGACGTGGAAAACAGCGATGTGGGTCAAAATCATAACATGAAAGAGAGAAAGAAGATATGGGATGTTATGGAAATGCAAATGGAAGTAGAGAAGAGGGTGCAGGAGCAAATAGAAGTACAAAGGCATTTGCAGCTGAGAATTGAAGCACAAGGGAAGTACTTAAAGAGGACAATTGCAGGGTACGGTTGTTGTTCAGAAGCAGTGGAAGAGCTCTCTCAATTGGCTTCAATAGTGAGCTCTGGATGTGAGAGCTCATGTTTGTCAGAACAGAGCAGCTCTGTTTCTGAGGGAGATTGTAAGAGATTAACAATGCAAGAAAGTAAGGAGAATAATCAAGAGGAATTCAGAATGATCGACTTGAATGATGCAGCAACTGGAAGTGGAAGTGGATCAGAGTTGATTGAGTTTCTTTGA

Coding sequence (CDS)

ATGCAGAATCATCACCACATCAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTCCGGAGCTTCATCACAGATTTGAGGAGGCTGTGAATCATCTCGGTGGAGCACATAAGGCCACTCCTAAGAGCTTGATGAGAGCAATGGGTATCACTGGGCTTAGGCTGTACCACCTCAAGAGCCATTTACAGAAATTTAGATTGGGAAAAAGGCAGCAGTCTGAAGCCAATGCCCAACTCAAGCTGGAAGACTTGAAACAGATGCAGATAGAAGGTGGGAAATTGGACGTGGAAAACAGCGATGTGGGTCAAAATCATAACATGAAAGAGAGAAAGAAGATATGGGATGTTATGGAAATGCAAATGGAAGTAGAGAAGAGGGTGCAGGAGCAAATAGAAGTACAAAGGCATTTGCAGCTGAGAATTGAAGCACAAGGGAAGTACTTAAAGAGGACAATTGCAGGGTACGGTTGTTGTTCAGAAGCAGTGGAAGAGCTCTCTCAATTGGCTTCAATAGTGAGCTCTGGATGTGAGAGCTCATGTTTGTCAGAACAGAGCAGCTCTGTTTCTGAGGGAGATTGTAAGAGATTAACAATGCAAGAAAGTAAGGAGAATAATCAAGAGGAATTCAGAATGATCGACTTGAATGATGCAGCAACTGGAAGTGGAAGTGGATCAGAGTTGATTGAGTTTCTTTGA

Protein sequence

MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYHLKSHLQKFRLGKRQQSEANAQLKLEDLKQMQIEGGKLDVENSDVGQNHNMKERKKIWDVMEMQMEVEKRVQEQIEVQRHLQLRIEAQGKYLKRTIAGYGCCSEAVEELSQLASIVSSGCESSCLSEQSSSVSEGDCKRLTMQESKENNQEEFRMIDLNDAATGSGSGSELIEFL

Homology

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BLAST of Carg25812 vs. NCBI nr
Match: XP_022972858.1 (myb family transcription factor PHL8-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 362.1 bits (928), Expect = 1.4e-96
Identity = 213/243 (87.65%), Postives = 219/243 (90.12%), Query Frame = 0


Query: 1   MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYH 60
           MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMR MGITGLRLYH
Sbjct: 1   MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRVMGITGLRLYH 60

Query: 61  LKSHLQKFRLGKRQQSEANAQLKLEDLKQMQIEGGKLDVENSDVGQNHNMKERKKIWDVM 120
           LKSHLQKFRLG+  +SE   QLKLEDLKQMQI+GGKLDVENSDVGQNHN KERKKIWDVM
Sbjct: 61  LKSHLQKFRLGRSHKSETIPQLKLEDLKQMQIKGGKLDVENSDVGQNHNTKERKKIWDVM 120

Query: 121 EMQMEXXXXXXXXXXXXXXXXXXXXXXGKYLKR-------TIAGYGCCSEAVEELSQLAS 180
           EMQME    XXXXXXXXXXXXXXXXXX   LKR       TIAGYGCCSEA+EELSQLAS
Sbjct: 121 EMQMEVEKRXXXXXXXXXXXXXXXXXXXXXLKRVLRKAEETIAGYGCCSEALEELSQLAS 180

Query: 181 IVSSGCESSCLSEQSSSVSEGDCKRLTMQESKENNQEEFRMIDLNDAATGSGS--GSELI 235
           +VSSGCESSCLSEQSSSVSEGDCKRLTMQ+S ENNQEEFRMIDLNDAATGSGS  GSELI
Sbjct: 181 MVSSGCESSCLSEQSSSVSEGDCKRLTMQKSYENNQEEFRMIDLNDAATGSGSGIGSELI 240

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BLAST of Carg25812 vs. NCBI nr
Match: XP_023546754.1 (myb family transcription factor PHL8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360.9 bits (925), Expect = 3.2e-96
Identity = 213/249 (85.54%), Postives = 218/249 (87.55%), Query Frame = 0


Query: 1   MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYH 60
           MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMR MGITGLRLYH
Sbjct: 1   MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRVMGITGLRLYH 60

Query: 61  LKSHLQKFRLGKRQQSEANAQLKLEDLKQMQIEGGKLDVENSDVGQNHNMKERKKIWDVM 120
           LKSHLQKFRLGK QQSEANAQLKLEDLKQMQ++GGKLDVENSDVGQNHN KERKKIWDVM
Sbjct: 61  LKSHLQKFRLGKMQQSEANAQLKLEDLKQMQVKGGKLDVENSDVGQNHNTKERKKIWDVM 120

Query: 121 EMQMEXXXXXXXXXXXXXXXXXXXXXXGKYLKR-------TIAGYGCCSEAVEELSQLAS 180
           EMQME    XXXXXXXXXXXXXXXXXX   LKR       TIAGYGCCSEA+EELSQLAS
Sbjct: 121 EMQMEVEKRXXXXXXXXXXXXXXXXXXXXXLKRVLRKAEETIAGYGCCSEALEELSQLAS 180

Query: 181 IVSSGCESSCLSEQSSSVSEGDCKRLTMQESKENNQEEFRMIDLNDAAT--------GSG 235
           +VSSGCESSCLSEQSSSVSEGDCKRLTMQES ENNQEEFRM+DLNDAAT           
Sbjct: 181 MVSSGCESSCLSEQSSSVSEGDCKRLTMQESNENNQEEFRMVDLNDAATXXXXXXXXXXX 240

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BLAST of Carg25812 vs. NCBI nr
Match: XP_022946518.1 (myb family transcription factor PHL8-like [Cucurbita moschata])

HSP 1 Score: 352.4 bits (903), Expect = 1.1e-93
Identity = 212/251 (84.46%), Postives = 217/251 (86.45%), Query Frame = 0


Query: 1   MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYH 60
           MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYH
Sbjct: 1   MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYH 60

Query: 61  LKSHLQKFRLGKRQQSEANAQLKLEDLKQMQIEGGKLDVENSDVGQNHNMKERKKIWDVM 120
           LKSHLQKFRLGK  +SE   QLKLEDLKQ+QI+GGKLDVENSDVGQNHNMKERKKIWDVM
Sbjct: 61  LKSHLQKFRLGKSHKSETIPQLKLEDLKQVQIKGGKLDVENSDVGQNHNMKERKKIWDVM 120

Query: 121 EMQMEXXXXXXXXXXXXXXXXXXXXXXGKYLKR-------TIAGYGCCSEAVEELSQLAS 180
           EMQME  XXXXXXXXXXXXXXXXXXXX  YLKR       T AGYGCCSEA+EELSQLAS
Sbjct: 121 EMQMEVEXXXXXXXXXXXXXXXXXXXXXXYLKRVLRKAEETFAGYGCCSEALEELSQLAS 180

Query: 181 IVSSGCESSCLSEQSSSVSEGDCKRLTMQESKENNQEEFRMIDLNDAAT----------G 235
           +VSSGCESSCLSEQSSSVSEGDCKRLTMQES ENNQEEFRMIDLNDAAT           
Sbjct: 181 MVSSGCESSCLSEQSSSVSEGDCKRLTMQESNENNQEEFRMIDLNDAATXXXXXXXXXXX 240

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BLAST of Carg25812 vs. NCBI nr
Match: XP_022972859.1 (myb family transcription factor PHL8-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 260.8 bits (665), Expect = 4.5e-66
Identity = 166/196 (84.69%), Postives = 172/196 (87.76%), Query Frame = 0


Query: 48  MRAMGITGLRLYHLKSHLQKFRLGKRQQSEANAQLKLEDLKQMQIEGGKLDVENSDVGQN 107
           MR MGITGLRLYHLKSHLQKFRLG+  +SE   QLKLEDLKQMQI+GGKLDVENSDVGQN
Sbjct: 1   MRVMGITGLRLYHLKSHLQKFRLGRSHKSETIPQLKLEDLKQMQIKGGKLDVENSDVGQN 60

Query: 108 HNMKERKKIWDVMEMQMEXXXXXXXXXXXXXXXXXXXXXXGKYLKR-------TIAGYGC 167
           HN KERKKIWDVMEMQME    XXXXXXXXXXXXXXXXXX   LKR       TIAGYGC
Sbjct: 61  HNTKERKKIWDVMEMQMEVEKRXXXXXXXXXXXXXXXXXXXXXLKRVLRKAEETIAGYGC 120

Query: 168 CSEAVEELSQLASIVSSGCESSCLSEQSSSVSEGDCKRLTMQESKENNQEEFRMIDLNDA 227
           CSEA+EELSQLAS+VSSGCESSCLSEQSSSVSEGDCKRLTMQ+S ENNQEEFRMIDLNDA
Sbjct: 121 CSEALEELSQLASMVSSGCESSCLSEQSSSVSEGDCKRLTMQKSYENNQEEFRMIDLNDA 180

Query: 228 ATGSGS--GSELIEFL 235
           ATGSGS  GSELIEFL
Sbjct: 181 ATGSGSGIGSELIEFL 196

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BLAST of Carg25812 vs. NCBI nr
Match: XP_004138915.1 (PREDICTED: myb family transcription factor APL [Cucumis sativus] >KGN61374.1 hypothetical protein Csa_2G100560 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 2.6e-45
Identity = 159/281 (56.58%), Postives = 175/281 (62.28%), Query Frame = 0


Query: 1   MQNHH--HINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRL 60
           MQNHH  H+NLVLSTDAKPRLKWT +LH RF EAVNHLGGA KATPKSLMR MGITGL L
Sbjct: 1   MQNHHQQHMNLVLSTDAKPRLKWTHDLHQRFVEAVNHLGGADKATPKSLMRVMGITGLSL 60

Query: 61  YHLKSHLQKFRLGKRQQSEANAQLKLEDLKQMQIEGGKLD-VENSDVGQNHNMKERKKIW 120
           YHLKSHLQK+RLGK QQ+E NAQLKLE   +MQ +GG +D  EN D              
Sbjct: 61  YHLKSHLQKYRLGKSQQAETNAQLKLE---EMQKKGGHIDGEENKDRXXXXXXXXXXXXX 120

Query: 121 DVMEMQMEXXXXXXXXXXXXXXXXXXXXXXGKYLK-------RTIAGYGCCSEAVE---- 180
                   XXXXXXXXXXXXXXXXXXXXXXGKYLK        TIAGYGCCSEA+E    
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKYLKIVLRKAQETIAGYGCCSEALEEAKA 180

Query: 181 ELSQLASIVSSGCESSCLSEQSSS----------VSEGDC---KRLTMQESKE------- 235
           ELSQLAS+VSSGC+SSCLSE + S          V    C     LT  E+ E       
Sbjct: 181 ELSQLASMVSSGCQSSCLSELTDSTELNFKGIERVGRRMCSIESSLTSSETSEEAPITKK 240

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BLAST of Carg25812 vs. TAIR10
Match: AT1G69580.2 (Homeodomain-like superfamily protein)

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-26
Identity = 103/208 (49.52%), Postives = 137/208 (65.87%), Query Frame = 0


Query: 1   MQNHH-HINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLY 60
           + NH   ++LVLSTDAKPRLKWT +LHH+F EAVN LGG +KATPK LM+ M I GL LY
Sbjct: 18  IDNHKAKMSLVLSTDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLY 77

Query: 61  HLKSHLQKFRLGKRQQSEANAQLKLEDLKQMQ----------IEGGKLDVENSDVGQNHN 120
           HLKSHLQK+RLGK  + + N +L++    + Q          + G  +  ENS+  ++  
Sbjct: 78  HLKSHLQKYRLGKSMKFDDN-KLEVSSASENQEVESKNDSRDLRGCSVTEENSNPAKDRG 137

Query: 121 MKERKKIWDVMEMQMEXXXXXXXXXXXXXXXXXXXXXXGKYL-------KRTIAGYGCCS 180
           +    +I + ++MQ  XXXXXXXXXXXXXXXXXXXXXX KYL       ++T+AGY   +
Sbjct: 138 L----QITEALQMQXXXXXXXXXXXXXXXXXXXXXXXXXKYLQSVLMKAQQTLAGYSSSN 197

Query: 181 EAVE----ELSQLASIVSSGCESSCLSE 187
             ++    ELS+LAS+V+ GC S+  SE
Sbjct: 198 LGMDFARTELSRLASMVNRGCPSTSFSE 220

[Close]

BLAST of Carg25812 vs. TAIR10
Match: AT5G18240.1 (myb-related protein 1)

HSP 1 Score: 112.5 bits (280), Expect = 3.6e-25
Identity = 56/94 (59.57%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 9   LVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYHLKSHLQKF 68
           L+LSTDAKPRLKWTP+LH RF EAVN LGG  KATPK++M+ MGI GL LYHLKSHLQK+
Sbjct: 38  LILSTDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKY 97

Query: 69  RLGKRQQSEANAQLKLEDLKQMQIEGGKLDVENS 103
           RL K    +AN+ L    +  M +E    +V+ S
Sbjct: 98  RLSKNLNGQANSSLNKTSVMTM-VEENPPEVDES 130

[Close]

BLAST of Carg25812 vs. TAIR10
Match: AT3G04030.3 (Homeodomain-like superfamily protein)

HSP 1 Score: 111.7 bits (278), Expect = 6.2e-25
Identity = 58/105 (55.24%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 9   LVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYHLKSHLQKF 68
           L+LSTDAKPRLKWTP+LH RF EAVN LGGA KATPK++M+ MGI GL LYHLKSHLQK+
Sbjct: 38  LILSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKY 97

Query: 69  RLGKRQQSEANAQLKLEDLKQMQIE----GGKLDVENSDVGQNHN 110
           RL K    +AN       +  M  E      ++  EN  +G   N
Sbjct: 98  RLSKNLNGQANNSFNKIGIMTMMEEKTPDADEIQSENLSIGPQPN 142

[Close]

BLAST of Carg25812 vs. TAIR10
Match: AT3G12730.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-23
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 9  LVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYHLKSHLQKF 68
          LVL+TD KPRL+WT ELH RF +AV HLGG  KATPK++MR MG+ GL LYHLKSHLQKF
Sbjct: 16 LVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQKF 75

Query: 69 RLGKRQQSE 78
          RLGK+   E
Sbjct: 76 RLGKQPHKE 84

[Close]

BLAST of Carg25812 vs. TAIR10
Match: AT3G24120.2 (Homeodomain-like superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 3.8e-22
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 9   LVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYHLKSHLQKF 68
           LVL+TD KPRL+WT ELH RF +AV  LGG  KATPK++MR MG+ GL LYHLKSHLQKF
Sbjct: 34  LVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKF 93

Query: 69  RLGKRQQSEANAQLK 84
           RLG++   E+    K
Sbjct: 94  RLGRQAGKESTENSK 108

[Close]

BLAST of Carg25812 vs. Swiss-Prot
Match: sp|F4I274|PHL8_ARATH (Myb family transcription factor PHL8 OS=Arabidopsis thaliana OX=3702 GN=PHL8 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.0e-26
Identity = 106/203 (52.22%), Postives = 136/203 (67.00%), Query Frame = 0


Query: 1   MQNHH-HINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLY 60
           + NH   ++LVLSTDAKPRLKWT +LHH+F EAVN LGG +KATPK LM+ M I GL LY
Sbjct: 18  IDNHKAKMSLVLSTDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLY 77

Query: 61  HLKSHLQKFRLGKRQQSEANAQLKLEDLKQMQIEGGKLDVEN----SDVGQNHN-MKERK 120
           HLKSHLQK+RLGK  + + N +L++    + Q    K D  +    S   +N N  KE  
Sbjct: 78  HLKSHLQKYRLGKSMKFDDN-KLEVSSASENQEVESKNDSRDLRGCSVTEENSNPAKEGL 137

Query: 121 KIWDVMEMQMEXXXXXXXXXXXXXXXXXXXXXXGKYL-------KRTIAGYGCCSEAVE- 180
           +I + ++MQ  XXXXXXXXXXXXXXXXXXXXXX KYL       ++T+AGY   +  ++ 
Sbjct: 138 QITEALQMQXXXXXXXXXXXXXXXXXXXXXXXXXKYLQSVLMKAQQTLAGYSSSNLGMDF 197

Query: 181 ---ELSQLASIVSSGCESSCLSE 187
              ELS+LAS+V+ GC S+  SE
Sbjct: 198 ARTELSRLASMVNRGCPSTSFSE 219

[Close]

BLAST of Carg25812 vs. Swiss-Prot
Match: sp|Q9FK47|PHLA_ARATH (Myb-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=MYR1 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.5e-24
Identity = 56/94 (59.57%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 9   LVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYHLKSHLQKF 68
           L+LSTDAKPRLKWTP+LH RF EAVN LGG  KATPK++M+ MGI GL LYHLKSHLQK+
Sbjct: 38  LILSTDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKY 97

Query: 69  RLGKRQQSEANAQLKLEDLKQMQIEGGKLDVENS 103
           RL K    +AN+ L    +  M +E    +V+ S
Sbjct: 98  RLSKNLNGQANSSLNKTSVMTM-VEENPPEVDES 130

[Close]

BLAST of Carg25812 vs. Swiss-Prot
Match: sp|Q9SQQ9|PHL9_ARATH (Myb-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=MYR2 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-23
Identity = 58/105 (55.24%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 9   LVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYHLKSHLQKF 68
           L+LSTDAKPRLKWTP+LH RF EAVN LGGA KATPK++M+ MGI GL LYHLKSHLQK+
Sbjct: 38  LILSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKY 97

Query: 69  RLGKRQQSEANAQLKLEDLKQMQIE----GGKLDVENSDVGQNHN 110
           RL K    +AN       +  M  E      ++  EN  +G   N
Sbjct: 98  RLSKNLNGQANNSFNKIGIMTMMEEKTPDADEIQSENLSIGPQPN 142

[Close]

BLAST of Carg25812 vs. Swiss-Prot
Match: sp|Q8VYI2|PHLC_ARATH (Myb family transcription factor PHL12 OS=Arabidopsis thaliana OX=3702 GN=PHL12 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.7e-22
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 9  LVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYHLKSHLQKF 68
          LVL+TD KPRL+WT ELH RF +AV HLGG  KATPK++MR MG+ GL LYHLKSHLQKF
Sbjct: 16 LVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQKF 75

Query: 69 RLGKRQQSE 78
          RLGK+   E
Sbjct: 76 RLGKQPHKE 84

[Close]

BLAST of Carg25812 vs. Swiss-Prot
Match: sp|Q8LAJ7|PHL3_ARATH (Protein PHR1-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=PHL3 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.8e-21
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 9  LVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYHLKSHLQKF 68
          LVL+TD KPRL+WT ELH RF +AV  LGG  KATPK++MR MG+ GL LYHLKSHLQKF
Sbjct: 30 LVLTTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKF 89

Query: 69 RLGKRQQSEA 79
          RLG++   E+
Sbjct: 90 RLGRQSCKES 99

[Close]

BLAST of Carg25812 vs. TrEMBL
Match: tr|A0A0A0LJX4|A0A0A0LJX4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G100560 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.7e-45
Identity = 159/281 (56.58%), Postives = 175/281 (62.28%), Query Frame = 0


Query: 1   MQNHH--HINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRL 60
           MQNHH  H+NLVLSTDAKPRLKWT +LH RF EAVNHLGGA KATPKSLMR MGITGL L
Sbjct: 1   MQNHHQQHMNLVLSTDAKPRLKWTHDLHQRFVEAVNHLGGADKATPKSLMRVMGITGLSL 60

Query: 61  YHLKSHLQKFRLGKRQQSEANAQLKLEDLKQMQIEGGKLD-VENSDVGQNHNMKERKKIW 120
           YHLKSHLQK+RLGK QQ+E NAQLKLE   +MQ +GG +D  EN D              
Sbjct: 61  YHLKSHLQKYRLGKSQQAETNAQLKLE---EMQKKGGHIDGEENKDRXXXXXXXXXXXXX 120

Query: 121 DVMEMQMEXXXXXXXXXXXXXXXXXXXXXXGKYLK-------RTIAGYGCCSEAVE---- 180
                   XXXXXXXXXXXXXXXXXXXXXXGKYLK        TIAGYGCCSEA+E    
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKYLKIVLRKAQETIAGYGCCSEALEEAKA 180

Query: 181 ELSQLASIVSSGCESSCLSEQSSS----------VSEGDC---KRLTMQESKE------- 235
           ELSQLAS+VSSGC+SSCLSE + S          V    C     LT  E+ E       
Sbjct: 181 ELSQLASMVSSGCQSSCLSELTDSTELNFKGIERVGRRMCSIESSLTSSETSEEAPITKK 240

[Close]

BLAST of Carg25812 vs. TrEMBL
Match: tr|A0A1S3B431|A0A1S3B431_CUCME (myb family transcription factor APL OS=Cucumis melo OX=3656 GN=LOC103485789 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.3e-40
Identity = 131/197 (66.50%), Postives = 143/197 (72.59%), Query Frame = 0


Query: 6   HINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYHLKSHL 65
           H+NLVLSTDAKPRLKWT ELH RF EAVN+LGGA KATPKSLMR MGITGL LYHLKSHL
Sbjct: 12  HMNLVLSTDAKPRLKWTHELHQRFVEAVNYLGGADKATPKSLMRVMGITGLSLYHLKSHL 71

Query: 66  QKFRLGKRQQSEANAQLKLEDLKQMQIEGGKLD-VENSDVGQNHNMKERKKIWDVMEMQM 125
           QK+RLGK QQ+E NAQ+KL+   +MQ + G  D  EN D                     
Sbjct: 72  QKYRLGKSQQAETNAQVKLQ---EMQKKSGHFDGEENKDXXXXXXXXXXXXXXXXXXXXX 131

Query: 126 EXXXXXXXXXXXXXXXXXXXXXXGKYLK-------RTIAGYGCCSEAVE----ELSQLAS 185
            XXXXXXXXXXXXXXXXXXXXXXGKYLK        TIAGYGCCSEA+E    ELSQLAS
Sbjct: 132 XXXXXXXXXXXXXXXXXXXXXXXGKYLKIVLRKAQETIAGYGCCSEALEEAKAELSQLAS 191

Query: 186 IVSSGCESSCLSEQSSS 191
           +VSSGC+SSCLSE + S
Sbjct: 192 MVSSGCQSSCLSELTDS 205

[Close]

BLAST of Carg25812 vs. TrEMBL
Match: tr|W9SPH9|W9SPH9_9ROSA (Myb family transcription factor APL OS=Morus notabilis OX=981085 GN=L484_015664 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.7e-35
Identity = 121/197 (61.42%), Postives = 142/197 (72.08%), Query Frame = 0


Query: 1   MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYH 60
           MQN  ++NLVLSTDAKPRLKWTPELHHRF EAVN LGGA KATPKSLMR MGI GL LYH
Sbjct: 1   MQN-QNMNLVLSTDAKPRLKWTPELHHRFVEAVNQLGGADKATPKSLMRVMGIPGLTLYH 60

Query: 61  LKSHLQKFRLGKRQQSEANAQLKLEDLKQMQIEGGKLDVENSDVGQNHNMKERKKIWDVM 120
           LKSHLQK+RLGK QQSE  +  K ED K++Q   G  + E +D G    + E  KI + +
Sbjct: 61  LKSHLQKYRLGKSQQSENCSDDKQEDYKEIQGSDGHFNREIND-GSQSEINESLKIAEAL 120

Query: 121 EMQMEXXXXXXXXXXXXXXXXXXXXXXGKYL-------KRTIAGYGCCSEAVE----ELS 180
           ++Q  XXXXXXXXXXXXXXXXXXXXXX KYL       + T+AGY   S  VE    ELS
Sbjct: 121 QLQXXXXXXXXXXXXXXXXXXXXXXXXXKYLQSVLKKAQETLAGYSSSSMGVEFAKTELS 180

Query: 181 QLASIVSSGCESSCLSE 187
           +L ++V++GC+SS  SE
Sbjct: 181 RLLNMVNTGCQSSSFSE 195

[Close]

BLAST of Carg25812 vs. TrEMBL
Match: tr|A0A0D2W0T1|A0A0D2W0T1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_012G187000 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.2e-34
Identity = 116/194 (59.79%), Postives = 137/194 (70.62%), Query Frame = 0


Query: 4   HHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYHLKS 63
           H ++NLVLSTD KPRLKWTP+LH RF EAVN LGGA KATPKSLMR MGI+GL LYHLKS
Sbjct: 13  HQNMNLVLSTDTKPRLKWTPQLHQRFVEAVNQLGGADKATPKSLMRIMGISGLTLYHLKS 72

Query: 64  HLQKFRLGKRQQSEANAQLKLEDLKQMQIEGGKLDVENSDVGQNHNMKERKKIWDVMEMQ 123
           HLQK+RLGK QQ+E     KL+D K+++   G     N   G ++ M E  +I   ++MQ
Sbjct: 73  HLQKYRLGKFQQTEICHSNKLDDYKEIRSNNG-----NFSDGTHNQMNESLQIAQALQMQ 132

Query: 124 MEXXXXXXXXXXXXXXXXXXXXXXGKYL-------KRTIAGYGCCSEAV----EELSQLA 183
           MEXXXXXXXXXXXXXXXXXXXXXXGKYL       + T+ GY   S  V     ELS+L 
Sbjct: 133 MEXXXXXXXXXXXXXXXXXXXXXXGKYLQLVLKKAQETLVGYSSSSVGVGLAKAELSRLG 192

Query: 184 SIVSSGCESSCLSE 187
           S+V++GC SS  SE
Sbjct: 193 SMVNTGCTSSLFSE 201

[Close]

BLAST of Carg25812 vs. TrEMBL
Match: tr|A0A0D2NCL8|A0A0D2NCL8_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G141900 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.6e-33
Identity = 120/197 (60.91%), Postives = 138/197 (70.05%), Query Frame = 0


Query: 1   MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRAMGITGLRLYH 60
           MQN   +NLVLSTDAKPRLKWTPELH RF EAVN LGG  KATPK+LMR +GI+GL LYH
Sbjct: 24  MQN-QDMNLVLSTDAKPRLKWTPELHQRFVEAVNQLGGPDKATPKNLMRVIGISGLTLYH 83

Query: 61  LKSHLQKFRLGKRQQSEANAQLKLEDLKQMQIEGGKLDVENSDVGQNHNMKERKKIWDVM 120
           LKSHLQKFRLGK QQ+E      L+D +++Q     L  + SD G +  M E  KI   +
Sbjct: 84  LKSHLQKFRLGKSQQTEICLSDNLDDYREIQSGNKDLSSDTSD-GTHKLMNESSKIAQAL 143

Query: 121 EMQMEXXXXXXXXXXXXXXXXXXXXXXGKYL-------KRTIAGYGCCSEAVE----ELS 180
           +MQ  XXXXXXXXXXXXXXXXXXXXXX KYL       + T+AGY   S  VE    ELS
Sbjct: 144 QMQXXXXXXXXXXXXXXXXXXXXXXXXXKYLQSVLKKAQETLAGYTSSSVGVELAKAELS 203

Query: 181 QLASIVSSGCESSCLSE 187
           QL S+V++GC SS LSE
Sbjct: 204 QLVSMVNTGCTSSSLSE 218

The following BLAST results are available for this feature:

BLAST of Carg25812 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022972858.1	1.4e-96	87.65	myb family transcription factor PHL8-like isoform X1 [Cucurbita maxima]	[more]
XP_023546754.1	3.2e-96	85.54	myb family transcription factor PHL8-like [Cucurbita pepo subsp. pepo]	[more]
XP_022946518.1	1.1e-93	84.46	myb family transcription factor PHL8-like [Cucurbita moschata]	[more]
XP_022972859.1	4.5e-66	84.69	myb family transcription factor PHL8-like isoform X2 [Cucurbita maxima]	[more]
XP_004138915.1	2.6e-45	56.58	PREDICTED: myb family transcription factor APL [Cucumis sativus] >KGN61374.1 hyp...	[more]

BLAST of Carg25812 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G69580.2	1.1e-26	49.52	Homeodomain-like superfamily protein	[more]
AT5G18240.1	3.6e-25	59.57	myb-related protein 1	[more]
AT3G04030.3	6.2e-25	55.24	Homeodomain-like superfamily protein	[more]
AT3G12730.1	1.5e-23	71.01	Homeodomain-like superfamily protein	[more]
AT3G24120.2	3.8e-22	64.00	Homeodomain-like superfamily protein	[more]

BLAST of Carg25812 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4I274\|PHL8_ARATH	7.0e-26	52.22	Myb family transcription factor PHL8 OS=Arabidopsis thaliana OX=3702 GN=PHL8 PE=...	[more]
sp\|Q9FK47\|PHLA_ARATH	6.5e-24	59.57	Myb-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=MYR1 PE=1 SV=1	[more]
sp\|Q9SQQ9\|PHL9_ARATH	1.1e-23	55.24	Myb-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=MYR2 PE=1 SV=1	[more]
sp\|Q8VYI2\|PHLC_ARATH	2.7e-22	71.01	Myb family transcription factor PHL12 OS=Arabidopsis thaliana OX=3702 GN=PHL12 P...	[more]
sp\|Q8LAJ7\|PHL3_ARATH	8.8e-21	67.14	Protein PHR1-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=PHL3 PE=1 SV=1	[more]

BLAST of Carg25812 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJX4\|A0A0A0LJX4_CUCSA	1.7e-45	56.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G100560 PE=4 SV=1	[more]
tr\|A0A1S3B431\|A0A1S3B431_CUCME	1.3e-40	66.50	myb family transcription factor APL OS=Cucumis melo OX=3656 GN=LOC103485789 PE=4...	[more]
tr\|W9SPH9\|W9SPH9_9ROSA	4.7e-35	61.42	Myb family transcription factor APL OS=Morus notabilis OX=981085 GN=L484_015664 ...	[more]
tr\|A0A0D2W0T1\|A0A0D2W0T1_GOSRA	5.2e-34	59.79	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_012G187000 PE=4 ...	[more]
tr\|A0A0D2NCL8\|A0A0D2NCL8_GOSRA	2.6e-33	60.91	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G141900 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR006447	Myb_dom_plants
IPR001005	SANT/Myb
IPR025756	Myb_CC_LHEQLE

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25812-RA	Carg25812-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 73..93
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 12..75 e-value: 9.1E-24 score: 85.2
None	No IPR available	PANTHER	PTHR31499	FAMILY NOT NAMED	coord: 2..226
None	No IPR available	PANTHER	PTHR31499:SF11	MYB FAMILY TRANSCRIPTION FACTOR PHL8	coord: 2..226
IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain	PFAM	PF14379	Myb_CC_LHEQLE	coord: 118..153 e-value: 1.1E-16 score: 60.2
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 18..68 e-value: 2.7E-6 score: 27.3
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 16..71 e-value: 6.3E-20 score: 69.2
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 15..72

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25812	MELO3C008548	Melon (DHL92) v3.5.1	carmeB1037
Carg25812	Cucsa.189550	Cucumber (Gy14) v1	carcgyB1186
Carg25812	CmaCh05G008620	Cucurbita maxima (Rimu)	carcmaB1477
Carg25812	CmoCh01G005130	Cucurbita moschata (Rifu)	carcmoB1433
Carg25812	CmoCh05G008680	Cucurbita moschata (Rifu)	carcmoB1434
Carg25812	Cp4.1LG11g07180	Cucurbita pepo (Zucchini)	carcpeB1486
Carg25812	Cla97C11G216060	Watermelon (97103) v2	carwmbB1126
Carg25812	Bhi06G000772	Wax gourd	carwgoB1255

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25812	Carg20424	Silver-seed gourd	carcarB581

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25812	Cucurbita pepo (Zucchini)	carcpeB1487
Carg25812	Melon (DHL92) v3.6.1	carmedB1051