Carg25802 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25802
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mediator of RNA polymerase II transcription subunit 4
Location	Cucurbita_argyrosperma_scaffold_289 : 152164 .. 153387 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAGCATCAAATTGTACAGTCCCCAGCAAGATTGGGCTTGACGAACCCTAATTCTCCTTCAATTCAAAACCCTACCCCACCGAAATTGCCCCCTTCTCAACAATCCCACCACCAAAATCCATCCAATCTTTCATCTCCGACTCCCTCCTCCACGCTTCTTCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCTTTAGCTTCCAAGCTCTTCGAAGTTTACCCCAATCGAGCCCTTTGGCTCACTGCATTTCGGGGCTCTCTTCCCACTTTTCTTAATTCTCAAACCCAGTCGGCTCCCTCTACGCCGCTTGATTCTACTCCGTCTACTTCAAAAGAAATTCTGTCACTGTTTAATGTTCTGCAGACTCAATTATTTGAAGCTGTTGCTGAGCTTCAGGAGATTCTTGATCTTCAAGACTCTAAGCAAAAAATTGCTTATGAAATGCGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAACTAAAGGATGCTGAACAGGTTCTTGATGTTTTGTTTGATGATTATGCTGATTATCAGGGTCATAAACGTGTTAAAACTAGCGATGATGTCGAAAACGAGTCATTGTGTTCGACTACTACTGTTGCATCCCAGTTGAAATTATCTGATATATTGTCATATGCTCATAAAATAAGCTATACTACTTTTGCACCACCTGAATTTGGGGCTGGACAAGCTCCGTTGCGCGGGGCGCTTCCCCCTGCCCCGCAAGAAGAGCAAATGCGTGCTTCCCAGTTGTATACTTTTGCTGATCTTGATGTTGGCTTGCCTAAATCAGTTGAAAGTACTGAGAAAACCATCGAGCCAATGATTGAGGCACCAGCTCCAGTGCCAACAGATGCCAATCCTTTAGCTCTGGCGGGTATTCAAGGGCTGCTTCCTCCAAATATCACTGTGCCATCTGGTTGGAAGCCTGGAATGCCTGTGGAATTACCTAGGGATTTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTGCCGCCATTGGACTCTCTTCCTGTTGCTAGAGTTGATGAGCCACAGTTGAGGCATAATGCTCTTCCAGGATTACACAGACCTCAAGAGCCGATTCAAGTTAGGCATGTTCAGTTGGATATTCTCGATCAAGACGATGATAGTAGCGATTATGCTAGTGAAGAAGGAAGCTCTGAAGATGATGATTGA

mRNA sequence

ATGCTTCAGCATCAAATTGTACAGTCCCCAGCAAGATTGGGCTTGACGAACCCTAATTCTCCTTCAATTCAAAACCCTACCCCACCGAAATTGCCCCCTTCTCAACAATCCCACCACCAAAATCCATCCAATCTTTCATCTCCGACTCCCTCCTCCACGCTTCTTCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCTTTAGCTTCCAAGCTCTTCGAAGTTTACCCCAATCGAGCCCTTTGGCTCACTGCATTTCGGGGCTCTCTTCCCACTTTTCTTAATTCTCAAACCCAGTCGGCTCCCTCTACGCCGCTTGATTCTACTCCGTCTACTTCAAAAGAAATTCTGTCACTGTTTAATGTTCTGCAGACTCAATTATTTGAAGCTGTTGCTGAGCTTCAGGAGATTCTTGATCTTCAAGACTCTAAGCAAAAAATTGCTTATGAAATGCGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAACTAAAGGATGCTGAACAGGTTCTTGATGTTTTGTTTGATGATTATGCTGATTATCAGGGTCATAAACGTGTTAAAACTAGCGATGATGTCGAAAACGAGTCATTGTGTTCGACTACTACTGTTGCATCCCAGTTGAAATTATCTGATATATTGTCATATGCTCATAAAATAAGCTATACTACTTTTGCACCACCTGAATTTGGGGCTGGACAAGCTCCGTTGCGCGGGGCGCTTCCCCCTGCCCCGCAAGAAGAGCAAATGCGTGCTTCCCAGTTGTATACTTTTGCTGATCTTGATGTTGGCTTGCCTAAATCAGTTGAAAGTACTGAGAAAACCATCGAGCCAATGATTGAGGCACCAGCTCCAGTGCCAACAGATGCCAATCCTTTAGCTCTGGCGGGTATTCAAGGGCTGCTTCCTCCAAATATCACTGTGCCATCTGGTTGGAAGCCTGGAATGCCTGTGGAATTACCTAGGGATTTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTGCCGCCATTGGACTCTCTTCCTGTTGCTAGAGTTGATGAGCCACAGTTGAGGCATAATGCTCTTCCAGGATTACACAGACCTCAAGAGCCGATTCAAGTTAGGCATGTTCAGTTGGATATTCTCGATCAAGACGATGATAGTAGCGATTATGCTAGTGAAGAAGGAAGCTCTGAAGATGATGATTGA

Coding sequence (CDS)

ATGCTTCAGCATCAAATTGTACAGTCCCCAGCAAGATTGGGCTTGACGAACCCTAATTCTCCTTCAATTCAAAACCCTACCCCACCGAAATTGCCCCCTTCTCAACAATCCCACCACCAAAATCCATCCAATCTTTCATCTCCGACTCCCTCCTCCACGCTTCTTCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCTTTAGCTTCCAAGCTCTTCGAAGTTTACCCCAATCGAGCCCTTTGGCTCACTGCATTTCGGGGCTCTCTTCCCACTTTTCTTAATTCTCAAACCCAGTCGGCTCCCTCTACGCCGCTTGATTCTACTCCGTCTACTTCAAAAGAAATTCTGTCACTGTTTAATGTTCTGCAGACTCAATTATTTGAAGCTGTTGCTGAGCTTCAGGAGATTCTTGATCTTCAAGACTCTAAGCAAAAAATTGCTTATGAAATGCGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAACTAAAGGATGCTGAACAGGTTCTTGATGTTTTGTTTGATGATTATGCTGATTATCAGGGTCATAAACGTGTTAAAACTAGCGATGATGTCGAAAACGAGTCATTGTGTTCGACTACTACTGTTGCATCCCAGTTGAAATTATCTGATATATTGTCATATGCTCATAAAATAAGCTATACTACTTTTGCACCACCTGAATTTGGGGCTGGACAAGCTCCGTTGCGCGGGGCGCTTCCCCCTGCCCCGCAAGAAGAGCAAATGCGTGCTTCCCAGTTGTATACTTTTGCTGATCTTGATGTTGGCTTGCCTAAATCAGTTGAAAGTACTGAGAAAACCATCGAGCCAATGATTGAGGCACCAGCTCCAGTGCCAACAGATGCCAATCCTTTAGCTCTGGCGGGTATTCAAGGGCTGCTTCCTCCAAATATCACTGTGCCATCTGGTTGGAAGCCTGGAATGCCTGTGGAATTACCTAGGGATTTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTGCCGCCATTGGACTCTCTTCCTGTTGCTAGAGTTGATGAGCCACAGTTGAGGCATAATGCTCTTCCAGGATTACACAGACCTCAAGAGCCGATTCAAGTTAGGCATGTTCAGTTGGATATTCTCGATCAAGACGATGATAGTAGCGATTATGCTAGTGAAGAAGGAAGCTCTGAAGATGATGATTGA

Protein sequence

MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPLALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD

Homology

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BLAST of Carg25802 vs. NCBI nr
Match: XP_022963248.1 (mediator of RNA polymerase II transcription subunit 4 [Cucurbita moschata])

HSP 1 Score: 743.4 bits (1918), Expect = 4.0e-211
Identity = 407/407 (100.00%), Postives = 407/407 (100.00%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300
           QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300

Query: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPXXXXXXXXXXXXXXLDSLPVARVDEP 360
           ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPXXXXXXXXXXXXXXLDSLPVARVDEP
Sbjct: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPXXXXXXXXXXXXXXLDSLPVARVDEP 360

Query: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD
Sbjct: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of Carg25802 vs. NCBI nr
Match: XP_022972715.1 (mediator of RNA polymerase II transcription subunit 4 [Cucurbita maxima])

HSP 1 Score: 733.0 bits (1891), Expect = 5.4e-208
Identity = 402/407 (98.77%), Postives = 404/407 (99.26%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPS QNPTPPKLPPSQQSHHQ  SNLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSFQNPTPPKLPPSQQSHHQYQSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQGHKRVKT+DDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTNDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300
           QAPLRGALPPAPQEEQMRASQLY+FADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYSFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300

Query: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPXXXXXXXXXXXXXXLDSLPVARVDEP 360
           ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPXXXXXXXXXXXXXXLDSLPVARVDEP
Sbjct: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPXXXXXXXXXXXXXXLDSLPVARVDEP 360

Query: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD
Sbjct: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of Carg25802 vs. NCBI nr
Match: XP_023518528.1 (mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 673.3 bits (1736), Expect = 5.1e-190
Identity = 377/407 (92.63%), Postives = 380/407 (93.37%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQ                        
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
             RAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK
Sbjct: 61  XXRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQGHKRVKT+DDVENESLCS+TTVASQLKLSDILSYAHKISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTTDDVENESLCSSTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300
           QAPLRGALPPAPQEEQMRASQLY+FADLDVGLPKSVESTEKTIEPMIE PAPVPTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYSFADLDVGLPKSVESTEKTIEPMIEPPAPVPTDANPL 300

Query: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPXXXXXXXXXXXXXXLDSLPVARVDEP 360
           ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPXXXXXXXXXXXXXXLDSLPVARVDEP
Sbjct: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPXXXXXXXXXXXXXXLDSLPVARVDEP 360

Query: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD
Sbjct: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of Carg25802 vs. NCBI nr
Match: XP_022143910.1 (mediator of RNA polymerase II transcription subunit 4 [Momordica charantia])

HSP 1 Score: 642.1 bits (1655), Expect = 1.3e-180
Identity = 365/409 (89.24%), Postives = 377/409 (92.18%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQN         SSTLLPLLPP
Sbjct: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQXXXXXXXXSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
           LPRAQALLLQMA+LASKLFEV PNR+LWLTAFRGSLPTFLNSQTQS+PSTPLD+TPSTSK
Sbjct: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADY+  +RVKT DDVEN+SLCS TTVASQLKLSDILSYAH+ISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYRRPQRVKTKDDVENDSLCS-TTVASQLKLSDILSYAHRISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300
           QAPLRGALPPAPQEEQMRASQLY FADLDVGLPK+VESTEKTIEPMIE PAPVPTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPL 300

Query: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPXXXXXXXXXXXXXXLDSLPVARVDE 360
           A LA IQGLLPPNITVPSGWKPGMPVELPRDLPMPXXXXXXXXXXXXXX       RVDE
Sbjct: 301 ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPXXXXXXXXXXXXXXXXXXXXXRVDE 360

Query: 361 P-QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           P QLR NALPGLH+P EPIQVR VQLDILDQDDDSSDY S+EGSSEDDD
Sbjct: 361 PQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 408

[Close]

BLAST of Carg25802 vs. NCBI nr
Match: XP_008449288.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo])

HSP 1 Score: 577.8 bits (1488), Expect = 2.9e-161
Identity = 337/408 (82.60%), Postives = 351/408 (86.03%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTP                                
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
              AQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL SQTQS+PST LDSTPS+SK
Sbjct: 61  XXXAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQ  +RVKT    ENESLCS TTVASQL+LSDILSYAH+ISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCS-TTVASQLRLSDILSYAHRISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300
           QAPLRGALPPAPQ+EQMRASQLY FA+LDVGLPK+VESTEKTIEPMIE PAPV  DANPL
Sbjct: 241 QAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPL 300

Query: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPXXXXXXXXXXXXXXLDSLPVARVDE 360
           + +A IQGLLPPNITVPSGWKPGMPVELP DLPMPXXXXXXXXXXXXXX DSLPV RVDE
Sbjct: 301 SNMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPXXXXXXXXXXXXXXXDSLPVTRVDE 360

Query: 361 PQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           PQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+EGSSEDDD
Sbjct: 361 PQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of Carg25802 vs. TAIR10
Match: AT5G02850.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 378.3 bits (970), Expect = 6.2e-105
Identity = 240/413 (58.11%), Postives = 280/413 (67.80%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPK----------------------LPPSQQSH 60
           MLQHQIVQSPARLGLT P SPS+QNPTP +                              
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  HQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPT 120
                                 LPRAQALL QMA L SKLF+V PNRA+WL+AFRGSLP+
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLNSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMR 180
           FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A E++
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVK---TSDDVENESLCSTTTVASQL 240
           +KD++L AFANKLKDAE+VLD+L DDY+DY+  KR K                       
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 KLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKS 300
           KL DIL+YAHKISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYTFADLD+GLPK+
Sbjct: 241 KLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPKT 300

Query: 301 VESTEKTIEPMIEAPAPVPTDANPLALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPX 360
           VE+ EK +E +IE P P       + ++ I  LLPPNI VPSGWKPGMPVELPRDLP+PX
Sbjct: 301 VENMEKKVEALIEPPPP----PEAMDISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLPX 360

Query: 361 XXXXXXXXXXXXXLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILD 389
           XXXXXXXXXXXXXL+S+   R ++ Q       GLHRP + IQVR VQLDIL+
Sbjct: 361 XXXXXXXXXXXXXLESIAAPRAEDHQ-HMRPSQGLHRPPDVIQVRAVQLDILE 408

[Close]

BLAST of Carg25802 vs. Swiss-Prot
Match: sp|Q9LZ00|MED4_ARATH (Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX=3702 GN=MED4 PE=1 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 1.1e-103
Identity = 240/413 (58.11%), Postives = 280/413 (67.80%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPK----------------------LPPSQQSH 60
           MLQHQIVQSPARLGLT P SPS+QNPTP +                              
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  HQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPT 120
                                 LPRAQALL QMA L SKLF+V PNRA+WL+AFRGSLP+
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLNSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMR 180
           FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A E++
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVK---TSDDVENESLCSTTTVASQL 240
           +KD++L AFANKLKDAE+VLD+L DDY+DY+  KR K                       
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 KLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKS 300
           KL DIL+YAHKISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYTFADLD+GLPK+
Sbjct: 241 KLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPKT 300

Query: 301 VESTEKTIEPMIEAPAPVPTDANPLALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPX 360
           VE+ EK +E +IE P P       + ++ I  LLPPNI VPSGWKPGMPVELPRDLP+PX
Sbjct: 301 VENMEKKVEALIEPPPP----PEAMDISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLPX 360

Query: 361 XXXXXXXXXXXXXLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILD 389
           XXXXXXXXXXXXXL+S+   R ++ Q       GLHRP + IQVR VQLDIL+
Sbjct: 361 XXXXXXXXXXXXXLESIAAPRAEDHQ-HMRPSQGLHRPPDVIQVRAVQLDILE 408

[Close]

BLAST of Carg25802 vs. Swiss-Prot
Match: sp|Q54D00|MED4_DICDI (Putative mediator of RNA polymerase II transcription subunit 4 OS=Dictyostelium discoideum OX=44689 GN=med4 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 5.3e-05
Identity = 61/186 (32.80%), Postives = 77/186 (41.40%), Query Frame = 0


Query: 100 LNSQTQSAPSTPLD--STPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEM 159
           LNSQ       P+D  S  +T   +L L N     L +     Q  L   +  QKI  E+
Sbjct: 44  LNSQQLQQIQLPIDQISNNATPNMVLQLMN----HLIDVDKIYQNTLKKLEKHQKIQKEI 103

Query: 160 -------RAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDVENESLCS--- 219
                    KD  +   A  LKD E  L+       D         SD + NE L     
Sbjct: 104 TXXXXXXXXKDKLISTLALNLKDIESFLENELSQ--DNVNINNGNASDGIVNEVLIDLKQ 163

Query: 220 -------TTTVASQLKLSDILSYAHKISYTTFAPPEFG-AGQAPLRGAL-PPAPQEEQMR 265
                     V  ++   D++SYAHKIS TT AP  FG    APL     PPAPQ+E MR
Sbjct: 164 PDDAASMDNIVNREVSPEDLISYAHKISGTTSAP--FGYQPNAPLASLFKPPAPQDEMMR 221

[Close]

BLAST of Carg25802 vs. TrEMBL
Match: tr|A0A1S3BLP6|A0A1S3BLP6_CUCME (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN=LOC103491209 PE=3 SV=1)

HSP 1 Score: 577.8 bits (1488), Expect = 1.9e-161
Identity = 337/408 (82.60%), Postives = 351/408 (86.03%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTP                                
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
              AQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL SQTQS+PST LDSTPS+SK
Sbjct: 61  XXXAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQ  +RVKT    ENESLCS TTVASQL+LSDILSYAH+ISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCS-TTVASQLRLSDILSYAHRISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300
           QAPLRGALPPAPQ+EQMRASQLY FA+LDVGLPK+VESTEKTIEPMIE PAPV  DANPL
Sbjct: 241 QAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPL 300

Query: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPXXXXXXXXXXXXXXLDSLPVARVDE 360
           + +A IQGLLPPNITVPSGWKPGMPVELP DLPMPXXXXXXXXXXXXXX DSLPV RVDE
Sbjct: 301 SNMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPXXXXXXXXXXXXXXXDSLPVTRVDE 360

Query: 361 PQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           PQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+EGSSEDDD
Sbjct: 361 PQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of Carg25802 vs. TrEMBL
Match: tr|A0A0A0KXB7|A0A0A0KXB7_CUCSA (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis sativus OX=3659 GN=MED4 PE=3 SV=1)

HSP 1 Score: 574.7 bits (1480), Expect = 1.6e-160
Identity = 336/407 (82.56%), Postives = 349/407 (85.75%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTP                                
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
              AQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL SQTQS+PST LDSTPS+SK
Sbjct: 61  XXXAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTLLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKEAEQVLDV 180

Query: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQ  +R KT  D ENESLCS TTVASQL+LSDILSYAH+ISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQRPRRDKTEGDAENESLCS-TTVASQLRLSDILSYAHRISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300
           QAPLRGALPPAPQ+EQMRASQLY FA+LDVGLPK+VESTEKTIEPMIE PAPV  DANP 
Sbjct: 241 QAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRPDANP- 300

Query: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPXXXXXXXXXXXXXXLDSLPVARVDEP 360
            LA IQGLLPPNITVPSGWKPGMPVELP DLPMPXXXXXXXXXXXXXX DSLPV RVDEP
Sbjct: 301 -LAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPXXXXXXXXXXXXXXXDSLPVTRVDEP 360

Query: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           QLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+EGSSEDDD
Sbjct: 361 QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 404

[Close]

BLAST of Carg25802 vs. TrEMBL
Match: tr|A0A1S2YKX7|A0A1S2YKX7_CICAR (Mediator of RNA polymerase II transcription subunit 4 OS=Cicer arietinum OX=3827 GN=LOC101496995 PE=3 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 1.6e-131
Identity = 286/412 (69.42%), Postives = 342/412 (83.01%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSI NP PPKLPPSQ  HHQ   +    TPS+ LL LLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSILNPNPPKLPPSQTHHHQ---DRQFATPSAALLSLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
           LPRAQALL QMASLASKLFEV PNR++W+TAFRGSLPTFL+SQ+Q+  S+ L+S+PST+K
Sbjct: 61  LPRAQALLFQMASLASKLFEVSPNRSVWVTAFRGSLPTFLSSQSQAHSSSSLESSPSTTK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EI+SLF  LQTQ+FEAV+ELQEI+DLQD+KQKI  E+R+KD AL AFANKLK AE+ LD+
Sbjct: 121 EIISLFTALQTQIFEAVSELQEIIDLQDAKQKIDREIRSKDLALLAFANKLKAAERELDI 180

Query: 181 LFDDYADY-QGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGA 240
           L DDY+DY +  KR K+ D  E++SL +T+TV+SQLKLSDILSYAH+ISYTTFAPPEFGA
Sbjct: 181 LVDDYSDYHRSTKRFKSGDGSEDDSL-TTSTVSSQLKLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANP 300
           G APLRGALPPAPQEEQMRASQLY FADLD+GLP++VE+ EKT+E +IE P   P D NP
Sbjct: 241 GTAPLRGALPPAPQEEQMRASQLYNFADLDIGLPRAVETKEKTVEAIIEPPPIQPVDTNP 300

Query: 301 LA-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPM-PXXXXXXXXXXXXXXLDSLPVARV 360
           L+ L+ IQGLLPPN +VP GWKPGMPV+LP D+P+  XXXXXXXXXXXXXX+DSL V+R 
Sbjct: 301 LSNLSAIQGLLPPNFSVPPGWKPGMPVQLPIDIPIXXXXXXXXXXXXXXXXMDSLSVSRF 360

Query: 361 DEPQLRHNALPGLHRPQEP--IQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           +EP+L     P + +P++P  IQV+HV LD+     DSSDY+S+E SS+D+D
Sbjct: 361 EEPKLP----PHIPQPKQPEVIQVQHVNLDL--GGSDSSDYSSDEASSDDED 402

[Close]

BLAST of Carg25802 vs. TrEMBL
Match: tr|A0A1S2YSU7|A0A1S2YSU7_CICAR (Mediator of RNA polymerase II transcription subunit 4 OS=Cicer arietinum OX=3827 GN=LOC101493894 PE=3 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 2.1e-131
Identity = 285/412 (69.17%), Postives = 342/412 (83.01%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSI NP PPKLPPSQ  HHQ   +  S TPS+ LL LLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSILNPNPPKLPPSQTHHHQ---DRQSATPSAALLSLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
           LPRAQ+LL QM+SLASKLFEV PNR++W+TAFRGSLPTFL+SQ+QS  S+ L+S+PST+K
Sbjct: 61  LPRAQSLLFQMSSLASKLFEVSPNRSVWVTAFRGSLPTFLSSQSQSHSSSSLESSPSTTK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EI+SLF  LQTQ+FEAV+ELQEI+DL+D+KQ+I  E+R+KD AL AFANKLKDAE+VLD+
Sbjct: 121 EIISLFTALQTQIFEAVSELQEIIDLRDAKQRIDREIRSKDLALLAFANKLKDAERVLDI 180

Query: 181 LFDDYADY-QGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGA 240
           L DDY+DY +  KR K+ D  E++SL +T+TV+SQLKLSDILSYAH+ISYTTFAPPEFGA
Sbjct: 181 LVDDYSDYHRSTKRFKSGDGSEDDSL-TTSTVSSQLKLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANP 300
           G APLRGALPPAPQEEQMRASQLY FADLD+GLP++VE+ EKT+E +IE P   P D NP
Sbjct: 241 GTAPLRGALPPAPQEEQMRASQLYNFADLDIGLPRAVETKEKTVEAIIEPPPVHPVDTNP 300

Query: 301 LA-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPM-PXXXXXXXXXXXXXXLDSLPVARV 360
           L+ L+ IQGLLPPN +VP GWKPGMPV+LP D+P+  XXXXXXXXXXXXXX   L V R 
Sbjct: 301 LSNLSAIQGLLPPNFSVPPGWKPGMPVQLPIDIPIXXXXXXXXXXXXXXXXXXXLQVPRF 360

Query: 361 DEPQLRHNALPGLHRPQEP--IQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           +EP+L    LP + +P++P  IQV+HV LD+     DSSDY+S+E SS+D+D
Sbjct: 361 EEPKL----LPHIPQPKQPEVIQVQHVNLDL--GGSDSSDYSSDEASSDDED 402

[Close]

BLAST of Carg25802 vs. TrEMBL
Match: tr|A0A2R4IRS3|A0A2R4IRS3_9MYRT (Mediator of RNA polymerase II transcription subunit 4 OS=Lagerstroemia indica OX=141186 GN=MED4 PE=2 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 1.5e-129
Identity = 285/412 (69.17%), Postives = 335/412 (81.31%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPT---PPKLPPSQQSHHQ-NPSNLSSPTPSSTLLP 60
           MLQHQI QSPARLGLT+PNSPS+Q  +   PPK   SQQ   Q +P+  ++P+ SS LLP
Sbjct: 1   MLQHQIAQSPARLGLTSPNSPSLQTASPQPPPKFSSSQQPQLQPHPNLATAPSTSSALLP 60

Query: 61  LLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTP 120
           LLPPLPRAQ+LLLQMASLA+KLFEV PNR+ WLT+FRG  PTFL SQ+Q+ P    D + 
Sbjct: 61  LLPPLPRAQSLLLQMASLATKLFEVSPNRSFWLTSFRGVFPTFLPSQSQTLP----DQSS 120

Query: 121 STSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQ 180
           S++KE+LSLF  LQTQLFEAVAELQEILDLQD+K K++ E+R+ DA+L +FA+KLK+AE+
Sbjct: 121 SSTKEVLSLFTSLQTQLFEAVAELQEILDLQDAKHKVSREVRSMDASLLSFAHKLKEAER 180

Query: 181 VLDVLFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPE 240
           VLDVL DDY+DY+  KR K S+D E E   S TT+AS+L LSDI+SYAH+ISYTTFAPPE
Sbjct: 181 VLDVLVDDYSDYRCPKRSK-SEDAEEEDESSFTTMASRLNLSDIISYAHRISYTTFAPPE 240

Query: 241 FGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTD 300
           FGAGQAPLRGALPPAPQEEQMRASQLY FADLDVGLPK+VE+ EKTIEP+IE P  VP  
Sbjct: 241 FGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKTVETKEKTIEPIIE-PTLVPDT 300

Query: 301 ANPLA-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPXXXXXXXXXXXXXXLDSLPVA 360
            NPLA LA IQGLLPPNITVPSGWKPGMPVELP +LP+ XXXXXXXXXXXXXX       
Sbjct: 301 NNPLANLAAIQGLLPPNITVPSGWKPGMPVELPTNLPVXXXXXXXXXXXXXXXXXXXAAP 360

Query: 361 RVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           R++EPQ+R  A  G+H+  E IQVRHV L++ D  DDSSDY+S+EGSSE+DD
Sbjct: 361 RIEEPQIRPVAPQGMHKEPEIIQVRHVDLELPDNFDDSSDYSSDEGSSEEDD 406

The following BLAST results are available for this feature:

BLAST of Carg25802 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963248.1	4.0e-211	100.00	mediator of RNA polymerase II transcription subunit 4 [Cucurbita moschata]	[more]
XP_022972715.1	5.4e-208	98.77	mediator of RNA polymerase II transcription subunit 4 [Cucurbita maxima]	[more]
XP_023518528.1	5.1e-190	92.63	mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pep...	[more]
XP_022143910.1	1.3e-180	89.24	mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]	[more]
XP_008449288.1	2.9e-161	82.60	PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo]	[more]

BLAST of Carg25802 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G02850.1	6.2e-105	58.11	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of Carg25802 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LZ00\|MED4_ARATH	1.1e-103	58.11	Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX...	[more]
sp\|Q54D00\|MED4_DICDI	5.3e-05	32.80	Putative mediator of RNA polymerase II transcription subunit 4 OS=Dictyostelium ...	[more]

BLAST of Carg25802 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BLP6\|A0A1S3BLP6_CUCME	1.9e-161	82.60	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0KXB7\|A0A0A0KXB7_CUCSA	1.6e-160	82.56	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis sativus OX=3659...	[more]
tr\|A0A1S2YKX7\|A0A1S2YKX7_CICAR	1.6e-131	69.42	Mediator of RNA polymerase II transcription subunit 4 OS=Cicer arietinum OX=3827...	[more]
tr\|A0A1S2YSU7\|A0A1S2YSU7_CICAR	2.1e-131	69.17	Mediator of RNA polymerase II transcription subunit 4 OS=Cicer arietinum OX=3827...	[more]
tr\|A0A2R4IRS3\|A0A2R4IRS3_9MYRT	1.5e-129	69.17	Mediator of RNA polymerase II transcription subunit 4 OS=Lagerstroemia indica OX...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0003712	transcription cofactor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **INTERPRO**
Term	Definition
IPR019258	Mediator_Med4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003712	transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25802-RA	Carg25802-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019258	Mediator complex, subunit Med4	PFAM	PF10018	Med4	coord: 129..266 e-value: 2.3E-7 score: 30.6
IPR019258	Mediator complex, subunit Med4	PANTHER	PTHR13208	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4	coord: 26..407
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 389..407
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 366..407
None	No IPR available	PANTHER	PTHR13208:SF4	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4	coord: 26..407

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25802	Cla018266	Watermelon (97103) v1	carwmB0415
Carg25802	Csa4G292980	Cucumber (Chinese Long) v2	carcuB0449
Carg25802	MELO3C014263	Melon (DHL92) v3.5.1	carmeB0426
Carg25802	ClCG04G008790	Watermelon (Charleston Gray)	carwcgB0411
Carg25802	CSPI04G14010	Wild cucumber (PI 183967)	carcpiB0454
Carg25802	Cucsa.065660	Cucumber (Gy14) v1	carcgyB0484
Carg25802	CmaCh07G009410	Cucurbita maxima (Rimu)	carcmaB0582
Carg25802	CmoCh07G009890	Cucurbita moschata (Rifu)	carcmoB0566
Carg25802	Lsi01G013680	Bottle gourd (USVL1VR-Ls)	carlsiB380
Carg25802	CsGy4G013580	Cucumber (Gy14) v2	carcgybB0425
Carg25802	MELO3C014263.2	Melon (DHL92) v3.6.1	carmedB0428
Carg25802	CsaV3_4G024350	Cucumber (Chinese Long) v3	carcucB0450
Carg25802	Cla97C04G075470	Watermelon (97103) v2	carwmbB0442
Carg25802	Bhi03G001286	Wax gourd	carwgoB0504

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25802	Cucurbita pepo (Zucchini)	carcpeB0588
Carg25802	Melon (DHL92) v3.5.1	carmeB0427
Carg25802	Melon (DHL92) v3.6.1	carmedB0429