Carg25801 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25801
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	60S ribosomal protein L4-like
Location	Cucurbita_argyrosperma_scaffold_289 : 148789 .. 151147 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTTGCCGCCGCTCGCCCTCTTGTTTCGGTTCAGTCCCTTGAAGGGGACATGGCCACTGATGCGGCACCCGGCGTCCCGCTGCCCGACGTGATGAGGGCTTCAATTCGGCCGGATATTGTTAGCTTTGTTCATTCCAATATCTCAAAGAACAGCCGCCAGCCCTACGCCGTCAGCAAGCGCGCCGGCCACCAAACCTCCGCTGAGTCCTGGGGTACCGGACGTGCTGTGTCCCGTATTCCTCGTGTCCCTGGCGGTGGTACTCACCGTGCTGGTCAGGGTGCTTTTGGAAACATGTGTCGTGGTGGTCGAATGTTCGCTCCAACTAAGATCTGGCGACGTTGGCACCGAAAGATCAATGTGAATCAGAAGAGGTATGCTGTTGTTTCGGCTATTGCGGCCTCGGCTGTTCCATCGTTGGTTCTTGCTCGCGGCCATCGTATCGAGTCTGTTCCTGAATTGCCTCTTGTTGTGAGCGACTCGGCCGAAGGCGTTGAGAAGACCTCCGCTGCAATCAAGGTTCTCAAACAGGTTGGTGCTTTTCCCGATGCTGAGAAGGCCAAGGATAGCCATGCGATCCGTCCTGGTAAGGGTAAAATGAGGAACCGTCGCTACATTTCTCGCAAGGGTCCGTTGATTGTTTACGGAACTGAGGGCGCTAAACTTGTTAAGGCCTTCCGTAACATTCCGGGAGTTGAGATTGCCAATGTTGAGAGGCTTAATTTGTTGAAGCTCGCTCCTGGTGGTCACCTTGGAAGGTTTGTGATCTGGACCAAGTCTGCTTTTGAGAAGCTTGATTCTATTTATGGATCTTTCGAGAAGCCTTCAGAGAAGAAAAAGGGTTATGTCCTCCCAAGGTCTAAGATGGTGAATGCAGATTTGTCAAGGATTATTAACTCTGATGAAGTCCAATCTGTGGTGAAGCCGATTAAGAAGGCTGTTAAGAGAGCTCCATTGAAGAAGAACCCATTGAAGAACTTGAACGCCATGCTCAAGCTTAACCCGTATGCCAAGACTGCTAGAAGAATGGCTCTTTTGGCGGAGGAGCAACGTGTTAAGGCTAAAAAGGAGAAACTCGACAAGAAGAGGAATTTGACTACAAAGGTACATCATTCATGTTCTTAGTGATTATCTTCATTCTTTTAGAAATTAAGTTGCGCATATCTCCATAGCAGATTGATTGGATTGGCGATTTCCTTCAAATACTTATTAAGTTGATATTATTTTTTATGTGGGTTTGGTTTCGCTCTTAAGATTGATGGCATAATTAATTTAATTTTATGTTACATACAGTGGAATCTTTGTATCTGGCTCATAGTTATTGGGTCTGCTTAATGACATGCTTTTATGAAAATTATTGCTCTATGTTCAATCATGTCCTGTTGTCATTTAACTTCGATATGCATCGTTCTTGAGGACTACTGTTTACTCTCATCACTTATACTTCATAATTGATTAGATTGGTCGAATTCTTAAGTACACTTTTTTTATGTGCTCGCCTTATCCATCCTTGTAAGTTCAAGTAATCTCTTGTTGATTTGGTAGAGAACTAATTTATTTTATAGATTTCTTTGTTTCATCATGATGACAAGATGTTCGTTTTATCCTTCCAAAAGTTTGTCCTTTTTGGTTTCTCATTTTAAGTTGAATCATCGATACTCCGTGACCAGAAGTTGTTTTATACGGTGGCACAATCATATGATCATATCATCTGCATTTTGTGGAACCAGACTTTGTTGTCTCAGTACACATCCTATTCATGGTGTTGACTTTCTTCTCTCCATTTTTTGTACATGATCCTCACAGGAGGAGGCTACTTCAATCAAAGCTGCAGGCAAGGCATGGTATCAGACGATGATCTCCGACAGTGATTACACCGAGTTCGACAACTTCTCGAAATGGCTCGGCGTCTCTCAGTAATTTCGCTTTTCTTTATTCAAAATCTCATAGACCTCATTACTTCGGTAAATCTAGTTTTGTCAAGGAGTTGATATTTCTTGCTTGGATTGTTGTTGCGTTTAGAGTTTAGGAGAACAATGAGTGAAGTAACATGATAATTTACCTTTAGCCTTTTGCTCTCCCATTTTTATCTACATTCCTCCTCTTTGTTCATCTACAAGGAGTGTGTAGTAGTTGCCTTTTATCATGTCACCATGGTGAGATTACATCCACTGTGATATGCAATTCTTCTGCTTTTAATGGTCATTGTTCTTGATGCCCTTTTATTCAATGCCATATCATTTTTCCCCATTGGCTTTGCCTTAGAGCCTTGGAGTGATTAGTATTATGCAATTTCTAAAATTAAAATTGTTGGGGATTTGTTCTCCATCCTTGATTTTCAAATTTTATGAAAAAT

mRNA sequence

ATGGCTGTTGCCGCCGCTCGCCCTCTTGTTTCGGTTCAGTCCCTTGAAGGGGACATGGCCACTGATGCGGCACCCGGCGTCCCGCTGCCCGACGTGATGAGGGCTTCAATTCGGCCGGATATTGTTAGCTTTGTTCATTCCAATATCTCAAAGAACAGCCGCCAGCCCTACGCCGTCAGCAAGCGCGCCGGCCACCAAACCTCCGCTGAGTCCTGGGGTACCGGACGTGCTGTGTCCCGTATTCCTCGTGTCCCTGGCGGTGGTACTCACCGTGCTGGTCAGGGTGCTTTTGGAAACATGTGTCGTGGTGGTCGAATGTTCGCTCCAACTAAGATCTGGCGACGTTGGCACCGAAAGATCAATGTGAATCAGAAGAGGTATGCTGTTGTTTCGGCTATTGCGGCCTCGGCTGTTCCATCGTTGGTTCTTGCTCGCGGCCATCGTATCGAGTCTGTTCCTGAATTGCCTCTTGTTGTGAGCGACTCGGCCGAAGGCGTTGAGAAGACCTCCGCTGCAATCAAGGTTCTCAAACAGGTTGGTGCTTTTCCCGATGCTGAGAAGGCCAAGGATAGCCATGCGATCCGTCCTGGTAAGGGTAAAATGAGGAACCGTCGCTACATTTCTCGCAAGGGTCCGTTGATTGTTTACGGAACTGAGGGCGCTAAACTTGTTAAGGCCTTCCGTAACATTCCGGGAGTTGAGATTGCCAATGTTGAGAGGCTTAATTTGTTGAAGCTCGCTCCTGGTGGTCACCTTGGAAGGTTTGTGATCTGGACCAAGTCTGCTTTTGAGAAGCTTGATTCTATTTATGGATCTTTCGAGAAGCCTTCAGAGAAGAAAAAGGGTTATGTCCTCCCAAGGTCTAAGATGGTGAATGCAGATTTGTCAAGGATTATTAACTCTGATGAAGTCCAATCTGTGGTGAAGCCGATTAAGAAGGCTGTTAAGAGAGCTCCATTGAAGAAGAACCCATTGAAGAACTTGAACGCCATGCTCAAGCTTAACCCGAGGAGGCTACTTCAATCAAAGCTGCAGGCAAGGCATGGTATCAGACGATGATCTCCGACAGTGATTACACCGAGTTCGACAACTTCTCGAAATGGCTCGGCGTCTCTCAGTAATTTCGCTTTTCTTTATTCAAAATCTCATAGACCTCATTACTTCGGTAAATCTAGTTTTGTCAAGGAGTTGATATTTCTTGCTTGGATTGTTGTTGCGTTTAGAGTTTAGGAGAACAATGAGTGAAGTAACATGATAATTTACCTTTAGCCTTTTGCTCTCCCATTTTTATCTACATTCCTCCTCTTTGTTCATCTACAAGGAGTGTGTAGTAGTTGCCTTTTATCATGTCACCATGGTGAGATTACATCCACTGTGATATGCAATTCTTCTGCTTTTAATGGTCATTGTTCTTGATGCCCTTTTATTCAATGCCATATCATTTTTCCCCATTGGCTTTGCCTTAGAGCCTTGGAGTGATTAGTATTATGCAATTTCTAAAATTAAAATTGTTGGGGATTTGTTCTCCATCCTTGATTTTCAAATTTTATGAAAAAT

Coding sequence (CDS)

ATGGCTGTTGCCGCCGCTCGCCCTCTTGTTTCGGTTCAGTCCCTTGAAGGGGACATGGCCACTGATGCGGCACCCGGCGTCCCGCTGCCCGACGTGATGAGGGCTTCAATTCGGCCGGATATTGTTAGCTTTGTTCATTCCAATATCTCAAAGAACAGCCGCCAGCCCTACGCCGTCAGCAAGCGCGCCGGCCACCAAACCTCCGCTGAGTCCTGGGGTACCGGACGTGCTGTGTCCCGTATTCCTCGTGTCCCTGGCGGTGGTACTCACCGTGCTGGTCAGGGTGCTTTTGGAAACATGTGTCGTGGTGGTCGAATGTTCGCTCCAACTAAGATCTGGCGACGTTGGCACCGAAAGATCAATGTGAATCAGAAGAGGTATGCTGTTGTTTCGGCTATTGCGGCCTCGGCTGTTCCATCGTTGGTTCTTGCTCGCGGCCATCGTATCGAGTCTGTTCCTGAATTGCCTCTTGTTGTGAGCGACTCGGCCGAAGGCGTTGAGAAGACCTCCGCTGCAATCAAGGTTCTCAAACAGGTTGGTGCTTTTCCCGATGCTGAGAAGGCCAAGGATAGCCATGCGATCCGTCCTGGTAAGGGTAAAATGAGGAACCGTCGCTACATTTCTCGCAAGGGTCCGTTGATTGTTTACGGAACTGAGGGCGCTAAACTTGTTAAGGCCTTCCGTAACATTCCGGGAGTTGAGATTGCCAATGTTGAGAGGCTTAATTTGTTGAAGCTCGCTCCTGGTGGTCACCTTGGAAGGTTTGTGATCTGGACCAAGTCTGCTTTTGAGAAGCTTGATTCTATTTATGGATCTTTCGAGAAGCCTTCAGAGAAGAAAAAGGGTTATGTCCTCCCAAGGTCTAAGATGGTGAATGCAGATTTGTCAAGGATTATTAACTCTGATGAAGTCCAATCTGTGGTGAAGCCGATTAAGAAGGCTGTTAAGAGAGCTCCATTGAAGAAGAACCCATTGAAGAACTTGAACGCCATGCTCAAGCTTAACCCGAGGAGGCTACTTCAATCAAAGCTGCAGGCAAGGCATGGTATCAGACGATGA

Protein sequence

MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVGAFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINSDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNPRRLLQSKLQARHGIRR

Homology

[Close]

BLAST of Carg25801 vs. NCBI nr
Match: XP_022963036.1 (60S ribosomal protein L4 [Cucurbita moschata])

HSP 1 Score: 650.2 bits (1676), Expect = 4.0e-183
Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 0


Query: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVS 60
           MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVS
Sbjct: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVS 60

Query: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120
           KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI
Sbjct: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120

Query: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180
           NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG
Sbjct: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180

Query: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240
           AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER
Sbjct: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240

Query: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300
           LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN
Sbjct: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300

Query: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 337
           SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP
Sbjct: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 336

[Close]

BLAST of Carg25801 vs. NCBI nr
Match: XP_022972645.1 (60S ribosomal protein L4-like [Cucurbita maxima] >XP_023517997.1 60S ribosomal protein L4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 649.0 bits (1673), Expect = 8.9e-183
Identity = 335/336 (99.70%), Postives = 336/336 (100.00%), Query Frame = 0


Query: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVS 60
           MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVM+ASIRPDIVSFVHSNISKNSRQPYAVS
Sbjct: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVS 60

Query: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120
           KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI
Sbjct: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120

Query: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180
           NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG
Sbjct: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180

Query: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240
           AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER
Sbjct: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240

Query: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300
           LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN
Sbjct: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300

Query: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 337
           SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP
Sbjct: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 336

[Close]

BLAST of Carg25801 vs. NCBI nr
Match: XP_022925909.1 (60S ribosomal protein L4 [Cucurbita moschata] >XP_023544338.1 60S ribosomal protein L4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 636.0 bits (1639), Expect = 7.8e-179
Identity = 327/333 (98.20%), Postives = 330/333 (99.10%), Query Frame = 0


Query: 4   AAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVSKRA 63
           AAARPLVSVQSLEGDMATDA P VPLPDVM+ASIRPDIVSFVHSNISKNSRQPYAVSKRA
Sbjct: 3   AAARPLVSVQSLEGDMATDAVPTVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVSKRA 62

Query: 64  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 123
           GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN
Sbjct: 63  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 122

Query: 124 QKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVGAFP 183
           QKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAA+KVLKQVGAFP
Sbjct: 123 QKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAALKVLKQVGAFP 182

Query: 184 DAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNL 243
           DAEKAKDSH+IRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNL
Sbjct: 183 DAEKAKDSHSIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNL 242

Query: 244 LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINSDE 303
           LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINSDE
Sbjct: 243 LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINSDE 302

Query: 304 VQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 337
           VQSVVKPIKK VKRAPLKKNPLKNLNAMLKLNP
Sbjct: 303 VQSVVKPIKKEVKRAPLKKNPLKNLNAMLKLNP 335

[Close]

BLAST of Carg25801 vs. NCBI nr
Match: XP_008449286.1 (PREDICTED: 60S ribosomal protein L4-like [Cucumis melo])

HSP 1 Score: 632.1 bits (1629), Expect = 1.1e-177
Identity = 327/333 (98.20%), Postives = 328/333 (98.50%), Query Frame = 0


Query: 4   AAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVSKRA 63
           AAARPLVSVQSLEGDMATDAAP VPLPDVM+ASIRPDIVSFVHSNISKNSRQPYAVSKRA
Sbjct: 3   AAARPLVSVQSLEGDMATDAAPTVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVSKRA 62

Query: 64  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 123
           GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN
Sbjct: 63  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 122

Query: 124 QKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVGAFP 183
           QKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVGAFP
Sbjct: 123 QKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVGAFP 182

Query: 184 DAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNL 243
           DAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYG EGAKLVKAFRNIPGVEIANVERLNL
Sbjct: 183 DAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGAEGAKLVKAFRNIPGVEIANVERLNL 242

Query: 244 LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINSDE 303
           LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINSDE
Sbjct: 243 LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINSDE 302

Query: 304 VQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 337
           VQSVVKPIKK VKR  LKKNPLKNLNAMLKLNP
Sbjct: 303 VQSVVKPIKKNVKRPQLKKNPLKNLNAMLKLNP 335

[Close]

BLAST of Carg25801 vs. NCBI nr
Match: XP_022977811.1 (60S ribosomal protein L4 [Cucurbita maxima])

HSP 1 Score: 631.7 bits (1628), Expect = 1.5e-177
Identity = 323/333 (97.00%), Postives = 329/333 (98.80%), Query Frame = 0


Query: 4   AAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVSKRA 63
           AAARPLVS+QSL+GDMATDA P VPLPDVM+ASIRPDIVSFVHSNISKNSRQPYAVSKRA
Sbjct: 3   AAARPLVSIQSLDGDMATDAVPTVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVSKRA 62

Query: 64  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 123
           GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN
Sbjct: 63  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 122

Query: 124 QKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVGAFP 183
           QKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDS EGVEKTSAA+KVLKQVGAFP
Sbjct: 123 QKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSVEGVEKTSAALKVLKQVGAFP 182

Query: 184 DAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNL 243
           DAEKAKDSH+IRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNL
Sbjct: 183 DAEKAKDSHSIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNL 242

Query: 244 LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINSDE 303
           LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFE+PSEKKKGYVLPRSKMVNADLSRIINSDE
Sbjct: 243 LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFERPSEKKKGYVLPRSKMVNADLSRIINSDE 302

Query: 304 VQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 337
           VQSVVKPIKK VKRAPLKKNPLKNLNAMLKLNP
Sbjct: 303 VQSVVKPIKKEVKRAPLKKNPLKNLNAMLKLNP 335

[Close]

BLAST of Carg25801 vs. TAIR10
Match: AT3G09630.1 (Ribosomal protein L4/L1 family)

HSP 1 Score: 567.4 bits (1461), Expect = 6.2e-162
Identity = 282/336 (83.93%), Postives = 315/336 (93.75%), Query Frame = 0


Query: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVS 60
           MA AAARPLV++Q+L+GDM+TD +  V LPDVM A +RPDIV+FVH+ IS NSRQPYAVS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120
           K+AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++
Sbjct: 61  KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 120

Query: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180
           NVN KR+A+VSAIAA+AVP+LV+ARGH+IE+VPE+PLVVSDSAE VEKTSAAIKVLKQ+G
Sbjct: 121 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 180

Query: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240
           A+ DAEKAK+S  IRPGKGKMRNRRYISRKGPL+VYGTEG+K+VKAFRN+PGVE+ +VER
Sbjct: 181 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVER 240

Query: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300
           LNLLKLAPGGHLGRFVIWTKSAFEKL+SIYGSFEKPSEKKKGYVLPR+KMVNADL+RIIN
Sbjct: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIIN 300

Query: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 337
           SDE+QSVV PIKK  KRA LKKNPLKNLN MLKLNP
Sbjct: 301 SDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNP 336

[Close]

BLAST of Carg25801 vs. TAIR10
Match: AT5G02870.1 (Ribosomal protein L4/L1 family)

HSP 1 Score: 561.6 bits (1446), Expect = 3.4e-160
Identity = 281/336 (83.63%), Postives = 312/336 (92.86%), Query Frame = 0


Query: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVS 60
           +A AAARPLV+VQ L+GDM+TD +  V LPDVM A +RPDIV+FVH+ IS NSRQPYAVS
Sbjct: 2   VASAAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 61

Query: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120
           K+AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++
Sbjct: 62  KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 121

Query: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180
           NVN KR+A+VSAIAA+AVP+LV+ARGH+IE+VPE+PLVVSDSAE VEKTSAAIKVLKQ+G
Sbjct: 122 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 181

Query: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240
           A+ DAEKAK+S  IRPGKGKMRNRRYISRKGPL+V+GTEGAK+VKAFRN+PGVE+ +VER
Sbjct: 182 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVER 241

Query: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300
           LNLLKLAPGGHLGRFVIWTKSAFEKL+SIYGSFEKPSEKKKGYVLPR+KMVNADL+RIIN
Sbjct: 242 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIIN 301

Query: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 337
           SDEVQSVV PIK   KRA LKKNPLKNLN M KLNP
Sbjct: 302 SDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNP 337

[Close]

BLAST of Carg25801 vs. Swiss-Prot
Match: sp|Q9XF97|RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca OX=36596 GN=RPL4 PE=2 SV=1)

HSP 1 Score: 589.3 bits (1518), Expect = 2.7e-167
Identity = 299/335 (89.25%), Postives = 319/335 (95.22%), Query Frame = 0


Query: 2   AVAAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVSK 61
           A AAARPLV+VQSLEGDMATD    V LPDVM+ASIRPDIV+FVHSNISKNSRQPYAVSK
Sbjct: 4   AAAAARPLVTVQSLEGDMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSK 63

Query: 62  RAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKIN 121
           +AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKIN
Sbjct: 64  KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKIN 123

Query: 122 VNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVGA 181
           VNQKRYAVVSAIAASAVPSLVLARGH+IE+VPELPLVVSDS EGVE+TSAA+KVLKQ+GA
Sbjct: 124 VNQKRYAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVLKQIGA 183

Query: 182 FPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERL 241
           + DAEKAKDSH+IRPGKGKMRNRRYI+RKGPLIVYGTEGAKLVKAFRNIPG++I NVERL
Sbjct: 184 YSDAEKAKDSHSIRPGKGKMRNRRYINRKGPLIVYGTEGAKLVKAFRNIPGIDIINVERL 243

Query: 242 NLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINS 301
           NLLKLAPGGHLGRFV+WTKSAFEKLDSIYGSF+K SEKK GYVLPRSKMVNADL+RIINS
Sbjct: 244 NLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINS 303

Query: 302 DEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 337
           DEVQSVV PI++  KRAPLKKNPL+ LN MLKLNP
Sbjct: 304 DEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNP 338

[Close]

BLAST of Carg25801 vs. Swiss-Prot
Match: sp|Q9SF40|RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana OX=3702 GN=RPL4A PE=1 SV=1)

HSP 1 Score: 567.4 bits (1461), Expect = 1.1e-160
Identity = 282/336 (83.93%), Postives = 315/336 (93.75%), Query Frame = 0


Query: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVS 60
           MA AAARPLV++Q+L+GDM+TD +  V LPDVM A +RPDIV+FVH+ IS NSRQPYAVS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120
           K+AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++
Sbjct: 61  KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 120

Query: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180
           NVN KR+A+VSAIAA+AVP+LV+ARGH+IE+VPE+PLVVSDSAE VEKTSAAIKVLKQ+G
Sbjct: 121 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 180

Query: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240
           A+ DAEKAK+S  IRPGKGKMRNRRYISRKGPL+VYGTEG+K+VKAFRN+PGVE+ +VER
Sbjct: 181 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVER 240

Query: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300
           LNLLKLAPGGHLGRFVIWTKSAFEKL+SIYGSFEKPSEKKKGYVLPR+KMVNADL+RIIN
Sbjct: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIIN 300

Query: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 337
           SDE+QSVV PIKK  KRA LKKNPLKNLN MLKLNP
Sbjct: 301 SDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNP 336

[Close]

BLAST of Carg25801 vs. Swiss-Prot
Match: sp|P49691|RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana OX=3702 GN=RPL4D PE=1 SV=2)

HSP 1 Score: 561.6 bits (1446), Expect = 6.1e-159
Identity = 281/336 (83.63%), Postives = 312/336 (92.86%), Query Frame = 0


Query: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVS 60
           +A AAARPLV+VQ L+GDM+TD +  V LPDVM A +RPDIV+FVH+ IS NSRQPYAVS
Sbjct: 2   VASAAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 61

Query: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120
           K+AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++
Sbjct: 62  KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 121

Query: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180
           NVN KR+A+VSAIAA+AVP+LV+ARGH+IE+VPE+PLVVSDSAE VEKTSAAIKVLKQ+G
Sbjct: 122 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 181

Query: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240
           A+ DAEKAK+S  IRPGKGKMRNRRYISRKGPL+V+GTEGAK+VKAFRN+PGVE+ +VER
Sbjct: 182 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVER 241

Query: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300
           LNLLKLAPGGHLGRFVIWTKSAFEKL+SIYGSFEKPSEKKKGYVLPR+KMVNADL+RIIN
Sbjct: 242 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIIN 301

Query: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 337
           SDEVQSVV PIK   KRA LKKNPLKNLN M KLNP
Sbjct: 302 SDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNP 337

[Close]

BLAST of Carg25801 vs. Swiss-Prot
Match: sp|Q9D8E6|RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus OX=10090 GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 419.9 bits (1078), Expect = 2.9e-116
Identity = 208/334 (62.28%), Postives = 261/334 (78.14%), Query Frame = 0


Query: 3   VAAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVSKR 62
           +A ARPL+SV S +G+    +   V LP V +A IRPDIV+FVH+N+ KN+RQPYAVS+ 
Sbjct: 1   MACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSEL 60

Query: 63  AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINV 122
           AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N 
Sbjct: 61  AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNT 120

Query: 123 NQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVGAF 182
            QKRYA+ SA+AASA+P+LV+++GHRIE VPELPLVV D  EG +KT  A+++LK++ A+
Sbjct: 121 TQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVQLLKKLKAW 180

Query: 183 PDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLN 242
            D +K   S  +R GKGKMRNRR I R+GP I+Y  +   ++KAFRNIPG+ + NV +LN
Sbjct: 181 NDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLN 240

Query: 243 LLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINSD 302
           +LKLAPGGH+GRF IWT+SAF KLD +YG++ K +  K  Y LP  KM+N DLSRI+ S 
Sbjct: 241 ILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSP 300

Query: 303 EVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 337
           E+Q  ++  +K + R  LKKNPLKNL  MLKLNP
Sbjct: 301 EIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNP 330

[Close]

BLAST of Carg25801 vs. Swiss-Prot
Match: sp|P36578|RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens OX=9606 GN=RPL4 PE=1 SV=5)

HSP 1 Score: 419.5 bits (1077), Expect = 3.8e-116
Identity = 208/334 (62.28%), Postives = 260/334 (77.84%), Query Frame = 0


Query: 3   VAAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVSKR 62
           +A ARPL+SV S +G+    +   V LP V +A IRPDIV+FVH+N+ KN+RQPYAVS+ 
Sbjct: 1   MACARPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSEL 60

Query: 63  AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINV 122
           AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++N 
Sbjct: 61  AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNT 120

Query: 123 NQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVGAF 182
            QKRYA+ SA+AASA+P+LV+++GHRIE VPELPLVV D  EG +KT  A+ +LK++ A+
Sbjct: 121 TQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAW 180

Query: 183 PDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLN 242
            D +K   S  +R GKGKMRNRR I R+GP I+Y  +   ++KAFRNIPG+ + NV +LN
Sbjct: 181 NDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLN 240

Query: 243 LLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINSD 302
           +LKLAPGGH+GRF IWT+SAF KLD +YG++ K +  K  Y LP  KM+N DLSRI+ S 
Sbjct: 241 ILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSP 300

Query: 303 EVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 337
           E+Q  ++  +K + R  LKKNPLKNL  MLKLNP
Sbjct: 301 EIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNP 330

[Close]

BLAST of Carg25801 vs. TrEMBL
Match: tr|A0A1S3BL28|A0A1S3BL28_CUCME (60S ribosomal protein L4-like OS=Cucumis melo OX=3656 GN=LOC103491208 PE=4 SV=1)

HSP 1 Score: 632.1 bits (1629), Expect = 7.5e-178
Identity = 327/333 (98.20%), Postives = 328/333 (98.50%), Query Frame = 0


Query: 4   AAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVSKRA 63
           AAARPLVSVQSLEGDMATDAAP VPLPDVM+ASIRPDIVSFVHSNISKNSRQPYAVSKRA
Sbjct: 3   AAARPLVSVQSLEGDMATDAAPTVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVSKRA 62

Query: 64  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 123
           GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN
Sbjct: 63  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 122

Query: 124 QKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVGAFP 183
           QKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVGAFP
Sbjct: 123 QKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVGAFP 182

Query: 184 DAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNL 243
           DAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYG EGAKLVKAFRNIPGVEIANVERLNL
Sbjct: 183 DAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGAEGAKLVKAFRNIPGVEIANVERLNL 242

Query: 244 LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINSDE 303
           LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINSDE
Sbjct: 243 LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINSDE 302

Query: 304 VQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 337
           VQSVVKPIKK VKR  LKKNPLKNLNAMLKLNP
Sbjct: 303 VQSVVKPIKKNVKRPQLKKNPLKNLNAMLKLNP 335

[Close]

BLAST of Carg25801 vs. TrEMBL
Match: tr|A0A0A0L0Q4|A0A0A0L0Q4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G292970 PE=4 SV=1)

HSP 1 Score: 629.8 bits (1623), Expect = 3.7e-177
Identity = 326/333 (97.90%), Postives = 328/333 (98.50%), Query Frame = 0


Query: 4   AAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVSKRA 63
           AAARPLVSVQSLEGDMATDAAP VPLPDVM+ASIRPDIVSFVHSNISKNSRQPYAVSKRA
Sbjct: 3   AAARPLVSVQSLEGDMATDAAPTVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVSKRA 62

Query: 64  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 123
           GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN
Sbjct: 63  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 122

Query: 124 QKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVGAFP 183
           QKRYAVVSAIAASAVPSLVLARGHRIE+VPELPLVVSDSAEGVEKTSAAIKVLKQVGAFP
Sbjct: 123 QKRYAVVSAIAASAVPSLVLARGHRIETVPELPLVVSDSAEGVEKTSAAIKVLKQVGAFP 182

Query: 184 DAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNL 243
           DAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNL
Sbjct: 183 DAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNL 242

Query: 244 LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINSDE 303
           LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEK SEKKKGYVLPRSKMVNADLSRIINSDE
Sbjct: 243 LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKSSEKKKGYVLPRSKMVNADLSRIINSDE 302

Query: 304 VQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 337
           VQSVVKPIKK VKR  LKKNPLKNLNAMLKLNP
Sbjct: 303 VQSVVKPIKKNVKRPQLKKNPLKNLNAMLKLNP 335

[Close]

BLAST of Carg25801 vs. TrEMBL
Match: tr|A0A1S3B5N1|A0A1S3B5N1_CUCME (60S ribosomal protein L4 OS=Cucumis melo OX=3656 GN=LOC103486445 PE=4 SV=1)

HSP 1 Score: 618.6 bits (1594), Expect = 8.6e-174
Identity = 315/336 (93.75%), Postives = 328/336 (97.62%), Query Frame = 0


Query: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVS 60
           MA AAARPLV+VQ+LEGDMATD++P VPLPDVM+ASIRPDIVSFVHSNISKNSRQPYAVS
Sbjct: 1   MAAAAARPLVAVQTLEGDMATDSSPTVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVS 60

Query: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120
           KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI
Sbjct: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120

Query: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180
           NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLV+SDSAEG+EKTS+AIKVLKQVG
Sbjct: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVISDSAEGIEKTSSAIKVLKQVG 180

Query: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240
           AFPDAEKAKDSHAIR GKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPG++I NVER
Sbjct: 181 AFPDAEKAKDSHAIRTGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGIDIVNVER 240

Query: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300
           LNLLKLAPGGHLGRFVIWTK+AFEKLDSIYGSFEK SEKKKGYVLPR+KMVNADL+RIIN
Sbjct: 241 LNLLKLAPGGHLGRFVIWTKTAFEKLDSIYGSFEKSSEKKKGYVLPRAKMVNADLARIIN 300

Query: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 337
           SDEVQSVVKPIKK VKR  LKKNPLKNLNAMLKLNP
Sbjct: 301 SDEVQSVVKPIKKGVKRPSLKKNPLKNLNAMLKLNP 336

[Close]

BLAST of Carg25801 vs. TrEMBL
Match: tr|A0A0A0LDW3|A0A0A0LDW3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736750 PE=4 SV=1)

HSP 1 Score: 612.8 bits (1579), Expect = 4.7e-172
Identity = 312/333 (93.69%), Postives = 324/333 (97.30%), Query Frame = 0


Query: 4   AAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVSKRA 63
           AAARPLV+VQ LEGDMATD++P VPLPDVM+ASIRPDIVSFVHSNISKNSRQPYAVSKRA
Sbjct: 3   AAARPLVAVQVLEGDMATDSSPTVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVSKRA 62

Query: 64  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 123
           GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN
Sbjct: 63  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 122

Query: 124 QKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVGAFP 183
           QKRYAVVSAIAASA+PSLVLARGHRIESVPELPLV+SDSAEG+EKTS+AIKVLKQVGA P
Sbjct: 123 QKRYAVVSAIAASAIPSLVLARGHRIESVPELPLVISDSAEGIEKTSSAIKVLKQVGALP 182

Query: 184 DAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNL 243
           DAEKAKDSHAIR GKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPG++I NVERLNL
Sbjct: 183 DAEKAKDSHAIRTGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGIDIVNVERLNL 242

Query: 244 LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINSDE 303
           LKLAPGGHLGRFVIWTK+AFEKLDSIYGSFEK SEKKKGYVLPRSKMVNADL+RIINSDE
Sbjct: 243 LKLAPGGHLGRFVIWTKTAFEKLDSIYGSFEKSSEKKKGYVLPRSKMVNADLARIINSDE 302

Query: 304 VQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 337
           VQSVVKPIKK VKR  LKKNPLKNLNAMLKLNP
Sbjct: 303 VQSVVKPIKKGVKRPSLKKNPLKNLNAMLKLNP 335

[Close]

BLAST of Carg25801 vs. TrEMBL
Match: tr|A0A0B0NP69|A0A0B0NP69_GOSAR (60S ribosomal L4 OS=Gossypium arboreum OX=29729 GN=F383_05206 PE=4 SV=1)

HSP 1 Score: 612.5 bits (1578), Expect = 6.1e-172
Identity = 309/336 (91.96%), Postives = 323/336 (96.13%), Query Frame = 0


Query: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMRASIRPDIVSFVHSNISKNSRQPYAVS 60
           MA AAARPLVSVQ++E DMATDA P VPL DVM+ASIRPDIV+FVH NISKNSRQPYAVS
Sbjct: 1   MAAAAARPLVSVQTIESDMATDATPTVPLADVMKASIRPDIVTFVHDNISKNSRQPYAVS 60

Query: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120
           KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI
Sbjct: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120

Query: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180
           NVNQKRYAV SAIAASAVPSLV+ARGHRIESVPE+PLV+SD+AE VEKTSAAIKVLKQVG
Sbjct: 121 NVNQKRYAVASAIAASAVPSLVMARGHRIESVPEMPLVISDAAESVEKTSAAIKVLKQVG 180

Query: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240
           A+PD EKAKDS  IRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVE+ANVER
Sbjct: 181 AYPDVEKAKDSQGIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEVANVER 240

Query: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300
           LNLLKLAPGGHLGRF+IWTKSA+EKLDSIYGSFEKPSEKKKGY+LPRSKMVNADL RIIN
Sbjct: 241 LNLLKLAPGGHLGRFIIWTKSAYEKLDSIYGSFEKPSEKKKGYILPRSKMVNADLGRIIN 300

Query: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNP 337
           SDEVQSVVKPIKK +KRAPLKKNPLKNLNAMLKLNP
Sbjct: 301 SDEVQSVVKPIKKEIKRAPLKKNPLKNLNAMLKLNP 336

The following BLAST results are available for this feature:

BLAST of Carg25801 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963036.1	4.0e-183	100.00	60S ribosomal protein L4 [Cucurbita moschata]	[more]
XP_022972645.1	8.9e-183	99.70	60S ribosomal protein L4-like [Cucurbita maxima] >XP_023517997.1 60S ribosomal p...	[more]
XP_022925909.1	7.8e-179	98.20	60S ribosomal protein L4 [Cucurbita moschata] >XP_023544338.1 60S ribosomal prot...	[more]
XP_008449286.1	1.1e-177	98.20	PREDICTED: 60S ribosomal protein L4-like [Cucumis melo]	[more]
XP_022977811.1	1.5e-177	97.00	60S ribosomal protein L4 [Cucurbita maxima]	[more]

BLAST of Carg25801 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G09630.1	6.2e-162	83.93	Ribosomal protein L4/L1 family	[more]
AT5G02870.1	3.4e-160	83.63	Ribosomal protein L4/L1 family	[more]

BLAST of Carg25801 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9XF97\|RL4_PRUAR	2.7e-167	89.25	60S ribosomal protein L4 OS=Prunus armeniaca OX=36596 GN=RPL4 PE=2 SV=1	[more]
sp\|Q9SF40\|RL4A_ARATH	1.1e-160	83.93	60S ribosomal protein L4-1 OS=Arabidopsis thaliana OX=3702 GN=RPL4A PE=1 SV=1	[more]
sp\|P49691\|RL4B_ARATH	6.1e-159	83.63	60S ribosomal protein L4-2 OS=Arabidopsis thaliana OX=3702 GN=RPL4D PE=1 SV=2	[more]
sp\|Q9D8E6\|RL4_MOUSE	2.9e-116	62.28	60S ribosomal protein L4 OS=Mus musculus OX=10090 GN=Rpl4 PE=1 SV=3	[more]
sp\|P36578\|RL4_HUMAN	3.8e-116	62.28	60S ribosomal protein L4 OS=Homo sapiens OX=9606 GN=RPL4 PE=1 SV=5	[more]

BLAST of Carg25801 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BL28\|A0A1S3BL28_CUCME	7.5e-178	98.20	60S ribosomal protein L4-like OS=Cucumis melo OX=3656 GN=LOC103491208 PE=4 SV=1	[more]
tr\|A0A0A0L0Q4\|A0A0A0L0Q4_CUCSA	3.7e-177	97.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G292970 PE=4 SV=1	[more]
tr\|A0A1S3B5N1\|A0A1S3B5N1_CUCME	8.6e-174	93.75	60S ribosomal protein L4 OS=Cucumis melo OX=3656 GN=LOC103486445 PE=4 SV=1	[more]
tr\|A0A0A0LDW3\|A0A0A0LDW3_CUCSA	4.7e-172	93.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736750 PE=4 SV=1	[more]
tr\|A0A0B0NP69\|A0A0B0NP69_GOSAR	6.1e-172	91.96	60S ribosomal L4 OS=Gossypium arboreum OX=29729 GN=F383_05206 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR013000	Ribosomal_L4/L1e_euk/arc_CS
IPR002136	Ribosomal_L4/L1e
IPR025755	Ribos_L4_C_dom
IPR023574	Ribosomal_L4_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25801-RA	Carg25801-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023574	Ribosomal protein L4 domain superfamily	GENE3D	G3DSA:3.40.1370.10		coord: 4..310 e-value: 4.8E-140 score: 467.8
IPR023574	Ribosomal protein L4 domain superfamily	SUPERFAMILY	SSF52166	Ribosomal protein L4	coord: 10..268
IPR025755	60S ribosomal protein L4, C-terminal domain	PFAM	PF14374	Ribos_L4_asso_C	coord: 281..345 e-value: 1.1E-24 score: 86.1
IPR002136	Ribosomal protein L4/L1e	PFAM	PF00573	Ribosomal_L4	coord: 27..267 e-value: 2.1E-40 score: 138.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..96
None	No IPR available	PANTHER	PTHR19431:SF1	SUBFAMILY NOT NAMED	coord: 4..337
None	No IPR available	PANTHER	PTHR19431	60S RIBOSOMAL PROTEIN L4	coord: 4..337
IPR013000	Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site	PROSITE	PS00939	RIBOSOMAL_L1E	coord: 121..147

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25801	Cla018267	Watermelon (97103) v1	carwmB0415
Carg25801	Csa4G292970	Cucumber (Chinese Long) v2	carcuB0449
Carg25801	MELO3C014262	Melon (DHL92) v3.5.1	carmeB0426
Carg25801	MELO3C009306	Melon (DHL92) v3.5.1	carmeB0425
Carg25801	ClCG04G008800	Watermelon (Charleston Gray)	carwcgB0411
Carg25801	CSPI04G14000	Wild cucumber (PI 183967)	carcpiB0454
Carg25801	Cucsa.065650	Cucumber (Gy14) v1	carcgyB0484
Carg25801	CmaCh07G009400	Cucurbita maxima (Rimu)	carcmaB0582
Carg25801	CmaCh03G012560	Cucurbita maxima (Rimu)	carcmaB0581
Carg25801	CmoCh07G009870	Cucurbita moschata (Rifu)	carcmoB0566
Carg25801	CmoCh03G012530	Cucurbita moschata (Rifu)	carcmoB0565
Carg25801	Lsi01G013670	Bottle gourd (USVL1VR-Ls)	carlsiB380
Carg25801	Cp4.1LG19g04290	Cucurbita pepo (Zucchini)	carcpeB0588
Carg25801	Cp4.1LG10g04950	Cucurbita pepo (Zucchini)	carcpeB0587
Carg25801	CsGy4G013570	Cucumber (Gy14) v2	carcgybB0425
Carg25801	MELO3C014262.2	Melon (DHL92) v3.6.1	carmedB0428
Carg25801	CsaV3_4G024340	Cucumber (Chinese Long) v3	carcucB0450
Carg25801	Cla97C10G203840	Watermelon (97103) v2	carwmbB0441
Carg25801	Cla97C04G075480	Watermelon (97103) v2	carwmbB0442
Carg25801	Bhi03G001288	Wax gourd	carwgoB0504

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25801	Carg01014	Silver-seed gourd	carcarB190
Carg25801	Carg15287	Silver-seed gourd	carcarB436

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25801	Melon (DHL92) v3.5.1	carmeB0427
Carg25801	Melon (DHL92) v3.6.1	carmedB0429