Carg25524 (gene) Silver-seed gourd

Overview
NameCarg25524
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionZinc finger, RING-type
LocationCucurbita_argyrosperma_scaffold_302 : 32658 .. 33761 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGTGATCGGCGGAGGATTACGCTTTACGATCAGATGTTAGCGGTCGGCGATGGCAGAGAGTTCGCCCGTGGTTTGACACTCAACGACGTTTTGACCATTCATAACAGAGCTTCGCCGAGCCCTTCGCCGGCTGTGAGACTAAACGGCCGGACTTTGCTCGATATTATAAGAGACGACGTTGGGATATCTCCTGTTGATAACCGAGAGAGGAAATCTTGGAAGTTTTTGAGAGATCGCCTTCGTTTGAATCTCAGATCTCAAATTCTGTCGCCGAATTCGCTTCGTATACCTAGTTTTTCGTCGGCGGATATGATGCCAAACGAAGAAGAATCGTCGGAATCGACCACCACCACTGCTGCCGCCCCGTCTCTCCGGCAGATTTCACGGCGGAGCTCGTCGCGGTTAAGCCTGAACGCGAGGCCAAAGTCCGAGGCTGCAAATTCCGACGATTCTCCAGAGAACAAGAATTCCTCCACCGCTTCCGGCTCCGGCAGTAGGCGGAGTCTCCAAAAGCCACAAATGTCGCGGCACAGCTCGACGAGATTCACCCTAGAACGGAGCGAGAGTTTCACGGACTTGTCTGATCCAGCGCGTGACGGCCCGCGCCGCCTCTCGGCTGCGCTGGCAATGGAGAGATCGATGTCAGCTAGAGAAACAGTGGTGGCTCAAGAAGCCGCCGACGCAGAAATCACCGCCCACGAAGAAGAAGAACAAGAAGAAGAACAGGAACAACCAGAAGAACAAGAATCCAGCGCGGCGGCGCCGGTGAGAATGTCACTTATGGATCTGTTAGAGGAAACGGACAGGAAAATGGGGTTGGAAGGGTCAAGATACAGAATAGAAGAGGAAGAGGAAGAGGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAATTCATCATAAGGTCACAGCCAAACGCGGCGGAGGACACAGCTGGGGAGCAGAACGGCGTTGCTGCGTGTGCATGGTGCGTTATAAAGGGGCAGCATTTATCCCCTGTGGTCACACCTTTTGTAGGCTGTGTTCAAGAGAGCTTTGGGTGAGTAGAGGGAACTGTCCACTTTGCAATGGCTTTATTTTGGAGATTCTTGACATCTTCTGA

mRNA sequence

ATGGAAGGTGATCGGCGGAGGATTACGCTTTACGATCAGATGTTAGCGGTCGGCGATGGCAGAGAGTTCGCCCGTGGTTTGACACTCAACGACGTTTTGACCATTCATAACAGAGCTTCGCCGAGCCCTTCGCCGGCTGTGAGACTAAACGGCCGGACTTTGCTCGATATTATAAGAGACGACGTTGGGATATCTCCTGTTGATAACCGAGAGAGGAAATCTTGGAAGTTTTTGAGAGATCGCCTTCGTTTGAATCTCAGATCTCAAATTCTGTCGCCGAATTCGCTTCGTATACCTAGTTTTTCGTCGGCGGATATGATGCCAAACGAAGAAGAATCGTCGGAATCGACCACCACCACTGCTGCCGCCCCGTCTCTCCGGCAGATTTCACGGCGGAGCTCGTCGCGGTTAAGCCTGAACGCGAGGCCAAAGTCCGAGGCTGCAAATTCCGACGATTCTCCAGAGAACAAGAATTCCTCCACCGCTTCCGGCTCCGGCAGTAGGCGGAGTCTCCAAAAGCCACAAATGTCGCGGCACAGCTCGACGAGATTCACCCTAGAACGGAGCGAGAGTTTCACGGACTTGTCTGATCCAGCGCGTGACGGCCCGCGCCGCCTCTCGGCTGCGCTGGCAATGGAGAGATCGATGTCAGCTAGAGAAACAGTGGTGGCTCAAGAAGCCGCCGACGCAGAAATCACCGCCCACGAAGAAGAAGAACAAGAAGAAGAACAGGAACAACCAGAAGAACAAGAATCCAGCGCGGCGGCGCCGGTGAGAATGTCACTTATGGATCTGTTAGAGGAAACGGACAGGAAAATGGGGTTGGAAGGGTCAAGATACAGAATAGAAGAGGAAGAGGAAGAGGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAATTCATCATAAGGTCACAGCCAAACGCGGCGGAGGACACAGCTGGGGAGCAGAACGGCGTTGCTGCGTGTGCATGGTGCGTTATAAAGGGGCAGCATTTATCCCCTGTGGTCACACCTTTTGTAGGCTGTGTTCAAGAGAGCTTTGGGTGAGTAGAGGGAACTGTCCACTTTGCAATGGCTTTATTTTGGAGATTCTTGACATCTTCTGA

Coding sequence (CDS)

ATGGAAGGTGATCGGCGGAGGATTACGCTTTACGATCAGATGTTAGCGGTCGGCGATGGCAGAGAGTTCGCCCGTGGTTTGACACTCAACGACGTTTTGACCATTCATAACAGAGCTTCGCCGAGCCCTTCGCCGGCTGTGAGACTAAACGGCCGGACTTTGCTCGATATTATAAGAGACGACGTTGGGATATCTCCTGTTGATAACCGAGAGAGGAAATCTTGGAAGTTTTTGAGAGATCGCCTTCGTTTGAATCTCAGATCTCAAATTCTGTCGCCGAATTCGCTTCGTATACCTAGTTTTTCGTCGGCGGATATGATGCCAAACGAAGAAGAATCGTCGGAATCGACCACCACCACTGCTGCCGCCCCGTCTCTCCGGCAGATTTCACGGCGGAGCTCGTCGCGGTTAAGCCTGAACGCGAGGCCAAAGTCCGAGGCTGCAAATTCCGACGATTCTCCAGAGAACAAGAATTCCTCCACCGCTTCCGGCTCCGGCAGTAGGCGGAGTCTCCAAAAGCCACAAATGTCGCGGCACAGCTCGACGAGATTCACCCTAGAACGGAGCGAGAGTTTCACGGACTTGTCTGATCCAGCGCGTGACGGCCCGCGCCGCCTCTCGGCTGCGCTGGCAATGGAGAGATCGATGTCAGCTAGAGAAACAGTGGTGGCTCAAGAAGCCGCCGACGCAGAAATCACCGCCCACGAAGAAGAAGAACAAGAAGAAGAACAGGAACAACCAGAAGAACAAGAATCCAGCGCGGCGGCGCCGGTGAGAATGTCACTTATGGATCTGTTAGAGGAAACGGACAGGAAAATGGGGTTGGAAGGGTCAAGATACAGAATAGAAGAGGAAGAGGAAGAGGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAATTCATCATAAGGTCACAGCCAAACGCGGCGGAGGACACAGCTGGGGAGCAGAACGGCGTTGCTGCGTGTGCATGGTGCGTTATAAAGGGGCAGCATTTATCCCCTGTGGTCACACCTTTTGTAGGCTGTGTTCAAGAGAGCTTTGGGTGAGTAGAGGGAACTGTCCACTTTGCAATGGCTTTATTTTGGAGATTCTTGACATCTTCTGA

Protein sequence

MEGDRRRITLYDQMLAVGDGREFARGLTLNDVLTIHNRASPSPSPAVRLNGRTLLDIIRDDVGISPVDNRERKSWKFLRDRLRLNLRSQILSPNSLRIPSFSSADMMPNEEESSESTTTTAAAPSLRQISRRSSSRLSLNARPKSEAANSDDSPENKNSSTASGSGSRRSLQKPQMSRHSSTRFTLERSESFTDLSDPARDGPRRLSAALAMERSMSARETVVAQEAADAEITAHEEEEQEEEQEQPEEQESSAAAPVRMSLMDLLEETDRKMGLEGSRYRIEEEEEEEEEEEEEEEEIHHKVTAKRGGGHSWGAERRCCVCMVRYKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF
Homology
[Close]
BLAST of Carg25524 vs. NCBI nr
Match: XP_022991704.1 (E3 ubiquitin-protein ligase RNF8-like [Cucurbita maxima])

HSP 1 Score: 456.4 bits (1173), Expect = 8.9e-125
Identity = 330/367 (89.92%), Postives = 331/367 (90.19%), Query Frame = 0 

Query: 1   MEGDRRRITLYDQMLAVGDGREFARGLTLNDVLTIHNRASPSPSPAVRLNGRTLLDIIRD 60
           MEGDRRRITLYDQMLAVGDGREFARGLTLNDVLTIHNRASPSPSPAVRLNGRTLLDIIRD
Sbjct: 1   MEGDRRRITLYDQMLAVGDGREFARGLTLNDVLTIHNRASPSPSPAVRLNGRTLLDIIRD 60

Query: 61  DVGISPVDNRERKSWKFLRDRLRLNLRSQILSPNSLRIPSFSSADMXXXXXXXXXXXXXX 120
           DVGISPV NRERKSWKFLRDRLRLNLRSQILSPNSLRIPSFSSA+MXXXXXXXXXXXXXX
Sbjct: 61  DVGISPVGNRERKSWKFLRDRLRLNLRSQILSPNSLRIPSFSSAEMXXXXXXXXXXXXXX 120

Query: 121 XXXXXXRQISRRSSSRLSLNARPKSEAANSDDSPENKNSSTASGSGSRRSLQKPQMSRHS 180
           XXXXX RQISRRSSSRLSLNARPKSEAANS DSPE          GSRRSLQKPQMSRHS
Sbjct: 121 XXXXXLRQISRRSSSRLSLNARPKSEAANSGDSPEXXXXXXXXXXGSRRSLQKPQMSRHS 180

Query: 181 STRFTLERSESFTDLSDPARDGPRRLSAALAMERSMSARETVVAQXXXXXXXXXXXXXXX 240
           STRFTLERSESFTDLSDPARDG RRLSAALAMERSMSAR      XXXXXXXXXXXXXXX
Sbjct: 181 STRFTLERSESFTDLSDPARDGARRLSAALAMERSMSAR-XXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXPVRMSLMDLLEETDRKMGLEGSRYRIEXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXPVRMSLMDLLEETDRKMGLEGSRYRIE      XXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXPVRMSLMDLLEETDRKMGLEGSRYRIE------XXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXCVCMVRYKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFI 360
           XXXXXXXXX          CVCMVRYKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFI
Sbjct: 301 XXXXXXXXXEHSWGAERRCCVCMVRYKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFI 360

Query: 361 LEILDIF 368
           LEILDIF
Sbjct: 361 LEILDIF 360

[Close]
BLAST of Carg25524 vs. NCBI nr
Match: XP_023522866.1 (chromo domain-containing protein cec-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 373.6 bits (958), Expect = 7.6e-100
Identity = 269/373 (72.12%), Postives = 288/373 (77.21%), Query Frame = 0 

Query: 1   MEGDRRRITLYDQMLAVGDGREFARGLTLNDVLTIHNRASPSPSPAVRLNGRTLLDIIRD 60
           MEG RRRITLYDQMLAVG+GRE   GLTLNDVLT+H RASP+PSP VRLNGRTLLDI+RD
Sbjct: 1   MEGGRRRITLYDQMLAVGEGRELTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRD 60

Query: 61  DVGISP-VDNRERKSWKFLRDRLRLNLRSQILSPNSLRIPSFSSADM--XXXXXXXXXXX 120
           DVG SP V NRERKSWKFLRDRLRLNLRSQI  PNSLR   FSSA+M             
Sbjct: 61  DVGKSPAVGNRERKSWKFLRDRLRLNLRSQIPPPNSLRFAVFSSAEMTSNEEESPESTTP 120

Query: 121 XXXXXXXXXRQISRRSSSRLSLNARPKSEAANSDDSPENKNS-STASGSGSR--RSLQKP 180
                    RQISRRSS+RLS N     EA NS +SPEN +S ST +G+GSR  RSL +P
Sbjct: 121 VVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNDSASTIAGTGSRSSRSLLRP 180

Query: 181 QMSRHSSTRFTLERSESFTDLSDPARDGPRRLSAALAMERSMSARETVVAQXXXXXXXXX 240
           QMSR +STR +LERSESFTDL++P  +G RRLSAALAMERSMSARETV  Q         
Sbjct: 181 QMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQ------EAA 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXPVRMSLMDLLEETDRKMGLEGSRYRIEXXXXXXXXXXX 300
             XXXXXXXXXXXXXXX     PVRMSLMDLLEETDR+MG EGSRY+IE        XXX
Sbjct: 241 DAXXXXXXXXXXXXXXXVETAAPVRMSLMDLLEETDRQMGFEGSRYKIE------DEXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXCVCMVRYKGAAFIPCGHTFCRLCSRELWVSRGNCP 360
           XXXXXXXXXXXXXXXXXXXXXXXXX  CMVR+KGAAFIPCGHTFCRLCSREL VSRGNCP
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCP 360

Query: 361 LCNGFILEILDIF 368
           LCNGFILEILDIF
Sbjct: 361 LCNGFILEILDIF 361

[Close]
BLAST of Carg25524 vs. NCBI nr
Match: XP_023004831.1 (nucleolin-like [Cucurbita maxima])

HSP 1 Score: 372.5 bits (955), Expect = 1.7e-99
Identity = 269/373 (72.12%), Postives = 288/373 (77.21%), Query Frame = 0 

Query: 1   MEGDRRRITLYDQMLAVGDGREFARGLTLNDVLTIHNRASPSPSPAVRLNGRTLLDIIRD 60
           MEG RRRITLYD+MLAVGDGRE   GLTLNDVLT+H RASP+PSP VRLNGRTLLDI+RD
Sbjct: 1   MEGGRRRITLYDRMLAVGDGREVTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRD 60

Query: 61  DVGISP-VDNRERKSWKFLRDRLRLNLRSQILSPNSLRIPSFSSADM--XXXXXXXXXXX 120
           DVG SP   NRERKSWKFLRDRLRLNLRSQI  PNSLR   FSSA+M             
Sbjct: 61  DVGKSPAAGNRERKSWKFLRDRLRLNLRSQIPPPNSLRFAVFSSAEMTSNEEQSPESTTP 120

Query: 121 XXXXXXXXXRQISRRSSSRLSLNARPKSEAANSDDSPENKNS-STASGSGSR--RSLQKP 180
                    RQISRR+S+RLS N     EA NS +SPEN NS ST +G+GSR  RSL +P
Sbjct: 121 VVAAAVPVLRQISRRNSTRLSQNIPTSPEATNSGESPENNNSDSTIAGTGSRSSRSLLRP 180

Query: 181 QMSRHSSTRFTLERSESFTDLSDPARDGPRRLSAALAMERSMSARETVVAQXXXXXXXXX 240
           QMSR +STR +LERSESFTDL++P  +G RRLSAALAMERSMSARETV  Q         
Sbjct: 181 QMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQ------EAA 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXPVRMSLMDLLEETDRKMGLEGSRYRIEXXXXXXXXXXX 300
             XXXXXXXXXXXXXXX     PVRMSLMDLLEETDR+MG EGSRY+IE       XXXX
Sbjct: 241 DAXXXXXXXXXXXXXXXVETAAPVRMSLMDLLEETDRQMGFEGSRYKIE-----DEXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXCVCMVRYKGAAFIPCGHTFCRLCSRELWVSRGNCP 360
           XXXXXXXXXXXXXXXXXXXXXXXXX  CMVR+KGAAFIPCGHTFCRLCSREL VSRGNCP
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCP 360

Query: 361 LCNGFILEILDIF 368
           LCNGFILEILDIF
Sbjct: 361 LCNGFILEILDIF 362

[Close]
BLAST of Carg25524 vs. NCBI nr
Match: XP_022960262.1 (chromo domain-containing protein cec-1-like [Cucurbita moschata])

HSP 1 Score: 371.7 bits (953), Expect = 2.9e-99
Identity = 268/373 (71.85%), Postives = 285/373 (76.41%), Query Frame = 0 

Query: 1   MEGDRRRITLYDQMLAVGDGREFARGLTLNDVLTIHNRASPSPSPAVRLNGRTLLDIIRD 60
           MEG RRRITLYDQMLAVGDGRE   GLTLNDVLT+H RASP+PSP VRLNGRTLLDI+RD
Sbjct: 1   MEGGRRRITLYDQMLAVGDGRELTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRD 60

Query: 61  DVGISP-VDNRERKSWKFLRDRLRLNLRSQILSPNSLRIPSFSSADM--XXXXXXXXXXX 120
           DVG SP V NRERKSWKFLRDRLRLNLRSQI  PNSLR   FSSA+M             
Sbjct: 61  DVGKSPAVGNRERKSWKFLRDRLRLNLRSQIPPPNSLRFAVFSSAEMTSNEEESPESTTP 120

Query: 121 XXXXXXXXXRQISRRSSSRLSLNARPKSEAANSDDSPENKNSSTA---SGSGSRRSLQKP 180
                    RQISRRSS+RLS N     EA NS +SPEN NS +    +GS S RSL +P
Sbjct: 121 VVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNNSDSTIADTGSRSSRSLLRP 180

Query: 181 QMSRHSSTRFTLERSESFTDLSDPARDGPRRLSAALAMERSMSARETVVAQXXXXXXXXX 240
           QMSR +STR +LERSESFTDL++P  +G R LSAALAMERSMSARETV  Q         
Sbjct: 181 QMSRRNSTRRSLERSESFTDLTEPVHEGTRLLSAALAMERSMSARETVATQ------EAA 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXPVRMSLMDLLEETDRKMGLEGSRYRIEXXXXXXXXXXX 300
             XXXXXXXXXXXXXXX     PVRMSLMDLLEETDR+MG EGSRY+IE       XXXX
Sbjct: 241 DAXXXXXXXXXXXXXXXVETAAPVRMSLMDLLEETDRQMGFEGSRYKIE-----DEXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXCVCMVRYKGAAFIPCGHTFCRLCSRELWVSRGNCP 360
           XXXXXXXXXXXXXXXXXXXXXXXXX  CMVR+KGAAFIPCGHTFCRLCSREL VSRGNCP
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCP 360

Query: 361 LCNGFILEILDIF 368
           LCNGFILEILDIF
Sbjct: 361 LCNGFILEILDIF 362

[Close]
BLAST of Carg25524 vs. NCBI nr
Match: XP_022954164.1 (histone H3.v1-like [Cucurbita moschata])

HSP 1 Score: 370.5 bits (950), Expect = 6.4e-99
Identity = 305/371 (82.21%), Postives = 307/371 (82.75%), Query Frame = 0 

Query: 1   MEGDRRRITLYDQMLAVGDGREFARGLTLNDVLTIHNRAS----PSPSPAVRLNGRTLLD 60
           MEGDRRRITLYDQMLAVGDGREFARGLTLNDVLTIHNRAS           RL+GRTLLD
Sbjct: 1   MEGDRRRITLYDQMLAVGDGREFARGLTLNDVLTIHNRASXXXXXXXXXXXRLSGRTLLD 60

Query: 61  IIRDDVGISPVDNRERKSWKFLRDRLRLNLRSQILSPNSLRIPSFSSADMXXXXXXXXXX 120
           IIRDDVGISPVDNRERKSWKFLRDRLRLNLRSQILSPNSLRIPSFSSA+ XXXXXXXXXX
Sbjct: 61  IIRDDVGISPVDNRERKSWKFLRDRLRLNLRSQILSPNSLRIPSFSSAEXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXRQISRRSSSRLSLNARPKSEAANSDDSPENKNSSTASGSGSRRSLQKPQM 180
           XXXXXXXXXX                                          RSLQKPQM
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLQKPQM 180

Query: 181 SRHSSTRFTLERSESFTDLSDPARDGPRRLSAALAMERSMSARETVVAQXXXXXXXXXXX 240
           SRHSSTRFTLERSESFTDLSDPARDGPRRLSAALAMERSMSAR      XXXXXXXXXXX
Sbjct: 181 SRHSSTRFTLERSESFTDLSDPARDGPRRLSAALAMERSMSARXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXPVRMSLMDLLEETDRKMGLEGSRYRIEXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXX PVRMSLMDLLEETDRKMGLEGSRYRIE   XXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXAPVRMSLMDLLEETDRKMGLEGSRYRIE---XXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXCVCMVRYKGAAFIPCGHTFCRLCSRELWVSRGNCPLC 360
           XXXXXXXXXXXXXXXXXXXXXXXCVCMVRYKGAAFIPCGHTFCRLCSRELWVSRGNCPLC
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXCVCMVRYKGAAFIPCGHTFCRLCSRELWVSRGNCPLC 360

Query: 361 NGFILEILDIF 368
           NGFILEILDIF
Sbjct: 361 NGFILEILDIF 368

[Close]
BLAST of Carg25524 vs. TAIR10
Match: AT4G13100.2 (RING/U-box superfamily protein)

HSP 1 Score: 102.8 bits (255), Expect = 4.5e-22
Identity = 55/111 (49.55%), Postives = 61/111 (54.95%), Query Frame = 0 

Query: 257 PVRMSLMDLLEETDRKMGLEGSRYRIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 316
           P RMSLM+LLE+ D  M    +R  +E                                 
Sbjct: 167 PPRMSLMELLEDNDGHMYELSARDEVE------------VEGRDGCDGGGEAVAVTGAAE 226

Query: 317 XXXCVCMVRYKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF 368
              CVCMVR KGAAFIPCGHTFCRLCSRELWV RGNCPLCN  IL++LDIF
Sbjct: 227 LGCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF 265

[Close]
BLAST of Carg25524 vs. TAIR10
Match: AT3G25030.1 (RING/U-box superfamily protein)

HSP 1 Score: 101.7 bits (252), Expect = 1.0e-21
Identity = 78/214 (36.45%), Postives = 93/214 (43.46%), Query Frame = 0 

Query: 157 KNSSTASGSGSRRSLQKPQMSRHSSTR---FTLERSESFTDLSDPARDGPRRLSAALAME 216
           +N S    S S  SL  P  +R + +    F L  S + T+ +    +G  RL A LA E
Sbjct: 87  RNGSVWISSNSIPSLDTPIPNRDNVSHQLGFLLSNSGNVTEEASSV-EGRIRLGAVLAEE 146

Query: 217 RSMSARETVVAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRMSLMDLLEETDRKM 276
           R++SARE                                    P RMSLM+LLEE + +M
Sbjct: 147 RALSARE--------------------------EETPAEREVEPARMSLMELLEENEGQM 206

Query: 277 GLEGSRYRIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVCMVRYKGAAFIP 336
                    E                                    CVCMVR KGAAFIP
Sbjct: 207 SFVSVDGEAE-----------------------EEVAAVTAAEISCCVCMVRSKGAAFIP 250

Query: 337 CGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF 368
           CGHTFCRLCSRELWV RGNCPLCN  ILE+LD+F
Sbjct: 267 CGHTFCRLCSRELWVQRGNCPLCNTTILEVLDLF 250

[Close]
BLAST of Carg25524 vs. TAIR10
Match: AT4G22250.1 (RING/U-box superfamily protein)

HSP 1 Score: 93.2 bits (230), Expect = 3.6e-19
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 0 

Query: 320 CVCMVRYKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF 368
           CVCM R KGAAFIPCGHTFCR+CSRELW++RG+CPLCN  I+EILDIF
Sbjct: 167 CVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 214

[Close]
BLAST of Carg25524 vs. TAIR10
Match: AT4G03965.1 (RING/U-box superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-18
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0 

Query: 320 CVCMVRYKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF 368
           CVCM R KGAAFIPCGHTFCR+CSRE+W++RG+CPLCN  I+EILDI+
Sbjct: 162 CVCMGRKKGAAFIPCGHTFCRVCSREVWLNRGSCPLCNRPIIEILDIY 209

[Close]
BLAST of Carg25524 vs. TAIR10
Match: AT1G62370.1 (RING/U-box superfamily protein)

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-17
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 320 CVCMVRYKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF 368
           CVCM R KGAAFIPCGHT+CR+CSRE+W++RG CPLCN  I ++LD++
Sbjct: 157 CVCMGREKGAAFIPCGHTYCRVCSREIWMNRGTCPLCNRSIFDVLDLY 204

[Close]
BLAST of Carg25524 vs. TrEMBL
Match: tr|A0A1S3C6E1|A0A1S3C6E1_CUCME (nucleolin-like OS=Cucumis melo OX=3656 GN=LOC103497559 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.2e-91
Identity = 271/369 (73.44%), Postives = 287/369 (77.78%), Query Frame = 0 

Query: 1   MEGDRRRITLYDQMLAVGDGREFARGLTLNDVLTIHNRASPSPSPAVRLNGRTLLDIIRD 60
           MEG RRRITLYDQMLAV DGRE A G TLNDVLTI  RASPSPSPAVRL+GRTLLDIIRD
Sbjct: 1   MEGGRRRITLYDQMLAVSDGRELASGFTLNDVLTIQKRASPSPSPAVRLHGRTLLDIIRD 60

Query: 61  DVGISPVDNRERKSWKFLRDRLRLNLRSQILSPNSLRIPSFSSADM--XXXXXXXXXXXX 120
           DVG SPV NRERKSWKFLRDRLRLNLRSQI  PNSLR P F+SADM              
Sbjct: 61  DVGKSPVSNRERKSWKFLRDRLRLNLRSQIPPPNSLRFPGFTSADMMPNDEQSPEPTTTA 120

Query: 121 XXXXXXXXRQISRRSSSRLSLNARPKSEAANSDDSPENKNSSTASGSGSRRSLQKPQMSR 180
                   RQISRR+S+R + +  P                         RSL +PQMSR
Sbjct: 121 AVSAAPSLRQISRRNSTRFNPSV-PXXXXXXXXXXXXXXXXXXXXXXXXXRSLLRPQMSR 180

Query: 181 HSSTRFTLERSESFTDLSDPARDGPRRLSAALAMERSMSARETVVAQXXXXXXXXXXXXX 240
           H+STRF++ERSESFTDL++PAR+G RRLSAALA ERSMSARE      XXXXXXXXXXXX
Sbjct: 181 HNSTRFSVERSESFTDLTEPAREGTRRLSAALAEERSMSARE------XXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXPVRMSLMDLLEETDRKMGLEGSRYRIEXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXX +RMSLMDLLEETDR+MG EGS YRIE    XXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXMRMSLMDLLEETDRQMGFEGSTYRIE----XXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXCVCMVRYKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNG 360
           XXXXXXXXXXXXXXXXXXXXX  CMVR+KGAAFIPCGHTFCRLCSRELWVSRGNCPLCNG
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNG 358

Query: 361 FILEILDIF 368
           FILEILDIF
Sbjct: 361 FILEILDIF 358

[Close]
BLAST of Carg25524 vs. TrEMBL
Match: tr|A0A0A0K6R9|A0A0A0K6R9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G342770 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 9.4e-91
Identity = 256/369 (69.38%), Postives = 278/369 (75.34%), Query Frame = 0 

Query: 1   MEGDRRRITLYDQMLAVGDGREFARGLTLNDVLTIHNRASPSPSPAVRLNGRTLLDIIRD 60
           MEG RRRITLYDQMLAV DGR+ A G TLNDVL I  RA PS SPAVRL+GRTLLDIIRD
Sbjct: 1   MEGGRRRITLYDQMLAVSDGRDLAGGFTLNDVLAIQKRALPSSSPAVRLHGRTLLDIIRD 60

Query: 61  DVGISPVDNRERKSWKFLRDRLRLNLRSQILSPNSLRIPSFSSADM--XXXXXXXXXXXX 120
           DVG SPV NRER SWKF RDRLRL++RSQI   NSLR P  +SA+M              
Sbjct: 61  DVGKSPVSNRERTSWKFFRDRLRLSIRSQIPPSNSLRFPGLTSAEMMSNDEHSPEPTTTA 120

Query: 121 XXXXXXXXRQISRRSSSRLSLNARPKSEAANSDDSPENKNSSTASGSGSRRSLQKPQMSR 180
                   RQISRR+S+RL+ + +P SEA NS ++               RSL +PQMSR
Sbjct: 121 AVSAAPSLRQISRRNSTRLNPSVQPSSEATNS-NAXXXXXXXXXXXXXXGRSLLRPQMSR 180

Query: 181 HSSTRFTLERSESFTDLSDPARDGPRRLSAALAMERSMSARETVVAQXXXXXXXXXXXXX 240
           H+STRF++ERSESFTDL++P R+G RRLSAALA ERSMSAR      XXXXXXXXXXXXX
Sbjct: 181 HNSTRFSVERSESFTDLTEPTREGTRRLSAALAEERSMSAR------XXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXPVRMSLMDLLEETDRKMGLEGSRYRIEXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXX      PVRMSLMDLLEETDR+MG EGS YRIE       XXXXXXXX
Sbjct: 241 XXXXXXXXXXXXAESTPAPVRMSLMDLLEETDRQMGFEGSTYRIE-------XXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXCVCMVRYKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNG 360
           XXXXXXXXXXXXXXXXX    CVCMVR+KGAAFIPCGHTFCRLCSRELWVSRGNCPLCNG
Sbjct: 301 XXXXXXXXXXXXXXXXXEPHCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNG 355

Query: 361 FILEILDIF 368
           FILEILDIF
Sbjct: 361 FILEILDIF 355

[Close]
BLAST of Carg25524 vs. TrEMBL
Match: tr|V4T971|V4T971_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10020442mg PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.6e-48
Identity = 204/404 (50.50%), Postives = 246/404 (60.89%), Query Frame = 0 

Query: 6   RRITLYDQMLAVGDGREFARGLTLNDVLTIHNRASPSPSPAVRLNGRTLLDIIRD-DVGI 65
           RRITL DQM AV D R+   GLTL+ +LT + R SP  +PA    GRTLLDIIRD D   
Sbjct: 20  RRITLLDQMSAVQDRRDPLAGLTLDAILT-NKRPSPPRAPA----GRTLLDIIRDEDPNG 79

Query: 66  SPVDNRERKSWKFLRDRLRL----------------------------NLRSQILSPNSL 125
               +++RKSWK  RDRLRL                            N RSQ++  +S+
Sbjct: 80  KNFGHKDRKSWKLFRDRLRLKRAGAAWTSSVRIPTSDIPIPSSSLSNSNPRSQLIRRSSV 139

Query: 126 RIPSFSSADMXXXXXXXXXXXXXXXXXXXXRQISRRSSSRLSLNARPKSEAANSDDSPEN 185
           R  +  + ++                     Q +RR SS+++ ++   +++++ +DSPE 
Sbjct: 140 RFQTNPAGELASQLEDNRGPPP---------QFARRPSSKVASSSPGPTQSSHHEDSPEG 199

Query: 186 KNSSTASGSGSRRSLQKPQMSRHSSTRFTLERS----ESFTDLSDPARDGPRRLSAALAM 245
           + S T       RS ++PQ+SRH+STR     +    ++  D  D AR+G RRL+  LA 
Sbjct: 200 EGSPT-------RSSRQPQLSRHNSTRVEAASNTVSEDNSVDPFDVAREGTRRLAVVLAQ 259

Query: 246 ERSMSARETVVAQ--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRMSLMD 305
           ER +SARE V AQ        XXXXXXXXXXXXXXXXXXXXXXXXXX XXXX        
Sbjct: 260 ERQLSAREAVAAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXX 319

Query: 306 LLEETDRKMGLEGSRYRI-EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVCM 365
             EETDR+MGLEGSRY + EXXXXXXXXXXXXXXXXXXXXXXX             CVCM
Sbjct: 320 XXEETDRQMGLEGSRYAVGEXXXXXXXXXXXXXXXXXXXXXXXDVEENAGGIEHNCCVCM 379

Query: 366 VRYKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF 368
           VR+KGAAFIPCGHTFCRLCSRELWV RGNCPLCNGFILEILDIF
Sbjct: 380 VRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILEILDIF 402

[Close]
BLAST of Carg25524 vs. TrEMBL
Match: tr|A0A067FRX5|A0A067FRX5_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g017330mg PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.2e-45
Identity = 198/394 (50.25%), Postives = 240/394 (60.91%), Query Frame = 0 

Query: 14  MLAVGDGREFARGLTLNDVLTIHNRASPSPSPAVRLNGRTLLDIIRD-DVGISPVDNRER 73
           M AV D R+   GLTL+ +LT + R SP P+PA    GRTLLDIIRD D       +++R
Sbjct: 1   MSAVQDRRDPLAGLTLDAILT-NKRPSPPPAPA----GRTLLDIIRDEDPNGKNFGHKDR 60

Query: 74  KSWKFLRDRLRL----------------------------NLRSQILSPNSLRIPSFSSA 133
           KSWK  RDRLRL                            N RSQ++  +S+R  +  + 
Sbjct: 61  KSWKLFRDRLRLKRAGAAWTSSVRIPTSDIPIPSSSLSNSNPRSQLIRRSSVRFQTNPAG 120

Query: 134 DMXXXXXXXXXXXXXXXXXXXXRQISRRSSSRLSLNARPKSEAANSDDSPENKNSSTASG 193
           ++                     Q +RR SS+++ ++   +++++ +DSPE + S T   
Sbjct: 121 ELASQLEDNRGAPP---------QFARRPSSKVASSSPGPTQSSHHEDSPEGEGSPT--- 180

Query: 194 SGSRRSLQKPQMSRHSSTRFTLERS----ESFTDLSDPARDGPRRLSAALAMERSMSARE 253
               RS ++PQ+SRH+STR     +    ++  D  D AR+G RRL+  LA ER +SARE
Sbjct: 181 ----RSSRQPQLSRHNSTRVEAASNTVSEDNSVDPFDVAREGTRRLAVVLAQERQLSARE 240

Query: 254 TVVAQ------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRMSLMDLLEETDRKMG 313
            V AQ      XXXXXXXXXXXXXXXXXXXXXXXXXX XXXX          EETDR+MG
Sbjct: 241 AVAAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXEETDRQMG 300

Query: 314 LEGSRYRI-EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVCMVRYKGAAFIP 368
           LEGSRY + EXXXXXXXXXXXXXXXXXXXXXXX             CVCMVR+KGAAFIP
Sbjct: 301 LEGSRYAVGEXXXXXXXXXXXXXXXXXXXXXXXDVEENAGGIEHNCCVCMVRHKGAAFIP 360

[Close]
BLAST of Carg25524 vs. TrEMBL
Match: tr|A0A1R3J7J1|A0A1R3J7J1_COCAP (Zinc finger, RING-type OS=Corchorus capsularis OX=210143 GN=CCACVL1_07307 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 8.7e-44
Identity = 203/375 (54.13%), Postives = 234/375 (62.40%), Query Frame = 0 

Query: 1   MEGDRRRITLYDQMLAVGDGREFARGLTLNDVLTIHNRASPSPSPAVRLNGRTLLDIIRD 60
           ME   RR+TL++QM AV +GR    GLTL+ VL    R+ P P+     + RTLLDIIRD
Sbjct: 4   MESSNRRLTLFEQMSAVDNGRSALAGLTLDAVLGNPKRSQPPPT-----HNRTLLDIIRD 63

Query: 61  DVGISPVDNRERKSWKFLRDRLRLNLRSQILSPNSLRIPSFSSAD--------MXXXXXX 120
           D        +++K+WK  RD+LRL  R+     +S+ IP+    D               
Sbjct: 64  D-----GHTKDKKTWKTFRDKLRLK-RAGAAWTSSVPIPASDVNDYSNRSQRRTGTTFRL 123

Query: 121 XXXXXXXXXXXXXXRQISRRSSSRLSLNARPKSEAANSDDSPENKNSSTASGSGSRRSLQ 180
                          Q++RR+S RL     P    ++ DDS +    +T    G      
Sbjct: 124 DDGGGSDPPVANSRMQLARRTSVRLG----PNQAHSDRDDSVD----ATMPSDGPPSRSF 183

Query: 181 KPQMSRHSSTRFTLERSESFTDLSDPARDGPRRLSAALAMERSMSARETVVAQXXXXXXX 240
           +PQ +RH STR   +      D SD    G RRL  ALA ER +         XXXXXXX
Sbjct: 184 RPQFARHQSTRVPSDDD----DNSDGDSPGARRLGTALAEERQL-----XXXXXXXXXXX 243

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXPVRMSLMDLLEETDRKMGLEGSRYRIEXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXPVRMSLMDLLEETDR+MGL GSRY +    XXXXXX
Sbjct: 244 XXXXXXXXXXXXXXXXXXXXXXXXPVRMSLMDLLEETDRQMGLSGSRYTM--GDXXXXXX 303

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXCVCMVRYKGAAFIPCGHTFCRLCSRELWVSRGN 360
           XXXXXXXXXXXXXXXXXXXXXXX    CVCMVR+KGAAFIPCGHTFCRLCSRELWV RGN
Sbjct: 304 XXXXXXXXXXXXXXXXXXXXXXXEYTCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGN 348

Query: 361 CPLCNGFILEILDIF 368
           CPLCNGFILEILDIF
Sbjct: 364 CPLCNGFILEILDIF 348

The following BLAST results are available for this feature:
BLAST of Carg25524 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022991704.18.9e-12589.92E3 ubiquitin-protein ligase RNF8-like [Cucurbita maxima][more]
XP_023522866.17.6e-10072.12chromo domain-containing protein cec-1-like [Cucurbita pepo subsp. pepo][more]
XP_023004831.11.7e-9972.12nucleolin-like [Cucurbita maxima][more]
XP_022960262.12.9e-9971.85chromo domain-containing protein cec-1-like [Cucurbita moschata][more]
XP_022954164.16.4e-9982.21histone H3.v1-like [Cucurbita moschata][more]
BLAST of Carg25524 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G13100.24.5e-2249.55RING/U-box superfamily protein[more]
AT3G25030.11.0e-2136.45RING/U-box superfamily protein[more]
AT4G22250.13.6e-1981.25RING/U-box superfamily protein[more]
AT4G03965.11.8e-1877.08RING/U-box superfamily protein[more]
AT1G62370.12.0e-1768.75RING/U-box superfamily protein[more]
BLAST of Carg25524 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg25524 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C6E1|A0A1S3C6E1_CUCME3.2e-9173.44nucleolin-like OS=Cucumis melo OX=3656 GN=LOC103497559 PE=4 SV=1[more]
tr|A0A0A0K6R9|A0A0A0K6R9_CUCSA9.4e-9169.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G342770 PE=4 SV=1[more]
tr|V4T971|V4T971_9ROSI2.6e-4850.50Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10020442mg PE=4 ... [more]
tr|A0A067FRX5|A0A067FRX5_CITSI1.2e-4550.25Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g017330mg PE=4 SV=1[more]
tr|A0A1R3J7J1|A0A1R3J7J1_COCAP8.7e-4454.13Zinc finger, RING-type OS=Corchorus capsularis OX=210143 GN=CCACVL1_07307 PE=4 S... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25524-RACarg25524-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 275..302
NoneNo IPR availableCOILSCoilCoilcoord: 225..245
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 316..360
e-value: 7.5E-10
score: 38.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 281..303
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 282..297
NoneNo IPR availablePANTHERPTHR12183UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEINcoord: 51..367
NoneNo IPR availablePANTHERPTHR12183:SF20C3HC4 TYPE RING-FINGER PROTEINcoord: 51..367
NoneNo IPR availableCDDcd16449RING-HCcoord: 319..356
e-value: 7.21292E-11
score: 55.9365
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 318..363
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 319..356
e-value: 2.8E-5
score: 33.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 319..357
score: 11.132
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 277..363
e-value: 2.8E-12
score: 48.1