Carg25503 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTTTCATCTGAATTGCTCTCACAGAGCCTCCATTTCATCAACCCATTGTCGAATCCCACAATTCCTCAATCACATTCCAGCTCCTTCACTCGCAGATTTCCAAACAAAACCCATCTAAGAAATGGCGCATCTTCTGCTGAAACCAGGGAACCCCATGACCCGATTCTCGATAACAGAGAGACCCATTTGATGAAACTCCTCAACAGATCCTGCAGAGCTGGGAAGCACAACGAATCGCTATATTTTCTTGAAAGCGTGGTGAGTAAAGGCTTTAAACCTGATGTTGTTCTTTGTACGAAGCTCATTAAAGGGTTCTTTAATTCGAGGAATTTAAAGAAAGCTATGAGGGTTATGGAGATTTTGGAAACTTATGGTGACCCTGATGTTTATTCTTACAATGCTATGATTAGTGGGTTTAGTAAAGCTAACCAAATTGAATCTGCAAACAAGGTGTTCGATAGAATGCGCAGGAGGGGATTTTCCCCTGATGTTGTTACTTACAATATATTGATAGGGAGTTTGTGTAGTAGAGGGAAGCTTGAGCTTGCTTATGAAGTTCTTGATGAGCTTTTGAAGGATGGGTGTGAGCCATCTGTGATTACTTACACAATTCTTATAGAAGCAACCATTCTTGACGGTAGAATCAGGGAAGCTCTTAAGCTGTTAGATGAGCTTCTATCGAGGGGACTCCGTCCCGATCGGTACACGTACAATGCCATCATTAGGGGTATTTGTAAGGAAGGAATGGAGGATCAAGCTGTGGAATTCGTTAGGGATTTATTAGCTAGAGGGTGTAATCCAGATGTGATATCATACAACATTCTGCTGCGTTCTTTACTTAACAAAAGCAGGTGGGGAGATGGGGAGAGGCTTATGAAAGACATGGTTTCAAGTGGGTGTGAGCCAAACGTCGTTACTCATAGCATTTTGATTAGTTCGTTGTGTCGTGAAGGTCGAGTCGAGGAAGCCGTGAATGTGTTAAAGGTAATGAAGGAGAAAGGCTTAACCCCGGATGCATATAGCTATGATCCTTTGATATCTGCCTTCTGCAAAGAAGGCAGATTAGATTTAGCCATTGAGTATTTGCATAAAATGGTCTCTGATGGTTGCTTGCCTGATATTGTAAACTACAATTCAATCTTAGCTACTCTTTGTAAATTTGGTAGTGCTGATCTTGCTTTAGACATCTTCGAAAAGCTTGATGAAGTGGGGTGCCCTCCGAATGTGAGCTCCTACAACACAATGTTCAGTGCACTTTGGAGCTGTGGGAACAAGATCAAGGCTCTGGAGATGATATCAGAGATGATAGGAAAAGGGATCGACGCCGACGAGATAACGTACAATTCACTGATCTCGTGTTTGTGTCGGGATGGGTTGGTCGATGAGGCTATCGGATTGTTGGTAGACATGGAGGCTACCAGCTTCCAACCAACAGTGATAAGTTTCAACATTGTTCTTCTAGGATTGTGTAAAGCACACAGGGTTTTTGAAGGCATTGAGCTGCTAACAACAATGGTGGAGAAGGGTTGCCAACCGAACGAAACTAGTTACGTGTTGTTGATCGAGGGGATTGCGTATGCTGGGTGGCGAGCAGAGGCTATGGAGTTGGCTAACGCTCTGTACAGAATGGGAGTTATTTGTGAGGAATCATCCAAGCGTTTGAACAAGATATTTCCAATGCTTGAGGTTTATAAAGGGCTAAGTTTATGA ATGTTTTCATCTGAATTGCTCTCACAGAGCCTCCATTTCATCAACCCATTGTCGAATCCCACAATTCCTCAATCACATTCCAGCTCCTTCACTCGCAGATTTCCAAACAAAACCCATCTAAGAAATGGCGCATCTTCTGCTGAAACCAGGGAACCCCATGACCCGATTCTCGATAACAGAGAGACCCATTTGATGAAACTCCTCAACAGATCCTGCAGAGCTGGGAAGCACAACGAATCGCTATATTTTCTTGAAAGCGTGGTGAGTAAAGGCTTTAAACCTGATGTTGTTCTTTGTACGAAGCTCATTAAAGGGTTCTTTAATTCGAGGAATTTAAAGAAAGCTATGAGGGTTATGGAGATTTTGGAAACTTATGGTGACCCTGATGTTTATTCTTACAATGCTATGATTAGTGGGTTTAGTAAAGCTAACCAAATTGAATCTGCAAACAAGGTGTTCGATAGAATGCGCAGGAGGGGATTTTCCCCTGATGTTGTTACTTACAATATATTGATAGGGAGTTTGTGTAGTAGAGGGAAGCTTGAGCTTGCTTATGAAGTTCTTGATGAGCTTTTGAAGGATGGGTGTGAGCCATCTGTGATTACTTACACAATTCTTATAGAAGCAACCATTCTTGACGGTAGAATCAGGGAAGCTCTTAAGCTGTTAGATGAGCTTCTATCGAGGGGACTCCGTCCCGATCGGTACACGTACAATGCCATCATTAGGGGTATTTGTAAGGAAGGAATGGAGGATCAAGCTGTGGAATTCGTTAGGGATTTATTAGCTAGAGGGTGTAATCCAGATGTGATATCATACAACATTCTGCTGCGTTCTTTACTTAACAAAAGCAGGTGGGGAGATGGGGAGAGGCTTATGAAAGACATGGTTTCAAGTGGGTGTGAGCCAAACGTCGTTACTCATAGCATTTTGATTAGTTCGTTGTGTCGTGAAGGTCGAGTCGAGGAAGCCGTGAATGTGTTAAAGGTAATGAAGGAGAAAGGCTTAACCCCGGATGCATATAGCTATGATCCTTTGATATCTGCCTTCTGCAAAGAAGGCAGATTAGATTTAGCCATTGAGTATTTGCATAAAATGGTCTCTGATGGTTGCTTGCCTGATATTGTAAACTACAATTCAATCTTAGCTACTCTTTGTAAATTTGGTAGTGCTGATCTTGCTTTAGACATCTTCGAAAAGCTTGATGAAGTGGGGTGCCCTCCGAATGTGAGCTCCTACAACACAATGTTCAGTGCACTTTGGAGCTGTGGGAACAAGATCAAGGCTCTGGAGATGATATCAGAGATGATAGGAAAAGGGATCGACGCCGACGAGATAACGTACAATTCACTGATCTCGTGTTTGTGTCGGGATGGGTTGGTCGATGAGGCTATCGGATTGTTGGTAGACATGGAGGCTACCAGCTTCCAACCAACAGTGATAAGTTTCAACATTGTTCTTCTAGGATTGTGTAAAGCACACAGGGTTTTTGAAGGCATTGAGCTGCTAACAACAATGGTGGAGAAGGGTTGCCAACCGAACGAAACTAGTTACGTGTTGTTGATCGAGGGGATTGCGTATGCTGGGTGGCGAGCAGAGGCTATGGAGTTGGCTAACGCTCTGTACAGAATGGGAGTTATTTGTGAGGAATCATCCAAGCGTTTGAACAAGATATTTCCAATGCTTGAGGTTTATAAAGGGCTAAGTTTATGA ATGTTTTCATCTGAATTGCTCTCACAGAGCCTCCATTTCATCAACCCATTGTCGAATCCCACAATTCCTCAATCACATTCCAGCTCCTTCACTCGCAGATTTCCAAACAAAACCCATCTAAGAAATGGCGCATCTTCTGCTGAAACCAGGGAACCCCATGACCCGATTCTCGATAACAGAGAGACCCATTTGATGAAACTCCTCAACAGATCCTGCAGAGCTGGGAAGCACAACGAATCGCTATATTTTCTTGAAAGCGTGGTGAGTAAAGGCTTTAAACCTGATGTTGTTCTTTGTACGAAGCTCATTAAAGGGTTCTTTAATTCGAGGAATTTAAAGAAAGCTATGAGGGTTATGGAGATTTTGGAAACTTATGGTGACCCTGATGTTTATTCTTACAATGCTATGATTAGTGGGTTTAGTAAAGCTAACCAAATTGAATCTGCAAACAAGGTGTTCGATAGAATGCGCAGGAGGGGATTTTCCCCTGATGTTGTTACTTACAATATATTGATAGGGAGTTTGTGTAGTAGAGGGAAGCTTGAGCTTGCTTATGAAGTTCTTGATGAGCTTTTGAAGGATGGGTGTGAGCCATCTGTGATTACTTACACAATTCTTATAGAAGCAACCATTCTTGACGGTAGAATCAGGGAAGCTCTTAAGCTGTTAGATGAGCTTCTATCGAGGGGACTCCGTCCCGATCGGTACACGTACAATGCCATCATTAGGGGTATTTGTAAGGAAGGAATGGAGGATCAAGCTGTGGAATTCGTTAGGGATTTATTAGCTAGAGGGTGTAATCCAGATGTGATATCATACAACATTCTGCTGCGTTCTTTACTTAACAAAAGCAGGTGGGGAGATGGGGAGAGGCTTATGAAAGACATGGTTTCAAGTGGGTGTGAGCCAAACGTCGTTACTCATAGCATTTTGATTAGTTCGTTGTGTCGTGAAGGTCGAGTCGAGGAAGCCGTGAATGTGTTAAAGGTAATGAAGGAGAAAGGCTTAACCCCGGATGCATATAGCTATGATCCTTTGATATCTGCCTTCTGCAAAGAAGGCAGATTAGATTTAGCCATTGAGTATTTGCATAAAATGGTCTCTGATGGTTGCTTGCCTGATATTGTAAACTACAATTCAATCTTAGCTACTCTTTGTAAATTTGGTAGTGCTGATCTTGCTTTAGACATCTTCGAAAAGCTTGATGAAGTGGGGTGCCCTCCGAATGTGAGCTCCTACAACACAATGTTCAGTGCACTTTGGAGCTGTGGGAACAAGATCAAGGCTCTGGAGATGATATCAGAGATGATAGGAAAAGGGATCGACGCCGACGAGATAACGTACAATTCACTGATCTCGTGTTTGTGTCGGGATGGGTTGGTCGATGAGGCTATCGGATTGTTGGTAGACATGGAGGCTACCAGCTTCCAACCAACAGTGATAAGTTTCAACATTGTTCTTCTAGGATTGTGTAAAGCACACAGGGTTTTTGAAGGCATTGAGCTGCTAACAACAATGGTGGAGAAGGGTTGCCAACCGAACGAAACTAGTTACGTGTTGTTGATCGAGGGGATTGCGTATGCTGGGTGGCGAGCAGAGGCTATGGAGTTGGCTAACGCTCTGTACAGAATGGGAGTTATTTGTGAGGAATCATCCAAGCGTTTGAACAAGATATTTCCAATGCTTGAGGTTTATAAAGGGCTAAGTTTATGA MFSSELLSQSLHFINPLSNPTIPQSHSSSFTRRFPNKTHLRNGASSAETREPHDPILDNRETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGFSPDVVTYNILIGSLCSRGKLELAYEVLDELLKDGCEPSVITYTILIEATILDGRIREALKLLDELLSRGLRPDRYTYNAIIRGICKEGMEDQAVEFVRDLLARGCNPDVISYNILLRSLLNKSRWGDGERLMKDMVSSGCEPNVVTHSILISSLCREGRVEEAVNVLKVMKEKGLTPDAYSYDPLISAFCKEGRLDLAIEYLHKMVSDGCLPDIVNYNSILATLCKFGSADLALDIFEKLDEVGCPPNVSSYNTMFSALWSCGNKIKALEMISEMIGKGIDADEITYNSLISCLCRDGLVDEAIGLLVDMEATSFQPTVISFNIVLLGLCKAHRVFEGIELLTTMVEKGCQPNETSYVLLIEGIAYAGWRAEAMELANALYRMGVICEESSKRLNKIFPMLEVYKGLSL
BLAST of Carg25503 vs. NCBI nr
Match: XP_022960811.1 (pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucurbita moschata]) HSP 1 Score: 323.6 bits (828), Expect = 1.4e-84 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
BLAST of Carg25503 vs. NCBI nr
Match: XP_023515375.1 (pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 322.0 bits (824), Expect = 4.0e-84 Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 0
BLAST of Carg25503 vs. NCBI nr
Match: XP_022988060.1 (pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucurbita maxima]) HSP 1 Score: 321.2 bits (822), Expect = 6.9e-84 Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0
BLAST of Carg25503 vs. NCBI nr
Match: XP_008443759.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucumis melo]) HSP 1 Score: 278.5 bits (711), Expect = 5.1e-71 Identity = 141/162 (87.04%), Postives = 148/162 (91.36%), Query Frame = 0
BLAST of Carg25503 vs. NCBI nr
Match: XP_004142590.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucumis sativus] >KGN66736.1 hypothetical protein Csa_1G666460 [Cucumis sativus]) HSP 1 Score: 272.3 bits (695), Expect = 3.7e-69 Identity = 139/162 (85.80%), Postives = 144/162 (88.89%), Query Frame = 0
BLAST of Carg25503 vs. TAIR10
Match: AT3G04760.1 (Pentatricopeptide repeat (PPR-like) superfamily protein) HSP 1 Score: 95.9 bits (237), Expect = 8.6e-20 Identity = 44/76 (57.89%), Postives = 59/76 (77.63%), Query Frame = 0
BLAST of Carg25503 vs. TAIR10
Match: AT2G39620.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 51.6 bits (122), Expect = 1.9e-06 Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 0
BLAST of Carg25503 vs. TAIR10
Match: AT1G20300.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 48.9 bits (115), Expect = 1.2e-05 Identity = 25/91 (27.47%), Postives = 44/91 (48.35%), Query Frame = 0
BLAST of Carg25503 vs. TAIR10
Match: AT2G01740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 47.0 bits (110), Expect = 4.6e-05 Identity = 31/105 (29.52%), Postives = 53/105 (50.48%), Query Frame = 0
BLAST of Carg25503 vs. TAIR10
Match: AT3G09650.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 45.8 bits (107), Expect = 1.0e-04 Identity = 27/86 (31.40%), Postives = 43/86 (50.00%), Query Frame = 0
BLAST of Carg25503 vs. Swiss-Prot
Match: sp|Q9SR00|PP213_ARATH (Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g04760 PE=2 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 1.5e-18 Identity = 44/76 (57.89%), Postives = 59/76 (77.63%), Query Frame = 0
BLAST of Carg25503 vs. Swiss-Prot
Match: sp|O80647|PP195_ARATH (Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E33 PE=3 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 3.3e-05 Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 0
BLAST of Carg25503 vs. Swiss-Prot
Match: sp|Q9LN22|PPR54_ARATH (Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g20300 PE=2 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 2.2e-04 Identity = 25/91 (27.47%), Postives = 44/91 (48.35%), Query Frame = 0
BLAST of Carg25503 vs. Swiss-Prot
Match: sp|Q9ZUA2|PP141_ARATH (Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana OX=3702 GN=At2g01740 PE=3 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 8.2e-04 Identity = 31/105 (29.52%), Postives = 53/105 (50.48%), Query Frame = 0
BLAST of Carg25503 vs. TrEMBL
Match: tr|A0A1S3B9K3|A0A1S3B9K3_CUCME (pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487275 PE=4 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 3.4e-71 Identity = 141/162 (87.04%), Postives = 148/162 (91.36%), Query Frame = 0
BLAST of Carg25503 vs. TrEMBL
Match: tr|A0A0A0M3C6|A0A0A0M3C6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G666460 PE=4 SV=1) HSP 1 Score: 272.3 bits (695), Expect = 2.4e-69 Identity = 139/162 (85.80%), Postives = 144/162 (88.89%), Query Frame = 0
BLAST of Carg25503 vs. TrEMBL
Match: tr|A0A061F8R7|A0A061F8R7_THECC (Pentatricopeptide repeat (PPR-like) superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_026185 PE=4 SV=1) HSP 1 Score: 176.8 bits (447), Expect = 1.4e-40 Identity = 94/170 (55.29%), Postives = 120/170 (70.59%), Query Frame = 0
BLAST of Carg25503 vs. TrEMBL
Match: tr|A0A1U8LF97|A0A1U8LF97_GOSHI (pentatricopeptide repeat-containing protein At3g04760, chloroplastic-like OS=Gossypium hirsutum OX=3635 GN=LOC107926841 PE=4 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 4.0e-40 Identity = 91/171 (53.22%), Postives = 121/171 (70.76%), Query Frame = 0
BLAST of Carg25503 vs. TrEMBL
Match: tr|A0A0D2TML8|A0A0D2TML8_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G275900 PE=4 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 4.0e-40 Identity = 91/171 (53.22%), Postives = 121/171 (70.76%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |