Carg25503 (gene) Silver-seed gourd

NameCarg25503
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionpentatricopeptide repeat-containing protein At3g04760, chloroplastic
LocationCucurbita_argyrosperma_scaffold_203 : 11120 .. 12832 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCATCTGAATTGCTCTCACAGAGCCTCCATTTCATCAACCCATTGTCGAATCCCACAATTCCTCAATCACATTCCAGCTCCTTCACTCGCAGATTTCCAAACAAAACCCATCTAAGAAATGGCGCATCTTCTGCTGAAACCAGGGAACCCCATGACCCGATTCTCGATAACAGAGAGACCCATTTGATGAAACTCCTCAACAGATCCTGCAGAGCTGGGAAGCACAACGAATCGCTATATTTTCTTGAAAGCGTGGTGAGTAAAGGCTTTAAACCTGATGTTGTTCTTTGTACGAAGCTCATTAAAGGGTTCTTTAATTCGAGGAATTTAAAGAAAGCTATGAGGGTTATGGAGATTTTGGAAACTTATGGTGACCCTGATGTTTATTCTTACAATGCTATGATTAGTGGGTTTAGTAAAGCTAACCAAATTGAATCTGCAAACAAGGTGTTCGATAGAATGCGCAGGAGGGGATTTTCCCCTGATGTTGTTACTTACAATATATTGATAGGGAGTTTGTGTAGTAGAGGGAAGCTTGAGCTTGCTTATGAAGTTCTTGATGAGCTTTTGAAGGATGGGTGTGAGCCATCTGTGATTACTTACACAATTCTTATAGAAGCAACCATTCTTGACGGTAGAATCAGGGAAGCTCTTAAGCTGTTAGATGAGCTTCTATCGAGGGGACTCCGTCCCGATCGGTACACGTACAATGCCATCATTAGGGGTATTTGTAAGGAAGGAATGGAGGATCAAGCTGTGGAATTCGTTAGGGATTTATTAGCTAGAGGGTGTAATCCAGATGTGATATCATACAACATTCTGCTGCGTTCTTTACTTAACAAAAGCAGGTGGGGAGATGGGGAGAGGCTTATGAAAGACATGGTTTCAAGTGGGTGTGAGCCAAACGTCGTTACTCATAGCATTTTGATTAGTTCGTTGTGTCGTGAAGGTCGAGTCGAGGAAGCCGTGAATGTGTTAAAGGTAATGAAGGAGAAAGGCTTAACCCCGGATGCATATAGCTATGATCCTTTGATATCTGCCTTCTGCAAAGAAGGCAGATTAGATTTAGCCATTGAGTATTTGCATAAAATGGTCTCTGATGGTTGCTTGCCTGATATTGTAAACTACAATTCAATCTTAGCTACTCTTTGTAAATTTGGTAGTGCTGATCTTGCTTTAGACATCTTCGAAAAGCTTGATGAAGTGGGGTGCCCTCCGAATGTGAGCTCCTACAACACAATGTTCAGTGCACTTTGGAGCTGTGGGAACAAGATCAAGGCTCTGGAGATGATATCAGAGATGATAGGAAAAGGGATCGACGCCGACGAGATAACGTACAATTCACTGATCTCGTGTTTGTGTCGGGATGGGTTGGTCGATGAGGCTATCGGATTGTTGGTAGACATGGAGGCTACCAGCTTCCAACCAACAGTGATAAGTTTCAACATTGTTCTTCTAGGATTGTGTAAAGCACACAGGGTTTTTGAAGGCATTGAGCTGCTAACAACAATGGTGGAGAAGGGTTGCCAACCGAACGAAACTAGTTACGTGTTGTTGATCGAGGGGATTGCGTATGCTGGGTGGCGAGCAGAGGCTATGGAGTTGGCTAACGCTCTGTACAGAATGGGAGTTATTTGTGAGGAATCATCCAAGCGTTTGAACAAGATATTTCCAATGCTTGAGGTTTATAAAGGGCTAAGTTTATGA

mRNA sequence

ATGTTTTCATCTGAATTGCTCTCACAGAGCCTCCATTTCATCAACCCATTGTCGAATCCCACAATTCCTCAATCACATTCCAGCTCCTTCACTCGCAGATTTCCAAACAAAACCCATCTAAGAAATGGCGCATCTTCTGCTGAAACCAGGGAACCCCATGACCCGATTCTCGATAACAGAGAGACCCATTTGATGAAACTCCTCAACAGATCCTGCAGAGCTGGGAAGCACAACGAATCGCTATATTTTCTTGAAAGCGTGGTGAGTAAAGGCTTTAAACCTGATGTTGTTCTTTGTACGAAGCTCATTAAAGGGTTCTTTAATTCGAGGAATTTAAAGAAAGCTATGAGGGTTATGGAGATTTTGGAAACTTATGGTGACCCTGATGTTTATTCTTACAATGCTATGATTAGTGGGTTTAGTAAAGCTAACCAAATTGAATCTGCAAACAAGGTGTTCGATAGAATGCGCAGGAGGGGATTTTCCCCTGATGTTGTTACTTACAATATATTGATAGGGAGTTTGTGTAGTAGAGGGAAGCTTGAGCTTGCTTATGAAGTTCTTGATGAGCTTTTGAAGGATGGGTGTGAGCCATCTGTGATTACTTACACAATTCTTATAGAAGCAACCATTCTTGACGGTAGAATCAGGGAAGCTCTTAAGCTGTTAGATGAGCTTCTATCGAGGGGACTCCGTCCCGATCGGTACACGTACAATGCCATCATTAGGGGTATTTGTAAGGAAGGAATGGAGGATCAAGCTGTGGAATTCGTTAGGGATTTATTAGCTAGAGGGTGTAATCCAGATGTGATATCATACAACATTCTGCTGCGTTCTTTACTTAACAAAAGCAGGTGGGGAGATGGGGAGAGGCTTATGAAAGACATGGTTTCAAGTGGGTGTGAGCCAAACGTCGTTACTCATAGCATTTTGATTAGTTCGTTGTGTCGTGAAGGTCGAGTCGAGGAAGCCGTGAATGTGTTAAAGGTAATGAAGGAGAAAGGCTTAACCCCGGATGCATATAGCTATGATCCTTTGATATCTGCCTTCTGCAAAGAAGGCAGATTAGATTTAGCCATTGAGTATTTGCATAAAATGGTCTCTGATGGTTGCTTGCCTGATATTGTAAACTACAATTCAATCTTAGCTACTCTTTGTAAATTTGGTAGTGCTGATCTTGCTTTAGACATCTTCGAAAAGCTTGATGAAGTGGGGTGCCCTCCGAATGTGAGCTCCTACAACACAATGTTCAGTGCACTTTGGAGCTGTGGGAACAAGATCAAGGCTCTGGAGATGATATCAGAGATGATAGGAAAAGGGATCGACGCCGACGAGATAACGTACAATTCACTGATCTCGTGTTTGTGTCGGGATGGGTTGGTCGATGAGGCTATCGGATTGTTGGTAGACATGGAGGCTACCAGCTTCCAACCAACAGTGATAAGTTTCAACATTGTTCTTCTAGGATTGTGTAAAGCACACAGGGTTTTTGAAGGCATTGAGCTGCTAACAACAATGGTGGAGAAGGGTTGCCAACCGAACGAAACTAGTTACGTGTTGTTGATCGAGGGGATTGCGTATGCTGGGTGGCGAGCAGAGGCTATGGAGTTGGCTAACGCTCTGTACAGAATGGGAGTTATTTGTGAGGAATCATCCAAGCGTTTGAACAAGATATTTCCAATGCTTGAGGTTTATAAAGGGCTAAGTTTATGA

Coding sequence (CDS)

ATGTTTTCATCTGAATTGCTCTCACAGAGCCTCCATTTCATCAACCCATTGTCGAATCCCACAATTCCTCAATCACATTCCAGCTCCTTCACTCGCAGATTTCCAAACAAAACCCATCTAAGAAATGGCGCATCTTCTGCTGAAACCAGGGAACCCCATGACCCGATTCTCGATAACAGAGAGACCCATTTGATGAAACTCCTCAACAGATCCTGCAGAGCTGGGAAGCACAACGAATCGCTATATTTTCTTGAAAGCGTGGTGAGTAAAGGCTTTAAACCTGATGTTGTTCTTTGTACGAAGCTCATTAAAGGGTTCTTTAATTCGAGGAATTTAAAGAAAGCTATGAGGGTTATGGAGATTTTGGAAACTTATGGTGACCCTGATGTTTATTCTTACAATGCTATGATTAGTGGGTTTAGTAAAGCTAACCAAATTGAATCTGCAAACAAGGTGTTCGATAGAATGCGCAGGAGGGGATTTTCCCCTGATGTTGTTACTTACAATATATTGATAGGGAGTTTGTGTAGTAGAGGGAAGCTTGAGCTTGCTTATGAAGTTCTTGATGAGCTTTTGAAGGATGGGTGTGAGCCATCTGTGATTACTTACACAATTCTTATAGAAGCAACCATTCTTGACGGTAGAATCAGGGAAGCTCTTAAGCTGTTAGATGAGCTTCTATCGAGGGGACTCCGTCCCGATCGGTACACGTACAATGCCATCATTAGGGGTATTTGTAAGGAAGGAATGGAGGATCAAGCTGTGGAATTCGTTAGGGATTTATTAGCTAGAGGGTGTAATCCAGATGTGATATCATACAACATTCTGCTGCGTTCTTTACTTAACAAAAGCAGGTGGGGAGATGGGGAGAGGCTTATGAAAGACATGGTTTCAAGTGGGTGTGAGCCAAACGTCGTTACTCATAGCATTTTGATTAGTTCGTTGTGTCGTGAAGGTCGAGTCGAGGAAGCCGTGAATGTGTTAAAGGTAATGAAGGAGAAAGGCTTAACCCCGGATGCATATAGCTATGATCCTTTGATATCTGCCTTCTGCAAAGAAGGCAGATTAGATTTAGCCATTGAGTATTTGCATAAAATGGTCTCTGATGGTTGCTTGCCTGATATTGTAAACTACAATTCAATCTTAGCTACTCTTTGTAAATTTGGTAGTGCTGATCTTGCTTTAGACATCTTCGAAAAGCTTGATGAAGTGGGGTGCCCTCCGAATGTGAGCTCCTACAACACAATGTTCAGTGCACTTTGGAGCTGTGGGAACAAGATCAAGGCTCTGGAGATGATATCAGAGATGATAGGAAAAGGGATCGACGCCGACGAGATAACGTACAATTCACTGATCTCGTGTTTGTGTCGGGATGGGTTGGTCGATGAGGCTATCGGATTGTTGGTAGACATGGAGGCTACCAGCTTCCAACCAACAGTGATAAGTTTCAACATTGTTCTTCTAGGATTGTGTAAAGCACACAGGGTTTTTGAAGGCATTGAGCTGCTAACAACAATGGTGGAGAAGGGTTGCCAACCGAACGAAACTAGTTACGTGTTGTTGATCGAGGGGATTGCGTATGCTGGGTGGCGAGCAGAGGCTATGGAGTTGGCTAACGCTCTGTACAGAATGGGAGTTATTTGTGAGGAATCATCCAAGCGTTTGAACAAGATATTTCCAATGCTTGAGGTTTATAAAGGGCTAAGTTTATGA

Protein sequence

MFSSELLSQSLHFINPLSNPTIPQSHSSSFTRRFPNKTHLRNGASSAETREPHDPILDNRETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGFSPDVVTYNILIGSLCSRGKLELAYEVLDELLKDGCEPSVITYTILIEATILDGRIREALKLLDELLSRGLRPDRYTYNAIIRGICKEGMEDQAVEFVRDLLARGCNPDVISYNILLRSLLNKSRWGDGERLMKDMVSSGCEPNVVTHSILISSLCREGRVEEAVNVLKVMKEKGLTPDAYSYDPLISAFCKEGRLDLAIEYLHKMVSDGCLPDIVNYNSILATLCKFGSADLALDIFEKLDEVGCPPNVSSYNTMFSALWSCGNKIKALEMISEMIGKGIDADEITYNSLISCLCRDGLVDEAIGLLVDMEATSFQPTVISFNIVLLGLCKAHRVFEGIELLTTMVEKGCQPNETSYVLLIEGIAYAGWRAEAMELANALYRMGVICEESSKRLNKIFPMLEVYKGLSL
BLAST of Carg25503 vs. NCBI nr
Match: XP_022960811.1 (pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucurbita moschata])

HSP 1 Score: 323.6 bits (828), Expect = 1.4e-84
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0

Query: 1   MFSSELLSQSLHFINPLSNPTIPQSHSSSFTRRFPNKTHLRNGASSAETREPHDPILDNR 60
           MFSSELLSQSLHFINPLSNPTIPQSHSSSFTRRFPNKTHLRNGASSAETREPHDPILDNR
Sbjct: 1   MFSSELLSQSLHFINPLSNPTIPQSHSSSFTRRFPNKTHLRNGASSAETREPHDPILDNR 60

Query: 61  ETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVME 120
           ETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVME
Sbjct: 61  ETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVME 120

Query: 121 ILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGF 162
           ILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGF
Sbjct: 121 ILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGF 161

BLAST of Carg25503 vs. NCBI nr
Match: XP_023515375.1 (pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 322.0 bits (824), Expect = 4.0e-84
Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 0

Query: 1   MFSSELLSQSLHFINPLSNPTIPQSHSSSFTRRFPNKTHLRNGASSAETREPHDPILDNR 60
           MFSSELLSQSLHFINPLSNPTIPQSHSSSFTRRFPNKTHLRNGASSAETREPHDPILDNR
Sbjct: 1   MFSSELLSQSLHFINPLSNPTIPQSHSSSFTRRFPNKTHLRNGASSAETREPHDPILDNR 60

Query: 61  ETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVME 120
           ETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVME
Sbjct: 61  ETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVME 120

Query: 121 ILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGF 162
           ILETYGDPDVYSYNAMISGFSKANQIESAN+VFDRMRRRGF
Sbjct: 121 ILETYGDPDVYSYNAMISGFSKANQIESANEVFDRMRRRGF 161

BLAST of Carg25503 vs. NCBI nr
Match: XP_022988060.1 (pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucurbita maxima])

HSP 1 Score: 321.2 bits (822), Expect = 6.9e-84
Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0

Query: 1   MFSSELLSQSLHFINPLSNPTIPQSHSSSFTRRFPNKTHLRNGASSAETREPHDPILDNR 60
           MFSSELLSQSLHFINPLSNPTIPQSHSSSFTRRFPNKTHLRNGASSAETREPHDPILDNR
Sbjct: 1   MFSSELLSQSLHFINPLSNPTIPQSHSSSFTRRFPNKTHLRNGASSAETREPHDPILDNR 60

Query: 61  ETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVME 120
           ETHLMKLLNRSCRAGKHNESLYFLESVVSKG KPDVVLCTKLIKGFFNSRNLKKAMRVME
Sbjct: 61  ETHLMKLLNRSCRAGKHNESLYFLESVVSKGLKPDVVLCTKLIKGFFNSRNLKKAMRVME 120

Query: 121 ILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGF 162
           ILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGF
Sbjct: 121 ILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGF 161

BLAST of Carg25503 vs. NCBI nr
Match: XP_008443759.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucumis melo])

HSP 1 Score: 278.5 bits (711), Expect = 5.1e-71
Identity = 141/162 (87.04%), Postives = 148/162 (91.36%), Query Frame = 0

Query: 1   MFSSELLSQSLHFINPLSNPTIPQSHSSSF-TRRFPNKTHLRNGASSAETREPHDPILDN 60
           MFSSE L QSLHF NPLS PTIPQSHS S  TRRF NKT+LRN  SSAE+R+PH P LDN
Sbjct: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN 60

Query: 61  RETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVM 120
           R+ HLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKA+RVM
Sbjct: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVM 120

Query: 121 EILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGF 162
           EILETYGDPDVYSYNAMISGFSKANQI+SAN+VFDRMR RGF
Sbjct: 121 EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 162

BLAST of Carg25503 vs. NCBI nr
Match: XP_004142590.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucumis sativus] >KGN66736.1 hypothetical protein Csa_1G666460 [Cucumis sativus])

HSP 1 Score: 272.3 bits (695), Expect = 3.7e-69
Identity = 139/162 (85.80%), Postives = 144/162 (88.89%), Query Frame = 0

Query: 1   MFSSELLSQSLHFINPLSNPTIPQSHSSSFTR-RFPNKTHLRNGASSAETREPHDPILDN 60
           MFSSE L QSLHF NPL+ PTIPQS S S    RF NKTHLRN  SSAE R+PH P LDN
Sbjct: 1   MFSSEFLPQSLHFTNPLAKPTIPQSRSDSIPACRFSNKTHLRNVTSSAEFRQPHFPNLDN 60

Query: 61  RETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVM 120
           R+ HLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVM
Sbjct: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVM 120

Query: 121 EILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGF 162
           EILETYGDPDVYSYNAMISGFSKANQI+SAN+VFDRMR RGF
Sbjct: 121 EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 162

BLAST of Carg25503 vs. TAIR10
Match: AT3G04760.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 95.9 bits (237), Expect = 8.6e-20
Identity = 44/76 (57.89%), Postives = 59/76 (77.63%), Query Frame = 0

Query: 48  ETREPHDPILDNRETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFF 107
           E R+ H   L  R+T ++K+ +RSCR+G + ESL+ LE++V KG+ PDV+LCTKLIKGFF
Sbjct: 76  ERRQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFF 135

Query: 108 NSRNLKKAMRVMEILE 124
             RN+ KA+RVMEILE
Sbjct: 136 TLRNIPKAVRVMEILE 151

BLAST of Carg25503 vs. TAIR10
Match: AT2G39620.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 1.9e-06
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 0

Query: 73  RAGKHNESL-YFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG-DPDV 132
           RAG H E+L +F      KG  PD    T  +K    S + KK +R+ +++   G + DV
Sbjct: 76  RAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDV 135

Query: 133 YSYNAMISGFSKANQIESANKVFDRM 157
           Y   A++  + KA  + SA +VFD+M
Sbjct: 136 YIGTALVEMYCKARDLVSARQVFDKM 161

BLAST of Carg25503 vs. TAIR10
Match: AT1G20300.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.2e-05
Identity = 25/91 (27.47%), Postives = 44/91 (48.35%), Query Frame = 0

Query: 67  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 126
           L+ R  RAG  +E+++    +   G  PD +  + +I      R   +A    + L+   
Sbjct: 192 LIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRF 251

Query: 127 DPDVYSYNAMISGFSKANQIESANKVFDRMR 158
           +PDV  Y  ++ G+ +A +I  A KVF  M+
Sbjct: 252 EPDVIVYTNLVRGWCRAGEISEAEKVFKEMK 282

BLAST of Carg25503 vs. TAIR10
Match: AT2G01740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 4.6e-05
Identity = 31/105 (29.52%), Postives = 53/105 (50.48%), Query Frame = 0

Query: 54  DPILDNRETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLK 113
           DP   N+  H+ +L+N +C       SL FL  +VS+G+ P       ++        +K
Sbjct: 20  DPFTCNK--HIHQLINSNCGI----LSLKFLAYLVSRGYTPHRSSFNSVVSFVCKLGQVK 79

Query: 114 KAMRVMEILETYG-DPDVYSYNAMISGFSKANQIESANKVFDRMR 158
            A  ++  +  +G +PDV SYN++I G  +   I SA+ V + +R
Sbjct: 80  FAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLR 118

BLAST of Carg25503 vs. TAIR10
Match: AT3G09650.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 45.8 bits (107), Expect = 1.0e-04
Identity = 27/86 (31.40%), Postives = 43/86 (50.00%), Query Frame = 0

Query: 80  SLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYGDP----DVYSYNA 139
           +L F   + ++G  P  +  T L+K F  S   K A RV +  E   DP    D+ ++N 
Sbjct: 542 ALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFD--EMMNDPRVKVDLIAWNM 601

Query: 140 MISGFSKANQIESANKVFDRMRRRGF 162
           ++ G+ +   IE A +V  RM+  GF
Sbjct: 602 LVEGYCRLGLIEDAQRVVSRMKENGF 625

BLAST of Carg25503 vs. Swiss-Prot
Match: sp|Q9SR00|PP213_ARATH (Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g04760 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-18
Identity = 44/76 (57.89%), Postives = 59/76 (77.63%), Query Frame = 0

Query: 48  ETREPHDPILDNRETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFF 107
           E R+ H   L  R+T ++K+ +RSCR+G + ESL+ LE++V KG+ PDV+LCTKLIKGFF
Sbjct: 76  ERRQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFF 135

Query: 108 NSRNLKKAMRVMEILE 124
             RN+ KA+RVMEILE
Sbjct: 136 TLRNIPKAVRVMEILE 151

BLAST of Carg25503 vs. Swiss-Prot
Match: sp|O80647|PP195_ARATH (Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E33 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.3e-05
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 0

Query: 73  RAGKHNESL-YFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG-DPDV 132
           RAG H E+L +F      KG  PD    T  +K    S + KK +R+ +++   G + DV
Sbjct: 76  RAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDV 135

Query: 133 YSYNAMISGFSKANQIESANKVFDRM 157
           Y   A++  + KA  + SA +VFD+M
Sbjct: 136 YIGTALVEMYCKARDLVSARQVFDKM 161

BLAST of Carg25503 vs. Swiss-Prot
Match: sp|Q9LN22|PPR54_ARATH (Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g20300 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.2e-04
Identity = 25/91 (27.47%), Postives = 44/91 (48.35%), Query Frame = 0

Query: 67  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 126
           L+ R  RAG  +E+++    +   G  PD +  + +I      R   +A    + L+   
Sbjct: 192 LIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRF 251

Query: 127 DPDVYSYNAMISGFSKANQIESANKVFDRMR 158
           +PDV  Y  ++ G+ +A +I  A KVF  M+
Sbjct: 252 EPDVIVYTNLVRGWCRAGEISEAEKVFKEMK 282

BLAST of Carg25503 vs. Swiss-Prot
Match: sp|Q9ZUA2|PP141_ARATH (Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana OX=3702 GN=At2g01740 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 8.2e-04
Identity = 31/105 (29.52%), Postives = 53/105 (50.48%), Query Frame = 0

Query: 54  DPILDNRETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLK 113
           DP   N+  H+ +L+N +C       SL FL  +VS+G+ P       ++        +K
Sbjct: 20  DPFTCNK--HIHQLINSNCGI----LSLKFLAYLVSRGYTPHRSSFNSVVSFVCKLGQVK 79

Query: 114 KAMRVMEILETYG-DPDVYSYNAMISGFSKANQIESANKVFDRMR 158
            A  ++  +  +G +PDV SYN++I G  +   I SA+ V + +R
Sbjct: 80  FAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLR 118

BLAST of Carg25503 vs. TrEMBL
Match: tr|A0A1S3B9K3|A0A1S3B9K3_CUCME (pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487275 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 3.4e-71
Identity = 141/162 (87.04%), Postives = 148/162 (91.36%), Query Frame = 0

Query: 1   MFSSELLSQSLHFINPLSNPTIPQSHSSSF-TRRFPNKTHLRNGASSAETREPHDPILDN 60
           MFSSE L QSLHF NPLS PTIPQSHS S  TRRF NKT+LRN  SSAE+R+PH P LDN
Sbjct: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN 60

Query: 61  RETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVM 120
           R+ HLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKA+RVM
Sbjct: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVM 120

Query: 121 EILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGF 162
           EILETYGDPDVYSYNAMISGFSKANQI+SAN+VFDRMR RGF
Sbjct: 121 EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 162

BLAST of Carg25503 vs. TrEMBL
Match: tr|A0A0A0M3C6|A0A0A0M3C6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G666460 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 2.4e-69
Identity = 139/162 (85.80%), Postives = 144/162 (88.89%), Query Frame = 0

Query: 1   MFSSELLSQSLHFINPLSNPTIPQSHSSSFTR-RFPNKTHLRNGASSAETREPHDPILDN 60
           MFSSE L QSLHF NPL+ PTIPQS S S    RF NKTHLRN  SSAE R+PH P LDN
Sbjct: 1   MFSSEFLPQSLHFTNPLAKPTIPQSRSDSIPACRFSNKTHLRNVTSSAEFRQPHFPNLDN 60

Query: 61  RETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVM 120
           R+ HLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVM
Sbjct: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVM 120

Query: 121 EILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGF 162
           EILETYGDPDVYSYNAMISGFSKANQI+SAN+VFDRMR RGF
Sbjct: 121 EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 162

BLAST of Carg25503 vs. TrEMBL
Match: tr|A0A061F8R7|A0A061F8R7_THECC (Pentatricopeptide repeat (PPR-like) superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_026185 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.4e-40
Identity = 94/170 (55.29%), Postives = 120/170 (70.59%), Query Frame = 0

Query: 1   MFSSELLSQSLHFINPLSNPTI-PQSHSSSFTRRFPNKTHLRNGAS--------SAETRE 60
           +FS+EL++ SL F      PT    SH +S      +++   +  S        SAETR 
Sbjct: 3   LFSTELVTHSLPFTTQQLKPTSNSHSHHTSLVSCLNHESQDSSSKSRNNQKVRVSAETRP 62

Query: 61  PHDPILDNRETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRN 120
            H    D +ETHLMKLLNRSC+AGK+NE+ YFLE +V KG+KPDVVLCTK+IKGFFN RN
Sbjct: 63  THLLSFDFKETHLMKLLNRSCKAGKYNEAFYFLECMVGKGYKPDVVLCTKMIKGFFNGRN 122

Query: 121 LKKAMRVMEILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGF 162
           ++KA RV+EILE YG+PDV++YNA+ISGF K N+++ ANKV DRMR RGF
Sbjct: 123 VEKATRVIEILEKYGEPDVFAYNAIISGFCKMNRLDFANKVLDRMRSRGF 172

BLAST of Carg25503 vs. TrEMBL
Match: tr|A0A1U8LF97|A0A1U8LF97_GOSHI (pentatricopeptide repeat-containing protein At3g04760, chloroplastic-like OS=Gossypium hirsutum OX=3635 GN=LOC107926841 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.0e-40
Identity = 91/171 (53.22%), Postives = 121/171 (70.76%), Query Frame = 0

Query: 1   MFSSELLSQSLHF----INPLSNPTIPQSHSSSFTRRFPNKTHLRNGAS------SAETR 60
           +FS+EL+   L F    + P+SN +   +   S       K  +R   +      SAETR
Sbjct: 4   LFSTELIPHGLPFHPQQLKPVSNSSSHHTSLVSCLSHEGTKDSIRKSRNNQKVRVSAETR 63

Query: 61  EPHDPILDNRETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSR 120
             H    D +E+HLMKLLNRSC++GK++E+ YFLE +V KG+KPDVVLCTK+IKGFFN R
Sbjct: 64  PTHLSSFDFKESHLMKLLNRSCKSGKYHEAFYFLECMVGKGYKPDVVLCTKMIKGFFNGR 123

Query: 121 NLKKAMRVMEILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGF 162
           N++KA+RVME+LETYG+PDV++YNA+ISGF K N+++ ANKV DRMR RGF
Sbjct: 124 NVEKAIRVMEMLETYGEPDVFAYNALISGFCKMNRLDFANKVLDRMRSRGF 174

BLAST of Carg25503 vs. TrEMBL
Match: tr|A0A0D2TML8|A0A0D2TML8_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G275900 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.0e-40
Identity = 91/171 (53.22%), Postives = 121/171 (70.76%), Query Frame = 0

Query: 1   MFSSELLSQSLHF----INPLSNPTIPQSHSSSFTRRFPNKTHLRNGAS------SAETR 60
           +FS+EL+   L F    + P+SN +   +   S       K  +R   +      SAETR
Sbjct: 4   LFSTELIPHGLPFHPQQLKPVSNSSSHHTSLVSCLSHEGTKDSIRKSRNNQKVRVSAETR 63

Query: 61  EPHDPILDNRETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSR 120
             H    D +E+HLMKLLNRSC++GK++E+ YFLE +V KG+KPDVVLCTK+IKGFFN R
Sbjct: 64  PTHLSSFDFKESHLMKLLNRSCKSGKYHEAFYFLECMVGKGYKPDVVLCTKMIKGFFNGR 123

Query: 121 NLKKAMRVMEILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGF 162
           N++KA+RVME+LETYG+PDV++YNA+ISGF K N+++ ANKV DRMR RGF
Sbjct: 124 NVEKAIRVMEMLETYGEPDVFAYNALISGFCKMNRLDFANKVLDRMRSRGF 174

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022960811.11.4e-84100.00pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucurbita ... [more]
XP_023515375.14.0e-8499.38pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucurbita ... [more]
XP_022988060.16.9e-8499.38pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucurbita ... [more]
XP_008443759.15.1e-7187.04PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic ... [more]
XP_004142590.13.7e-6985.80PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic ... [more]
Match NameE-valueIdentityDescription
AT3G04760.18.6e-2057.89Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT2G39620.11.9e-0634.88Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G20300.11.2e-0527.47Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G01740.14.6e-0529.52Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G09650.11.0e-0431.40Tetratricopeptide repeat (TPR)-like superfamily protein[more]
Match NameE-valueIdentityDescription
sp|Q9SR00|PP213_ARATH1.5e-1857.89Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidop... [more]
sp|O80647|PP195_ARATH3.3e-0534.88Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana OX... [more]
sp|Q9LN22|PPR54_ARATH2.2e-0427.47Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidop... [more]
sp|Q9ZUA2|PP141_ARATH8.2e-0429.52Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3B9K3|A0A1S3B9K3_CUCME3.4e-7187.04pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Cucumis ... [more]
tr|A0A0A0M3C6|A0A0A0M3C6_CUCSA2.4e-6985.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G666460 PE=4 SV=1[more]
tr|A0A061F8R7|A0A061F8R7_THECC1.4e-4055.29Pentatricopeptide repeat (PPR-like) superfamily protein OS=Theobroma cacao OX=36... [more]
tr|A0A1U8LF97|A0A1U8LF97_GOSHI4.0e-4053.22pentatricopeptide repeat-containing protein At3g04760, chloroplastic-like OS=Gos... [more]
tr|A0A0D2TML8|A0A0D2TML8_GOSRA4.0e-4053.22Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G275900 PE=4 ... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25503-RACarg25503-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 389..561
e-value: 6.6E-40
score: 139.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 284..388
e-value: 7.6E-32
score: 112.1
coord: 53..178
e-value: 3.1E-32
score: 113.4
coord: 179..283
e-value: 3.0E-31
score: 110.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 84..121
e-value: 4.9E-6
score: 26.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 373..420
e-value: 8.5E-11
score: 41.8
coord: 128..177
e-value: 1.2E-19
score: 70.1
coord: 444..492
e-value: 2.7E-13
score: 49.8
coord: 237..280
e-value: 1.9E-11
score: 43.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 341..375
e-value: 2.0E-9
score: 35.1
coord: 201..234
e-value: 1.8E-5
score: 22.6
coord: 131..165
e-value: 4.2E-11
score: 40.3
coord: 271..305
e-value: 5.7E-8
score: 30.5
coord: 378..410
e-value: 4.8E-5
score: 21.3
coord: 446..479
e-value: 1.9E-8
score: 31.9
coord: 166..200
e-value: 2.3E-9
score: 34.8
coord: 306..340
e-value: 1.3E-9
score: 35.7
coord: 236..270
e-value: 8.3E-8
score: 29.9
coord: 481..515
e-value: 3.6E-6
score: 24.8
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 300..332
e-value: 4.0E-14
score: 51.9
coord: 194..225
e-value: 1.5E-6
score: 27.7
coord: 334..367
e-value: 3.6E-9
score: 36.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 409..443
score: 9.712
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 234..268
score: 12.364
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 164..198
score: 13.34
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 514..548
score: 6.796
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 374..408
score: 11.345
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 129..163
score: 14.052
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 479..513
score: 10.698
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 95..125
score: 6.697
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 444..478
score: 12.562
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 304..338
score: 13.351
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 199..233
score: 11.005
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 60..94
score: 7.552
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 339..373
score: 12.715
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 269..303
score: 11.652
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..43
NoneNo IPR availablePANTHERPTHR24015:SF572SUBFAMILY NOT NAMEDcoord: 7..540
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 7..540