Carg25437 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25437
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	zinc finger CCCH domain-containing protein 46-like isoform X1
Location	Cucurbita_argyrosperma_scaffold_300 : 117392 .. 122018 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGACAATTACTCTTTTAACTTTCAAGTAGTAGATCTGTAATCTTCTATCACCACTACGCCATTCCGTTTTTCTCTCTCCTGTTTAGAGAGAGAAACCTGTCACTCCCTGCTCCTCTTACTCTACTAAGCAAACCCACTTCGCTAAATGCTTCAAAACCCTACTGATTTCTGACCCCATTGTGTGTTTTTCTTGGGGAAAACGGATTTTCTTGAAGACCCATTAAGGTTTTTGAGGATTTGGGTGCTTGGGTTTGTGTTTTCTTGAAGAAACAGAGGAGAAAAATGGATGCATATGAAGCAAGTAGTTTGGTTTATGCGAAGATCAAGAACTTGGAGCCTGAAAATGCTTCGAAAATCATGGGGTTTCTTCTCATTCAAGACCTTGGCGATAAGGAGTTGATTCGTTTGGCTTTTGGCCCTGAAACCCTTTTGCATTCATTGATTTTGAAGGCCAAAGCTCATTTAGGGTTTTCTTTGAACTCTTCTTCTTCTTCTTCTTCAACGCCCTCTTCGCCTTCGCCTCTTAATCCCATCGCTAGACCTTCCAACACTAACCCTTTCTCTCAATCTAAAAACCCTTCTTCTTCTCCTTCCTCAACAAGTTCTTGGTCGTTTTCAGGAATCACTAACAATGTCATTAGCCCTAAATCCACTTCCCTTCTTTCTTATGACTGTATTCGAGCTCCCCCTTTTTCAATGCCTCCGTTTTTGCAGCACAAAAATGGGTTTGGAGATTCTGAAGTCAGTGAAGAGCCGCAAGTTAACGATTACCTTTCGTTTCTAAACGAGTCGTCTTCTTCAAGAGGTGAACAGAATTGGAGTCAATCTATGGATAATGCTGAGACCCCTTTTCATAGAAGGAGCTACTCTGCTAGTGATGTTTGTTTTGGCTCAGAAGATGGTGGATTTGGAGTTGGGTATAAGCCTTGTCTTTACTTTGCTAGAGGGTTTTGTAAAAATGGTAGCAATTGCAAGTTCTTGCATGGCGATTTCCCTGACTTGGTTGATCCTTCTGCTGCCATTGTTGGGTCTCCTAGCAAACTAGAGGGCTTGTTTGATCAACGTGAGGAGTTCATGAGATATAAGGCTGCTCAACAACAGAGATTAGCCACTGCTTCTGAGTTCATGGCTGGAGTTTCACCTTCTCAGTATAACAAATACATCAATTTTCTACTTCAACAACAGAATGAAACTCATAGGTAACCAAATATAGTGCATGAATCCCATAATATTTGTCTTCTTTTTGGGAATTTTAGCTTGGAAATGGTCTGTAATGCAATGTTTCTTCATTATTTGGAATGGATAATCTAGAGCTACAGCAGCAGCGCTCATGATGGGAGATGAGTATCAAAAGTTCGGCATTTCCAGAAACGAAAGGAACGATTTCTTGGCTTTGGCTGCTGAGAAGCGAAATTCAGCGTCGAGACAGATTTATTTGACATTCCCAGCTGATAGCACCTTCAAGGATGAAGATGTTTCAGAGTATTTCAGGTAACCAGTTAAAATATCCGGATGAATCGTTCGTGTCATTGTCGCTCCAACTTTGAGTATGATGATCTGAAATGTTTTTGTTTTATATATGAGTATGATGATTACCTTGCATCTGATTCATAGTTTTCTGTATTAAAACGTTTCAGGGTTTTAAGGAGGCTGGCCATTGAGGTTTTTTAACGCATATTGAAATAAGCCTAAGTTTCAGTACAATTGCTTTCGCTTTGTACTGATTCTTAACAAATAATTATCTCTCACTTAATTTCCCGTTTACCGGAATCGAGCCTTCGTTCATGTTCTATGCCTCTGCCTTCTGTTCAAACCTTCTTTGTTCTATTACAACTTTGGTTCGAGAATGGTGCGAGATTCTTCGAATGTGCTTACTTCTCAATGCATGTAAACGTAATTAGATGGTTTGATATATGCTTGAACATGAATTCATTGGATTCTAGATTTTCATTTGTAGTAAATCCAATAGAATAAGAGTTTCTTGAGGTGTCGTTTTTATGAACTCGACGAGATTTCTTTTCTTGTTCTGTTTTCTAACAAAAGAAGAAAAGAAACCTGAGTACATACTGAAGAAGTCTGAACACTATGCAACACAAACACTGAACGAGATAGGAAAAATGTTCCGTGTATGCGTTTGTTTGTTTATGCACCTACGTATCTCGTGCGAATACTTGCATAATTGTGGTCTTCATTCAAACATTTACTTTGACGACGTATTATGAGTAAAGGATACAATATTTATACGTTCAGTTTTATAGAATACTTAGGAGTACGTCTCAGAAACAAAGCTGCACTTTTCGCTACATCATATATGAATTTATCTTAGTTTAGTTGGTACGGGTTTTTGTCGATTTGATTTGCTTGATTGTAAACCGACTGGCCATAATCTACATTGAAGCAAATTGTAAGCGATTAGTGATTGATGAACTCTCATGTCTTACCTTTTTGCAGCAAATTTGGACCTGTGCAAGATGTTAGGATTCCGTACCAACAGAAGAGGATGTTCGGGTTCGTTACGTTTGTCTATCCAGAAACAGTAAAACATATATTGGCAAAGGGGAACCCACATTTCATATGCGAATCACGAGTACTCGTGAAACCATACAAAGAGAAGGGAAAAGTTCCAGAAAAGTAAATTTACCCTCAACTCTTTTTTATGTTCTATATTGTTCCCTTTCTACCTTTAAAAGTGATGTTTATAGTTGGGATGGAATGTAGGAGGCAGCAGCATCAACAACCGCAACTCGAGAGGGGAGACTTTTCTCCTTGTTTGAGCCCCTCTGGACTGGACGCTCGGGATCCTTACGACCTAAACCTCGGTATGAAATAACTAGGCAGGCCCCTTTCCCCCAAATTTCGACAGCCAAAGAAACCATATGTCTCTAATGGGTTATTCATATGAACCATTTGATTTACAGGAGCAAGAATGATGTATAACACTCAAGGGATGATGTTGCGTAGGAAATTAGAAGAGCAAGCTGAGTTGCAGCAAGCACTCGAACTTCAGGGAAGAAGGCTATTGAATCTCCAGCTTCCCGACTTGAAGAACGATCAGCTACACCACCATCACCCACACAATTTACCTATCTGTTCTCCATTATCCACCGAATCGCATAATCAAATGAATCAGAATATTTATCCTCCTGATTTTATAAACCAAGAAGCTTCTGAAGGTTTGCTGATTCTTCATGGTCTTCTCTCCTTTCTTTTGCTCGAACGTTTTCAATTGTTAGCTGACGATGAGAGCTGTTTCAGGTCATGAGAATAACCAAGTAACTACCAACAATGCGATGAGCACGCCGCAAAACTTTCAGCTGGAAGAGAATCCTTGTTTTATCCAAAGCAAAGCCATGGACGACGGCTACAACTCCAAACTGCTCGAAATCCACAAAAGGTCTAATTAAAACATCATAAGCACGAGATTATTTTCGTCGTACATTGTATTAACCATATTCTTCTCTATCATTTACTTTGGCCATGAGGTCAGTGTTGAGCAGGTCCTTCCTGATAGCCCATTTGCTTCTCCTAAAAAATCTGCATCGAGCCAACATCTCGACTTTTCTTCTGTTAAAGCAGACGGGTGTGGTCCCAATACATTACCGTCATCGTCTCAGAGCAACGCATCACTGGCTACCGGTCTTGCTGGTGACATAGCTGCCCCTTAATTAACCTTTTACCCCACAGCTGAATGGCAAGGTCCTGTTATCCTCTTCCTTGTGGTACCTCACTTTCCATCAAGCTAATTTTAGAAGTCAGTTATTCAAAGTAAGATACATTACTTTCCTTAGGTTTCTATTCCTTGTGTGAATCTTTTAAAATATAGGCAATAACTACAAGAGCATGGCCAGCAAATATCAACAATGTTAGGGTAAGACTTCACCGATCTCTGCCTCCTCGATTTTCTTATACTTTCAGGGTGTTATGTTTCGAGTTCTATCAAATGAAAACTGCTAACGGTGTTCGTATTTTATCTACGCAGAAAAAAATTAGAAAAGCTTATAGCAGGCAGAAGAATCATCCCCCGGATGTATAGTGAAATTATACCTACTTCGAAGAGTAGATCTATTACTACTATAGAGAGAAGATCTCCACAAGTATCATCTTCATCAATTTTACATACTCCTAACAGCCAATACATATATAAATTCATACATTTAGGACAGATGATTTGGTTTATGAGAGTTGAGTTAGGGTCTTCTGTGTTTATTATTATTACTATCTTGTGCTGGACCATGCTGACTAAATAACTACGGTCGTCGGGTCGGGTTAACTCCGTTTTACATTTTGCATCTACACATAAGTTCTTGTGTTTGTTCCTTGCATTATTCATAGTTAGGTAGAGTTTGAAGTTTGTGTGAAAGCTCACAAGAGCCTGTTGTGTATATAGTAGTAGGGTTGTTAGTGGATATAAGAAGACTTGAGAAATTTGTTGCAGCGGACACTCATTGGGACCAAAGAGCTACTTGCTTTACTCTGATCTTTTCCTCTAGATATAATATCATAATTTGATGATGGGTTGAATTGAAATTGACAAAACAAGGACAAAAATGGATTTTGATTTGGTTTGTGAAAGTTTTTAGCTTTAGAGGACTGTTTTGTCTCGCACTGTTGTTGTTGAGGCCCACAC

mRNA sequence

TGACAATTACTCTTTTAACTTTCAAGTAGTAGATCTGTAATCTTCTATCACCACTACGCCATTCCGTTTTTCTCTCTCCTGTTTAGAGAGAGAAACCTGTCACTCCCTGCTCCTCTTACTCTACTAAGCAAACCCACTTCGCTAAATGCTTCAAAACCCTACTGATTTCTGACCCCATTGTGTGTTTTTCTTGGGGAAAACGGATTTTCTTGAAGACCCATTAAGGTTTTTGAGGATTTGGGTGCTTGGGTTTGTGTTTTCTTGAAGAAACAGAGGAGAAAAATGGATGCATATGAAGCAAGTAGTTTGGTTTATGCGAAGATCAAGAACTTGGAGCCTGAAAATGCTTCGAAAATCATGGGGTTTCTTCTCATTCAAGACCTTGGCGATAAGGAGTTGATTCGTTTGGCTTTTGGCCCTGAAACCCTTTTGCATTCATTGATTTTGAAGGCCAAAGCTCATTTAGGGTTTTCTTTGAACTCTTCTTCTTCTTCTTCTTCAACGCCCTCTTCGCCTTCGCCTCTTAATCCCATCGCTAGACCTTCCAACACTAACCCTTTCTCTCAATCTAAAAACCCTTCTTCTTCTCCTTCCTCAACAAGTTCTTGGTCGTTTTCAGGAATCACTAACAATGTCATTAGCCCTAAATCCACTTCCCTTCTTTCTTATGACTGTATTCGAGCTCCCCCTTTTTCAATGCCTCCGTTTTTGCAGCACAAAAATGGGTTTGGAGATTCTGAAGTCAGTGAAGAGCCGCAAGTTAACGATTACCTTTCGTTTCTAAACGAGTCGTCTTCTTCAAGAGGTGAACAGAATTGGAGTCAATCTATGGATAATGCTGAGACCCCTTTTCATAGAAGGAGCTACTCTGCTAGTGATGTTTGTTTTGGCTCAGAAGATGGTGGATTTGGAGTTGGGTATAAGCCTTGTCTTTACTTTGCTAGAGGGTTTTGTAAAAATGGTAGCAATTGCAAGTTCTTGCATGGCGATTTCCCTGACTTGGTTGATCCTTCTGCTGCCATTGTTGGGTCTCCTAGCAAACTAGAGGGCTTGTTTGATCAACGTGAGGAGTTCATGAGATATAAGGCTGCTCAACAACAGAGATTAGCCACTGCTTCTGAGTTCATGGCTGGAGTTTCACCTTCTCAGTATAACAAATACATCAATTTTCTACTTCAACAACAGAATGAAACTCATAGAGCTACAGCAGCAGCGCTCATGATGGGAGATGAGTATCAAAAGTTCGGCATTTCCAGAAACGAAAGGAACGATTTCTTGGCTTTGGCTGCTGAGAAGCGAAATTCAGCGTCGAGACAGATTTATTTGACATTCCCAGCTGATAGCACCTTCAAGGATGAAGATGTTTCAGAGTATTTCAGCAAATTTGGACCTGTGCAAGATGTTAGGATTCCGTACCAACAGAAGAGGATGTTCGGGTTCGTTACGTTTGTCTATCCAGAAACAGTAAAACATATATTGGCAAAGGGGAACCCACATTTCATATGCGAATCACGAGTACTCGTGAAACCATACAAAGAGAAGGGAAAAGTTCCAGAAAAGAGGCAGCAGCATCAACAACCGCAACTCGAGAGGGGAGACTTTTCTCCTTGTTTGAGCCCCTCTGGACTGGACGCTCGGGATCCTTACGACCTAAACCTCGGAGCAAGAATGATGTATAACACTCAAGGGATGATGTTGCGTAGGAAATTAGAAGAGCAAGCTGAGTTGCAGCAAGCACTCGAACTTCAGGGAAGAAGGCTATTGAATCTCCAGCTTCCCGACTTGAAGAACGATCAGCTACACCACCATCACCCACACAATTTACCTATCTGTTCTCCATTATCCACCGAATCGCATAATCAAATGAATCAGAATATTTATCCTCCTGATTTTATAAACCAAGAAGCTTCTGAAGGTCATGAGAATAACCAAGTAACTACCAACAATGCGATGAGCACGCCGCAAAACTTTCAGCTGGAAGAGAATCCTTGTTTTATCCAAAGCAAAGCCATGGACGACGGCTACAACTCCAAACTGCTCGAAATCCACAAAAGTGTTGAGCAGGTCCTTCCTGATAGCCCATTTGCTTCTCCTAAAAAATCTGCATCGAGCCAACATCTCGACTTTTCTTCTGTTAAAGCAGACGGGTGTGGTCCCAATACATTACCGTCATCGTCTCAGAGCAACGCATCACTGGCTACCGGTCTTGCTGGTGACATAGCTGCCCCTTAATTAACCTTTTACCCCACAGCTGAATGGCAAGGTCCTGTTATCCTCTTCCTTGTGGTACCTCACTTTCCATCAAGCTAATTTTAGAAGTCAGTTATTCAAAGTAAGATACATTACTTTCCTTAGGTTTCTATTCCTTGTGTGAATCTTTTAAAATATAGGCAATAACTACAAGAGCATGGCCAGCAAATATCAACAATGTTAGGAAAAAAATTAGAAAAGCTTATAGCAGGCAGAAGAATCATCCCCCGGATGTATAGTGAAATTATACCTACTTCGAAGAGTAGATCTATTACTACTATAGAGAGAAGATCTCCACAAGTATCATCTTCATCAATTTTACATACTCCTAACAGCCAATACATATATAAATTCATACATTTAGGACAGATGATTTGGTTTATGAGAGTTGAGTTAGGGTCTTCTGTGTTTATTATTATTACTATCTTGTGCTGGACCATGCTGACTAAATAACTACGGTCGTCGGGTCGGGTTAACTCCGTTTTACATTTTGCATCTACACATAAGTTCTTGTGTTTGTTCCTTGCATTATTCATAGTTAGGTAGAGTTTGAAGTTTGTGTGAAAGCTCACAAGAGCCTGTTGTGTATATAGTAGTAGGGTTGTTAGTGGATATAAGAAGACTTGAGAAATTTGTTGCAGCGGACACTCATTGGGACCAAAGAGCTACTTGCTTTACTCTGATCTTTTCCTCTAGATATAATATCATAATTTGATGATGGGTTGAATTGAAATTGACAAAACAAGGACAAAAATGGATTTTGATTTGGTTTGTGAAAGTTTTTAGCTTTAGAGGACTGTTTTGTCTCGCACTGTTGTTGTTGAGGCCCACAC

Coding sequence (CDS)

ATGGATGCATATGAAGCAAGTAGTTTGGTTTATGCGAAGATCAAGAACTTGGAGCCTGAAAATGCTTCGAAAATCATGGGGTTTCTTCTCATTCAAGACCTTGGCGATAAGGAGTTGATTCGTTTGGCTTTTGGCCCTGAAACCCTTTTGCATTCATTGATTTTGAAGGCCAAAGCTCATTTAGGGTTTTCTTTGAACTCTTCTTCTTCTTCTTCTTCAACGCCCTCTTCGCCTTCGCCTCTTAATCCCATCGCTAGACCTTCCAACACTAACCCTTTCTCTCAATCTAAAAACCCTTCTTCTTCTCCTTCCTCAACAAGTTCTTGGTCGTTTTCAGGAATCACTAACAATGTCATTAGCCCTAAATCCACTTCCCTTCTTTCTTATGACTGTATTCGAGCTCCCCCTTTTTCAATGCCTCCGTTTTTGCAGCACAAAAATGGGTTTGGAGATTCTGAAGTCAGTGAAGAGCCGCAAGTTAACGATTACCTTTCGTTTCTAAACGAGTCGTCTTCTTCAAGAGGTGAACAGAATTGGAGTCAATCTATGGATAATGCTGAGACCCCTTTTCATAGAAGGAGCTACTCTGCTAGTGATGTTTGTTTTGGCTCAGAAGATGGTGGATTTGGAGTTGGGTATAAGCCTTGTCTTTACTTTGCTAGAGGGTTTTGTAAAAATGGTAGCAATTGCAAGTTCTTGCATGGCGATTTCCCTGACTTGGTTGATCCTTCTGCTGCCATTGTTGGGTCTCCTAGCAAACTAGAGGGCTTGTTTGATCAACGTGAGGAGTTCATGAGATATAAGGCTGCTCAACAACAGAGATTAGCCACTGCTTCTGAGTTCATGGCTGGAGTTTCACCTTCTCAGTATAACAAATACATCAATTTTCTACTTCAACAACAGAATGAAACTCATAGAGCTACAGCAGCAGCGCTCATGATGGGAGATGAGTATCAAAAGTTCGGCATTTCCAGAAACGAAAGGAACGATTTCTTGGCTTTGGCTGCTGAGAAGCGAAATTCAGCGTCGAGACAGATTTATTTGACATTCCCAGCTGATAGCACCTTCAAGGATGAAGATGTTTCAGAGTATTTCAGCAAATTTGGACCTGTGCAAGATGTTAGGATTCCGTACCAACAGAAGAGGATGTTCGGGTTCGTTACGTTTGTCTATCCAGAAACAGTAAAACATATATTGGCAAAGGGGAACCCACATTTCATATGCGAATCACGAGTACTCGTGAAACCATACAAAGAGAAGGGAAAAGTTCCAGAAAAGAGGCAGCAGCATCAACAACCGCAACTCGAGAGGGGAGACTTTTCTCCTTGTTTGAGCCCCTCTGGACTGGACGCTCGGGATCCTTACGACCTAAACCTCGGAGCAAGAATGATGTATAACACTCAAGGGATGATGTTGCGTAGGAAATTAGAAGAGCAAGCTGAGTTGCAGCAAGCACTCGAACTTCAGGGAAGAAGGCTATTGAATCTCCAGCTTCCCGACTTGAAGAACGATCAGCTACACCACCATCACCCACACAATTTACCTATCTGTTCTCCATTATCCACCGAATCGCATAATCAAATGAATCAGAATATTTATCCTCCTGATTTTATAAACCAAGAAGCTTCTGAAGGTCATGAGAATAACCAAGTAACTACCAACAATGCGATGAGCACGCCGCAAAACTTTCAGCTGGAAGAGAATCCTTGTTTTATCCAAAGCAAAGCCATGGACGACGGCTACAACTCCAAACTGCTCGAAATCCACAAAAGTGTTGAGCAGGTCCTTCCTGATAGCCCATTTGCTTCTCCTAAAAAATCTGCATCGAGCCAACATCTCGACTTTTCTTCTGTTAAAGCAGACGGGTGTGGTCCCAATACATTACCGTCATCGTCTCAGAGCAACGCATCACTGGCTACCGGTCTTGCTGGTGACATAGCTGCCCCTTAA

Protein sequence

MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAHLGFSLNSSSSSSSTPSSPSPLNPIARPSNTNPFSQSKNPSSSPSSTSSWSFSGITNNVISPKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSSSRGEQNWSQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARGFCKNGSNCKFLHGDFPDLVDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATASEFMAGVSPSQYNKYINFLLQQQNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKRNSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHILAKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQPQLERGDFSPCLSPSGLDARDPYDLNLGARMMYNTQGMMLRRKLEEQAELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSPLSTESHNQMNQNIYPPDFINQEASEGHENNQVTTNNAMSTPQNFQLEENPCFIQSKAMDDGYNSKLLEIHKSVEQVLPDSPFASPKKSASSQHLDFSSVKADGCGPNTLPSSSQSNASLATGLAGDIAAP

Homology

[Close]

BLAST of Carg25437 vs. NCBI nr
Match: XP_022930497.1 (zinc finger CCCH domain-containing protein 55 [Cucurbita moschata] >XP_022930505.1 zinc finger CCCH domain-containing protein 55 [Cucurbita moschata] >XP_022930513.1 zinc finger CCCH domain-containing protein 55 [Cucurbita moschata] >XP_022930522.1 zinc finger CCCH domain-containing protein 55 [Cucurbita moschata])

HSP 1 Score: 1193.7 bits (3087), Expect = 0.0e+00
Identity = 646/649 (99.54%), Postives = 646/649 (99.54%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH
Sbjct: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60

Query: 61  LGFSLNSXXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXXXXXXSFSGITNNVIS 120
           LGFSLNSXXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXXXXXXSFSGITNNVIS
Sbjct: 61  LGFSLNSXXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXXXXXXSFSGITNNVIS 120

Query: 121 PKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSSSRGEQNWS 180
           PKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSSSRGEQNWS
Sbjct: 121 PKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSSSRGEQNWS 180

Query: 181 QSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARGFCKNGSNCKFLHGDFPDL 240
           QSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARGFCKNGSNCKFLHGDFPDL
Sbjct: 181 QSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARGFCKNGSNCKFLHGDFPDL 240

Query: 241 VDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATASEFMAGVSPSQYNKYINFLLQQ 300
           VDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATASEFMAGVSPSQYNKYINFLLQQ
Sbjct: 241 VDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATASEFMAGVSPSQYNKYINFLLQQ 300

Query: 301 QNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKRNSASRQIYLTFPADSTFKDED 360
           QNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKRNSASRQIYLTFPADSTFKDED
Sbjct: 301 QNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKRNSASRQIYLTFPADSTFKDED 360

Query: 361 VSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHILAKGNPHFICESRVLVKPYKEK 420
           VSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHILAKGNPHFICESRVLVKPYKEK
Sbjct: 361 VSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHILAKGNPHFICESRVLVKPYKEK 420

Query: 421 GKVPEKRQQHQQPQLERGDFSPCLSPSGLDARDPYDLNLGARMMYNTQGMMLRRKLEEQA 480
           GKVPEKRQQHQQPQLERGDFSPCLSPSGLDARDPYDLNLGARMMYNTQGMMLRRKLEEQA
Sbjct: 421 GKVPEKRQQHQQPQLERGDFSPCLSPSGLDARDPYDLNLGARMMYNTQGMMLRRKLEEQA 480

Query: 481 ELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSPLSTESHNQMNQNIYPPDFINQ 540
           ELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSPLSTESHNQMNQNIYPPDFINQ
Sbjct: 481 ELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSPLSTESHNQMNQNIYPPDFINQ 540

Query: 541 EASEGHENNQVTTNNAMSTPQNFQLEENPCFIQSKAMDDGYNSKLLEIHKSVEQVLPDSP 600
           EASEGHENNQVTTNNAMSTPQNFQLEENPCFIQSKA DDGYNSKLLEIHKSVEQVLPDSP
Sbjct: 541 EASEGHENNQVTTNNAMSTPQNFQLEENPCFIQSKATDDGYNSKLLEIHKSVEQVLPDSP 600

Query: 601 FASPKKSASSQHLDFSSVKADGCGPNTLPSSSQSNASLATGLAGDIAAP 650
           FASPKKSASSQH DFSSVKADG GPNTLPSSSQSNASLATGLAGDIAAP
Sbjct: 601 FASPKKSASSQHPDFSSVKADGFGPNTLPSSSQSNASLATGLAGDIAAP 649

[Close]

BLAST of Carg25437 vs. NCBI nr
Match: XP_023531272.1 (zinc finger CCCH domain-containing protein 55 [Cucurbita pepo subsp. pepo] >XP_023531274.1 zinc finger CCCH domain-containing protein 55 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1186.8 bits (3069), Expect = 0.0e+00
Identity = 640/649 (98.61%), Postives = 640/649 (98.61%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH
Sbjct: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60

Query: 61  LGFSLNSXXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXXXXXXSFSGITNNVIS 120
           LGFSLNS    XXXXXXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXX  SGITNNVIS
Sbjct: 61  LGFSLNS-SSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGITNNVIS 120

Query: 121 PKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSSSRGEQNWS 180
           PKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSSSRGEQNWS
Sbjct: 121 PKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSSSRGEQNWS 180

Query: 181 QSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARGFCKNGSNCKFLHGDFPDL 240
           QSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARGFCKNGSNCKFLHGDFPDL
Sbjct: 181 QSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARGFCKNGSNCKFLHGDFPDL 240

Query: 241 VDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATASEFMAGVSPSQYNKYINFLLQQ 300
           VDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATASEFMAGVSPSQYNKYINFLLQQ
Sbjct: 241 VDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATASEFMAGVSPSQYNKYINFLLQQ 300

Query: 301 QNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKRNSASRQIYLTFPADSTFKDED 360
           QNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKRNSASRQIYLTFPADSTFKDED
Sbjct: 301 QNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKRNSASRQIYLTFPADSTFKDED 360

Query: 361 VSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHILAKGNPHFICESRVLVKPYKEK 420
           VSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHILAKGNPHFICESRVLVKPYKEK
Sbjct: 361 VSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHILAKGNPHFICESRVLVKPYKEK 420

Query: 421 GKVPEKRQQHQQPQLERGDFSPCLSPSGLDARDPYDLNLGARMMYNTQGMMLRRKLEEQA 480
           GKVPEKRQQHQQPQLERGDFSPCLSPSGLDARDPYDLNLGARMMYNTQGMMLRRKLEEQA
Sbjct: 421 GKVPEKRQQHQQPQLERGDFSPCLSPSGLDARDPYDLNLGARMMYNTQGMMLRRKLEEQA 480

Query: 481 ELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSPLSTESHNQMNQNIYPPDFINQ 540
           ELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSPLSTESHNQMNQNIYPPDFINQ
Sbjct: 481 ELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSPLSTESHNQMNQNIYPPDFINQ 540

Query: 541 EASEGHENNQVTTNNAMSTPQNFQLEENPCFIQSKAMDDGYNSKLLEIHKSVEQVLPDSP 600
           EASEGHENNQVTTNNAMSTPQNFQLEENPCFIQSKAMDDGYNSKLLEIHKSVEQVLPDSP
Sbjct: 541 EASEGHENNQVTTNNAMSTPQNFQLEENPCFIQSKAMDDGYNSKLLEIHKSVEQVLPDSP 600

Query: 601 FASPKKSASSQHLDFSSVKADGCGPNTLPSSSQSNASLATGLAGDIAAP 650
           FASPKKSASSQHLDFSSVKADGCGPNTLPSSSQSNASLATGLAGDIAAP
Sbjct: 601 FASPKKSASSQHLDFSSVKADGCGPNTLPSSSQSNASLATGLAGDIAAP 648

[Close]

BLAST of Carg25437 vs. NCBI nr
Match: XP_022967012.1 (zinc finger CCCH domain-containing protein 55 [Cucurbita maxima])

HSP 1 Score: 1173.7 bits (3035), Expect = 0.0e+00
Identity = 638/653 (97.70%), Postives = 640/653 (98.01%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH
Sbjct: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60

Query: 61  LGFSLNSXXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXXXXXXSFSGITNNVIS 120
           LGFSLNSXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXX FSGITNNVIS
Sbjct: 61  LGFSLNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSGITNNVIS 120

Query: 121 PKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSSSRGEQNWS 180
           PKSTSLLSYDCIRAPPFSMPPFLQ KNGFGDSEV EEPQVNDYLSFLNESSSSRGEQNW+
Sbjct: 121 PKSTSLLSYDCIRAPPFSMPPFLQLKNGFGDSEVGEEPQVNDYLSFLNESSSSRGEQNWT 180

Query: 181 QSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARGFCKNGSNCKFLHGDFPDL 240
           QSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARGFCKNGSNCKFLHGDFPDL
Sbjct: 181 QSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARGFCKNGSNCKFLHGDFPDL 240

Query: 241 VDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATASEFMAGVSPSQYNKYINFLLQQ 300
           VDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATASEFMAGVSPSQYNKYINFLLQQ
Sbjct: 241 VDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATASEFMAGVSPSQYNKYINFLLQQ 300

Query: 301 QNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKRNSASRQIYLTFPADSTFKDED 360
           QNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKRNSASRQIYLTFPADSTFKDED
Sbjct: 301 QNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKRNSASRQIYLTFPADSTFKDED 360

Query: 361 VSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHILAKGNPHFICESRVLVKPYKEK 420
           VSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHILAKGNPHFICESRVLVKPYKEK
Sbjct: 361 VSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHILAKGNPHFICESRVLVKPYKEK 420

Query: 421 GKVPEKRQQHQQPQLERGDFSPCLSPSGLDARDPYDLNLGARMMYNTQGMMLRRKLEEQA 480
           GKVPEKRQQHQQPQLERGDFSPCLSPSG+DARDPYDLNLGARMMYNTQGMMLRRKLEEQA
Sbjct: 421 GKVPEKRQQHQQPQLERGDFSPCLSPSGMDARDPYDLNLGARMMYNTQGMMLRRKLEEQA 480

Query: 481 ELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSPLSTESHNQMNQNIYPPDFINQ 540
           ELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSPLSTE HNQMNQNIYPPDFINQ
Sbjct: 481 ELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSPLSTELHNQMNQNIYPPDFINQ 540

Query: 541 EASEGHENNQVTTNNAMSTPQNFQLEENPCFIQS----KAMDDGYNSKLLEIHKSVEQVL 600
           EASEGHENNQVTTNNAMSTPQNFQLEENPCFIQS    KAMDDGYNSKLLEIHKSVEQVL
Sbjct: 541 EASEGHENNQVTTNNAMSTPQNFQLEENPCFIQSNNTGKAMDDGYNSKLLEIHKSVEQVL 600

Query: 601 PDSPFASPKKSASSQHLDFSSVKADGCGPNTLPSSSQSNASLATGLAGDIAAP 650
           PDSPFASPKKSAS QH DFSSVKADGCGPNTLPSSSQSNASLATGLAGDIAAP
Sbjct: 601 PDSPFASPKKSASGQHPDFSSVKADGCGPNTLPSSSQSNASLATGLAGDIAAP 653

[Close]

BLAST of Carg25437 vs. NCBI nr
Match: XP_011660149.1 (PREDICTED: zinc finger CCCH domain-containing protein 46-like [Cucumis sativus] >KGN66507.1 hypothetical protein Csa_1G616250 [Cucumis sativus])

HSP 1 Score: 1080.5 bits (2793), Expect = 0.0e+00
Identity = 562/675 (83.26%), Postives = 581/675 (86.07%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MDAYEA++LVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH
Sbjct: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60

Query: 61  LGFSLNSXXXXXXXXXXXXXXXXXAR--------PXXXXXXXXXXXXXXXXXXXXXXSFS 120
           LGF LNS                 +         P                      S S
Sbjct: 61  LGFPLNSSSSTPSSPSPLNPIARPSNSNPFSQSSPRIPNNGFDLTKNPSSPSTTGSWSLS 120

Query: 121 GITNNVISPKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSS 180
           GITNNVISPKS+ LLSYD IRA PFSMPPF+QHKNGF DSEV EEPQVN+YLSFLNESSS
Sbjct: 121 GITNNVISPKSSPLLSYDSIRAAPFSMPPFMQHKNGFVDSEVIEEPQVNEYLSFLNESSS 180

Query: 181 SRGE-------------QNWSQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240
           SRGE             QNW+QSMDNA+TPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF
Sbjct: 181 SRGEDLVDPRMELGRGLQNWTQSMDNADTPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240

Query: 241 ARGFCKNGSNCKFLHGDFPDLVDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATAS 300
           ARGFCKNGSNCKFLHGDF D VDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATAS
Sbjct: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATAS 300

Query: 301 EFMAGVSPSQYNKYINFLLQQQNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKR 360
           E MAGVSPSQYNKYINFLLQQQNE HRATAAALMMGDEY KFG+SR+ERNDFLALAAEKR
Sbjct: 301 ELMAGVSPSQYNKYINFLLQQQNENHRATAAALMMGDEYHKFGMSRSERNDFLALAAEKR 360

Query: 361 NSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHIL 420
           NSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVK+IL
Sbjct: 361 NSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKNIL 420

Query: 421 AKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQPQLERGDFSPCLSPSGLDARDPYDLNL 480
           AKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQ QL+RGDFSPCLSPSGLDARDPYDLNL
Sbjct: 421 AKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQQQLDRGDFSPCLSPSGLDARDPYDLNL 480

Query: 481 GARMMY-NTQGMMLRRKLEEQAELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICS 540
           GARMMY NTQGMMLRRKLEEQ ELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPIC+
Sbjct: 481 GARMMYNNTQGMMLRRKLEEQVELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICA 540

Query: 541 PLSTESHNQMNQNIYPPDFINQEASEGHENNQVTTNNAMSTPQNFQLEENPCFIQS---- 600
           PLS ESHNQMNQNI+PPDFIN EASEGHENNQ+ TNNA+ST QNFQLEEN CFIQS    
Sbjct: 541 PLSIESHNQMNQNIFPPDFINPEASEGHENNQLATNNAISTQQNFQLEENLCFIQSNSGG 600

Query: 601 KAMDDGYNSKLLEIHKSVEQVLPDSPFASPKKSASSQHLDFSSVKADGCGPNTLPSSSQS 650
           KA +DGYNS+LLEIHKSVEQVLPDSPFASPKKSA  QH D SSVK DGCGPNTLPSSSQS
Sbjct: 601 KATEDGYNSELLEIHKSVEQVLPDSPFASPKKSALGQHSDISSVKGDGCGPNTLPSSSQS 660

[Close]

BLAST of Carg25437 vs. NCBI nr
Match: XP_016900900.1 (PREDICTED: zinc finger CCCH domain-containing protein 46-like isoform X1 [Cucumis melo])

HSP 1 Score: 1072.4 bits (2772), Expect = 5.9e-310
Identity = 552/657 (84.02%), Postives = 570/657 (86.76%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MDAYEA++LVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH
Sbjct: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60

Query: 61  LGFSLNS--------XXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXXXXXXSFS 120
           LGF LNS                         + P                      S S
Sbjct: 61  LGFPLNSSSSTPSSPSPLNPIARPLNSNPFSQSSPRIPNNGFDLTKNPSSPSTTSSWSLS 120

Query: 121 GITNNVISPKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSS 180
           GITNNVISPKS+ LLSYD IRA PFSMPPF+QHKNGF DSEV EEPQVNDYLSFLNESSS
Sbjct: 121 GITNNVISPKSSPLLSYDSIRAAPFSMPPFMQHKNGFVDSEVIEEPQVNDYLSFLNESSS 180

Query: 181 SRGE-------------QNWSQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240
           SRGE             QNW+QSMDNA+TPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF
Sbjct: 181 SRGEDLVDPRTELGRGLQNWTQSMDNADTPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240

Query: 241 ARGFCKNGSNCKFLHGDFPDLVDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATAS 300
           ARGFCKNGSNCKFLHGDF D VDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATAS
Sbjct: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATAS 300

Query: 301 EFMAGVSPSQYNKYINFLLQQQNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKR 360
           E MAGVSPSQYNKYINFLLQQQNE HRATAAALMMGDEY KFG+SR+ERNDFLALAAEKR
Sbjct: 301 ELMAGVSPSQYNKYINFLLQQQNENHRATAAALMMGDEYHKFGMSRSERNDFLALAAEKR 360

Query: 361 NSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHIL 420
           NSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVK+IL
Sbjct: 361 NSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKNIL 420

Query: 421 AKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQPQLERGDFSPCLSPSGLDARDPYDLNL 480
           AKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQ QL+RGDFSPCLSPSGLDARDPYDLNL
Sbjct: 421 AKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQQQLDRGDFSPCLSPSGLDARDPYDLNL 480

Query: 481 GARMMYNTQGMMLRRKLEEQAELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSP 540
           GARMMYNTQGMMLRRKLEEQ ELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPIC+P
Sbjct: 481 GARMMYNTQGMMLRRKLEEQVELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICAP 540

Query: 541 LSTESHNQMNQNIYPPDFINQEASEGHENNQVTTNNAMSTPQNFQLEENPCFIQS----K 600
           LS ESHNQMNQNI+PPDFINQEASEGHENNQ+ TNNA+ST QNFQLEENPCF+QS    K
Sbjct: 541 LSIESHNQMNQNIFPPDFINQEASEGHENNQLATNNAISTQQNFQLEENPCFVQSNSGGK 600

Query: 601 AMDDGYNSKLLEIHKSVEQVLPDSPFASPKKSASSQHLDFSSVKADGCGPNTLPSSS 633
           A +DGYNS+LLEIHKSVEQVLPDSPFASPKKSA  QH D SSVKADGCGPNTLPSSS
Sbjct: 601 ATEDGYNSELLEIHKSVEQVLPDSPFASPKKSALGQHSDISSVKADGCGPNTLPSSS 657

[Close]

BLAST of Carg25437 vs. TAIR10
Match: AT3G21100.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 394.8 bits (1013), Expect = 1.0e-109
Identity = 273/658 (41.49%), Postives = 374/658 (56.84%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MD  + +S+++ KI+ LEP+ ASKI+G+LL+QDLG  +L+RLA GPETLL S+ LKAK+ 
Sbjct: 1   MDPGDPTSILFTKIRTLEPDFASKIIGYLLLQDLGKTDLMRLALGPETLLQSVCLKAKSA 60

Query: 61  LGFSLNSXXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXXXXXXSFSGITNNVIS 120
           LG S N                  +RP                        +G + N +S
Sbjct: 61  LGLSSNG------SSSASSPLNPISRPINIHRHSLSHSSPG----------NGFSRNPLS 120

Query: 121 P---------KSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESS 180
           P          + +++                            +E Q+ +YLSFLNESS
Sbjct: 121 PSFATPGSLGSNPNMIXXXXXXXXXXXXXXXXXXXXXXXXXXFLDEQQLGNYLSFLNESS 180

Query: 181 SSRGEQN---WSQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARGFCKNGS 240
           S   +++   +  S DN +   H+RS+SASD CFGSE+ GFG G              G 
Sbjct: 181 SKNNDESLDPFGFSADNGDAHLHKRSFSASDACFGSEEPGFGGG--------------GY 240

Query: 241 NCKFLHGDFPDLVDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATASEFMAGVSPS 300
           N +FLHG   D  D S    GSP  +     Q+EE +R K AQ+QR+A A    A  SP 
Sbjct: 241 N-RFLHGGLGDDFD-SPGGFGSPDYVS---RQQEEIVRMKMAQRQRMAAAQYLAATGSPM 300

Query: 301 QYNKYINFLLQQQNETHRATAAALMMGDEYQKFGI-SRNERNDFLALAAEKRNSASRQIY 360
            Y K +NFLL Q+N  HR+ A     G+E   FG   R+ER++F+ +  +K NSAS+QIY
Sbjct: 301 SYEKGLNFLLHQRN-AHRSGAG--QFGEEGYWFGSPGRHERDEFMGM-GDKSNSASKQIY 360

Query: 361 LTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHILAKGNPHFI 420
           LTFPADS+F DEDVS YF  FGPVQDVRIPYQQKRMFGFVTF++ ETV+ ILA+GNPHFI
Sbjct: 361 LTFPADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRMFGFVTFLHSETVRIILARGNPHFI 420

Query: 421 CESRVLVKPYKEKGKVPEKRQQHQ-QPQLERGDFSPCLSPSGLDARDPYDLNLGARMMYN 480
           C+SRVLVKPYKEKG++ EKRQQ Q   Q+ERG+FSP  SPSG+D+RD +D +L  RM  N
Sbjct: 421 CDSRVLVKPYKEKGRILEKRQQQQLLQQMERGNFSPGSSPSGMDSRDLFDSHLAPRMFSN 480

Query: 481 TQGMMLRRKLEEQAELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSPLSTESHN 540
           TQ MM  R+  EQA+LQQA+E Q RR L+LQLPD+ ++   HH   +L I SP+      
Sbjct: 481 TQEMM--RRKAEQADLQQAIEFQRRRFLSLQLPDMDSESFLHHQ-RSLSIGSPVHFSP-- 540

Query: 541 QMNQN-IYPPDFINQEASEGHENNQVTTNNAMSTPQNFQLEENPCFIQSK----AMDDGY 600
           ++NQ+ ++  +  + E  EG+ ++              Q E    F+       + + GY
Sbjct: 541 RVNQSMLFRSESTSDEVFEGNGDS------------GHQSEATRAFLSDTGHNISQERGY 599

Query: 601 NSKLLEIHK-SVEQVLPDSPFASPKKSASSQHLDFSSVKADGCGPNTLPSSSQSNASL 639
           NS L +  + S+E  LPDS FASP K+  +QH +F   + + C   ++ + +++ +SL
Sbjct: 601 NSHLNKGQETSLENTLPDSFFASPSKTGETQHPEF---EKENCATISVTTENKAASSL 599

[Close]

BLAST of Carg25437 vs. TAIR10
Match: AT5G12440.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain)

HSP 1 Score: 382.5 bits (981), Expect = 5.2e-106
Identity = 269/639 (42.10%), Postives = 359/639 (56.18%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MD+ +A+SL+  KI++LEP+ A KI+G+LL+ D GD++L+ LA GPE++L S I K K+ 
Sbjct: 1   MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60

Query: 61  LG-FSLNSXXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXXXXXXSFSGITNNVI 120
           LG FS NS                                      XXXX          
Sbjct: 61  LGIFSNNSPSSTPTSPSPLNPICRPPLNGRGSSHSNGFMDFRRNSPXXXXXXXXXXXXXX 120

Query: 121 SPKSTSLLSYDCIRAPPFSMPPFLQHKNGF-----------GDSEVSEEPQVNDYLSFLN 180
                    +   +  P S P      NG            G +++ ++ Q+ND LSFL+
Sbjct: 121 XXXXXXXXPHISPKHTPISKPFSSHQSNGLSATHSGSADAAGGADLLDDQQLNDCLSFLD 180

Query: 181 ESSSSRGEQ-----NWSQSMD-NAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARG 240
           +S S   +          S+D + ET  HRRS+S  D  F S D GFG G KPC+YF+RG
Sbjct: 181 DSCSKTEDLVDPSIPLDYSVDGDGETHLHRRSFSC-DASFVSGDDGFGGGCKPCVYFSRG 240

Query: 241 FCKNGSNCKFLHGDFPDLVDPSAAIVGSPSKLEGLFDQREEFMRYKAA-QQQRLATASEF 300
            CKNG +CKF+HG +PD +D +  +  SP K+E    Q EE MR K A QQQRL  AS+ 
Sbjct: 241 LCKNGESCKFIHGGYPDNMDGNGIVADSPRKMENFVRQHEEMMRLKLAYQQQRL--ASQI 300

Query: 301 MAGVSPSQYNKYINFLLQQQNETHRATAAALMMGDE-YQKFGISRNERNDFLALAAEKRN 360
           +       Y K ++FLLQQ    H      L  GDE +      R ER +      ++ N
Sbjct: 301 LGRAPQLPYEKRMDFLLQQ----HAQRDGGLPFGDERFWSSSPGRLERMELAMHLGDQSN 360

Query: 361 SASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHILA 420
           SASRQIYLTFPADSTFKDEDV+ YFS FG VQDVRIPYQQKRMFGFV+F +PETVK +LA
Sbjct: 361 SASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLA 420

Query: 421 KGNPHFICESRVLVKPYKEKGKVPEKRQQH-QQPQLERGDFSPCLSPSGLDARDPYDLNL 480
           +GNPHFIC+SRVLVKPYKEKGKV +K+QQ   Q Q+ERG++SPC SPSG+D R+  D +L
Sbjct: 421 RGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQQQIERGNYSPCSSPSGIDPREQSDFHL 480

Query: 481 GARMMYNTQGMMLRRKLEEQAELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSP 540
           G++M+Y  + MM RRK+ EQA+L +A+EL+ RR +NLQLP+ KN    +HH  +  + SP
Sbjct: 481 GSKMLYERREMM-RRKI-EQADLLRAIELERRRFINLQLPEFKNSVTLNHH-RSFSVGSP 540

Query: 541 LSTESHNQMNQNIYPPDFINQEASEGHENNQVTTNNAMSTPQNFQLEENPCFIQSK---- 600
               S    NQ+   PDF  Q    G +  +VT +     P       NP  + +     
Sbjct: 541 GYFSSAG--NQS---PDF--QSELNGADALKVTDDTLELHPYPV---VNPMSVNNSYSNG 600

Query: 601 AMDDGYNSKLL--EIHKSVEQVLPDSPFASPKKSASSQH 613
           A ++   S+LL  +   ++E VLP + F  P  S++  H
Sbjct: 601 AKEETNKSELLDPDSGSTIELVLPSNLF--PSASSTDDH 617

[Close]

BLAST of Carg25437 vs. TAIR10
Match: AT3G51950.1 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 331.6 bits (849), Expect = 1.1e-90
Identity = 256/646 (39.63%), Postives = 327/646 (50.62%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MD YEA+ +V ++I++L+PENASKIMG LL+QD G+KE+IRLAFGPETL+HS+I+KAK  
Sbjct: 1   MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60

Query: 61  LGFSLNSXXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXXXXXXSFSGITNNVIS 120
           LG                                                          
Sbjct: 61  LGL--------------------------------------------------------- 120

Query: 121 PKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSSSRGEQNWS 180
                    +C R+P       +  KN  G    S  P    +  + N   SSR   N  
Sbjct: 121 --------MNCSRSPWSHQDELISPKNNRGS---SLNPASLPF--YANGGRSSRDLTNDF 180

Query: 181 QSMD---NAETPFHRRSYSASDVC------FGSEDGGFGVGYKPCLYFARGFCKNGSNCK 240
           + MD   +  T F    ++ S  C      +G  D   G G  PC YFARGFCKNG++C+
Sbjct: 181 ELMDDMNSRSTDFLGSVHARSGSCVLDGLGYGG-DSDLGFGGVPCSYFARGFCKNGASCR 240

Query: 241 FLHGDFPDLVDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATASEFMAGVS-PSQY 300
           F+H       D  A +VGSPS++        E +R  +   +    A  FM   S PS  
Sbjct: 241 FVHS------DGGADLVGSPSRI--------ELLRSNSVPPR---LAHHFMTRSSLPSFS 300

Query: 301 NKYINFLLQQQNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKRNSASRQIYLTF 360
            K +N    QQN+  RA AAALM+GDE QK G  R ER D  A+A      ASRQIYLTF
Sbjct: 301 TKGVNL---QQNDVQRA-AAALMIGDELQKLGRWRPERIDLSAMAC----PASRQIYLTF 360

Query: 361 PADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHILAKGNPHFICES 420
           PADS F++EDVS YFS FGPVQDVRIPYQQKRMFGFVTFVYPETVK ILAKGNPHF+C+S
Sbjct: 361 PADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCDS 420

Query: 421 RVLVKPYKEKGKVPEKRQQHQQPQLERGDFSPCLSPSGLDARDPYDLNLGARMMY-NTQG 480
           RVLVKPYKEKGKVP+K + +Q  + E       LSP+GLD+  P D+ LG R  Y NTQ 
Sbjct: 421 RVLVKPYKEKGKVPDKYRTNQTTERE-------LSPTGLDS-SPRDV-LGGRGFYNNTQD 480

Query: 481 MMLRRKLEEQAELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSPLSTESHNQMN 540
           ++ R K EE     + LELQ RRL+NLQL D+K          +  + SP +  S N  +
Sbjct: 481 VLWRSKFEE-----EILELQSRRLMNLQLLDVKK---------HFQLNSPTNIHSPNPFS 497

Query: 541 QNIYPP---DFINQEASEGHENNQVTTNNAMSTPQNFQLEENPCFIQSKAMDDGYNSKLL 600
           Q++  P     I +E   G +                            +  +G +   +
Sbjct: 541 QSLISPRPLSVIKREYDGGEKG-------------------------KGSSKEGSDDDTM 497

Query: 601 EIHKSVEQVLPDSPFASPKKSASSQHLDFSSVKADGCGPNTLPSSS 633
            + + +E  LPDSPFASP     + HL   +  AD  G +    SS
Sbjct: 601 NLPERLEDSLPDSPFASP-----AHHLLLFADSADNNGSDLWSPSS 497

[Close]

BLAST of Carg25437 vs. TAIR10
Match: AT1G51520.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 258.5 bits (659), Expect = 1.1e-68
Identity = 208/619 (33.60%), Postives = 294/619 (47.50%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MD  + +S++++KI+  E ENAS+++ + L+QD+  ++LIR+AFGP++L+ +   KAK  
Sbjct: 1   MDPGDPTSIIFSKIRTFELENASRVIDYFLLQDMEQRDLIRIAFGPDSLIQTFCQKAKVD 60

Query: 61  LGFSLNSXXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXXXXXXSFSGITNNVIS 120
           LGFS N                  +RP                       F   + N  +
Sbjct: 61  LGFSSNG----------------FSRP-------INIHGQSLSSSSPRNGFLEFSRNPSN 120

Query: 121 PKSTSLLSYDCIR--APPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSSSRGEQN 180
           P S+S L+ + +R   P F+  PF +                      L           
Sbjct: 121 PLSSS-LTLNTLRDNKPNFNSSPFRESXXXXXXXXXXXXXXXXXXXXXL----------- 180

Query: 181 WSQSMDNAETPF---HRRSYSASDVCFGSEDGGFGVGYKPCLYFARGFCKNGSNCKFLHG 240
                 N E PF   H+RS+SA+D CF SE+  FG G   C  F +G   +G        
Sbjct: 181 ----FTNDEDPFANSHKRSFSANDACFESEEPWFG-GGNGCHQFPQGGLVDGFG------ 240

Query: 241 DFPDLVDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATASEFMAGVSPSQYNKYIN 300
                   S+ + GSPS+++ +    E  MR K AQQ+ +  A    A  SP        
Sbjct: 241 --------SSGVFGSPSEMDYML---EGMMRMKLAQQKSMVAAQFMAACGSP-------- 300

Query: 301 FLLQQQNETHRATAAALMMGDEY-QKFGISRNERNDFLALAAEKRNSASRQIYLTFPADS 360
            +L +    H         G+E    F   R+ER D          S S+QIYLTFP++S
Sbjct: 301 -MLHRHGSGH--------FGEECGNYFSQGRHERED----------SVSKQIYLTFPSES 360

Query: 361 TFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHILAKGNPHFICESRVLV 420
           +F DEDVS YF  FG V DVRIPYQQ+RM+GFVTF   ETV+ ILA+GNPHFIC+SRVLV
Sbjct: 361 SFTDEDVSTYFRDFGLVDDVRIPYQQQRMYGFVTFAKAETVRTILARGNPHFICDSRVLV 420

Query: 421 KPYKEKGKVPEKRQQHQQPQ-LERGDFSPCLSPSGLDARDPYDLNLGARMMYNTQGMMLR 480
           KPYKEKGK+ +KRQQ Q  + LERG++SP  SPSG D+R+ Y+  LG RM       MLR
Sbjct: 421 KPYKEKGKILQKRQQQQLHELLERGNYSPSSSPSGKDSRELYECRLGPRMFSKKTQEMLR 480

Query: 481 RKLEEQAELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSPLSTESHNQMNQNIY 540
           RK  EQA+LQ A+E                                + + SH       +
Sbjct: 481 RK-TEQADLQHAIERS----------------------------PSIGSPSH-------F 493

Query: 541 PPDFINQEA-SEGHENNQVTTNNAMSTPQNFQLEENPCFIQSKAMDDGYNSKLLEIHK-S 600
           PP F +      G+ N ++   ++  + ++ Q       + +   + GYN+   +  + S
Sbjct: 541 PPRFNHSLLFQSGNNNEEIMEGDSDRSEKDLQQ------VATSNEERGYNNGFYKGQETS 493

Query: 601 VEQVLPDSPFASPKKSASS 611
           +E  LPDS F SPKKS  +
Sbjct: 601 LENTLPDSLFGSPKKSGET 493

[Close]

BLAST of Carg25437 vs. TAIR10
Match: AT3G63450.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 202.6 bits (514), Expect = 7.4e-52
Identity = 201/630 (31.90%), Postives = 265/630 (42.06%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MD YEA+ +V ++I+NL+P NASKI+G LL+QD G+KE+IRLAFGP+ LLHS+I KAK  
Sbjct: 1   MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKD 60

Query: 61  LGFSLNSXXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXXXXXXSFSGITNNVIS 120
           L                                                           
Sbjct: 61  L----------------------------------------------------------- 120

Query: 121 PKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSSSRGEQNWS 180
                                                    + LSFL   ++   E    
Sbjct: 121 ----------------------------------------EERLSFLTPRTAEDFE---- 180

Query: 181 QSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARGFCKNGSNCKFLHGDFPDL 240
                                    D GFG G+                           
Sbjct: 181 ------------------------SDLGFGWGH--------------------------- 240

Query: 241 VDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATASEFMA-GVSPSQYNKYINFLLQ 300
                               R+E +R  +   +    A++F     SP   N        
Sbjct: 241 --------------------RKEVLRSNSVPPR---LANQFTGYPFSPKGVN-------L 300

Query: 301 QQNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKRNSASRQIYLTFPADSTFKDE 360
           QQ+E  R  AAALMMGD+  K GI R ER D  A A      ASRQIYLTFPADS F++E
Sbjct: 301 QQSEAQR--AAALMMGDDLHKLGIWRPERIDLSATAC----PASRQIYLTFPADSIFREE 360

Query: 361 DVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHILAKGNPHFICESRVLVKPYKE 420
           DVS+YFS FGPVQDVRIPYQQKRMFGFVTF+YPETVK ILAKGNPHF+C SRVLVKPYKE
Sbjct: 361 DVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKE 401

Query: 421 KGKVPEKRQQHQQPQLERGDFSPCLSPSGLDARDPYDLNLGARMMYNTQGMMLRRKLEEQ 480
           KGKVP+K +                 PS    RD  D  LG R  +  + ++ +R+ EE 
Sbjct: 421 KGKVPDKYR---------------TKPS----RDIMDFQLGGRAFH--EDLLWKRRFEE- 401

Query: 481 AELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSPLSTESHNQMNQNIYPPDFIN 540
               +ALELQ  RL+NLQL D++  Q   +    L + SP    ++ ++       D I 
Sbjct: 481 ----RALELQSTRLMNLQLLDVEK-QFQLNFDQTL-LVSPRLVSNNQRVCTKENDEDTI- 401

Query: 541 QEASEGHENNQVTTNNAMSTPQNFQLEENPCFIQSKAMDDGYNSKLLEIHKSVEQVLPDS 600
            +  E  E++++  +  +S P++  LE   C + ++    G +S   +  +S    L + 
Sbjct: 541 -KLPESLEDDRLVDSPIVS-PKHHFLE---CGVAAETKGSGLSSPSFDQDESSTGTLKE- 401

Query: 601 PFASPKKSASSQ--HLDFSSVKADGCGPNT 628
               P KS   Q   L    +     GP T
Sbjct: 601 ----PLKSLKCQMPRLSMMGITQGSSGPTT 401

[Close]

BLAST of Carg25437 vs. Swiss-Prot
Match: sp|Q94CJ8|C3H55_ARATH (Zinc finger CCCH domain-containing protein 55 OS=Arabidopsis thaliana OX=3702 GN=At5g12440 PE=2 SV=3)

HSP 1 Score: 382.5 bits (981), Expect = 9.4e-105
Identity = 269/639 (42.10%), Postives = 359/639 (56.18%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MD+ +A+SL+  KI++LEP+ A KI+G+LL+ D GD++L+ LA GPE++L S I K K+ 
Sbjct: 1   MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60

Query: 61  LG-FSLNSXXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXXXXXXSFSGITNNVI 120
           LG FS NS                                      XXXX          
Sbjct: 61  LGIFSNNSPSSTPTSPSPLNPICRPPLNGRGSSHSNGFMDFRRNSPXXXXXXXXXXXXXX 120

Query: 121 SPKSTSLLSYDCIRAPPFSMPPFLQHKNGF-----------GDSEVSEEPQVNDYLSFLN 180
                    +   +  P S P      NG            G +++ ++ Q+ND LSFL+
Sbjct: 121 XXXXXXXXPHISPKHTPISKPFSSHQSNGLSATHSGSADAAGGADLLDDQQLNDCLSFLD 180

Query: 181 ESSSSRGEQ-----NWSQSMD-NAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARG 240
           +S S   +          S+D + ET  HRRS+S  D  F S D GFG G KPC+YF+RG
Sbjct: 181 DSCSKTEDLVDPSIPLDYSVDGDGETHLHRRSFSC-DASFVSGDDGFGGGCKPCVYFSRG 240

Query: 241 FCKNGSNCKFLHGDFPDLVDPSAAIVGSPSKLEGLFDQREEFMRYKAA-QQQRLATASEF 300
            CKNG +CKF+HG +PD +D +  +  SP K+E    Q EE MR K A QQQRL  AS+ 
Sbjct: 241 LCKNGESCKFIHGGYPDNMDGNGIVADSPRKMENFVRQHEEMMRLKLAYQQQRL--ASQI 300

Query: 301 MAGVSPSQYNKYINFLLQQQNETHRATAAALMMGDE-YQKFGISRNERNDFLALAAEKRN 360
           +       Y K ++FLLQQ    H      L  GDE +      R ER +      ++ N
Sbjct: 301 LGRAPQLPYEKRMDFLLQQ----HAQRDGGLPFGDERFWSSSPGRLERMELAMHLGDQSN 360

Query: 361 SASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHILA 420
           SASRQIYLTFPADSTFKDEDV+ YFS FG VQDVRIPYQQKRMFGFV+F +PETVK +LA
Sbjct: 361 SASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLA 420

Query: 421 KGNPHFICESRVLVKPYKEKGKVPEKRQQH-QQPQLERGDFSPCLSPSGLDARDPYDLNL 480
           +GNPHFIC+SRVLVKPYKEKGKV +K+QQ   Q Q+ERG++SPC SPSG+D R+  D +L
Sbjct: 421 RGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQQQIERGNYSPCSSPSGIDPREQSDFHL 480

Query: 481 GARMMYNTQGMMLRRKLEEQAELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSP 540
           G++M+Y  + MM RRK+ EQA+L +A+EL+ RR +NLQLP+ KN    +HH  +  + SP
Sbjct: 481 GSKMLYERREMM-RRKI-EQADLLRAIELERRRFINLQLPEFKNSVTLNHH-RSFSVGSP 540

Query: 541 LSTESHNQMNQNIYPPDFINQEASEGHENNQVTTNNAMSTPQNFQLEENPCFIQSK---- 600
               S    NQ+   PDF  Q    G +  +VT +     P       NP  + +     
Sbjct: 541 GYFSSAG--NQS---PDF--QSELNGADALKVTDDTLELHPYPV---VNPMSVNNSYSNG 600

Query: 601 AMDDGYNSKLL--EIHKSVEQVLPDSPFASPKKSASSQH 613
           A ++   S+LL  +   ++E VLP + F  P  S++  H
Sbjct: 601 AKEETNKSELLDPDSGSTIELVLPSNLF--PSASSTDDH 617

[Close]

BLAST of Carg25437 vs. Swiss-Prot
Match: sp|Q0D3J9|C3H53_ORYSJ (Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0682400 PE=2 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 6.1e-96
Identity = 273/676 (40.38%), Postives = 346/676 (51.18%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MDAYEA+ +V+++I+ L+P++A+KIMGFLLIQD G+KE+IRLAFGPE LLH+++ KA+  
Sbjct: 1   MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60

Query: 61  LGFSLNSXXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXXXXXXSFSG----ITN 120
           LG    S                                          S++       N
Sbjct: 61  LGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFSRN 120

Query: 121 NVISPKS--------TSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLN 180
           N IS  +          L+S      PP    PF      FG   + +E Q+ D L+FLN
Sbjct: 121 NSISNGAGEEMVGLGDELISPANGGGPP---SPF------FGGDPLMDELQLQDQLAFLN 180

Query: 181 ESSSSRGEQNWSQSMDNAET---------------------PFHRRSYSASDVCFGSEDG 240
           E     G Q      D  E                      P HRRS S S++C G  D 
Sbjct: 181 EGGVPAGHQ--MPMFDGGECRSPGGGDGGLFSYNLGWANGGPGHRRSASVSELCLGGAD- 240

Query: 241 GFGVGYKPCLYFARGFCKNGSNCKFLHGDFPDLVDPSAAIVGSPSKLEGLFDQREEFMRY 300
             G+G+KPCLY+ARG+CKNGS C+F+HG  PD     AA    PS +E    Q ++F+  
Sbjct: 241 --GLGWKPCLYYARGYCKNGSACRFVHGGLPD----DAAGKMDPSAVE---QQCQDFL-- 300

Query: 301 KAAQQQRLATASEFMAGV-----SPSQYNKYIN-----FLLQQQNETHRATAAALMMGDE 360
             ++ QRLA A+   +       SPS   K ++                          E
Sbjct: 301 IRSKSQRLAAAAFPYSPTGSLPGSPSAATKCLSXXXXXXXXXXXXXXXXXXXXXXXXXXE 360

Query: 361 YQKF-GISRNERNDFLALAAEKRNSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRI 420
             KF G  R ER DF    A   N  SRQIYLTFPADSTF++EDVS YFS +GPV DVRI
Sbjct: 361 AHKFMGRPRLERADF----ASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRI 420

Query: 421 PYQQKRMFGFVTFVYPETVKHILAKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQPQLE 480
           PYQQKRMFGFVTFVYPETVK ILAKGNPHFIC++RVLVKPYKEKGKVP+K ++  QP  E
Sbjct: 421 PYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQHQPG-E 480

Query: 481 RGDFSPCLSPSGLDARDPYDLN-LGARMMYNTQG---MMLRRKLEEQ---AELQQALELQ 540
           R DFS C +P+GLDARDP+D++ LGARM+ ++     M+LRRKLEEQ   AELQQA+EL 
Sbjct: 481 RVDFSSCTTPTGLDARDPFDMHQLGARMLQHSNSANEMLLRRKLEEQQQAAELQQAIELH 540

Query: 541 GRRLLNLQLPDLKNDQLHHHHPHNLPICSPLSTESHNQMNQNIYPPDFINQEASEG---- 600
            RRL+ LQL D K+           PI +P S            PPD        G    
Sbjct: 541 SRRLMGLQLLDFKS----RAAAAPTPIGNPFSASQTAANATGESPPDSGELGKGSGFLLA 600

Query: 601 HENNQVTTNNAMSTPQNFQLEENPCFIQSKAMDDGYNSKLLEIHKSVEQVLPDSPFASPK 622
           H+      +   ST ++                   +S   +  +SVE  LPDSPFASP 
Sbjct: 601 HKKAVNGADKEESTGES-------------------SSPNTDSDQSVEHNLPDSPFASPT 625

[Close]

BLAST of Carg25437 vs. Swiss-Prot
Match: sp|Q10M00|C3H22_ORYSJ (Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0328900 PE=2 SV=2)

HSP 1 Score: 340.5 bits (872), Expect = 4.1e-92
Identity = 283/702 (40.31%), Postives = 362/702 (51.57%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MDAYEA+ +V+++I+ L+P++A+KIMG LLIQD GDKE+IRLAFGPE LLHS++ +A+  
Sbjct: 1   MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60

Query: 61  LGF---------------SLNSXXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXX 120
           L                 + +S          XXXXXXX   XXXXXXXXXXXX      
Sbjct: 61  LAXXXXXXXXXXXXXXXPAAHSPFLLSRQNSGXXXXXXXXXXXXXXXXXXXXXXPFSRSN 120

Query: 121 XXXXSFSGITNNVISPKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLS 180
                  G    +ISP ++             + PPF       G   + ++ Q+ + L+
Sbjct: 121 GSVDEVVGAGEELISPANSG-------GGAAANAPPFFPR----GGDVLLDDFQLQEQLA 180

Query: 181 FLNESSSSRGEQNWSQSMDNAET----------------------PFHRRSYSASDVCFG 240
           FLNE   +       Q  D AE                       P HRRS S +++C G
Sbjct: 181 FLNEGGVNPSHP--LQGFDGAECRSPGPGEGGGMFPYGLGWANGGPGHRRSASVNELCLG 240

Query: 241 SEDGGFGVGYKPCLYFARGFCKNGSNCKFLHGDFPDLVDPSAAIVGSPSKLEGLFDQR-E 300
                 G G+KPCLY+ARGFCKNGS+C+F+HG      D +AA+ G+         Q+ +
Sbjct: 241 GGSSD-GFGWKPCLYYARGFCKNGSSCRFVHG------DDAAALTGAAMDAATAEQQQCQ 300

Query: 301 EFMRYKAAQQQRLATASEFMAGV---SPSQYNKYIN----FLLQQQNETHRATAAALMMG 360
           +F+    +Q+   A       G    SPS   K ++                        
Sbjct: 301 DFLLRSKSQRLGPAAFPYSPTGSLPGSPSAATKCLSXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 DEYQKF-GISRNERNDFLALAAEKRNSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDV 420
            E  KF G  R +R DF    A   N  SRQIYLTFPADSTF++EDVS YFS +GPV DV
Sbjct: 361 XEAHKFMGRPRLDRVDF----ASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDV 420

Query: 421 RIPYQQKRMFGFVTFVYPETVKHILAKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQPQ 480
           RIPYQQKRMFGFVTFVYPETVK ILAKGNPHFIC++RVLVKPYKEKGKVP+K ++HQ   
Sbjct: 421 RIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKHQ--- 480

Query: 481 LERGDFSPCLSPSGLDARDPYDLN-LGARMMY---NTQGMMLRRKLEE---QAELQQALE 540
              GDFS C +P+GLD RDP+DL+ LGARM+    +T  MMLRRKLEE    AELQQA+E
Sbjct: 481 ---GDFSGCTTPTGLDGRDPFDLHQLGARMLQHSNSTNEMMLRRKLEEXXXAAELQQAIE 540

Query: 541 LQGRRLLNLQLPDLKN---DQLHHHHPHNLPICSPLSTESHNQMNQNIYPPDFINQEASE 600
           L  RRL++LQL DLKN     +       +P  +   +           PPD   Q    
Sbjct: 541 LHSRRLMDLQLLDLKNRAAAAVTTAMAMTIPTANAFGSSQPLATTMVESPPDSGEQLKGT 600

Query: 601 GHENNQVTTNNAMSTPQNFQLEENPCFIQSKAMDDGYNSKLLEIHKSVEQVLPDSPFASP 647
           G+   +    N                   K    G  S   +  +S+E  LPDSPFASP
Sbjct: 601 GYFTEERKMVNGGG---------------DKEESAGEASLNADSDQSLEHNLPDSPFASP 656

[Close]

BLAST of Carg25437 vs. Swiss-Prot
Match: sp|Q9SV09|C3H46_ARATH (Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN=At3g51950 PE=1 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.9e-89
Identity = 256/646 (39.63%), Postives = 327/646 (50.62%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MD YEA+ +V ++I++L+PENASKIMG LL+QD G+KE+IRLAFGPETL+HS+I+KAK  
Sbjct: 1   MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60

Query: 61  LGFSLNSXXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXXXXXXSFSGITNNVIS 120
           LG                                                          
Sbjct: 61  LGL--------------------------------------------------------- 120

Query: 121 PKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSSSRGEQNWS 180
                    +C R+P       +  KN  G    S  P    +  + N   SSR   N  
Sbjct: 121 --------MNCSRSPWSHQDELISPKNNRGS---SLNPASLPF--YANGGRSSRDLTNDF 180

Query: 181 QSMD---NAETPFHRRSYSASDVC------FGSEDGGFGVGYKPCLYFARGFCKNGSNCK 240
           + MD   +  T F    ++ S  C      +G  D   G G  PC YFARGFCKNG++C+
Sbjct: 181 ELMDDMNSRSTDFLGSVHARSGSCVLDGLGYGG-DSDLGFGGVPCSYFARGFCKNGASCR 240

Query: 241 FLHGDFPDLVDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATASEFMAGVS-PSQY 300
           F+H       D  A +VGSPS++        E +R  +   +    A  FM   S PS  
Sbjct: 241 FVHS------DGGADLVGSPSRI--------ELLRSNSVPPR---LAHHFMTRSSLPSFS 300

Query: 301 NKYINFLLQQQNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKRNSASRQIYLTF 360
            K +N    QQN+  RA AAALM+GDE QK G  R ER D  A+A      ASRQIYLTF
Sbjct: 301 TKGVNL---QQNDVQRA-AAALMIGDELQKLGRWRPERIDLSAMAC----PASRQIYLTF 360

Query: 361 PADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHILAKGNPHFICES 420
           PADS F++EDVS YFS FGPVQDVRIPYQQKRMFGFVTFVYPETVK ILAKGNPHF+C+S
Sbjct: 361 PADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCDS 420

Query: 421 RVLVKPYKEKGKVPEKRQQHQQPQLERGDFSPCLSPSGLDARDPYDLNLGARMMY-NTQG 480
           RVLVKPYKEKGKVP+K + +Q  + E       LSP+GLD+  P D+ LG R  Y NTQ 
Sbjct: 421 RVLVKPYKEKGKVPDKYRTNQTTERE-------LSPTGLDS-SPRDV-LGGRGFYNNTQD 480

Query: 481 MMLRRKLEEQAELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSPLSTESHNQMN 540
           ++ R K EE     + LELQ RRL+NLQL D+K          +  + SP +  S N  +
Sbjct: 481 VLWRSKFEE-----EILELQSRRLMNLQLLDVKK---------HFQLNSPTNIHSPNPFS 497

Query: 541 QNIYPP---DFINQEASEGHENNQVTTNNAMSTPQNFQLEENPCFIQSKAMDDGYNSKLL 600
           Q++  P     I +E   G +                            +  +G +   +
Sbjct: 541 QSLISPRPLSVIKREYDGGEKG-------------------------KGSSKEGSDDDTM 497

Query: 601 EIHKSVEQVLPDSPFASPKKSASSQHLDFSSVKADGCGPNTLPSSS 633
            + + +E  LPDSPFASP     + HL   +  AD  G +    SS
Sbjct: 601 NLPERLEDSLPDSPFASP-----AHHLLLFADSADNNGSDLWSPSS 497

[Close]

BLAST of Carg25437 vs. Swiss-Prot
Match: sp|Q10LZ9|C3H23_ORYSJ (Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0329200 PE=2 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 8.3e-85
Identity = 250/697 (35.87%), Postives = 340/697 (48.78%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MDAYEA+ +V+++I+ L+P++A+KIMG LLIQD GDKE+IRLAFGPE LLHS++ +A+  
Sbjct: 1   MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60

Query: 61  LGF----SLNSXXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXXXXXXSFSGITN 120
           L         S                                             G  +
Sbjct: 61  LALLPPPQAASSSPTVPAAHSPFLLSRQNSGRCPAPSPSSWAQAQPFSRSNSMGNGGAAD 120

Query: 121 NVISPKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSSSRGE 180
            ++      +   +           F       G   + ++ ++ + L+FL++ +     
Sbjct: 121 EMVGAGEELMSPLNXXXXXXXXXXXFFPR----GGDALLDDFELQEQLAFLHDGAGGVNP 180

Query: 181 QNWSQSMDNAET----------------------PFHRRSYSASDVCFGSEDGGFGVGYK 240
            +  Q+ D AE                       P HRRS S +++C     GG G G+K
Sbjct: 181 GHALQAFDGAECRSPGPGESGGMLPYGLAWANGGPGHRRSASVNELCL----GGDGFGWK 240

Query: 241 PCLYFARGFCKNGSNCKFLHGDFPDLVDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQR 300
           PCLY+ARGFCKNGS C+F+HG   D     AA+  + ++ +    Q ++F+    +Q+  
Sbjct: 241 PCLYYARGFCKNGSTCRFVHGGLSD----DAAMDATTAEQQ----QCQDFLLRSKSQRLG 300

Query: 301 LATASEFMAG---VSPSQYNKYIN------FLLQQQNETHRATAAALMMGDEYQKFGISR 360
            A       G    SPS  +K ++                            ++  G  R
Sbjct: 301 PAAFPFTPTGSLPASPSATSKCLSXXXXXXXXXXXXXXXXXXXXXXXXXXXAHKFMGRPR 360

Query: 361 NERNDFLALAAEKRNSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFG 420
            +R DF    A   N  SRQIYLTFPADSTF++EDVS YFS +GPV DVRIPYQQKRMFG
Sbjct: 361 LDRVDF----ASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFG 420

Query: 421 FVTFVYPETVKHILAKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQPQLERGDFSPCLS 480
           FVTFVYPETVK ILAKGNPHFIC++RVLVKPYKEKGKVP+K ++ QQ     GDF  C+S
Sbjct: 421 FVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQQ-----GDFC-CMS 480

Query: 481 PSGLDARDPYDLN-LGARMMYNTQG---MMLRRKLEEQ---AELQQALELQGRRLLNLQL 540
           P+GLDARDP+D + LGARM+ ++     +MLRRKLEEQ   AELQQA++L  RRL+ LQL
Sbjct: 481 PTGLDARDPFDFHQLGARMLQHSNSANELMLRRKLEEQQQAAELQQAIDLHSRRLIGLQL 540

Query: 541 PDLKNDQLHHHHPHN-----LPICSPLSTESHNQMNQNIYPPDFINQ-EASEGHENNQVT 600
            DLK+    H           PI +  ++           PP    Q  AS G  +    
Sbjct: 541 LDLKSSAAVHAAETTTMSLPTPITNAFTSGQPGATTIVESPPSSTGQLMASCGSPSEGKV 600

Query: 601 TNNAMSTPQNFQLEENPCFIQSKAMDDGYNSKLLEIHKSVEQVLPDSPFASPKKSASSQH 650
            N                   +KA   G  ++  +  +S E  LPDSPFAS  KS +   
Sbjct: 601 VNGG-----------------NKADSAGEVTRNADSDQSGEHNLPDSPFASSTKSTA--F 652

[Close]

BLAST of Carg25437 vs. TrEMBL
Match: tr|A0A0A0M077|A0A0A0M077_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616250 PE=4 SV=1)

HSP 1 Score: 1080.5 bits (2793), Expect = 0.0e+00
Identity = 562/675 (83.26%), Postives = 581/675 (86.07%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MDAYEA++LVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH
Sbjct: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60

Query: 61  LGFSLNSXXXXXXXXXXXXXXXXXAR--------PXXXXXXXXXXXXXXXXXXXXXXSFS 120
           LGF LNS                 +         P                      S S
Sbjct: 61  LGFPLNSSSSTPSSPSPLNPIARPSNSNPFSQSSPRIPNNGFDLTKNPSSPSTTGSWSLS 120

Query: 121 GITNNVISPKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSS 180
           GITNNVISPKS+ LLSYD IRA PFSMPPF+QHKNGF DSEV EEPQVN+YLSFLNESSS
Sbjct: 121 GITNNVISPKSSPLLSYDSIRAAPFSMPPFMQHKNGFVDSEVIEEPQVNEYLSFLNESSS 180

Query: 181 SRGE-------------QNWSQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240
           SRGE             QNW+QSMDNA+TPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF
Sbjct: 181 SRGEDLVDPRMELGRGLQNWTQSMDNADTPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240

Query: 241 ARGFCKNGSNCKFLHGDFPDLVDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATAS 300
           ARGFCKNGSNCKFLHGDF D VDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATAS
Sbjct: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATAS 300

Query: 301 EFMAGVSPSQYNKYINFLLQQQNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKR 360
           E MAGVSPSQYNKYINFLLQQQNE HRATAAALMMGDEY KFG+SR+ERNDFLALAAEKR
Sbjct: 301 ELMAGVSPSQYNKYINFLLQQQNENHRATAAALMMGDEYHKFGMSRSERNDFLALAAEKR 360

Query: 361 NSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHIL 420
           NSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVK+IL
Sbjct: 361 NSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKNIL 420

Query: 421 AKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQPQLERGDFSPCLSPSGLDARDPYDLNL 480
           AKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQ QL+RGDFSPCLSPSGLDARDPYDLNL
Sbjct: 421 AKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQQQLDRGDFSPCLSPSGLDARDPYDLNL 480

Query: 481 GARMMY-NTQGMMLRRKLEEQAELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICS 540
           GARMMY NTQGMMLRRKLEEQ ELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPIC+
Sbjct: 481 GARMMYNNTQGMMLRRKLEEQVELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICA 540

Query: 541 PLSTESHNQMNQNIYPPDFINQEASEGHENNQVTTNNAMSTPQNFQLEENPCFIQS---- 600
           PLS ESHNQMNQNI+PPDFIN EASEGHENNQ+ TNNA+ST QNFQLEEN CFIQS    
Sbjct: 541 PLSIESHNQMNQNIFPPDFINPEASEGHENNQLATNNAISTQQNFQLEENLCFIQSNSGG 600

Query: 601 KAMDDGYNSKLLEIHKSVEQVLPDSPFASPKKSASSQHLDFSSVKADGCGPNTLPSSSQS 650
           KA +DGYNS+LLEIHKSVEQVLPDSPFASPKKSA  QH D SSVK DGCGPNTLPSSSQS
Sbjct: 601 KATEDGYNSELLEIHKSVEQVLPDSPFASPKKSALGQHSDISSVKGDGCGPNTLPSSSQS 660

[Close]

BLAST of Carg25437 vs. TrEMBL
Match: tr|A0A1S4DYU9|A0A1S4DYU9_CUCME (zinc finger CCCH domain-containing protein 46-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492010 PE=4 SV=1)

HSP 1 Score: 1072.4 bits (2772), Expect = 3.9e-310
Identity = 552/657 (84.02%), Postives = 570/657 (86.76%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MDAYEA++LVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH
Sbjct: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60

Query: 61  LGFSLNS--------XXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXXXXXXSFS 120
           LGF LNS                         + P                      S S
Sbjct: 61  LGFPLNSSSSTPSSPSPLNPIARPLNSNPFSQSSPRIPNNGFDLTKNPSSPSTTSSWSLS 120

Query: 121 GITNNVISPKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSS 180
           GITNNVISPKS+ LLSYD IRA PFSMPPF+QHKNGF DSEV EEPQVNDYLSFLNESSS
Sbjct: 121 GITNNVISPKSSPLLSYDSIRAAPFSMPPFMQHKNGFVDSEVIEEPQVNDYLSFLNESSS 180

Query: 181 SRGE-------------QNWSQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240
           SRGE             QNW+QSMDNA+TPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF
Sbjct: 181 SRGEDLVDPRTELGRGLQNWTQSMDNADTPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240

Query: 241 ARGFCKNGSNCKFLHGDFPDLVDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATAS 300
           ARGFCKNGSNCKFLHGDF D VDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATAS
Sbjct: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATAS 300

Query: 301 EFMAGVSPSQYNKYINFLLQQQNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKR 360
           E MAGVSPSQYNKYINFLLQQQNE HRATAAALMMGDEY KFG+SR+ERNDFLALAAEKR
Sbjct: 301 ELMAGVSPSQYNKYINFLLQQQNENHRATAAALMMGDEYHKFGMSRSERNDFLALAAEKR 360

Query: 361 NSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHIL 420
           NSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVK+IL
Sbjct: 361 NSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKNIL 420

Query: 421 AKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQPQLERGDFSPCLSPSGLDARDPYDLNL 480
           AKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQ QL+RGDFSPCLSPSGLDARDPYDLNL
Sbjct: 421 AKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQQQLDRGDFSPCLSPSGLDARDPYDLNL 480

Query: 481 GARMMYNTQGMMLRRKLEEQAELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSP 540
           GARMMYNTQGMMLRRKLEEQ ELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPIC+P
Sbjct: 481 GARMMYNTQGMMLRRKLEEQVELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICAP 540

Query: 541 LSTESHNQMNQNIYPPDFINQEASEGHENNQVTTNNAMSTPQNFQLEENPCFIQS----K 600
           LS ESHNQMNQNI+PPDFINQEASEGHENNQ+ TNNA+ST QNFQLEENPCF+QS    K
Sbjct: 541 LSIESHNQMNQNIFPPDFINQEASEGHENNQLATNNAISTQQNFQLEENPCFVQSNSGGK 600

Query: 601 AMDDGYNSKLLEIHKSVEQVLPDSPFASPKKSASSQHLDFSSVKADGCGPNTLPSSS 633
           A +DGYNS+LLEIHKSVEQVLPDSPFASPKKSA  QH D SSVKADGCGPNTLPSSS
Sbjct: 601 ATEDGYNSELLEIHKSVEQVLPDSPFASPKKSALGQHSDISSVKADGCGPNTLPSSS 657

[Close]

BLAST of Carg25437 vs. TrEMBL
Match: tr|A0A1S4DY42|A0A1S4DY42_CUCME (zinc finger CCCH domain-containing protein 46-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492010 PE=4 SV=1)

HSP 1 Score: 968.4 bits (2502), Expect = 8.1e-279
Identity = 514/657 (78.23%), Postives = 532/657 (80.97%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           MDAYEA++LVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH
Sbjct: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60

Query: 61  LGFSLNS--------XXXXXXXXXXXXXXXXXARPXXXXXXXXXXXXXXXXXXXXXXSFS 120
           LGF LNS                         + P                      S S
Sbjct: 61  LGFPLNSSSSTPSSPSPLNPIARPLNSNPFSQSSPRIPNNGFDLTKNPSSPSTTSSWSLS 120

Query: 121 GITNNVISPKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDSEVSEEPQVNDYLSFLNESSS 180
           GITNNVISPKS+ LLSYD IRA PFSMPPF+QHKNGF DSEV EEPQVNDYLSFLNESSS
Sbjct: 121 GITNNVISPKSSPLLSYDSIRAAPFSMPPFMQHKNGFVDSEVIEEPQVNDYLSFLNESSS 180

Query: 181 SRGE-------------QNWSQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240
           SRGE             QNW+QSMDNA+TPFHRRSYSASDVCFGSEDGGFGVG       
Sbjct: 181 SRGEDLVDPRTELGRGLQNWTQSMDNADTPFHRRSYSASDVCFGSEDGGFGVG------- 240

Query: 241 ARGFCKNGSNCKFLHGDFPDLVDPSAAIVGSPSKLEGLFDQREEFMRYKAAQQQRLATAS 300
                                            KLEGLFDQREEFMRYKAAQQQRLATAS
Sbjct: 241 ---------------------------------KLEGLFDQREEFMRYKAAQQQRLATAS 300

Query: 301 EFMAGVSPSQYNKYINFLLQQQNETHRATAAALMMGDEYQKFGISRNERNDFLALAAEKR 360
           E MAGVSPSQYNKYINFLLQQQNE HRATAAALMMGDEY KFG+SR+ERNDFLALAAEKR
Sbjct: 301 ELMAGVSPSQYNKYINFLLQQQNENHRATAAALMMGDEYHKFGMSRSERNDFLALAAEKR 360

Query: 361 NSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKHIL 420
           NSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVK+IL
Sbjct: 361 NSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVKNIL 420

Query: 421 AKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQPQLERGDFSPCLSPSGLDARDPYDLNL 480
           AKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQ QL+RGDFSPCLSPSGLDARDPYDLNL
Sbjct: 421 AKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQQQLDRGDFSPCLSPSGLDARDPYDLNL 480

Query: 481 GARMMYNTQGMMLRRKLEEQAELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICSP 540
           GARMMYNTQGMMLRRKLEEQ ELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPIC+P
Sbjct: 481 GARMMYNTQGMMLRRKLEEQVELQQALELQGRRLLNLQLPDLKNDQLHHHHPHNLPICAP 540

Query: 541 LSTESHNQMNQNIYPPDFINQEASEGHENNQVTTNNAMSTPQNFQLEENPCFIQS----K 600
           LS ESHNQMNQNI+PPDFINQEASEGHENNQ+ TNNA+ST QNFQLEENPCF+QS    K
Sbjct: 541 LSIESHNQMNQNIFPPDFINQEASEGHENNQLATNNAISTQQNFQLEENPCFVQSNSGGK 600

Query: 601 AMDDGYNSKLLEIHKSVEQVLPDSPFASPKKSASSQHLDFSSVKADGCGPNTLPSSS 633
           A +DGYNS+LLEIHKSVEQVLPDSPFASPKKSA  QH D SSVKADGCGPNTLPSSS
Sbjct: 601 ATEDGYNSELLEIHKSVEQVLPDSPFASPKKSALGQHSDISSVKADGCGPNTLPSSS 617

[Close]

BLAST of Carg25437 vs. TrEMBL
Match: tr|A0A2P5CDF9|A0A2P5CDF9_PARAD (Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_162180 PE=4 SV=1)

HSP 1 Score: 649.8 bits (1675), Expect = 6.4e-183
Identity = 390/684 (57.02%), Postives = 485/684 (70.91%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           M +YEA+++++ K+KNL+PENA+KI+G++LIQDL +K+L+RLAFGP++LLHSL+++AK H
Sbjct: 1   MASYEATNIIFTKVKNLDPENATKIIGYILIQDLAEKDLVRLAFGPDSLLHSLVIRAKIH 60

Query: 61  LGFSLNSXXXXXXXXXXXXXXXXXARP------------XXXXXXXXXXXXXXXXXXXXX 120
           LG   N+ XXXXXXXXXXXXXXX ARP                                 
Sbjct: 61  LGLGSNTSXXXXXXXXXXXXXXXIARPSNSGSNSNPFSQSSPRIPNGFDFKNPSSPSSNS 120

Query: 121 XSFSGITNNVI-SPKSTSLLSYDCIRAPPFSMPPFLQHKNGFGDS----EVSEEPQVNDY 180
              SG +NN I SPKS+ LLSYD IR   F +P       G GD+    ++ +E Q+++Y
Sbjct: 121 WPLSGFSNNPISSPKSSPLLSYDNIRTGSFPVPVHHYKDGGGGDAATGGDLIDEHQLSEY 180

Query: 181 LSFLNESSS--------------SRGEQNWSQSMDNAETPFHRRSYSASDVCFGSEDGGF 240
           LSFLNESSS               RG Q+W  S+ N +  FHRRSYSAS+V FGSED G 
Sbjct: 181 LSFLNESSSFPRPEDLVDPRLELGRGVQDWGHSVSNGDAHFHRRSYSASEVSFGSEDSGL 240

Query: 241 GVGYKPCLYFARGFCKNGSNCKFLHGDFPDLVDPSAAIVGSPSKLEGLFDQREEFMRYKA 300
           G+GYKPCLYFARGFCKNGSNCKF+HG F D VDPS AIVGSPSK +G F+Q EE MR KA
Sbjct: 241 GIGYKPCLYFARGFCKNGSNCKFVHGGFGDAVDPSGAIVGSPSKFDG-FEQHEEMMRLKA 300

Query: 301 AQQ-QRLATASEFMAGVSPSQYNKYINFLLQQQNETHRATAA-ALMMGDEYQKFGISRNE 360
           A+Q QRLA AS+ MAGVSPS  NKY++FLLQQQN+  RA AA AL MG+++ KFG  R E
Sbjct: 301 AEQHQRLAAASQLMAGVSPSVCNKYMHFLLQQQNDPQRAAAASALTMGEDFYKFGRCRPE 360

Query: 361 RNDFLAL-AAEKRNSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGF 420
           RNDF +L AAEK NSASRQIYLTFPA+STFKDEDVSEYF+KFGPVQDVRIPYQQKRMFGF
Sbjct: 361 RNDFFSLSAAEKMNSASRQIYLTFPAESTFKDEDVSEYFNKFGPVQDVRIPYQQKRMFGF 420

Query: 421 VTFVYPETVKHILAKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQPQLERGDFSPCLSP 480
           VTFV+PETV+ IL+KGNPHFIC+SRVLVKPYKEKGKV +KRQQHQQ QLERG+ S CLSP
Sbjct: 421 VTFVHPETVRFILSKGNPHFICDSRVLVKPYKEKGKVLDKRQQHQQQQLERGELSMCLSP 480

Query: 481 SGLDARDPYDLNLGARMMYNTQGMMLRRKLEEQAELQQALELQGRRLLNLQLPDLKNDQL 540
           SGL++R+  DL+LG RM YNTQ ++LRRKL EQA+LQQA+ELQGRRL+NLQLP+ KND+L
Sbjct: 481 SGLESREACDLHLGGRMFYNTQDILLRRKL-EQADLQQAIELQGRRLMNLQLPEFKNDRL 540

Query: 541 HHHHPHNLPICS--PLSTESHNQMNQN-IYPPDFINQEASEGHE---NNQVTTNNAMSTP 600
           HHH   +L + +  PL  +S +  +QN I P D   +E +E  +    + V+   A++  
Sbjct: 541 HHHQ-RSLSVGAPVPLPPQSLSLSSQNVILPFDGTKEEVAEDCDESTTSAVSVTYAVAVQ 600

Query: 601 QNFQLEENPCFIQSKAMDDGYNSKLLEIHKSVEQVLPDSPFASPKKSASSQHLDFSSVKA 645
              Q E+ PC IQ+   D       L++ +SVEQVLPD+ FASP K+A  Q  DFS+  A
Sbjct: 601 LQQQEEDLPC-IQNDGKDQVPGD--LDLRRSVEQVLPDNLFASPTKAAGDQLSDFSTAVA 660

[Close]

BLAST of Carg25437 vs. TrEMBL
Match: tr|A0A2P5EUC6|A0A2P5EUC6_9ROSA (Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_149900 PE=4 SV=1)

HSP 1 Score: 629.0 bits (1621), Expect = 1.2e-176
Identity = 378/680 (55.59%), Postives = 472/680 (69.41%), Query Frame = 0


Query: 1   MDAYEASSLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60
           M +YEA+++++ K+KNL+PENA+KI+G++LIQDL +K+L+RLAFGP++LLHSL+++AK H
Sbjct: 1   MASYEATNIIFTKVKNLDPENATKIIGYILIQDLAEKDLVRLAFGPDSLLHSLVIRAKIH 60

Query: 61  LGFSLNSXXXXXXXXXXXXXXXXXARP------------XXXXXXXXXXXXXXXXXXXXX 120
           LG   N+ XXXXXXXXXXXXXXX ARP                                 
Sbjct: 61  LGLGSNTSXXXXXXXXXXXXXXXIARPSNSGSNSNPFSQSSPRIPNGFDFKNPSSPSSNS 120

Query: 121 XSFSGITNNVI-SPKSTSLLSYDCIRAPPFSMP----PFLQHKNGFGDSEVSEEPQVNDY 180
              SG TNN I SPKS+ LLSYD IR   F +P                ++ +E Q+++Y
Sbjct: 121 WPLSGFTNNPISSPKSSPLLSYDNIRTGSFPVPVHXXXXXXXXXXXXXGDLIDEHQLSEY 180

Query: 181 LSFLNESSS--------------SRGEQNWSQSMDNAETPFHRRSYSASDVCFGSEDGGF 240
           LSFLNESSS               RG Q+W  S+ N +  FHRRSYSAS+V FGSED G 
Sbjct: 181 LSFLNESSSFPRPEDLVDPRLELGRGVQDWGHSVSNGDAHFHRRSYSASEVSFGSEDSGL 240

Query: 241 GVGYKPCLYFARGFCKNGSNCKFLHGDFPDLVDPSAAIVGSPSKLEGLFDQREEFMRYKA 300
           G+GYKPCLYFARGFCKNGSNCKF+HG F D VDPS AIVGSPSK +G F+Q EE MR KA
Sbjct: 241 GIGYKPCLYFARGFCKNGSNCKFVHGGFGDAVDPSGAIVGSPSKFDG-FEQHEEMMRLKA 300

Query: 301 AQQ-QRLATASEFMAGVSPSQYNKYINFLLQQQ-NETHRATAAALMMGDEYQKFGISRNE 360
           AQQ QRLA AS+ MAGVSPS  NKY++FLLQQQ            MMG+++ KFG  R E
Sbjct: 301 AQQHQRLAAASQLMAGVSPSVCNKYMHFLLQQQXXXXXXXXXXXXMMGEDFYKFGRCRPE 360

Query: 361 RNDFLAL-AAEKRNSASRQIYLTFPADSTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGF 420
           RNDF ++ AAEK NSASRQIYLTFPA+STFKDEDVSEYF+KFGPVQDVRIPYQQKRMFGF
Sbjct: 361 RNDFFSMSAAEKMNSASRQIYLTFPAESTFKDEDVSEYFNKFGPVQDVRIPYQQKRMFGF 420

Query: 421 VTFVYPETVKHILAKGNPHFICESRVLVKPYKEKGKVPEKRQQHQQPQLERGDFSPCLSP 480
           VTFV+PETV+ IL+KGNPHFIC+SRVLVKPYKEKGKV +KRQQHQQ QLERG+ S CLSP
Sbjct: 421 VTFVHPETVRFILSKGNPHFICDSRVLVKPYKEKGKVLDKRQQHQQQQLERGELSTCLSP 480

Query: 481 SGLDARDPYDLNLGARMMYNTQGMMLRRKLEEQAELQQALELQGRRLLNLQLPDLKNDQL 540
           SGL++R+ YDL+ G RM YNTQ ++LRRKL EQA+LQQA+ELQGRRL+NLQLP+ KND+L
Sbjct: 481 SGLESREAYDLHFGGRMFYNTQDILLRRKL-EQADLQQAIELQGRRLMNLQLPEFKNDRL 540

Query: 541 HHHHPHNLPICS--PLSTESHNQMNQN-IYPPDFINQEASEGHE---NNQVTTNNAMSTP 600
           HHH   +L + +  PL  +S +  +QN I P D   +E +E       + V+  +A++  
Sbjct: 541 HHHQ-RSLSVGAPVPLPPQSLSLSSQNVILPFDGTKEEVAEDCNESFTSAVSVTSAVAVQ 600

Query: 601 QNFQLEENPCFIQSKAMDDGYNSKLLEIHKSVEQVLPDSPFASPKKSASSQHLDFSSVKA 641
              Q E++PC IQ+   +   +   L++ +SVEQVLPD+ FASP K+A     DFS+  A
Sbjct: 601 LQQQEEDSPC-IQNDGKEQAPDD--LDLRRSVEQVLPDNLFASPTKAAGDHLSDFSTAVA 660

The following BLAST results are available for this feature:

BLAST of Carg25437 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930497.1	0.0e+00	99.54	zinc finger CCCH domain-containing protein 55 [Cucurbita moschata] >XP_022930505...	[more]
XP_023531272.1	0.0e+00	98.61	zinc finger CCCH domain-containing protein 55 [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_022967012.1	0.0e+00	97.70	zinc finger CCCH domain-containing protein 55 [Cucurbita maxima]	[more]
XP_011660149.1	0.0e+00	83.26	PREDICTED: zinc finger CCCH domain-containing protein 46-like [Cucumis sativus] ...	[more]
XP_016900900.1	5.9e-310	84.02	PREDICTED: zinc finger CCCH domain-containing protein 46-like isoform X1 [Cucumi...	[more]

BLAST of Carg25437 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G21100.2	1.0e-109	41.49	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G12440.1	5.2e-106	42.10	CCCH-type zinc fingerfamily protein with RNA-binding domain	[more]
AT3G51950.1	1.1e-90	39.63	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ...	[more]
AT1G51520.2	1.1e-68	33.60	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G63450.3	7.4e-52	31.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg25437 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94CJ8\|C3H55_ARATH	9.4e-105	42.10	Zinc finger CCCH domain-containing protein 55 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q0D3J9\|C3H53_ORYSJ	6.1e-96	40.38	Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|Q10M00\|C3H22_ORYSJ	4.1e-92	40.31	Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|Q9SV09\|C3H46_ARATH	1.9e-89	39.63	Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q10LZ9\|C3H23_ORYSJ	8.3e-85	35.87	Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Carg25437 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M077\|A0A0A0M077_CUCSA	0.0e+00	83.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616250 PE=4 SV=1	[more]
tr\|A0A1S4DYU9\|A0A1S4DYU9_CUCME	3.9e-310	84.02	zinc finger CCCH domain-containing protein 46-like isoform X1 OS=Cucumis melo OX...	[more]
tr\|A0A1S4DY42\|A0A1S4DY42_CUCME	8.1e-279	78.23	zinc finger CCCH domain-containing protein 46-like isoform X2 OS=Cucumis melo OX...	[more]
tr\|A0A2P5CDF9\|A0A2P5CDF9_PARAD	6.4e-183	57.02	Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_1621...	[more]
tr\|A0A2P5EUC6\|A0A2P5EUC6_9ROSA	1.2e-176	55.59	Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_149900 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR036855	Znf_CCCH_sf
IPR034365	AtC3H46-like_RRM
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR000571	Znf_CCCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25437-RA	Carg25437-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 212..236 e-value: 6.8E-5 score: 32.3
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 213..235 e-value: 2.7E-6 score: 27.0
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 210..237 score: 14.277
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 345..415 e-value: 6.1E-10 score: 49.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 356..403 e-value: 1.6E-7 score: 30.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 344..420 score: 10.326
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 336..440 e-value: 3.2E-12 score: 48.7
None	No IPR available	GENE3D	G3DSA:4.10.1000.10		coord: 212..285 e-value: 1.1E-5 score: 27.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 597..649
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 623..640
None	No IPR available	PANTHER	PTHR24009	FAMILY NOT NAMED	coord: 1..621
None	No IPR available	PANTHER	PTHR24009:SF11	SUBFAMILY NOT NAMED	coord: 1..621
IPR034365	AtC3H46-like, RNA recognition motif	CDD	cd12458	RRM_AtC3H46_like	coord: 346..415 e-value: 5.36503E-40 score: 139.895
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	SSF90229	CCCH zinc finger	coord: 213..235
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 356..438

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25437	Cla006321	Watermelon (97103) v1	carwmB0421
Carg25437	Csa1G616250	Cucumber (Chinese Long) v2	carcuB0457
Carg25437	MELO3C015165	Melon (DHL92) v3.5.1	carmeB0432
Carg25437	ClCG03G013020	Watermelon (Charleston Gray)	carwcgB0417
Carg25437	CSPI01G30580	Wild cucumber (PI 183967)	carcpiB0462
Carg25437	CmaCh10G009150	Cucurbita maxima (Rimu)	carcmaB0589
Carg25437	CmaCh11G008610	Cucurbita maxima (Rimu)	carcmaB0590
Carg25437	CmoCh10G009560	Cucurbita moschata (Rifu)	carcmoB0574
Carg25437	CmoCh11G008710	Cucurbita moschata (Rifu)	carcmoB0575
Carg25437	Lsi06G005440	Bottle gourd (USVL1VR-Ls)	carlsiB385
Carg25437	Cp4.1LG04g12250	Cucurbita pepo (Zucchini)	carcpeB0596
Carg25437	Cp4.1LG18g01800	Cucurbita pepo (Zucchini)	carcpeB0595
Carg25437	CsGy1G029910	Cucumber (Gy14) v2	carcgybB0433
Carg25437	MELO3C015164.2	Melon (DHL92) v3.6.1	carmedB0434
Carg25437	CsaV3_1G043040	Cucumber (Chinese Long) v3	carcucB0458
Carg25437	Cla97C03G063230	Watermelon (97103) v2	carwmbB0448
Carg25437	Bhi02G001291	Wax gourd	carwgoB0510

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25437	Carg16926	Silver-seed gourd	carcarB439

The following block(s) are covering this gene:

None