Carg16926 (gene) Silver-seed gourd

Overview
NameCarg16926
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionzinc finger CCCH domain-containing protein 46-like isoform X1
LocationCucurbita_argyrosperma_scaffold_061 : 149315 .. 150335 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAGGAAGAAATATGGATGCTTATGAAGCTACTACTCTGGTTTATGCGAAGATCAAGAACTTGGAGCCTGAAAATGCTTCCAAAATCATGGGGTTTCTACTCATTCAAGACCTTGGCGATAAGGAGTTGATACGTTTGGCTTTTGGGCCTGATACCCTTTTGCATTCACTGATTTTGAAGGCCAAAGCTCATTTAGGGTTTACTTTCAACTCTTCTTCTTCAACACCCTCTTCGCCTTCGCCGCTTAATCCTATTGCACGACCTTCAAACAGTAACCCTTTCTCTCAATCTTCGCCTAGAATCCCTAATAATGGCTTTGACTTTAGTAAAAACCCTTCTTCTCCTTCTTCAACGGGTTCTTGGTCACTTTCAGGCATCACTAACAATGCCATTACCCCAAACTCCAGCCCCCTTCTCTCTTATGACAGCATTCGAGCTGCCCCTTTTCCAATGCCTCCATTTTTGCAGCACAAAAATGGGTTTGTGGATTCTGATGTCATTGAAGAGCCTCAAGTGAACGATTACCTTTCGTTTCTTAACGAGTCTTCTTCTTCAAGAGGTGAGGATTTGGTAGATCCAAGGATGGAATTAGGGCGTGGTTTGCAGAATTGGACGCAATCTATGGACAATGCTGAGACCCCTTTTCATAGAAGAAGCTATTCTGCTAGTGATGTTTGTTTTGGTTCTGAAGATGGTGGATTTGGAGTTGGGTATAAGCCTTGTCTTTACTTTGCTAGAGGCTTTTGTAAAAATGGTAGCAATTGCAAGTTCTTGCATGGCGATTTCTCTGATTCGGTTGATCCTTCTGCCGCCATTGTTGGTTCTCCTAGCAAACTAGAAAGCTTGTTTGAGCAGCGTGAGGAGTTGATGAGATATAAGGCTGCTGCTGCTCAGCAACAGCAGAGGTTGGCCACGGCGTCTGAGTTGATGGCGGGAGTATCACCTTCACAGTATAATAAGTATATCAATTTTCTACTTCAACAACAAAATGATACTCATAGGTATGATGGAGATAGCTAA

mRNA sequence

AAGAGGAAGAAATATGGATGCTTATGAAGCTACTACTCTGGTTTATGCGAAGATCAAGAACTTGGAGCCTGAAAATGCTTCCAAAATCATGGGGTTTCTACTCATTCAAGACCTTGGCGATAAGGAGTTGATACGTTTGGCTTTTGGGCCTGATACCCTTTTGCATTCACTGATTTTGAAGGCCAAAGCTCATTTAGGGTTTACTTTCAACTCTTCTTCTTCAACACCCTCTTCGCCTTCGCCGCTTAATCCTATTGCACGACCTTCAAACAGCATCACTAACAATGCCATTACCCCAAACTCCAGCCCCCTTCTCTCTTATGACAGCATTCGAGCTGCCCCTTTTCCAATGCCTCCATTTTTGCAGCACAAAAATGGGTTTGTGGATTCTGATGTCATTGAAGAGCCTCAAGTGAACGATTACCTTTCGTTTCTTAACGAGTCTTCTTCTTCAAGAGGTGAGGATTTGAATTGGACGCAATCTATGGACAATGCTGAGACCCCTTTTCATAGAAGAAGCTATTCTGCTAGTGATGTTTGTTTTGGTTCTGAAGATGGTGGATTTGGAGTTGGGTATAAGCCTTGTCTTTACTTTGCTAGAGGCTTTTGTAAAAATGGTAGCAATTGCAAGTTCTTGCATGGCGATTTCTCTGATTCGGTTGATCCTTCTGCCGCCATTGTTGGTTCTCCTAGCAAACTAGAAAGCTTGTTTGAGCAGCGTGAGGAGTTGATGAGATATAAGGCTGCTGCTGCTCAGCAACAGCAGAGGTTGGCCACGGCGTCTGAGTTGATGGCGGGAGTATCACCTTCACAGTATAATAAGTATATCAATTTTCTACTTCAACAACAAAATGATACTCATAGGTATGATGGAGATAGCTAA

Coding sequence (CDS)

ATGGATGCTTATGAAGCTACTACTCTGGTTTATGCGAAGATCAAGAACTTGGAGCCTGAAAATGCTTCCAAAATCATGGGGTTTCTACTCATTCAAGACCTTGGCGATAAGGAGTTGATACGTTTGGCTTTTGGGCCTGATACCCTTTTGCATTCACTGATTTTGAAGGCCAAAGCTCATTTAGGGTTTACTTTCAACTCTTCTTCTTCAACACCCTCTTCGCCTTCGCCGCTTAATCCTATTGCACGACCTTCAAACAGCATCACTAACAATGCCATTACCCCAAACTCCAGCCCCCTTCTCTCTTATGACAGCATTCGAGCTGCCCCTTTTCCAATGCCTCCATTTTTGCAGCACAAAAATGGGTTTGTGGATTCTGATGTCATTGAAGAGCCTCAAGTGAACGATTACCTTTCGTTTCTTAACGAGTCTTCTTCTTCAAGAGGTGAGGATTTGAATTGGACGCAATCTATGGACAATGCTGAGACCCCTTTTCATAGAAGAAGCTATTCTGCTAGTGATGTTTGTTTTGGTTCTGAAGATGGTGGATTTGGAGTTGGGTATAAGCCTTGTCTTTACTTTGCTAGAGGCTTTTGTAAAAATGGTAGCAATTGCAAGTTCTTGCATGGCGATTTCTCTGATTCGGTTGATCCTTCTGCCGCCATTGTTGGTTCTCCTAGCAAACTAGAAAGCTTGTTTGAGCAGCGTGAGGAGTTGATGAGATATAAGGCTGCTGCTGCTCAGCAACAGCAGAGGTTGGCCACGGCGTCTGAGTTGATGGCGGGAGTATCACCTTCACAGTATAATAAGTATATCAATTTTCTACTTCAACAACAAAATGATACTCATAGGTATGATGGAGATAGCTAA

Protein sequence

MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAHLGFTFNSSSSTPSSPSPLNPIARPSNSITNNAITPNSSPLLSYDSIRAAPFPMPPFLQHKNGFVDSDVIEEPQVNDYLSFLNESSSSRGEDLNWTQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKAAAAQQQQRLATASELMAGVSPSQYNKYINFLLQQQNDTHRYDGDS
Homology
[Close]
BLAST of Carg16926 vs. NCBI nr
Match: XP_023516508.1 (zinc finger CCCH domain-containing protein 46-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 525.0 bits (1351), Expect = 1.6e-145
Identity = 283/330 (85.76%), Postives = 284/330 (86.06%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH
Sbjct: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60

Query: 61  LGFTFNSSSSTPSSPSPLNPIARPSNS--------------------------------- 120
           LGFTFNSSSSTPSSPSPLNPIARPSNS                                 
Sbjct: 61  LGFTFNSSSSTPSSPSPLNPIARPSNSNPFSQSSPRIPNNGFDFSKNPSSPSSTGSWSLS 120

Query: 121 -ITNNAITPNSSPLLSYDSIRAAPFPMPPFLQHKNGFVDSDVIEEPQVNDYLSFLNESSS 180
            ITNNAI+PNSSPLLSYDSIRAAPFPMPPFLQHKNGFVDSDVIEEPQVNDYLSFLNESSS
Sbjct: 121 GITNNAISPNSSPLLSYDSIRAAPFPMPPFLQHKNGFVDSDVIEEPQVNDYLSFLNESSS 180

Query: 181 SRGEDL------------NWTQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240
           SRGEDL            NWTQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF
Sbjct: 181 SRGEDLVDPRMELGRGLQNWTQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240

Query: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKAAXXXXXXRLA 285
           ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKAAXXXXXXRLA
Sbjct: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKAAXXXXXXRLA 300

[Close]
BLAST of Carg16926 vs. NCBI nr
Match: XP_022961198.1 (zinc finger CCCH domain-containing protein 46-like [Cucurbita moschata])

HSP 1 Score: 524.6 bits (1350), Expect = 2.1e-145
Identity = 283/330 (85.76%), Postives = 284/330 (86.06%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH
Sbjct: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60

Query: 61  LGFTFNSSSSTPSSPSPLNPIARPSNS--------------------------------- 120
           LGFTFNSSSSTPSSPSPLNPIARPSNS                                 
Sbjct: 61  LGFTFNSSSSTPSSPSPLNPIARPSNSNPFSQSSPRIPNNGFDFSKNPSSPSSTGSWSLS 120

Query: 121 -ITNNAITPNSSPLLSYDSIRAAPFPMPPFLQHKNGFVDSDVIEEPQVNDYLSFLNESSS 180
            ITNNAITPNSSPLLSYDSIRAAPFPMPPFLQHKNGFVDS+VIEEPQVNDYLSFLNESSS
Sbjct: 121 GITNNAITPNSSPLLSYDSIRAAPFPMPPFLQHKNGFVDSNVIEEPQVNDYLSFLNESSS 180

Query: 181 SRGEDL------------NWTQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240
           SRGEDL            NWTQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF
Sbjct: 181 SRGEDLVDPRMELGRGLQNWTQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240

Query: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKAAXXXXXXRLA 285
           ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKAAXXXXXXRLA
Sbjct: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKAAXXXXXXRLA 300

[Close]
BLAST of Carg16926 vs. NCBI nr
Match: XP_022988039.1 (zinc finger CCCH domain-containing protein 55-like [Cucurbita maxima])

HSP 1 Score: 517.7 bits (1332), Expect = 2.5e-143
Identity = 276/330 (83.64%), Postives = 277/330 (83.94%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH
Sbjct: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60

Query: 61  LGFTFNSSSSTPSSPSPLNPIARPSNS--------------------------------- 120
           LGFTFNSSSSTPSSPSPLNPIARPSNS                                 
Sbjct: 61  LGFTFNSSSSTPSSPSPLNPIARPSNSNPFSQSSPRIPNNGFDFSKNPSSPSSTGSWSLS 120

Query: 121 -ITNNAITPNSSPLLSYDSIRAAPFPMPPFLQHKNGFVDSDVIEEPQVNDYLSFLNESSS 180
            ITNNAI+PNSSPLLSYDSIRAAPFPMP FLQHKNGFVDSDVIEEPQVNDYLSFLNESSS
Sbjct: 121 GITNNAISPNSSPLLSYDSIRAAPFPMPSFLQHKNGFVDSDVIEEPQVNDYLSFLNESSS 180

Query: 181 SRGEDL------------NWTQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240
           SRGEDL            NWTQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF
Sbjct: 181 SRGEDLVDPRMEIGRGLQNWTQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240

Query: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKAAXXXXXXRLA 285
           ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKAA      RLA
Sbjct: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKAA-AQQQQRLA 300

[Close]
BLAST of Carg16926 vs. NCBI nr
Match: XP_011660149.1 (PREDICTED: zinc finger CCCH domain-containing protein 46-like [Cucumis sativus] >KGN66507.1 hypothetical protein Csa_1G616250 [Cucumis sativus])

HSP 1 Score: 495.0 bits (1273), Expect = 1.8e-136
Identity = 262/330 (79.39%), Postives = 270/330 (81.82%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGP+TLLHSLILKAKAH
Sbjct: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60

Query: 61  LGFTFNSSSSTPSSPSPLNPIARPSNS--------------------------------- 120
           LGF  NSSSSTPSSPSPLNPIARPSNS                                 
Sbjct: 61  LGFPLNSSSSTPSSPSPLNPIARPSNSNPFSQSSPRIPNNGFDLTKNPSSPSTTGSWSLS 120

Query: 121 -ITNNAITPNSSPLLSYDSIRAAPFPMPPFLQHKNGFVDSDVIEEPQVNDYLSFLNESSS 180
            ITNN I+P SSPLLSYDSIRAAPF MPPF+QHKNGFVDS+VIEEPQVN+YLSFLNESSS
Sbjct: 121 GITNNVISPKSSPLLSYDSIRAAPFSMPPFMQHKNGFVDSEVIEEPQVNEYLSFLNESSS 180

Query: 181 SRGEDL------------NWTQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240
           SRGEDL            NWTQSMDNA+TPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF
Sbjct: 181 SRGEDLVDPRMELGRGLQNWTQSMDNADTPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240

Query: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKAAXXXXXXRLA 285
           ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLE LF+QREE MRYKAA      RLA
Sbjct: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLEGLFDQREEFMRYKAA---QQQRLA 300

[Close]
BLAST of Carg16926 vs. NCBI nr
Match: XP_016900900.1 (PREDICTED: zinc finger CCCH domain-containing protein 46-like isoform X1 [Cucumis melo])

HSP 1 Score: 494.2 bits (1271), Expect = 3.0e-136
Identity = 262/330 (79.39%), Postives = 269/330 (81.52%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGP+TLLHSLILKAKAH
Sbjct: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60

Query: 61  LGFTFNSSSSTPSSPSPLNPIARPSNS--------------------------------- 120
           LGF  NSSSSTPSSPSPLNPIARP NS                                 
Sbjct: 61  LGFPLNSSSSTPSSPSPLNPIARPLNSNPFSQSSPRIPNNGFDLTKNPSSPSTTSSWSLS 120

Query: 121 -ITNNAITPNSSPLLSYDSIRAAPFPMPPFLQHKNGFVDSDVIEEPQVNDYLSFLNESSS 180
            ITNN I+P SSPLLSYDSIRAAPF MPPF+QHKNGFVDS+VIEEPQVNDYLSFLNESSS
Sbjct: 121 GITNNVISPKSSPLLSYDSIRAAPFSMPPFMQHKNGFVDSEVIEEPQVNDYLSFLNESSS 180

Query: 181 SRGEDL------------NWTQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240
           SRGEDL            NWTQSMDNA+TPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF
Sbjct: 181 SRGEDLVDPRTELGRGLQNWTQSMDNADTPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240

Query: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKAAXXXXXXRLA 285
           ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLE LF+QREE MRYKAA      RLA
Sbjct: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLEGLFDQREEFMRYKAA---QQQRLA 300

[Close]
BLAST of Carg16926 vs. TAIR10
Match: AT5G12440.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain)

HSP 1 Score: 185.3 bits (469), Expect = 5.4e-47
Identity = 121/321 (37.69%), Postives = 179/321 (55.76%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           MD+ +AT+L+  KI++LEP+ A KI+G+LL+ D GD++L+ LA GP+++L S I K K+ 
Sbjct: 1   MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60

Query: 61  LG-FTFNSSSSTPSSPSPLNPIARP-----SNSITNNAIT-PNSSP-------------- 120
           LG F+ NS SSTP+SPSPLNPI RP      +S +N  +    +SP              
Sbjct: 61  LGIFSNNSPSSTPTSPSPLNPICRPPLNGRGSSHSNGFMDFRRNSPXXXXXXXXXXXXXX 120

Query: 121 ------LLSYDSIRAAPFPMPPFLQHKNGFV-----------DSDVIEEPQVNDYLSFLN 180
                    + S +  P   P      NG              +D++++ Q+ND LSFL+
Sbjct: 121 XXXXXXXXPHISPKHTPISKPFSSHQSNGLSATHSGSADAAGGADLLDDQQLNDCLSFLD 180

Query: 181 ESSSSRGEDLNWTQSMD-----NAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARG 240
           +S S   + ++ +  +D     + ET  HRRS+S  D  F S D GFG G KPC+YF+RG
Sbjct: 181 DSCSKTEDLVDPSIPLDYSVDGDGETHLHRRSFSC-DASFVSGDDGFGGGCKPCVYFSRG 240

Query: 241 FCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKAAXXXXXXRLATAS 279
            CKNG +CKF+HG + D++D +  +  SP K+E+   Q EE+MR K A      +   AS
Sbjct: 241 LCKNGESCKFIHGGYPDNMDGNGIVADSPRKMENFVRQHEEMMRLKLA----YQQQRLAS 300

[Close]
BLAST of Carg16926 vs. TAIR10
Match: AT3G21100.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 159.8 bits (403), Expect = 2.4e-39
Identity = 122/310 (39.35%), Postives = 168/310 (54.19%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           MD  + T++++ KI+ LEP+ ASKI+G+LL+QDLG  +L+RLA GP+TLL S+ LKAK+ 
Sbjct: 1   MDPGDPTSILFTKIRTLEPDFASKIIGYLLLQDLGKTDLMRLALGPETLLQSVCLKAKSA 60

Query: 61  LGFTFNSSSSTPSSPSPLNPIARPSNSITNNAITPNSSPLLSYDSIRAAP-FPMPPFLQH 120
           LG + N SS   S+ SPLNPI+RP N I  ++++ +SSP   +     +P F  P  L  
Sbjct: 61  LGLSSNGSS---SASSPLNPISRPIN-IHRHSLS-HSSPGNGFSRNPLSPSFATPGSLGS 120

Query: 121 KNGFV-----------------------DSDVIEEPQVNDYLSFLNESSSSRGEDL--NW 180
               +                           ++E Q+ +YLSFLNESSS   ++    +
Sbjct: 121 NPNMIXXXXXXXXXXXXXXXXXXXXXXXXXXFLDEQQLGNYLSFLNESSSKNNDESLDPF 180

Query: 181 TQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARGFCKNGSNCKFLHGDFSD 240
             S DN +   H+RS+SASD CFGSE+ GFG G              G N +FLHG   D
Sbjct: 181 GFSADNGDAHLHKRSFSASDACFGSEEPGFGGG--------------GYN-RFLHGGLGD 240

Query: 241 SVDPSAAIVGSPSKLESLFEQREELMRYKAAXXXXXXRLATASELMAGVSPSQYNKYINF 285
             D S    GSP   + +  Q+EE++R K A      R+A A  L A  SP  Y K +NF
Sbjct: 241 DFD-SPGGFGSP---DYVSRQQEEIVRMKMA---QRQRMAAAQYLAATGSPMSYEKGLNF 282

[Close]
BLAST of Carg16926 vs. TAIR10
Match: AT3G51950.1 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 126.3 bits (316), Expect = 3.0e-29
Identity = 103/290 (35.52%), Postives = 136/290 (46.90%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           MD YEAT +V ++I++L+PENASKIMG LL+QD G+KE+IRLAFGP+TL+HS+I+KAK  
Sbjct: 1   MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60

Query: 61  LGFTFNSSSSTPSSPSPLNPIARPSNSITNNAITPNSSPLLSYDSIRAAPFPMPPFLQHK 120
           LG   N S S  S    L     P N+   +++ P S P                   + 
Sbjct: 61  LGL-MNCSRSPWSHQDEL---ISPKNN-RGSSLNPASLPF------------------YA 120

Query: 121 NGFVDSDVIEEPQVNDYLSFLNESSSSRGEDLNWTQSMDNAETPFHRRSYSASDVC---- 180
           NG                     SS     D      M++  T F    ++ S  C    
Sbjct: 121 NG-------------------GRSSRDLTNDFELMDDMNSRSTDFLGSVHARSGSCVLDG 180

Query: 181 --FGSEDGGFGVGYKPCLYFARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFE 240
             +G  D   G G  PC YFARGFCKNG++C+F+H       D  A +VGSPS++     
Sbjct: 181 LGYGG-DSDLGFGGVPCSYFARGFCKNGASCRFVHS------DGGADLVGSPSRI----- 225

Query: 241 QREELMRYKAAXXXXXXRLATASELMAGVSPSQYNKYINFLLQQQNDTHR 285
              EL+R  +          T S L     PS   K +N    QQND  R
Sbjct: 241 ---ELLRSNSVPPRLAHHFMTRSSL-----PSFSTKGVNL---QQNDVQR 225

[Close]
BLAST of Carg16926 vs. TAIR10
Match: AT1G51520.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-16
Identity = 78/255 (30.59%), Postives = 120/255 (47.06%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           MD  + T+++++KI+  E ENAS+++ + L+QD+  ++LIR+AFGPD+L+ +   KAK  
Sbjct: 1   MDPGDPTSIIFSKIRTFELENASRVIDYFLLQDMEQRDLIRIAFGPDSLIQTFCQKAKVD 60

Query: 61  LGFTFNSSS-------STPSSPSPLNPIARPSNSITNNAITPNSSPLLSYDSIRAAPFPM 120
           LGF+ N  S        + SS SP N     S + +N    P SS  L+ +++R      
Sbjct: 61  LGFSSNGFSRPINIHGQSLSSSSPRNGFLEFSRNPSN----PLSSS-LTLNTLR------ 120

Query: 121 PPFLQHKNGFVDSDVIEEPQVNDYLSFLNESSSSRGEDLNWTQSMDNAETPF---HRRSY 180
                +K  F  S   E                       +T    N E PF   H+RS+
Sbjct: 121 ----DNKPNFNSSPFRESXXXXXXXXXXXXXXXXXXXXXLFT----NDEDPFANSHKRSF 180

Query: 181 SASDVCFGSEDGGFGVGYKPCLYFARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLE 240
           SA+D CF SE+  FG G   C  F +G   +G                S+ + GSPS+++
Sbjct: 181 SANDACFESEEPWFG-GGNGCHQFPQGGLVDGFG--------------SSGVFGSPSEMD 218

Query: 241 SLFEQREELMRYKAA 246
            +    E +MR K A
Sbjct: 241 YML---EGMMRMKLA 218

[Close]
BLAST of Carg16926 vs. TAIR10
Match: AT3G63450.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-16
Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 1  MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
          MD YEAT +V ++I+NL+P NASKI+G LL+QD G+KE+IRLAFGP  LLHS+I KAK  
Sbjct: 1  MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKD 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]
BLAST of Carg16926 vs. Swiss-Prot
Match: sp|Q94CJ8|C3H55_ARATH (Zinc finger CCCH domain-containing protein 55 OS=Arabidopsis thaliana OX=3702 GN=At5g12440 PE=2 SV=3)

HSP 1 Score: 185.3 bits (469), Expect = 9.8e-46
Identity = 121/321 (37.69%), Postives = 179/321 (55.76%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           MD+ +AT+L+  KI++LEP+ A KI+G+LL+ D GD++L+ LA GP+++L S I K K+ 
Sbjct: 1   MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60

Query: 61  LG-FTFNSSSSTPSSPSPLNPIARP-----SNSITNNAIT-PNSSP-------------- 120
           LG F+ NS SSTP+SPSPLNPI RP      +S +N  +    +SP              
Sbjct: 61  LGIFSNNSPSSTPTSPSPLNPICRPPLNGRGSSHSNGFMDFRRNSPXXXXXXXXXXXXXX 120

Query: 121 ------LLSYDSIRAAPFPMPPFLQHKNGFV-----------DSDVIEEPQVNDYLSFLN 180
                    + S +  P   P      NG              +D++++ Q+ND LSFL+
Sbjct: 121 XXXXXXXXPHISPKHTPISKPFSSHQSNGLSATHSGSADAAGGADLLDDQQLNDCLSFLD 180

Query: 181 ESSSSRGEDLNWTQSMD-----NAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYFARG 240
           +S S   + ++ +  +D     + ET  HRRS+S  D  F S D GFG G KPC+YF+RG
Sbjct: 181 DSCSKTEDLVDPSIPLDYSVDGDGETHLHRRSFSC-DASFVSGDDGFGGGCKPCVYFSRG 240

Query: 241 FCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKAAXXXXXXRLATAS 279
            CKNG +CKF+HG + D++D +  +  SP K+E+   Q EE+MR K A      +   AS
Sbjct: 241 LCKNGESCKFIHGGYPDNMDGNGIVADSPRKMENFVRQHEEMMRLKLA----YQQQRLAS 300

[Close]
BLAST of Carg16926 vs. Swiss-Prot
Match: sp|Q0D3J9|C3H53_ORYSJ (Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0682400 PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.0e-34
Identity = 103/285 (36.14%), Postives = 143/285 (50.18%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           MDAYEAT +V+++I+ L+P++A+KIMGFLLIQD G+KE+IRLAFGP+ LLH+++ KA+  
Sbjct: 1   MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60

Query: 61  LGFTFNSSSSTPSS-------------------------PSPLN----------PIARPS 120
           LG    S   TP+S                         PSPL+          P+   +
Sbjct: 61  LGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFSRN 120

Query: 121 NSITNNA---ITPNSSPLLSYDSIRAAPFPMPPFLQHKNGFVDSDVIEEPQVNDYLSFLN 180
           NSI+N A   +      L+S  +    P P          F    +++E Q+ D L+FLN
Sbjct: 121 NSISNGAGEEMVGLGDELISPANGGGPPSPF---------FGGDPLMDELQLQDQLAFLN 180

Query: 181 ESSSSRGE-----------------------DLNWTQSMDNAETPFHRRSYSASDVCFGS 221
           E     G                        +L W         P HRRS S S++C G 
Sbjct: 181 EGGVPAGHQMPMFDGGECRSPGGGDGGLFSYNLGWANG-----GPGHRRSASVSELCLGG 240

[Close]
BLAST of Carg16926 vs. Swiss-Prot
Match: sp|Q10M00|C3H22_ORYSJ (Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0328900 PE=2 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-28
Identity = 99/303 (32.67%), Postives = 147/303 (48.51%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           MDAYEAT +V+++I+ L+P++A+KIMG LLIQD GDKE+IRLAFGP+ LLHS++ +A+  
Sbjct: 1   MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60

Query: 61  LG------FTFNSSSSTPSSPSPL-----------------------------NPIARPS 120
           L                P++ SP                               P +R S
Sbjct: 61  LAXXXXXXXXXXXXXXXPAAHSPFLLSRQNSGXXXXXXXXXXXXXXXXXXXXXXPFSR-S 120

Query: 121 NSITNNAITPNSSPLLSYDSIRAAPFPMPPFLQHKNGFVDSDVIEEPQVNDYLSFLNESS 180
           N   +  +      +   +S   A    PPF   + G V   ++++ Q+ + L+FLNE  
Sbjct: 121 NGSVDEVVGAGEELISPANSGGGAAANAPPFFP-RGGDV---LLDDFQLQEQLAFLNEGG 180

Query: 181 SSRGEDLNWTQSMDNAET----------------------PFHRRSYSASDVCFGSEDGG 240
            +    L   Q  D AE                       P HRRS S +++C G     
Sbjct: 181 VNPSHPL---QGFDGAECRSPGPGEGGGMFPYGLGWANGGPGHRRSASVNELCLGGGSSD 240

Query: 241 FGVGYKPCLYFARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQ--REELMR 245
            G G+KPCLY+ARGFCKNGS+C+F+HG      D +AA+ G+     +  +Q  ++ L+R
Sbjct: 241 -GFGWKPCLYYARGFCKNGSSCRFVHG------DDAAALTGAAMDAATAEQQQCQDFLLR 288

[Close]
BLAST of Carg16926 vs. Swiss-Prot
Match: sp|Q9SV09|C3H46_ARATH (Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN=At3g51950 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.4e-28
Identity = 103/290 (35.52%), Postives = 136/290 (46.90%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           MD YEAT +V ++I++L+PENASKIMG LL+QD G+KE+IRLAFGP+TL+HS+I+KAK  
Sbjct: 1   MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60

Query: 61  LGFTFNSSSSTPSSPSPLNPIARPSNSITNNAITPNSSPLLSYDSIRAAPFPMPPFLQHK 120
           LG   N S S  S    L     P N+   +++ P S P                   + 
Sbjct: 61  LGL-MNCSRSPWSHQDEL---ISPKNN-RGSSLNPASLPF------------------YA 120

Query: 121 NGFVDSDVIEEPQVNDYLSFLNESSSSRGEDLNWTQSMDNAETPFHRRSYSASDVC---- 180
           NG                     SS     D      M++  T F    ++ S  C    
Sbjct: 121 NG-------------------GRSSRDLTNDFELMDDMNSRSTDFLGSVHARSGSCVLDG 180

Query: 181 --FGSEDGGFGVGYKPCLYFARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFE 240
             +G  D   G G  PC YFARGFCKNG++C+F+H       D  A +VGSPS++     
Sbjct: 181 LGYGG-DSDLGFGGVPCSYFARGFCKNGASCRFVHS------DGGADLVGSPSRI----- 225

Query: 241 QREELMRYKAAXXXXXXRLATASELMAGVSPSQYNKYINFLLQQQNDTHR 285
              EL+R  +          T S L     PS   K +N    QQND  R
Sbjct: 241 ---ELLRSNSVPPRLAHHFMTRSSL-----PSFSTKGVNL---QQNDVQR 225

[Close]
BLAST of Carg16926 vs. Swiss-Prot
Match: sp|Q10LZ9|C3H23_ORYSJ (Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0329200 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-27
Identity = 91/266 (34.21%), Postives = 135/266 (50.75%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAK-- 60
           MDAYEAT +V+++I+ L+P++A+KIMG LLIQD GDKE+IRLAFGP+ LLHS++ +A+  
Sbjct: 1   MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60

Query: 61  ------------------AHLGFTFNSSSS------TPSSPSPLNPIARPSNSITNNAIT 120
                             AH  F  +  +S      +PSS +   P +R SNS+ N    
Sbjct: 61  LALLPPPQAASSSPTVPAAHSPFLLSRQNSGRCPAPSPSSWAQAQPFSR-SNSMGNGGAA 120

Query: 121 PN----SSPLLSYDSIRAAPFPMPPFLQHKNGFVDSDVIEEPQVNDYLSFLNESSSSRGE 180
                    L+S  +              + G     ++++ ++ + L+FL++ +     
Sbjct: 121 DEMVGAGEELMSPLNXXXXXXXXXXXFFPRGG---DALLDDFELQEQLAFLHDGAGGVNP 180

Query: 181 DLNWTQSMDNAET----------------------PFHRRSYSASDVCFGSEDGGFGVGY 215
             +  Q+ D AE                       P HRRS S +++C     GG G G+
Sbjct: 181 G-HALQAFDGAECRSPGPGESGGMLPYGLAWANGGPGHRRSASVNELCL----GGDGFGW 240

[Close]
BLAST of Carg16926 vs. TrEMBL
Match: tr|A0A0A0M077|A0A0A0M077_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616250 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 1.2e-136
Identity = 262/330 (79.39%), Postives = 270/330 (81.82%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGP+TLLHSLILKAKAH
Sbjct: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60

Query: 61  LGFTFNSSSSTPSSPSPLNPIARPSNS--------------------------------- 120
           LGF  NSSSSTPSSPSPLNPIARPSNS                                 
Sbjct: 61  LGFPLNSSSSTPSSPSPLNPIARPSNSNPFSQSSPRIPNNGFDLTKNPSSPSTTGSWSLS 120

Query: 121 -ITNNAITPNSSPLLSYDSIRAAPFPMPPFLQHKNGFVDSDVIEEPQVNDYLSFLNESSS 180
            ITNN I+P SSPLLSYDSIRAAPF MPPF+QHKNGFVDS+VIEEPQVN+YLSFLNESSS
Sbjct: 121 GITNNVISPKSSPLLSYDSIRAAPFSMPPFMQHKNGFVDSEVIEEPQVNEYLSFLNESSS 180

Query: 181 SRGEDL------------NWTQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240
           SRGEDL            NWTQSMDNA+TPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF
Sbjct: 181 SRGEDLVDPRMELGRGLQNWTQSMDNADTPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240

Query: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKAAXXXXXXRLA 285
           ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLE LF+QREE MRYKAA      RLA
Sbjct: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLEGLFDQREEFMRYKAA---QQQRLA 300

[Close]
BLAST of Carg16926 vs. TrEMBL
Match: tr|A0A1S4DYU9|A0A1S4DYU9_CUCME (zinc finger CCCH domain-containing protein 46-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492010 PE=4 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 2.0e-136
Identity = 262/330 (79.39%), Postives = 269/330 (81.52%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGP+TLLHSLILKAKAH
Sbjct: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60

Query: 61  LGFTFNSSSSTPSSPSPLNPIARPSNS--------------------------------- 120
           LGF  NSSSSTPSSPSPLNPIARP NS                                 
Sbjct: 61  LGFPLNSSSSTPSSPSPLNPIARPLNSNPFSQSSPRIPNNGFDLTKNPSSPSTTSSWSLS 120

Query: 121 -ITNNAITPNSSPLLSYDSIRAAPFPMPPFLQHKNGFVDSDVIEEPQVNDYLSFLNESSS 180
            ITNN I+P SSPLLSYDSIRAAPF MPPF+QHKNGFVDS+VIEEPQVNDYLSFLNESSS
Sbjct: 121 GITNNVISPKSSPLLSYDSIRAAPFSMPPFMQHKNGFVDSEVIEEPQVNDYLSFLNESSS 180

Query: 181 SRGEDL------------NWTQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240
           SRGEDL            NWTQSMDNA+TPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF
Sbjct: 181 SRGEDLVDPRTELGRGLQNWTQSMDNADTPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240

Query: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKAAXXXXXXRLA 285
           ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLE LF+QREE MRYKAA      RLA
Sbjct: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLEGLFDQREEFMRYKAA---QQQRLA 300

[Close]
BLAST of Carg16926 vs. TrEMBL
Match: tr|A0A1S4DY42|A0A1S4DY42_CUCME (zinc finger CCCH domain-containing protein 46-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492010 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 2.6e-104
Identity = 222/330 (67.27%), Postives = 229/330 (69.39%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGP+TLLHSLILKAKAH
Sbjct: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPETLLHSLILKAKAH 60

Query: 61  LGFTFNSSSSTPSSPSPLNPIARPSNS--------------------------------- 120
           LGF  NSSSSTPSSPSPLNPIARP NS                                 
Sbjct: 61  LGFPLNSSSSTPSSPSPLNPIARPLNSNPFSQSSPRIPNNGFDLTKNPSSPSTTSSWSLS 120

Query: 121 -ITNNAITPNSSPLLSYDSIRAAPFPMPPFLQHKNGFVDSDVIEEPQVNDYLSFLNESSS 180
            ITNN I+P SSPLLSYDSIRAAPF MPPF+QHKNGFVDS+VIEEPQVNDYLSFLNESSS
Sbjct: 121 GITNNVISPKSSPLLSYDSIRAAPFSMPPFMQHKNGFVDSEVIEEPQVNDYLSFLNESSS 180

Query: 181 SRGEDL------------NWTQSMDNAETPFHRRSYSASDVCFGSEDGGFGVGYKPCLYF 240
           SRGEDL            NWTQSMDNA+TPFHRRSYSASDVCFGSEDGGFGVG       
Sbjct: 181 SRGEDLVDPRTELGRGLQNWTQSMDNADTPFHRRSYSASDVCFGSEDGGFGVG------- 240

Query: 241 ARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKAAXXXXXXRLA 285
                                            KLE LF+QREE MRYKAA      RLA
Sbjct: 241 ---------------------------------KLEGLFDQREEFMRYKAA---QQQRLA 287

[Close]
BLAST of Carg16926 vs. TrEMBL
Match: tr|A0A2P5CDF9|A0A2P5CDF9_PARAD (Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_162180 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.5e-80
Identity = 179/340 (52.65%), Postives = 224/340 (65.88%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           M +YEAT +++ K+KNL+PENA+KI+G++LIQDL +K+L+RLAFGPD+LLHSL+++AK H
Sbjct: 1   MASYEATNIIFTKVKNLDPENATKIIGYILIQDLAEKDLVRLAFGPDSLLHSLVIRAKIH 60

Query: 61  LGFTFNSS-------------------SSTPSSPSPL--------------NPIARPSNS 120
           LG   N+S                   S++ S+ +P               NP +  SNS
Sbjct: 61  LGLGSNTSXXXXXXXXXXXXXXXIARPSNSGSNSNPFSQSSPRIPNGFDFKNPSSPSSNS 120

Query: 121 -----ITNNAI-TPNSSPLLSYDSIRAAPFPMPPFLQHKNGFVDS----DVIEEPQVNDY 180
                 +NN I +P SSPLLSYD+IR   FP+P       G  D+    D+I+E Q+++Y
Sbjct: 121 WPLSGFSNNPISSPKSSPLLSYDNIRTGSFPVPVHHYKDGGGGDAATGGDLIDEHQLSEY 180

Query: 181 LSFLNESSS-SRGEDL------------NWTQSMDNAETPFHRRSYSASDVCFGSEDGGF 240
           LSFLNESSS  R EDL            +W  S+ N +  FHRRSYSAS+V FGSED G 
Sbjct: 181 LSFLNESSSFPRPEDLVDPRLELGRGVQDWGHSVSNGDAHFHRRSYSASEVSFGSEDSGL 240

Query: 241 GVGYKPCLYFARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKA 285
           G+GYKPCLYFARGFCKNGSNCKF+HG F D+VDPS AIVGSPSK +  FEQ EE+MR KA
Sbjct: 241 GIGYKPCLYFARGFCKNGSNCKFVHGGFGDAVDPSGAIVGSPSKFDG-FEQHEEMMRLKA 300

[Close]
BLAST of Carg16926 vs. TrEMBL
Match: tr|A0A2P5EUC6|A0A2P5EUC6_9ROSA (Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_149900 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.2e-78
Identity = 175/335 (52.24%), Postives = 218/335 (65.07%), Query Frame = 0 

Query: 1   MDAYEATTLVYAKIKNLEPENASKIMGFLLIQDLGDKELIRLAFGPDTLLHSLILKAKAH 60
           M +YEAT +++ K+KNL+PENA+KI+G++LIQDL +K+L+RLAFGPD+LLHSL+++AK H
Sbjct: 1   MASYEATNIIFTKVKNLDPENATKIIGYILIQDLAEKDLVRLAFGPDSLLHSLVIRAKIH 60

Query: 61  LGFTFNSS-------------------SSTPSSPSPL--------------NPIARPSNS 120
           LG   N+S                   S++ S+ +P               NP +  SNS
Sbjct: 61  LGLGSNTSXXXXXXXXXXXXXXXIARPSNSGSNSNPFSQSSPRIPNGFDFKNPSSPSSNS 120

Query: 121 -----ITNNAI-TPNSSPLLSYDSIRAAPFPMP----PFLQHKNGFVDSDVIEEPQVNDY 180
                 TNN I +P SSPLLSYD+IR   FP+P                D+I+E Q+++Y
Sbjct: 121 WPLSGFTNNPISSPKSSPLLSYDNIRTGSFPVPVHXXXXXXXXXXXXXGDLIDEHQLSEY 180

Query: 181 LSFLNESSS-SRGEDL------------NWTQSMDNAETPFHRRSYSASDVCFGSEDGGF 240
           LSFLNESSS  R EDL            +W  S+ N +  FHRRSYSAS+V FGSED G 
Sbjct: 181 LSFLNESSSFPRPEDLVDPRLELGRGVQDWGHSVSNGDAHFHRRSYSASEVSFGSEDSGL 240

Query: 241 GVGYKPCLYFARGFCKNGSNCKFLHGDFSDSVDPSAAIVGSPSKLESLFEQREELMRYKA 280
           G+GYKPCLYFARGFCKNGSNCKF+HG F D+VDPS AIVGSPSK +  FEQ EE+MR KA
Sbjct: 241 GIGYKPCLYFARGFCKNGSNCKFVHGGFGDAVDPSGAIVGSPSKFDG-FEQHEEMMRLKA 300

The following BLAST results are available for this feature:
BLAST of Carg16926 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023516508.11.6e-14585.76zinc finger CCCH domain-containing protein 46-like [Cucurbita pepo subsp. pepo][more]
XP_022961198.12.1e-14585.76zinc finger CCCH domain-containing protein 46-like [Cucurbita moschata][more]
XP_022988039.12.5e-14383.64zinc finger CCCH domain-containing protein 55-like [Cucurbita maxima][more]
XP_011660149.11.8e-13679.39PREDICTED: zinc finger CCCH domain-containing protein 46-like [Cucumis sativus] ... [more]
XP_016900900.13.0e-13679.39PREDICTED: zinc finger CCCH domain-containing protein 46-like isoform X1 [Cucumi... [more]
BLAST of Carg16926 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G12440.15.4e-4737.69CCCH-type zinc fingerfamily protein with RNA-binding domain[more]
AT3G21100.22.4e-3939.35RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G51950.13.0e-2935.52Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ... [more]
AT1G51520.21.3e-1630.59RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G63450.31.3e-1665.57RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Carg16926 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q94CJ8|C3H55_ARATH9.8e-4637.69Zinc finger CCCH domain-containing protein 55 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q0D3J9|C3H53_ORYSJ5.0e-3436.14Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX... [more]
sp|Q10M00|C3H22_ORYSJ1.9e-2832.67Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica OX... [more]
sp|Q9SV09|C3H46_ARATH5.4e-2835.52Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q10LZ9|C3H23_ORYSJ1.2e-2734.21Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa subsp. japonica OX... [more]
BLAST of Carg16926 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M077|A0A0A0M077_CUCSA1.2e-13679.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616250 PE=4 SV=1[more]
tr|A0A1S4DYU9|A0A1S4DYU9_CUCME2.0e-13679.39zinc finger CCCH domain-containing protein 46-like isoform X1 OS=Cucumis melo OX... [more]
tr|A0A1S4DY42|A0A1S4DY42_CUCME2.6e-10467.27zinc finger CCCH domain-containing protein 46-like isoform X2 OS=Cucumis melo OX... [more]
tr|A0A2P5CDF9|A0A2P5CDF9_PARAD3.5e-8052.65Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_1621... [more]
tr|A0A2P5EUC6|A0A2P5EUC6_9ROSA7.2e-7852.24Splicing factor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_149900 P... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036855Znf_CCCH_sf
IPR000571Znf_CCCH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16926-RACarg16926-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 232..252
NoneNo IPR availableGENE3DG3DSA:4.10.1000.10coord: 187..254
e-value: 3.1E-6
score: 29.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..93
NoneNo IPR availablePANTHERPTHR24009FAMILY NOT NAMEDcoord: 1..87
coord: 69..284
NoneNo IPR availablePANTHERPTHR24009:SF11SUBFAMILY NOT NAMEDcoord: 1..87
coord: 69..284
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 187..211
e-value: 6.8E-5
score: 32.3
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 188..210
e-value: 1.0E-6
score: 28.4
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 185..212
score: 14.277
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILYSSF90229CCCH zinc fingercoord: 188..210

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg16926Cla006321Watermelon (97103) v1carwmB0463
Carg16926Csa1G616250Cucumber (Chinese Long) v2carcuB0499
Carg16926MELO3C015164Melon (DHL92) v3.5.1carmeB0472
Carg16926ClCG03G013020Watermelon (Charleston Gray)carwcgB0454
Carg16926CSPI01G30580Wild cucumber (PI 183967)carcpiB0506
Carg16926Cucsa.333940Cucumber (Gy14) v1carcgyB0541
Carg16926CmaCh11G008610Cucurbita maxima (Rimu)carcmaB0650
Carg16926CmaCh10G009150Cucurbita maxima (Rimu)carcmaB0649
Carg16926CmoCh11G008710Cucurbita moschata (Rifu)carcmoB0633
Carg16926CmoCh10G009560Cucurbita moschata (Rifu)carcmoB0631
Carg16926Lsi06G005440Bottle gourd (USVL1VR-Ls)carlsiB424
Carg16926Cp4.1LG18g01800Cucurbita pepo (Zucchini)carcpeB0655
Carg16926Cp4.1LG04g12250Cucurbita pepo (Zucchini)carcpeB0656
Carg16926CsGy1G029910Cucumber (Gy14) v2carcgybB0475
Carg16926MELO3C015164.2Melon (DHL92) v3.6.1carmedB0475
Carg16926CsaV3_1G043040Cucumber (Chinese Long) v3carcucB0503
Carg16926Cla97C03G063230Watermelon (97103) v2carwmbB0490
Carg16926Bhi02G001291Wax gourdcarwgoB0568
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg16926Carg25437Silver-seed gourdcarcarB439
The following block(s) are covering this gene:
GeneOrganismBlock
Carg16926Silver-seed gourdcarcarB463
Carg16926Cucurbita maxima (Rimu)carcmaB0652
Carg16926Cucurbita moschata (Rifu)carcmoB0634
Carg16926Cucurbita pepo (Zucchini)carcpeB0654
Carg16926Bottle gourd (USVL1VR-Ls)carlsiB422
Carg16926Melon (DHL92) v3.5.1carmeB0474
Carg16926Melon (DHL92) v3.6.1carmedB0478
Carg16926Watermelon (Charleston Gray)carwcgB0453
Carg16926Watermelon (97103) v1carwmB0465
Carg16926Watermelon (97103) v2carwmbB0489
Carg16926Wax gourdcarwgoB0566