Carg25420 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25420
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein
Location	Cucurbita_argyrosperma_scaffold_300 : 25041 .. 28637 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCATCGACTTCCTCTCCCGAAACCTACTTTCAGAACCAGAATTATCGCCTCAACTGTCACATATGCAACGCCTTTACTTCGTTCTAATTCCATCTCTTTCACATTTCACTTGTTCTATTCGCTCCCCAAATTTCATTCTATTCATGATGAAGCTGCAGGATCTTCTAATCACGGTCCTGTTTCTTCTTCAGTTTCTGCCTCGAATTCGTTTCTAGTGGAAAAGATTTTGTTCAGCTTGAAGCAAAATAATGTAAGTTCTTTGTCCAATTCTCTTTTCCGCCTGAATCCCTCAGCGTTAGTTGAAGTTCTGTATGGATGTCGCGAAAATTTACATTTGGGATTAAAATTTATTGATTTAGTTTCTTCTAGTTGCCCGAATTTGAAGCACTCGTCAATTTCTTTGAGTGCAATGGTTCATTTCTTAGTGCGCGGCAGGAGGCTCTCAGAAGCCCAAGCTTGCATTCTTAGGATGGTGAGGAAGAGTGGCGTCTCACGAGTTGAGGTCGTTCAATCTTTAGTTTCAACGTGTGGTAATTTTGGGTCGATTGGTTTGGTTTCTGATTTGTTAGTAAGGACTTATGTGCAAGCTAGAAAGTTAAGGGAAGGATCTGAAGCATTTCGAATTTTGAGGAGCAAAGGAGTTTCTGTATCTATAAATGCTTGTAACAGTCTCCTTGGTGGTCTTGTGAAGATTGGCTGGGTGGATTTAGCTTGGGAAATATTTGGGGAAGTTGTGAGAGGGGGCACTGAGTTGAATGTTTATACACTGAACATAATGGTCAATGCTCTGTGTAAAGATGGCAGAATTGCAAATGTGAATTTGTTCTTATCAGATATGGAAAAGAAAGGAGTTTTTCCTGACATTGTGACATATAATACTCTAATTAGTGCTTACTGTCGTGAAGGGCTTGTTGAAGAAGCCTTTGAACTGTTGAATTCAATCTCTAGTAAGGGTATGGAACCGGGCCTTCTAACTTATAATGCTATCATAAATGGCCTATGTAAGATAGGTAAGTATAACAGGGCAAAGGACGTTTTGAATAAGATGTCGCAACTTGGGTTAAAGCCTGATGCCGCTACATATAACACATTGCTGGTTGAGATTTGTCGACGAGATAATATTTCAGAAGCTGAAGAGATATTTGATGAAATGTCACGTCATGGTGTTCTCCCTGATTTGATTAGTTTTAGTTCTCTGATTAGTGTGCTTGCTAGGAATGGGGATCTTGATTTGGCTCTTACGTATTTTAGAAATATGAAAAGTATTGGTCTCGTGCCTGATAATGTAATTTATACTATTCTTATTGATGGGTTTTGTCGAAACGGTGCGATTTCGGATGCTTTGAAAATGCGGGATGAGATGCTTGCTCAGGGTTGTGTTGTGGATGTGGTTGCATATAATACTATTTTGAATGGGTTATGTAAGAAGAAGATGCTTGTTGATGCAGATATGCTATTCAATGAAATGGTTGAAAGGGGTGTGTTTCCGGACTTTTATACTTTCACCACGCTCATTCATGGATATTGCAAAGATGGAAATATGGATCGAGCACTGAATTTGTTCGGAAGAATGGTTCGCACAAACCTCAAGCCAGACATCGTGACATACAACACGTTGATTGATGGCTTTTGCAAAGTAGGTGATATGAAAAAGGCCAAGGACTTGTGGGATGATATGATCAGGAAAGATATTGTCCCTAACCACGTTTCCTACGGAACTGTAATAAATGGTTTTTGTAGTTCAGGCTATTTATCCGAGGCATTGCATCTGTGTGACCAGATGGTTGAACGGGGTATCAAACCGAACCTTGTCACTTACAATACTTTAATCAAAGGCTACTGCCGGTCTGCTGATATGCTGAAGGCCCATGAATGCTTGAGCAAAATGATATCAAATGGAATAATTCCCGATCGCATCTCATATAACACCCTCATCGATGGATATTTAAAAGACGAGAACCTAGGAAAAGCTTTTGTTATGATTAATGAGATGGAAAAGCAAAGGCTCAAACTTGATGTTATTACCTATAATTTGATTTTGAACGGATACTGTGCAAAAGGAAGAATGCTAGAGGCTGAGCAGGTGTTAAGGAAAATGATTGAGAATGGTGTAAATCCTGACAGAGCCACTTATTCTTCTCTGATAAATGGTCACGTCAGCCAAGACAATATGAAGGATGCATTTCGTTTCCACGACGAAATGCTACAAAGAGGACTTGTGCCTGATGATAGATTTTAGTTTTGGATTTCATTGGATGCACATCAGAATATACAATTAAGGTAGAGCTCTCTTTTCTATCTCGTGTGTGCATGTAGATGTACTCGTGTATGCCACTGCATTCATCTGTCAATCAGATCGGTTTGGTTGGTTAGATTTTCTAATTGCTTATTATGAGAGTGCCATTTTCGTACTCGTACTGAATATATTCATCATTCTAGCTCGGTTCAATGTTTACAGAACCAACTTAATCTTTCATGCAGGGATACTTCATATCTGATCCAAAACTCGGTGCCGATGCTTTTACATTGATGTTGTCTCTTCAATTACTGAGAATTGAGGCATTGATGTTGTCTCTTCAATTACTGAGAATTGAAGTTCTGATCCTCTCAGGTTATGAATCATCTTTACTTGTTACTTTTCTCCGTCTCTCTTTCTCTGTTTCTTCCTTTTTTATAAGAAATGCCTCATAGATGAAATGAAATTCAATAATGGTGAGTAAATCCAGGCCCCAAGTTAATGGAGATTATTAACAATAATTGTTGAAAAGAGAGACAAATTTACACTGCAAAAGGAGTACAAAAGAAAAATAACTGAAGGATTTTCTTGTTGAAAAACCTGTAGTTCTTCCCAAGCCAAAGATTAGCAGGAAAAGGAAAAAAAGAAGAGCTTGCAATTGTCATCGATAGGAGTCTTGATGTGCTTGGAGAGGGCTATGTGTCCATTGAAGGTGGATAAGATAAACTTTTAGGAGTTACCAGCAAAAGAACAGTAGATGAAGACGTGACTTCGAGTTTCCATGCTCTTTTTGCGAAGAGGACGCCATTCCGGGAATGGGGAGCCATGGGGTCGCTTTTGCATCTTGTCCTAATTGTTTAAGCTTGTGTGGCTGAGTTCCTATTTCCTAGAAGAAGAGCTTGATTTCTTTGGGTTATTTACCTGAACTGGTGTGGCAGAGTTGAGTGGATTATTGCAAAGAGATCGAATTGTAAAGGAGCCATTTGATACTGTCAGCCAAAACCATATTGTTGCTGTATTTAGGGATGAAGTGTAGAGAGCAAACGAGATAGAAGTTAATCCAACTTTCCCCAAAGAGTACCTTTTCCCTTAGTTTTACTTCACCATTGAAGTTATCTTTCTTGTAGATCTTGTGGGCTACTTGTCAGCTGCCAACCAGAATATAGTATAGCCCACATTTCACTTTTGTTGTCATAAGGAGAAACCAGTCAACTTGTTGCTTCGCCATGCCCGATTAGGCGAAAAACCCGGAAAAAGGAAAAGTTAAGCGAAAAGAAGGCATGGCTGCACAATTACTTGGCCACTCAGAGAAAGGGCGCACCACATTTCTATTCCCAGTCAAAAGCTCAATGA

mRNA sequence

ATGGCTGCTCATCGACTTCCTCTCCCGAAACCTACTTTCAGAACCAGAATTATCGCCTCAACTGTCACATATGCAACGCCTTTACTTCGTTCTAATTCCATCTCTTTCACATTTCACTTGTTCTATTCGCTCCCCAAATTTCATTCTATTCATGATGAAGCTGCAGGATCTTCTAATCACGGTCCTGTTTCTTCTTCAGTTTCTGCCTCGAATTCGTTTCTAGTGGAAAAGATTTTGTTCAGCTTGAAGCAAAATAATGTAAGTTCTTTGTCCAATTCTCTTTTCCGCCTGAATCCCTCAGCGTTAGTTGAAGTTCTGTATGGATGTCGCGAAAATTTACATTTGGGATTAAAATTTATTGATTTAGTTTCTTCTAGTTGCCCGAATTTGAAGCACTCGTCAATTTCTTTGAGTGCAATGGTTCATTTCTTAGTGCGCGGCAGGAGGCTCTCAGAAGCCCAAGCTTGCATTCTTAGGATGGTGAGGAAGAGTGGCGTCTCACGAGTTGAGGTCGTTCAATCTTTAGTTTCAACGTGTGGTAATTTTGGGTCGATTGGTTTGGTTTCTGATTTGTTAGTAAGGACTTATGTGCAAGCTAGAAAGTTAAGGGAAGGATCTGAAGCATTTCGAATTTTGAGGAGCAAAGGAGTTTCTGTATCTATAAATGCTTGTAACAGTCTCCTTGGTGGTCTTGTGAAGATTGGCTGGGTGGATTTAGCTTGGGAAATATTTGGGGAAGTTGTGAGAGGGGGCACTGAGTTGAATGTTTATACACTGAACATAATGGTCAATGCTCTGTGTAAAGATGGCAGAATTGCAAATGTGAATTTGTTCTTATCAGATATGGAAAAGAAAGGAGTTTTTCCTGACATTGTGACATATAATACTCTAATTAGTGCTTACTGTCGTGAAGGGCTTGTTGAAGAAGCCTTTGAACTGTTGAATTCAATCTCTAGTAAGGGTATGGAACCGGGCCTTCTAACTTATAATGCTATCATAAATGGCCTATGTAAGATAGGTAAGTATAACAGGGCAAAGGACGTTTTGAATAAGATGTCGCAACTTGGGTTAAAGCCTGATGCCGCTACATATAACACATTGCTGGTTGAGATTTGTCGACGAGATAATATTTCAGAAGCTGAAGAGATATTTGATGAAATGTCACGTCATGGTGTTCTCCCTGATTTGATTAGTTTTAGTTCTCTGATTAGTGTGCTTGCTAGGAATGGGGATCTTGATTTGGCTCTTACGTATTTTAGAAATATGAAAAGTATTGGTCTCGTGCCTGATAATGTAATTTATACTATTCTTATTGATGGGTTTTGTCGAAACGGTGCGATTTCGGATGCTTTGAAAATGCGGGATGAGATGCTTGCTCAGGGTTGTGTTGTGGATGTGGTTGCATATAATACTATTTTGAATGGGTTATGTAAGAAGAAGATGCTTGTTGATGCAGATATGCTATTCAATGAAATGGTTGAAAGGGGTGTGTTTCCGGACTTTTATACTTTCACCACGCTCATTCATGGATATTGCAAAGATGGAAATATGGATCGAGCACTGAATTTGTTCGGAAGAATGGTTCGCACAAACCTCAAGCCAGACATCGTGACATACAACACGTTGATTGATGGCTTTTGCAAAGTAGGTGATATGAAAAAGGCCAAGGACTTGTGGGATGATATGATCAGGAAAGATATTGTCCCTAACCACGTTTCCTACGGAACTGTAATAAATGGTTTTTGTAGTTCAGGCTATTTATCCGAGGCATTGCATCTGTGTGACCAGATGGTTGAACGGGGTATCAAACCGAACCTTGTCACTTACAATACTTTAATCAAAGGCTACTGCCGGTCTGCTGATATGCTGAAGGCCCATGAATGCTTGAGCAAAATGATATCAAATGGAATAATTCCCGATCGCATCTCATATAACACCCTCATCGATGGATATTTAAAAGACGAGAACCTAGGAAAAGCTTTTGTTATGATTAATGAGATGGAAAAGCAAAGGCTCAAACTTGATGTTATTACCTATAATTTGATTTTGAACGGATACTGTGCAAAAGGAAGAATGCTAGAGGCTGAGCAGGTGTTAAGGAAAATGATTGAGAATGGTGTAAATCCTGACAGAGCCACTTATTCTTCTCTGATAAATGGTCACGTCAGCCAAGACAATATGAAGGATGCATTTCGTTTCCACGACGAAATGCTACAAAGAGGACTTGGATACTTCATATCTGATCCAAAACTCGGTGCCGATGCTTTTACATTGATGTTGTCTCTTCAATTACTGAGAATTGAGGCATTGATGTTGTCTCTTCAATTACTGAGAATTGAATTCTTCCCAAGCCAAAGATTAGCAGGAAAAGGAAAAAAAGAAGAGCTTGCAATTGTCATCGATAGGAGTCTTGATGTGCTTGGAGAGGGCTATGTGTCCATTGAAGGAGAAACCAGTCAACTTGTTGCTTCGCCATGCCCGATTAGGCGAAAAACCCGGAAAAAGGAAAAGTTAAGCGAAAAGAAGGCATGGCTGCACAATTACTTGGCCACTCAGAGAAAGGGCGCACCACATTTCTATTCCCAGTCAAAAGCTCAATGA

Coding sequence (CDS)

ATGGCTGCTCATCGACTTCCTCTCCCGAAACCTACTTTCAGAACCAGAATTATCGCCTCAACTGTCACATATGCAACGCCTTTACTTCGTTCTAATTCCATCTCTTTCACATTTCACTTGTTCTATTCGCTCCCCAAATTTCATTCTATTCATGATGAAGCTGCAGGATCTTCTAATCACGGTCCTGTTTCTTCTTCAGTTTCTGCCTCGAATTCGTTTCTAGTGGAAAAGATTTTGTTCAGCTTGAAGCAAAATAATGTAAGTTCTTTGTCCAATTCTCTTTTCCGCCTGAATCCCTCAGCGTTAGTTGAAGTTCTGTATGGATGTCGCGAAAATTTACATTTGGGATTAAAATTTATTGATTTAGTTTCTTCTAGTTGCCCGAATTTGAAGCACTCGTCAATTTCTTTGAGTGCAATGGTTCATTTCTTAGTGCGCGGCAGGAGGCTCTCAGAAGCCCAAGCTTGCATTCTTAGGATGGTGAGGAAGAGTGGCGTCTCACGAGTTGAGGTCGTTCAATCTTTAGTTTCAACGTGTGGTAATTTTGGGTCGATTGGTTTGGTTTCTGATTTGTTAGTAAGGACTTATGTGCAAGCTAGAAAGTTAAGGGAAGGATCTGAAGCATTTCGAATTTTGAGGAGCAAAGGAGTTTCTGTATCTATAAATGCTTGTAACAGTCTCCTTGGTGGTCTTGTGAAGATTGGCTGGGTGGATTTAGCTTGGGAAATATTTGGGGAAGTTGTGAGAGGGGGCACTGAGTTGAATGTTTATACACTGAACATAATGGTCAATGCTCTGTGTAAAGATGGCAGAATTGCAAATGTGAATTTGTTCTTATCAGATATGGAAAAGAAAGGAGTTTTTCCTGACATTGTGACATATAATACTCTAATTAGTGCTTACTGTCGTGAAGGGCTTGTTGAAGAAGCCTTTGAACTGTTGAATTCAATCTCTAGTAAGGGTATGGAACCGGGCCTTCTAACTTATAATGCTATCATAAATGGCCTATGTAAGATAGGTAAGTATAACAGGGCAAAGGACGTTTTGAATAAGATGTCGCAACTTGGGTTAAAGCCTGATGCCGCTACATATAACACATTGCTGGTTGAGATTTGTCGACGAGATAATATTTCAGAAGCTGAAGAGATATTTGATGAAATGTCACGTCATGGTGTTCTCCCTGATTTGATTAGTTTTAGTTCTCTGATTAGTGTGCTTGCTAGGAATGGGGATCTTGATTTGGCTCTTACGTATTTTAGAAATATGAAAAGTATTGGTCTCGTGCCTGATAATGTAATTTATACTATTCTTATTGATGGGTTTTGTCGAAACGGTGCGATTTCGGATGCTTTGAAAATGCGGGATGAGATGCTTGCTCAGGGTTGTGTTGTGGATGTGGTTGCATATAATACTATTTTGAATGGGTTATGTAAGAAGAAGATGCTTGTTGATGCAGATATGCTATTCAATGAAATGGTTGAAAGGGGTGTGTTTCCGGACTTTTATACTTTCACCACGCTCATTCATGGATATTGCAAAGATGGAAATATGGATCGAGCACTGAATTTGTTCGGAAGAATGGTTCGCACAAACCTCAAGCCAGACATCGTGACATACAACACGTTGATTGATGGCTTTTGCAAAGTAGGTGATATGAAAAAGGCCAAGGACTTGTGGGATGATATGATCAGGAAAGATATTGTCCCTAACCACGTTTCCTACGGAACTGTAATAAATGGTTTTTGTAGTTCAGGCTATTTATCCGAGGCATTGCATCTGTGTGACCAGATGGTTGAACGGGGTATCAAACCGAACCTTGTCACTTACAATACTTTAATCAAAGGCTACTGCCGGTCTGCTGATATGCTGAAGGCCCATGAATGCTTGAGCAAAATGATATCAAATGGAATAATTCCCGATCGCATCTCATATAACACCCTCATCGATGGATATTTAAAAGACGAGAACCTAGGAAAAGCTTTTGTTATGATTAATGAGATGGAAAAGCAAAGGCTCAAACTTGATGTTATTACCTATAATTTGATTTTGAACGGATACTGTGCAAAAGGAAGAATGCTAGAGGCTGAGCAGGTGTTAAGGAAAATGATTGAGAATGGTGTAAATCCTGACAGAGCCACTTATTCTTCTCTGATAAATGGTCACGTCAGCCAAGACAATATGAAGGATGCATTTCGTTTCCACGACGAAATGCTACAAAGAGGACTTGGATACTTCATATCTGATCCAAAACTCGGTGCCGATGCTTTTACATTGATGTTGTCTCTTCAATTACTGAGAATTGAGGCATTGATGTTGTCTCTTCAATTACTGAGAATTGAATTCTTCCCAAGCCAAAGATTAGCAGGAAAAGGAAAAAAAGAAGAGCTTGCAATTGTCATCGATAGGAGTCTTGATGTGCTTGGAGAGGGCTATGTGTCCATTGAAGGAGAAACCAGTCAACTTGTTGCTTCGCCATGCCCGATTAGGCGAAAAACCCGGAAAAAGGAAAAGTTAAGCGAAAAGAAGGCATGGCTGCACAATTACTTGGCCACTCAGAGAAAGGGCGCACCACATTTCTATTCCCAGTCAAAAGCTCAATGA

Protein sequence

MAAHRLPLPKPTFRTRIIASTVTYATPLLRSNSISFTFHLFYSLPKFHSIHDEAAGSSNHGPVSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLKFIDLVSSSCPNLKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVEVVQSLVSTCGNFGSIGLVSDLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVDLAWEIFGEVVRGGTELNVYTLNIMVNALCKDGRIANVNLFLSDMEKKGVFPDIVTYNTLISAYCREGLVEEAFELLNSISSKGMEPGLLTYNAIINGLCKIGKYNRAKDVLNKMSQLGLKPDAATYNTLLVEICRRDNISEAEEIFDEMSRHGVLPDLISFSSLISVLARNGDLDLALTYFRNMKSIGLVPDNVIYTILIDGFCRNGAISDALKMRDEMLAQGCVVDVVAYNTILNGLCKKKMLVDADMLFNEMVERGVFPDFYTFTTLIHGYCKDGNMDRALNLFGRMVRTNLKPDIVTYNTLIDGFCKVGDMKKAKDLWDDMIRKDIVPNHVSYGTVINGFCSSGYLSEALHLCDQMVERGIKPNLVTYNTLIKGYCRSADMLKAHECLSKMISNGIIPDRISYNTLIDGYLKDENLGKAFVMINEMEKQRLKLDVITYNLILNGYCAKGRMLEAEQVLRKMIENGVNPDRATYSSLINGHVSQDNMKDAFRFHDEMLQRGLGYFISDPKLGADAFTLMLSLQLLRIEALMLSLQLLRIEFFPSQRLAGKGKKEELAIVIDRSLDVLGEGYVSIEGETSQLVASPCPIRRKTRKKEKLSEKKAWLHNYLATQRKGAPHFYSQSKAQ

Homology

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BLAST of Carg25420 vs. NCBI nr
Match: XP_022933790.1 (pentatricopeptide repeat-containing protein At5g01110 [Cucurbita moschata])

HSP 1 Score: 476.9 bits (1226), Expect = 1.5e-130
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MAAHRLPLPKPTFRTRIIASTVTYATPLLRSNSISFTFHLFYSLPKFHSIHDEAAGSSNH 60
           MAAHRLPLPKPTFRTRIIASTVTYATPLLRSNSISFTFHLFYSLPKFHSIHDEAAGSSNH
Sbjct: 8   MAAHRLPLPKPTFRTRIIASTVTYATPLLRSNSISFTFHLFYSLPKFHSIHDEAAGSSNH 67

Query: 61  GPVSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLKFI 120
           GPVSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLKFI
Sbjct: 68  GPVSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLKFI 127

Query: 121 DLVSSSCPNLKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVEVVQSLVSTCG 180
           DLVSSSCPNLKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVEVVQSLVSTCG
Sbjct: 128 DLVSSSCPNLKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVEVVQSLVSTCG 187

Query: 181 NFGSIGLVSDLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVDLA 240
           NFGSIGLVSDLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVDLA
Sbjct: 188 NFGSIGLVSDLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVDLA 247

Query: 241 WEIFGEVVRG 251
           WEIFGEVVRG
Sbjct: 248 WEIFGEVVRG 257

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BLAST of Carg25420 vs. NCBI nr
Match: XP_023530884.1 (pentatricopeptide repeat-containing protein At5g01110 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 462.2 bits (1188), Expect = 3.8e-126
Identity = 240/250 (96.00%), Postives = 245/250 (98.00%), Query Frame = 0


Query: 1   MAAHRLPLPKPTFRTRIIASTVTYATPLLRSNSISFTFHLFYSLPKFHSIHDEAAGSSNH 60
           MAAHRLPLPKPTFRTRI+A T TYATPLLR+N ISFTFHLFYSLPKFHSIHDEAAGSSNH
Sbjct: 8   MAAHRLPLPKPTFRTRILAPTFTYATPLLRANFISFTFHLFYSLPKFHSIHDEAAGSSNH 67

Query: 61  GPVSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLKFI 120
            PVSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLKFI
Sbjct: 68  DPVSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLKFI 127

Query: 121 DLVSSSCPNLKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVEVVQSLVSTCG 180
           DL+SSSCPNLKHSSISLSAMVHFLVRGRRLSEAQ CILRMVRKSGVSRVEVV+S+VSTCG
Sbjct: 128 DLISSSCPNLKHSSISLSAMVHFLVRGRRLSEAQVCILRMVRKSGVSRVEVVESIVSTCG 187

Query: 181 NFGSIGLVSDLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVDLA 240
           NFGSIGLVSDLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVDLA
Sbjct: 188 NFGSIGLVSDLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVDLA 247

Query: 241 WEIFGEVVRG 251
           WEIFGEVVRG
Sbjct: 248 WEIFGEVVRG 257

[Close]

BLAST of Carg25420 vs. NCBI nr
Match: XP_022973817.1 (pentatricopeptide repeat-containing protein At5g01110 [Cucurbita maxima] >XP_022973822.1 pentatricopeptide repeat-containing protein At5g01110 [Cucurbita maxima])

HSP 1 Score: 461.5 bits (1186), Expect = 6.5e-126
Identity = 240/249 (96.39%), Postives = 246/249 (98.80%), Query Frame = 0


Query: 1   MAAHRLPLPKPTFRTRIIASTVTYATPLLRSNSISFTFHLFYSLPKFHSIHDEAAGSSNH 60
           MAAHRLPLPKPTFRTRI+AST TYATPLLR+NSISFTFHL YSLPKFHSIHDEA+GSSNH
Sbjct: 9   MAAHRLPLPKPTFRTRILASTFTYATPLLRANSISFTFHLIYSLPKFHSIHDEASGSSNH 68

Query: 61  GPVSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLKFI 120
            PVSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLKFI
Sbjct: 69  DPVSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLKFI 128

Query: 121 DLVSSSCPNLKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVEVVQSLVSTCG 180
           DLVSSSCPNLKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVEVV+S+VSTCG
Sbjct: 129 DLVSSSCPNLKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVEVVESIVSTCG 188

Query: 181 NFGSIGLVSDLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVDLA 240
           NFGSIGLVSDLLVRTYVQARKLREGSEAFRIL+SKGVSVSINACNSLLGGLVKIGWVDLA
Sbjct: 189 NFGSIGLVSDLLVRTYVQARKLREGSEAFRILKSKGVSVSINACNSLLGGLVKIGWVDLA 248

Query: 241 WEIFGEVVR 250
           WEIFGEVVR
Sbjct: 249 WEIFGEVVR 257

[Close]

BLAST of Carg25420 vs. NCBI nr
Match: XP_008450352.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g01110 [Cucumis melo] >XP_008450353.1 PREDICTED: pentatricopeptide repeat-containing protein At5g01110 [Cucumis melo] >XP_008450354.1 PREDICTED: pentatricopeptide repeat-containing protein At5g01110 [Cucumis melo] >XP_008450355.1 PREDICTED: pentatricopeptide repeat-containing protein At5g01110 [Cucumis melo])

HSP 1 Score: 328.2 bits (840), Expect = 8.6e-86
Identity = 179/250 (71.60%), Postives = 204/250 (81.60%), Query Frame = 0


Query: 1   MAAHRLPLPKPTFRTRIIASTVTYATPLLRSNSISFTFHLFYSLPK--FHSIHDEAAGSS 60
           MA HRLPLPK TFR+ I++S  T +TPLL +N  SF  H  YS        +  ++    
Sbjct: 1   MAVHRLPLPKSTFRSGILSSKFTSSTPLLPTNFNSFKLHTIYSPSNTALRFLQTQSTPGP 60

Query: 61  NHGPVSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLK 120
            + PVSSSVS S+SFL+EKILFSLKQNNVS L +SL RL+PS L++VL+ CRE+LHLGLK
Sbjct: 61  LYDPVSSSVSPSDSFLLEKILFSLKQNNVSYLRDSLLRLSPSLLLQVLFRCREDLHLGLK 120

Query: 121 FIDLVSSSCPNLKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVEVVQSLVST 180
           FI LVS   PN KHSS+SLSAMVHFLVRGRRLSEAQACILRMVRK GVSRV+VV+SL+ST
Sbjct: 121 FIGLVSYYFPNFKHSSLSLSAMVHFLVRGRRLSEAQACILRMVRKRGVSRVKVVESLIST 180

Query: 181 CGNFGSIGLVSDLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVD 240
           C NFGSIGLV DLLVRTYVQA+KLREGSEAF+ILR KGVSVSINACN LLGGLV+ GWVD
Sbjct: 181 CFNFGSIGLVYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVD 240

Query: 241 LAWEIFGEVV 249
           LAWEI+GEVV
Sbjct: 241 LAWEIYGEVV 250

[Close]

BLAST of Carg25420 vs. NCBI nr
Match: XP_022153215.1 (pentatricopeptide repeat-containing protein At5g01110 [Momordica charantia] >XP_022153216.1 pentatricopeptide repeat-containing protein At5g01110 [Momordica charantia] >XP_022153217.1 pentatricopeptide repeat-containing protein At5g01110 [Momordica charantia] >XP_022153219.1 pentatricopeptide repeat-containing protein At5g01110 [Momordica charantia] >XP_022153220.1 pentatricopeptide repeat-containing protein At5g01110 [Momordica charantia] >XP_022153221.1 pentatricopeptide repeat-containing protein At5g01110 [Momordica charantia])

HSP 1 Score: 328.2 bits (840), Expect = 8.6e-86
Identity = 186/252 (73.81%), Postives = 202/252 (80.16%), Query Frame = 0


Query: 1   MAAHRLPLPKPTFRTRIIASTVTYATPLLRSNSI--SFTFHLFYSLPKFHSIHDEAAGSS 60
           MAA+RLP    TFR R +A T T   PLLR  +   S   H  +SL K H+      G S
Sbjct: 6   MAANRLPHLNFTFRARTLALTFTDVEPLLRVRAYFNSLRLHSIFSLSKLHT----DPGPS 65

Query: 61  NHGPVSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLK 120
           +H PVSS    SNSFLVEKILF LKQNNVSSLS SLF LN S LVEVL+ CREN+ LG++
Sbjct: 66  DHQPVSS----SNSFLVEKILFGLKQNNVSSLSTSLFHLNASQLVEVLFSCRENVQLGIR 125

Query: 121 FIDLVSSSCPNLKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVEVVQSLVST 180
           FI LVSS+CPN KHSS+SLS M+HFLVRG RLSEAQA ILRMVRKSGVSRVEVV+SLVST
Sbjct: 126 FIGLVSSNCPNFKHSSLSLSVMIHFLVRGGRLSEAQALILRMVRKSGVSRVEVVESLVST 185

Query: 181 CGNFGSIGLVSDLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVD 240
           C +FGSI LV DLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVD
Sbjct: 186 CNSFGSIPLVFDLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVD 245

Query: 241 LAWEIFGEVVRG 251
           LAWEI+GEVVRG
Sbjct: 246 LAWEIYGEVVRG 249

[Close]

BLAST of Carg25420 vs. TAIR10
Match: AT5G01110.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 214.9 bits (546), Expect = 1.9e-55
Identity = 111/175 (63.43%), Postives = 140/175 (80.00%), Query Frame = 0


Query: 70  SNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLKFIDLVSSSCPN 129
           S+SFLVEKI FSLKQ N +++ N L RLNP A+VEVLY CR +L LG +F+D +    PN
Sbjct: 50  SDSFLVEKICFSLKQGN-NNVRNHLIRLNPLAVVEVLYRCRNDLTLGQRFVDQLGFHFPN 109

Query: 130 LKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVEVVQSLVSTCGNFGSIGLVS 189
            KH+S+SLSAM+H LVR  RLS+AQ+C+LRM+R+SGVSR+E+V SL ST  N GS   V 
Sbjct: 110 FKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVF 169

Query: 190 DLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVDLAWEIF 245
           DLL+RTYVQARKLRE  EAF +LRSKG +VSI+ACN+L+G LV+IGWV+LAW ++
Sbjct: 170 DLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVY 223

[Close]

BLAST of Carg25420 vs. TAIR10
Match: AT2G15980.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 3.9e-08
Identity = 50/195 (25.64%), Postives = 89/195 (45.64%), Query Frame = 0


Query: 63  VSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALV-----EVLYGCRENLHLGL 122
           VSS  S  +  L+   +  L  +   S  ++L  L PS        E+    R N HL L
Sbjct: 30  VSSPPSXXSDPLISDAVSILTHHRSKSRWSTLRSLQPSGFTPSQFSEITLCLRNNPHLSL 89

Query: 123 KFIDLVSSSCPNLKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSR-----VEVV 182
           +F  L +       H + S S ++H L R R  S A   I   +R +         ++V 
Sbjct: 90  RFF-LFTRRYSLCSHDTHSCSTLIHILSRSRLKSHASEIIRLALRLAATDEDEDRVLKVF 149

Query: 183 QSLVSTCGNFGSIGLVSDLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLV 242
           +SL+ +    GS   V DLL+++ + ++++       R LRS+G++  I+ CN+L+  + 
Sbjct: 150 RSLIKSYNRCGSAPFVFDLLIKSCLDSKEIDGAVMVMRKLRSRGINAQISTCNALITEVS 209

Query: 243 KIGWVDLAWEIFGEV 248
           +       ++++ EV
Sbjct: 210 RRRGASNGYKMYREV 223

[Close]

BLAST of Carg25420 vs. TAIR10
Match: AT4G26680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 6.9e-05
Identity = 36/164 (21.95%), Postives = 77/164 (46.95%), Query Frame = 0


Query: 82  LKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLKFIDLVSSSCPNLKHSSISLSAMV 141
           L Q++   L+     L+   +  VL   +++  L L+F +   +  P   HS  + + ++
Sbjct: 64  LIQSDWDKLNKLSDHLDSFRVKNVLLKIQKDYLLSLEFFNWAKTRNPG-SHSLETHAIVL 123

Query: 142 HFLVRGRRLSEAQACILRMVRKSGVS-RVEVVQSLVSTCGNFGSIGLVSDLLVRTYVQAR 201
           H L + R+   A++ +  ++   GV    +V  +L+ +     S   V D L +T+   +
Sbjct: 124 HTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDSLFKTFAHLK 183

Query: 202 KLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVDLAWEIF 245
           K R  ++ F  ++  G   ++ +CN+ +  L+  G VD+A   +
Sbjct: 184 KFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFY 226

[Close]

BLAST of Carg25420 vs. TAIR10
Match: AT1G09820.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 43.5 bits (101), Expect = 7.7e-04
Identity = 37/157 (23.57%), Postives = 71/157 (45.22%), Query Frame = 0


Query: 82  LKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLKFIDLVSSSCPNLKHSSISLS--- 141
           +++ + S L   +  +NP+ L   L     +  L L++   +      +K+S IS+S   
Sbjct: 50  IEKQHWSKLGVHVTDINPNELFRQLISSELDPDLCLRYYSWL------VKNSDISVSLEL 109

Query: 142 --AMVHFLVRGRRLSEAQACILRMVRKSGVSRVEVVQSLVSTCGNFGSIGLVSDLLVRTY 201
              ++H L   +R S+ ++ +   VR     +V  +   +S C N     +++D+LV  Y
Sbjct: 110 TFKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAISMCDNVCVNSIIADMLVLAY 169

Query: 202 VQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVK 234
               +   G EAF+     G  +S  +C  L+  L+K
Sbjct: 170 ANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLK 200

[Close]

BLAST of Carg25420 vs. Swiss-Prot
Match: sp|Q9LFC5|PP360_ARATH (Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana OX=3702 GN=At5g01110 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 3.5e-54
Identity = 111/175 (63.43%), Postives = 140/175 (80.00%), Query Frame = 0


Query: 70  SNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLKFIDLVSSSCPN 129
           S+SFLVEKI FSLKQ N +++ N L RLNP A+VEVLY CR +L LG +F+D +    PN
Sbjct: 50  SDSFLVEKICFSLKQGN-NNVRNHLIRLNPLAVVEVLYRCRNDLTLGQRFVDQLGFHFPN 109

Query: 130 LKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVEVVQSLVSTCGNFGSIGLVS 189
            KH+S+SLSAM+H LVR  RLS+AQ+C+LRM+R+SGVSR+E+V SL ST  N GS   V 
Sbjct: 110 FKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVF 169

Query: 190 DLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVDLAWEIF 245
           DLL+RTYVQARKLRE  EAF +LRSKG +VSI+ACN+L+G LV+IGWV+LAW ++
Sbjct: 170 DLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVY 223

[Close]

BLAST of Carg25420 vs. Swiss-Prot
Match: sp|Q9XIM8|PP155_ARATH (Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana OX=3702 GN=At2g15980 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.1e-07
Identity = 50/195 (25.64%), Postives = 89/195 (45.64%), Query Frame = 0


Query: 63  VSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALV-----EVLYGCRENLHLGL 122
           VSS  S  +  L+   +  L  +   S  ++L  L PS        E+    R N HL L
Sbjct: 30  VSSPPSXXSDPLISDAVSILTHHRSKSRWSTLRSLQPSGFTPSQFSEITLCLRNNPHLSL 89

Query: 123 KFIDLVSSSCPNLKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSR-----VEVV 182
           +F  L +       H + S S ++H L R R  S A   I   +R +         ++V 
Sbjct: 90  RFF-LFTRRYSLCSHDTHSCSTLIHILSRSRLKSHASEIIRLALRLAATDEDEDRVLKVF 149

Query: 183 QSLVSTCGNFGSIGLVSDLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLV 242
           +SL+ +    GS   V DLL+++ + ++++       R LRS+G++  I+ CN+L+  + 
Sbjct: 150 RSLIKSYNRCGSAPFVFDLLIKSCLDSKEIDGAVMVMRKLRSRGINAQISTCNALITEVS 209

Query: 243 KIGWVDLAWEIFGEV 248
           +       ++++ EV
Sbjct: 210 RRRGASNGYKMYREV 223

[Close]

BLAST of Carg25420 vs. TrEMBL
Match: tr|A0A1S3BNF5|A0A1S3BNF5_CUCME (pentatricopeptide repeat-containing protein At5g01110 OS=Cucumis melo OX=3656 GN=LOC103491986 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 5.7e-86
Identity = 179/250 (71.60%), Postives = 204/250 (81.60%), Query Frame = 0


Query: 1   MAAHRLPLPKPTFRTRIIASTVTYATPLLRSNSISFTFHLFYSLPK--FHSIHDEAAGSS 60
           MA HRLPLPK TFR+ I++S  T +TPLL +N  SF  H  YS        +  ++    
Sbjct: 1   MAVHRLPLPKSTFRSGILSSKFTSSTPLLPTNFNSFKLHTIYSPSNTALRFLQTQSTPGP 60

Query: 61  NHGPVSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLK 120
            + PVSSSVS S+SFL+EKILFSLKQNNVS L +SL RL+PS L++VL+ CRE+LHLGLK
Sbjct: 61  LYDPVSSSVSPSDSFLLEKILFSLKQNNVSYLRDSLLRLSPSLLLQVLFRCREDLHLGLK 120

Query: 121 FIDLVSSSCPNLKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVEVVQSLVST 180
           FI LVS   PN KHSS+SLSAMVHFLVRGRRLSEAQACILRMVRK GVSRV+VV+SL+ST
Sbjct: 121 FIGLVSYYFPNFKHSSLSLSAMVHFLVRGRRLSEAQACILRMVRKRGVSRVKVVESLIST 180

Query: 181 CGNFGSIGLVSDLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVD 240
           C NFGSIGLV DLLVRTYVQA+KLREGSEAF+ILR KGVSVSINACN LLGGLV+ GWVD
Sbjct: 181 CFNFGSIGLVYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVD 240

Query: 241 LAWEIFGEVV 249
           LAWEI+GEVV
Sbjct: 241 LAWEIYGEVV 250

[Close]

BLAST of Carg25420 vs. TrEMBL
Match: tr|A0A2P4J892|A0A2P4J892_QUESU (Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_49702 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.8e-71
Identity = 157/248 (63.31%), Postives = 179/248 (72.18%), Query Frame = 0


Query: 1   MAAHRLPLPKPTFRTRIIASTVTYATPLLRSNSISFTFHLFYSLPKFHSIHDEAAGSSNH 60
           MA  RL   KP  R R + +   Y  P   + + S + H   S PK  S HD     +  
Sbjct: 1   MATQRLLFQKPFLRVRTLTA---YTRPSFHAQAYSHSPHSLSSPPKPDSNHDLRTLQTQE 60

Query: 61  GPVSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLKFI 120
            P SS+ S S+SFLVEKILFSLKQ N S L N LFRLNP  +VEVL  CRENL LG KF+
Sbjct: 61  EPTSSTPSVSDSFLVEKILFSLKQGNPSPLRNYLFRLNPLVVVEVLCRCRENLQLGQKFV 120

Query: 121 DLVSSSCPNLKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVEVVQSLVSTCG 180
           DL+  +CPN KHSS SLSAMVH LVR RRLS+AQ+ ILRMVRKSGVSR E+V+SLVS C 
Sbjct: 121 DLIVLNCPNFKHSSQSLSAMVHVLVRSRRLSDAQSLILRMVRKSGVSRGEIVESLVSMCD 180

Query: 181 NFGSIGLVSDLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVDLA 240
           N     LV DLL+RTYVQARKLREGSEAFR+LRSKG  VSINACNSLLGGLVK+GWVDLA
Sbjct: 181 NLEWSSLVFDLLIRTYVQARKLREGSEAFRVLRSKGFCVSINACNSLLGGLVKVGWVDLA 240

Query: 241 WEIFGEVV 249
           W+++GEVV
Sbjct: 241 WDVYGEVV 245

[Close]

BLAST of Carg25420 vs. TrEMBL
Match: tr|A0A2N9GBK4|A0A2N9GBK4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24641 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 3.0e-71
Identity = 155/249 (62.25%), Postives = 179/249 (71.89%), Query Frame = 0


Query: 1   MAAHRLPLPKPTFRTRIIASTVTYATPLLRSNSISFTFHLFYSLPKFHSIHDEAAGSSNH 60
           M+  RL   KPT R R + +   Y  P   + + S + H F S P     H      +  
Sbjct: 1   MSTQRLLFQKPTIRVRTVTA---YKKPSFYAQTYSHSPHSFSSPPN----HGLRTLQTQE 60

Query: 61  GPVSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLKFI 120
            P SS+ S S+SFLVEKI FSLKQ N +SL N LFRLNP  ++EVL  CRENL LG KF+
Sbjct: 61  EPTSSTPSVSDSFLVEKIFFSLKQGNTNSLRNYLFRLNPLVIIEVLCRCRENLQLGQKFV 120

Query: 121 DLVSSSCPNLKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVEVVQSLVSTCG 180
           DL+  +CPN KHSS SLSAM H LVR RRLS+AQ+ ILRMVRKSGVSR E+V+SLVS C 
Sbjct: 121 DLIVLNCPNFKHSSQSLSAMAHVLVRSRRLSDAQSLILRMVRKSGVSRGEIVESLVSICD 180

Query: 181 NFGSIGLVSDLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVDLA 240
           N G   LV DLL+RTYVQARKLREGSEAFR+LRSKG  VSINACNSLLGGLVK+GWVDLA
Sbjct: 181 NLGWNSLVFDLLIRTYVQARKLREGSEAFRVLRSKGFCVSINACNSLLGGLVKVGWVDLA 240

Query: 241 WEIFGEVVR 250
           WE++GEVVR
Sbjct: 241 WEVYGEVVR 242

[Close]

BLAST of Carg25420 vs. TrEMBL
Match: tr|A0A2P5DR41|A0A2P5DR41_PARAD (Tetratricopeptide-like helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_040230 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.1e-65
Identity = 152/251 (60.56%), Postives = 180/251 (71.71%), Query Frame = 0


Query: 1   MAAHRLPLPKPTFRTRIIASTVTYATPLLRSNSISFTFH---LFYSLPKFHSIH------ 60
           MA HRL L KP     I+ + + +A PL + +     FH   L +S PK +S H      
Sbjct: 1   MATHRLLLQKP-----ILITLLNFAKPLQKPH-----FHDIWLLFSSPKSYSSHGVGALQ 60

Query: 61  -DEAAGSSNHGPVSSSVSASNSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCR 120
             EA G  N  PVSS+ S S S   EKIL  LKQ N +SL N L +LNP  +VEVL  CR
Sbjct: 61  VQEAYGIPNPEPVSSN-SLSESIFAEKILLGLKQGNPNSLRNYLVQLNPLVVVEVLSRCR 120

Query: 121 ENLHLGLKFIDLVSSSCPNLKHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVE 180
           EN  LG+KF+DLV  +CPN+KHSS+SLS M+H LVRGRRLSEAQA +LRMVR+SG+SRVE
Sbjct: 121 ENFQLGMKFVDLVLLNCPNMKHSSLSLSVMIHILVRGRRLSEAQALVLRMVRRSGISRVE 180

Query: 181 VVQSLVSTCGNFGSIGLVSDLLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGG 240
           VV+S VSTC + GS  +V DLLVRTYVQA+KLREGSE FR+LRSKG+ VSINACNSLLGG
Sbjct: 181 VVESFVSTCVSCGSNPMVFDLLVRTYVQAKKLREGSEVFRMLRSKGLRVSINACNSLLGG 240

Query: 241 LVKIGWVDLAW 242
           LVK+GWVDLAW
Sbjct: 241 LVKVGWVDLAW 240

[Close]

BLAST of Carg25420 vs. TrEMBL
Match: tr|A0A1U8P2A5|A0A1U8P2A5_GOSHI (pentatricopeptide repeat-containing protein At5g01110-like OS=Gossypium hirsutum OX=3635 GN=LOC107954324 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 5.5e-65
Identity = 132/179 (73.74%), Postives = 152/179 (84.92%), Query Frame = 0


Query: 71  NSFLVEKILFSLKQNNVSSLSNSLFRLNPSALVEVLYGCRENLHLGLKFIDLVSSSCPNL 130
           +SF+VEKILFSLKQ N +SL N  FR+NP  +VEVL  CRENL LG +F+D +  +C N 
Sbjct: 35  DSFMVEKILFSLKQGNANSLRNYRFRINPLIVVEVLLHCRENLQLGKRFVDFIVLNCSNF 94

Query: 131 KHSSISLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVEVVQSLVSTCGNFGSIGLVSD 190
           KHSS+SLSAM+H LVR  RLS+AQA +LRMVRKSGVSRVE+V+SLVSTCGNFGS G V D
Sbjct: 95  KHSSMSLSAMIHVLVRCGRLSDAQALVLRMVRKSGVSRVEIVESLVSTCGNFGSNGSVFD 154

Query: 191 LLVRTYVQARKLREGSEAFRILRSKGVSVSINACNSLLGGLVKIGWVDLAWEIFGEVVR 250
           LL+R+YVQARKLREGSEAF ILRSKG  VSINACNSLLGGLVKIGWVDLAW+++ EVVR
Sbjct: 155 LLIRSYVQARKLREGSEAFMILRSKGFCVSINACNSLLGGLVKIGWVDLAWQVYNEVVR 213

The following BLAST results are available for this feature:

BLAST of Carg25420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933790.1	1.5e-130	100.00	pentatricopeptide repeat-containing protein At5g01110 [Cucurbita moschata]	[more]
XP_023530884.1	3.8e-126	96.00	pentatricopeptide repeat-containing protein At5g01110 [Cucurbita pepo subsp. pep...	[more]
XP_022973817.1	6.5e-126	96.39	pentatricopeptide repeat-containing protein At5g01110 [Cucurbita maxima] >XP_022...	[more]
XP_008450352.1	8.6e-86	71.60	PREDICTED: pentatricopeptide repeat-containing protein At5g01110 [Cucumis melo] ...	[more]
XP_022153215.1	8.6e-86	73.81	pentatricopeptide repeat-containing protein At5g01110 [Momordica charantia] >XP_...	[more]

BLAST of Carg25420 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G01110.1	1.9e-55	63.43	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G15980.1	3.9e-08	25.64	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G26680.1	6.9e-05	21.95	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G09820.1	7.7e-04	23.57	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

BLAST of Carg25420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LFC5\|PP360_ARATH	3.5e-54	63.43	Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9XIM8\|PP155_ARATH	7.1e-07	25.64	Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg25420 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BNF5\|A0A1S3BNF5_CUCME	5.7e-86	71.60	pentatricopeptide repeat-containing protein At5g01110 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A2P4J892\|A0A2P4J892_QUESU	1.8e-71	63.31	Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_4...	[more]
tr\|A0A2N9GBK4\|A0A2N9GBK4_FAGSY	3.0e-71	62.25	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24641 PE=4 SV=1	[more]
tr\|A0A2P5DR41\|A0A2P5DR41_PARAD	1.1e-65	60.56	Tetratricopeptide-like helical domain containing protein OS=Parasponia andersoni...	[more]
tr\|A0A1U8P2A5\|A0A1U8P2A5_GOSHI	5.5e-65	73.74	pentatricopeptide repeat-containing protein At5g01110-like OS=Gossypium hirsutum...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25420-RA	Carg25420-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 187..275 e-value: 8.4E-14 score: 53.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 493..565 e-value: 2.5E-26 score: 94.3 coord: 276..351 e-value: 2.2E-25 score: 91.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 577..748 e-value: 2.6E-50 score: 173.5 coord: 352..492 e-value: 2.4E-42 score: 147.4
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 534..583 e-value: 4.2E-19 score: 68.3 coord: 289..338 e-value: 1.5E-17 score: 63.4 coord: 221..268 e-value: 2.7E-9 score: 37.0 coord: 465..513 e-value: 5.2E-19 score: 68.1 coord: 362..408 e-value: 2.8E-10 score: 40.1 coord: 639..687 e-value: 6.2E-15 score: 55.0
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 426..457 e-value: 7.7E-12 score: 44.6 coord: 600..632 e-value: 2.1E-10 score: 40.1 coord: 705..737 e-value: 5.9E-6 score: 25.8
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 292..324 e-value: 5.1E-10 score: 36.9 coord: 257..291 e-value: 8.6E-5 score: 20.5 coord: 397..430 e-value: 8.5E-6 score: 23.6 coord: 642..676 e-value: 1.1E-6 score: 26.5 coord: 467..500 e-value: 3.7E-10 score: 37.3 coord: 432..466 e-value: 1.9E-8 score: 32.0 coord: 713..742 e-value: 2.4E-5 score: 22.2 coord: 677..710 e-value: 2.9E-9 score: 34.5 coord: 328..361 e-value: 3.9E-9 score: 34.1 coord: 363..395 e-value: 9.2E-7 score: 26.7 coord: 607..640 e-value: 2.1E-9 score: 34.9 coord: 502..536 e-value: 6.3E-10 score: 36.6 coord: 223..255 e-value: 0.0017 score: 16.4 coord: 537..570 e-value: 1.3E-12 score: 45.1 coord: 572..605 e-value: 6.0E-9 score: 33.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 133..168 score: 6.84
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 710..744 score: 10.194
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 290..324 score: 14.239
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 605..639 score: 12.726
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 325..359 score: 12.288
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 465..499 score: 12.814
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 220..254 score: 8.813
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 640..674 score: 10.139
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 535..569 score: 14.239
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 500..534 score: 13.439
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 395..429 score: 11.564
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 255..289 score: 10.918
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 360..394 score: 12.529
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 675..709 score: 13.844
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 570..604 score: 12.66
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 430..464 score: 11.718
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 185..219 score: 5.875
None	No IPR available	PANTHER	PTHR24015:SF770	SUBFAMILY NOT NAMED	coord: 127..729
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 127..729
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 543..742
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 464..563 coord: 299..427

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25420	Csa1G627440	Cucumber (Chinese Long) v2	carcuB0457
Carg25420	MELO3C015131	Melon (DHL92) v3.5.1	carmeB0432
Carg25420	ClCG03G012670	Watermelon (Charleston Gray)	carwcgB0417
Carg25420	CSPI01G30890	Wild cucumber (PI 183967)	carcpiB0462
Carg25420	CmaCh11G008780	Cucurbita maxima (Rimu)	carcmaB0590
Carg25420	CmoCh11G008870	Cucurbita moschata (Rifu)	carcmoB0575
Carg25420	Lsi06G005730	Bottle gourd (USVL1VR-Ls)	carlsiB385
Carg25420	Cp4.1LG04g12340	Cucurbita pepo (Zucchini)	carcpeB0596
Carg25420	CsGy1G030150	Cucumber (Gy14) v2	carcgybB0433
Carg25420	MELO3C015131.2	Melon (DHL92) v3.6.1	carmedB0434
Carg25420	CsaV3_1G043280	Cucumber (Chinese Long) v3	carcucB0458
Carg25420	Bhi02G001255	Wax gourd	carwgoB0510

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25420	Cucurbita maxima (Rimu)	carcmaB0589
Carg25420	Cucurbita moschata (Rifu)	carcmoB0574
Carg25420	Cucurbita pepo (Zucchini)	carcpeB0595
Carg25420	Watermelon (97103) v2	carwmbB0448