Carg25166 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25166
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	YbaK/aminoacyl-tRNA synthetase-associated domain
Location	Cucurbita_argyrosperma_scaffold_199 : 91681 .. 98061 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTGTCAAAAAGAAAGAAGGAAACTGCATTCATCCGAATTGCCCAATGGGGACCGAGGCTGGAGCAATGGCAGAGCGAAACTCCATGGAAGCTCTAGCGAAGCTCGAATACCGCCAGACCCTAATCATCAATCGAATTTCGAAGCTCGAGCTCGCTTATCTTCCAAATCTCGACTCGGAACCTTCTCCTATTTCCTCTGAGGGGGCAGATGGCGACACCGTGGCTCGACTCTCCACCATTCTTCGAACCAACGCTGTCAATGACTTCTCCTTCAAGAGGGTTCCCTCTGATTACTACGATTGGTCTCTCGAAGCCCGACGGGACGTTCTTAATGCCGCTTCGGTTGACCATCTCTGCAAGAGCATTGTTCTGGTGCGTTTTGGAATCGGATTCTTTTTTTTTTTTTGCAATTTCGATATGTGATTTTGTATTGACGATTTCGAGTGCGTATGTTTATTGCTTTTAGGCCTTTTTCATTAGTTACTTTTGGGTTTGAAGGAATGGGTAGAATTGGATTAATGAGAGGAAATGTTTGGATCGAATGATGGCGTTTATTAAAATGCCTCTCTTCCTGAAAAAATTATTTCAGGGTGGAACAGTATGGCCAATGATTTTGCACCATTTGAAACTTATTGGATGCGAGAGAACTAAAAAATGTATTTCAAATCTTTATTGAATGGTTTTTAGTGGTAGACATTTTGAACCTGAATTCAACGGTCATTAGAGAGCAGTCAGTGTCTAGTCCCCTTCCTGAGTTATAACACTGTTGGGGAGGGACAAACATTTTCAGCTAGTTGAAAATTGAAATGAATTGAACCAAGCATTTATGTTGTGCTTTATTCAAGTCCTTATGTAATCATACTTCCAATGTAATTAGTACTAGTTGAGATTCTAGTTTTCTGTAATGAAAATGACATCGCATTACATTACATTGTGATCATATATGCTCTCGAGAATTCCTATGTTTTATGCTGGGTTGCTTGAGACCATCTCTTTGGTGGCAAACACGGGGCTTTTTGATAGCATCATGGGATCTTTGTGAAAAGCTTTGGTGTTGAAGGAGGATTTGAGATGGAACTGAACTATATTTGTATGATTTTCTCGGAGCTTGTGCATTTTGTAGTTTTTTTTTACTCTTATATATAATTTTTTTTCTGTGCTAATCGGAGAATGTGTTACATTCTTGAAAGGTTTCTATTCATCCTTATGTTAAATGGATTGATTTGGGAAATTTTCATAAAAGAACTAAATAATTCTTACAATACATAAGTATTTTCAGCTTCCAAATAGTTCTCGGCTTAGGCGTTCAAGGATTTTACTTTTAACAAAGTAAATTCTTCTCATCAACACTTGAAAGGAAGAGAAAGAAGGGAAAGAAAAGGCCTTATTTGTTCCTTTTGCATATATGTTGTTGATATAATTTGACAATTGTTAGATGTATGACTGTCAGTTTAAAGATGATAGAAAAATTTCATTGTTAGCTACTGTATGGCTTATGGCATCAATTTTTAATCGAATTTTGGTTGATAAGAACTCGACATTTATATATATTATATACAATATACCATATCTAGAAGTTCAATTAGGACCTCTCCTTCCTAGGCCATGCTTTTGTAGATGCTAAAACGTAACTGGGATTGCGTGTACTTCTGTTTTGTACTGTCAGGTAAATACTCAAGCCCAATCTCATGTCGTTGATTGCAGTAACCGCAACAATTCAAAATACTATGTTGTTGTTGTTCAGGTATGCCTTCCTTTCTAATTTTTTCTAAACAGTTTGATCTAATGACCTGTATTCTCCTCTTTTAAAACATAACATTTCTTTATGTAGTATTCTGCTAAATTCAATGCTGAAACTGTTAGAAGCTTCTTGTATTCACTCAACGATGGAAAGATACCAAAAAAGAAATTCAACTGTAAGTTTTCTATTATCCCATTGGTGATGCCTTAATGGTTCCAATTGTAGTAATCCAAATTTTAGTTTACTTGATTCATTAATTGTTAATATATTCACATACATGCTTTGATTAAGTTAAGTGAGAAGGAGATCATGACACGATTCAAGCACCGTCACTTTGGGCATGCTTTGATTAATATAGATGAAAGAACAAGAGGGGGCCATAAAAACCAAACCAAACCAACCACGAGAAAAAATTACTGAAAAAAAAAGGAAAATCTCTAAACAAATTATACTTGAAATGCCAAGGGGAGGCACTGATGTTTCAGATACTATAGTGGCTTGAAGTTTTCTTATTCATGGTTTCCTATTTGCACAGTGAGACTTGCTCCAGAGGAGATATCTGCAGAGCTAACTGGATATGTGCATAATGCAGTGACATGCATTGGCATGAAAACGGATATTCCGGTAAGATTGTTAATGTTTGACTTGATAAATTGTAGATTTGAAATTATTCTAGCTCGAGCAACCCATATTTAAATCTTTGTTCTGAATTTTTACATATATGCTTTAATTTTTAAAGATCCCATCCCGTAATCGATATGCTCGTTTCTTAATTTGCCCCTAAATTTTCGAAGTGGTACATGTTATTTTGTGCAAATGTGATGGTGGCCAATTTTGTTGTAGGGTTCTTCTTTTCTTCTCTTGTTGGATGCAAGGCTAATTTTTTAGTAAATTCTACTTTACAATCTGTGTTCTATGATTTCATTGTGAAAATCTGTGACTACGTATAAAATCTACCCTTATCTGGAGATTACCATAACTAACTGGGATAAGATAGGAAACCTAAATGGGGATTAGACAAGAAAACGACTATCTATTCACGTTCAGACAACCATTGATATCATCACTAAAGGATGGAAAGTGAGAATGATTCACTAAGAAGAGAGTAAACCCAACTTGGACTAAGTTAAAAAAAAAAGAACCAATGGCTCGGTCGGATAAATTGTTTCCATTCGGGTATTGGGAATAACTCAAAAAATTGAAATTTCATTATTTCCCTTCTCAGATTTAAGATCGTTCAATTTTCTTCTTGGTATTTTGTATTGAAGAGATTAGTGCTAGAATGTTCTTTTTGACCATGACTTGGTTTATGAAACACCTTCAAGGACAGAGGTATTATCTCCACCCTGACTAGACTCCAGCTTCCTTATCATTGGGCAATATCAACTCATGGATTTCTCATTTCGAGCCTGATTTTCTAATAGAACTTAATAGCTATGAACAATATAGTTGTAAGCAAGGCAGTTTGTTAAGAATTGTTGAGACTATTCTCATAAATAGAAGGGAGGTAGGCATTATTATAGAGGTTTTCCCTTGAGTGTGCTCAAGAGGGAAGTGTCCAATACCTCAAATTACTTGGGAGTTTTAGGTTGTATCTTTTACCTTATTATCTTTCAGTGTTTCCAAGTCTTATTACGTGATCTTTTAACATTCCTTCAATTACCCCACTCGTGGCATAGGAGGGGCTGAAGCATGGTCTAATTGTTGGAGAAATTATTTGATGGGGTGTCATAATGTGACCGACAATTTTGCGTTGTTGGATGTGGAAGAGAGAAATATAAATGTACTTCACATTTGTATTTGTCCAACGGTAGGATATATGTAAACAAATGAATCTTCTCGTCGTCAAGGAATCTCATTGTCCAATTTTGCTACACCTTAGGCTTACATTAGAAACTATCTGACTCTACTATCTAGGATTGACAAAGTTGTTCTTGGCATCTGTTGAGTGACCATGTTGTTCTTCAGCCTTCACCTTCCCTGAAATGGAACCTAGGCCGTGTTTTGATATGCAAGAGCAAGCATGGAGGTTTTAACTGTATTGTTTGAGCTACAGCTTCCGCAAAGGAAGCTGTATGAGACCTTGAAGGAAGATCAATGAACATGAAGGAAGTACAATTTATATTTCTTTATAAGAATTTGAGCTTTCATTCAGATAAAATGAAAGAATACAAAAGGACATTGAATAAGGTAGCCCAACAAGAGAGGCTAAGCAACTAACTATACAAAAGGTCAACCAGGTTGTCCAATATCAGGAATTACAATAAAAAGTGAAAACAAATAAAAAAGAGGTAAAATTTTTCTATCTTGTTGATACCTGGTGACATTATTTGAGGTAAAATGAATCAACTGTTCCTAAATCTTCCGAGAATTTTTCTTCTTCTTGGATATTCACATAGTTTATCAGGATATTCTGAGACTATGTGTTGAATCTGTTCTTCAAGGTAAGGAAGCATTAAGAAGAAGCTAAAGGTAAGTGATCATTGAATTGGAACATGCCTTGTTCAAGCTGAGAAATGTGAATAAAATAACTGGAATGCTATATAACTAGAATGCTTGCTGATCAGTAACTTCGGCATGCTTTGTGCGACCGTAGTGGGTGTTCCATTGAACAGGAGAAAAGTTGGTACTATGAAATTGGCCCACATCTCGGGTCAAGTTATGTTTAGGGGGCACTGTAATGATAGTGTAGCTATTAGAAGCATATTATTAGTCACTAGTTATTGGTTGGGGTGTGAGGTAAGTTACTGAGAATTGGATTGCTCTTCAAGAGAAGGTTAAATTTAGAGTACACAAATCTTGGGAATGGTTTCTAGAGGTAACAAGTGCCTTAAATGCTTAGTGAACCTTTTTATTTCACTTTGATATTGTCAAGTACATTTCTTTTCTTTGAAATAAGAAACAAATTTCGTCGATGTGATGAAAAGACACAACCAAGAACGTAAACAATTTCAAATCAGAATTATCATTACTAAAACATCTAAATAAAGCACTTTAAGAAGATTAATGATGGAATGCTTGATTTTGCGTTACAAGATGCATCACAATTAGATATGAGCCGATATTGTCTTGATTTCAAGCTCAAGCTCAGGAACTCGATAAATTGTTCCTCGTCAAAACACATAAAATGCCACGAAGGTTGGAGAAACGGTGCTCGGATGGTTGATTATTTCAAATGATCACCTCTTCCAACTTTAATGGCTATAAAAAAAATCATGAAAAAGAAAACTGGCCCAGAATCCCAGTAGATATTTTCTACTTTCCACTGAACATATATTACATACTTGGTACAAATCTTTCTTATCCAAGTGAACCCTTGCTACAACTAACAAGGATATCAAACAAACTCCGAATGAACAGAGATCAGATGATGAAAATATATTATTTAGCCTGGTAATATCGTCCTTAATTACGAGTAAGACGCATGAAGTTAATAAATCAAATATTTCAACATTAGCATATAGGCTCTGATGCTCATTTGGAACTGCCAGAAATGTATTACAATAATAGACATTTTTGCTCATTCTGATCTGTGTGAAATGCGTATTTCTCCATGTTGGATCTTTTTTGATCCTCTTGCTTCTGATTTTTGTCCAGCTTCCAGCTACTGTGCTGGACCAGTGTTTCAAATGTCATGTCTGTCACATTTTGTGTTGGACAGTATTTTGTGGTCCACTATAGCTTTTGCCTAGACCAATGATTTCCTGCCAGTCTGCCACCACCGAAAAATGCCTCGATCGGAAATTAGAACTAAAACCTGGTTGTTCGACAGCAAAAGTGTGTGCTCGAACACAAAATGGTTCTGACATGCCTAAGTGTTAAGCAGATAATCTATCAGTGGGTGGGTAGATTGATGAAATTGTCACACCAACTAAAAAGCATGGAAGATCAGCCTACAAATATAAACAGAAAAATGTTCCCTTCTTTCTGAATTCTGATGCATCATGACTATATTTGTATGGTAAATCTCAATCTTGTTCATCATGCTCTAATCGATCAATTACACTCTTGTTTCAGGTGATTTTGGACGAAGCGATTGCGAAACTAAGTCCTGATTATTTTTGGCTGGGCGGTGGGGAAGTCGACCTGAAGTTAGGTATCAGGACATCAGAGTTCATAAACTTTGTTAAACCCTTCATTATCAAGTGTAGCTAGAGAATCAGTTTTCAGCCAGTTCGCCCTGCCCAAGCTCAACGACAACTCAACACAACCGACTAATACCAACAGGATCAAGGTTTTTAGTATCGTTTTATTTAAATTATTTCTGCTTCTGAGGATCAACTGTTTGGATGGAAGCAAGAACATAAAAAAACTAAAAAGTTTCAGTGCTTAGAAATGGGATTCAGCTACTTAGAATGGCGGAAGTTGTTACAATCTAACCATTTAATAGGGCATTAATGATTTTGATTAAAGGACCACTTTCAACTTCAGCAATTCATTATATGATTATGATATGTGAGTAATAAAAGTGAGTAGCAAACATACGCAGAATTTGTTGATCAAAATGGAGCAACTTTGCAATTCATGTACGCAGAATCAAGAACATGGAGTAGTCATATCAAAGAAATTGCCGGTGTCTTTTTGTGAACATTTATGAGGGATGCTACTTTACTTGGCTGCATCAGCGCAAGACTACGG

mRNA sequence

AAATTGTCAAAAAGAAAGAAGGAAACTGCATTCATCCGAATTGCCCAATGGGGACCGAGGCTGGAGCAATGGCAGAGCGAAACTCCATGGAAGCTCTAGCGAAGCTCGAATACCGCCAGACCCTAATCATCAATCGAATTTCGAAGCTCGAGCTCGCTTATCTTCCAAATCTCGACTCGGAACCTTCTCCTATTTCCTCTGAGGGGGCAGATGGCGACACCGTGGCTCGACTCTCCACCATTCTTCGAACCAACGCTGTCAATGACTTCTCCTTCAAGAGGGTTCCCTCTGATTACTACGATTGGTCTCTCGAAGCCCGACGGGACGTTCTTAATGCCGCTTCGGTTGACCATCTCTGCAAGAGCATTGTTCTGGTAAATACTCAAGCCCAATCTCATGTCGTTGATTGCAGTAACCGCAACAATTCAAAATACTATGTTGTTGTTGTTCAGTATTCTGCTAAATTCAATGCTGAAACTGTTAGAAGCTTCTTGTATTCACTCAACGATGGAAAGATACCAAAAAAGAAATTCAACTTGAGACTTGCTCCAGAGGAGATATCTGCAGAGCTAACTGGATATGTGCATAATGCAGTGACATGCATTGGCATGAAAACGGATATTCCGGTGATTTTGGACGAAGCGATTGCGAAACTAAGTCCTGATTATTTTTGGCTGGGCGGTGGGGAAGTCGACCTGAAGTTAGGTATCAGGACATCAGAGTTCATAAACTTTGTTAAACCCTTCATTATCAAGTGTAGCTAGAGAATCAGTTTTCAGCCAGTTCGCCCTGCCCAAGCTCAACGACAACTCAACACAACCGACTAATACCAACAGGATCAAGGTTTTTAGTATCGTTTTATTTAAATTATTTCTGCTTCTGAGGATCAACTGTTTGGATGGAAGCAAGAACATAAAAAAACTAAAAAGTTTCAGTGCTTAGAAATGGGATTCAGCTACTTAGAATGGCGGAAGTTGTTACAATCTAACCATTTAATAGGGCATTAATGATTTTGATTAAAGGACCACTTTCAACTTCAGCAATTCATTATATGATTATGATATGTGAGTAATAAAAGTGAGTAGCAAACATACGCAGAATTTGTTGATCAAAATGGAGCAACTTTGCAATTCATGTACGCAGAATCAAGAACATGGAGTAGTCATATCAAAGAAATTGCCGGTGTCTTTTTGTGAACATTTATGAGGGATGCTACTTTACTTGGCTGCATCAGCGCAAGACTACGG

Coding sequence (CDS)

ATGGGGACCGAGGCTGGAGCAATGGCAGAGCGAAACTCCATGGAAGCTCTAGCGAAGCTCGAATACCGCCAGACCCTAATCATCAATCGAATTTCGAAGCTCGAGCTCGCTTATCTTCCAAATCTCGACTCGGAACCTTCTCCTATTTCCTCTGAGGGGGCAGATGGCGACACCGTGGCTCGACTCTCCACCATTCTTCGAACCAACGCTGTCAATGACTTCTCCTTCAAGAGGGTTCCCTCTGATTACTACGATTGGTCTCTCGAAGCCCGACGGGACGTTCTTAATGCCGCTTCGGTTGACCATCTCTGCAAGAGCATTGTTCTGGTAAATACTCAAGCCCAATCTCATGTCGTTGATTGCAGTAACCGCAACAATTCAAAATACTATGTTGTTGTTGTTCAGTATTCTGCTAAATTCAATGCTGAAACTGTTAGAAGCTTCTTGTATTCACTCAACGATGGAAAGATACCAAAAAAGAAATTCAACTTGAGACTTGCTCCAGAGGAGATATCTGCAGAGCTAACTGGATATGTGCATAATGCAGTGACATGCATTGGCATGAAAACGGATATTCCGGTGATTTTGGACGAAGCGATTGCGAAACTAAGTCCTGATTATTTTTGGCTGGGCGGTGGGGAAGTCGACCTGAAGTTAGGTATCAGGACATCAGAGTTCATAAACTTTGTTAAACCCTTCATTATCAAGTGTAGCTAG

Protein sequence

MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVARLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS

Homology

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BLAST of Carg25166 vs. NCBI nr
Match: XP_022951583.1 (uncharacterized protein LOC111454353 [Cucurbita moschata])

HSP 1 Score: 473.8 bits (1218), Expect = 3.5e-130
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVA 60
           MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVA
Sbjct: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVA 60

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD
Sbjct: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH
Sbjct: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180

Query: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS
Sbjct: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 238

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BLAST of Carg25166 vs. NCBI nr
Match: XP_023538668.1 (uncharacterized protein LOC111799544 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 466.1 bits (1198), Expect = 7.2e-128
Identity = 234/238 (98.32%), Postives = 236/238 (99.16%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVA 60
           MGTEAGAMAERNSMEALAKLEYRQTLIINRI KLELAYLPNLDSEPSPISS+ ADGDTV+
Sbjct: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRILKLELAYLPNLDSEPSPISSDEADGDTVS 60

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD
Sbjct: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH
Sbjct: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180

Query: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS
Sbjct: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 238

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BLAST of Carg25166 vs. NCBI nr
Match: XP_023005520.1 (uncharacterized protein LOC111498483 [Cucurbita maxima])

HSP 1 Score: 464.9 bits (1195), Expect = 1.6e-127
Identity = 233/238 (97.90%), Postives = 236/238 (99.16%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVA 60
           MGTEAGA+AERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISS+ ADGDTV+
Sbjct: 1   MGTEAGAIAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSDKADGDTVS 60

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLSTILRTNAVNDFSF RVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD
Sbjct: 61  RLSTILRTNAVNDFSFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH
Sbjct: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180

Query: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS
Sbjct: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 238

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BLAST of Carg25166 vs. NCBI nr
Match: XP_008448863.1 (PREDICTED: uncharacterized protein LOC103490895 [Cucumis melo])

HSP 1 Score: 417.2 bits (1071), Expect = 3.9e-113
Identity = 204/238 (85.71%), Postives = 222/238 (93.28%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVA 60
           MG+E+ AMAE+NSMEALAKLE+RQTLI++RIS LEL YLPNLDS PS + S+GAD DTVA
Sbjct: 5   MGSESEAMAEQNSMEALAKLEHRQTLILHRISNLELKYLPNLDSPPSSVPSDGADDDTVA 64

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLS ILRTNAVNDFSFKRVPSDYYDW+LEARRDVL+AAS+DHLCKSIVLVNTQA SHVVD
Sbjct: 65  RLSAILRTNAVNDFSFKRVPSDYYDWALEARRDVLDAASIDHLCKSIVLVNTQAPSHVVD 124

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CS+RNNSKYY+VVVQY+AKFNAE V+SFLYSLNDGKI KKKFNLRLAPEE S +LTGY H
Sbjct: 125 CSDRNNSKYYIVVVQYTAKFNAEAVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEH 184

Query: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           N VTCIGMKTDIPVILDEAI KL+PDYFWLGGGE+DLKLGIRTSEFINFVKPFIIKCS
Sbjct: 185 NGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGEIDLKLGIRTSEFINFVKPFIIKCS 242

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BLAST of Carg25166 vs. NCBI nr
Match: XP_004147201.1 (PREDICTED: uncharacterized protein LOC101218396 [Cucumis sativus] >KGN55874.1 hypothetical protein Csa_3G020620 [Cucumis sativus])

HSP 1 Score: 375.9 bits (964), Expect = 9.9e-101
Identity = 190/239 (79.50%), Postives = 205/239 (85.77%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGA-DGDTV 60
           MGTE+ AMAE+NSMEA                 L+L  LPNLDS PS + S+GA D DTV
Sbjct: 1   MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTV 60

Query: 61  ARLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVV 120
           ARLS IL TNAVNDFSFKRVPSDYYDW LEARRDVL+AAS+DHLCKSIVLVNTQA SH+V
Sbjct: 61  ARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQAPSHIV 120

Query: 121 DCSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYV 180
           DCS+RNNSKYY+VVVQY+AKFNAET+RSFLYSLNDGKI KKKFNLRLAPEEISA+LTGY 
Sbjct: 121 DCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYE 180

Query: 181 HNAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           HN VTCIGMKTDIPVILDEAI KL+PDYFWLGGGE DLKLGIRTSEFIN+VKPFIIKCS
Sbjct: 181 HNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS 224

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BLAST of Carg25166 vs. TAIR10
Match: AT4G16510.1 (YbaK/aminoacyl-tRNA synthetase-associated domain)

HSP 1 Score: 318.9 bits (816), Expect = 2.6e-87
Identity = 160/233 (68.67%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 8   MAERNSME-ALAKLEYRQTLIINRISKLELAYLP-NLDSEPSPISSEGADGDTVARLSTI 67
           M +   ME A A+LE  Q  I+++IS LE ++LP N  + PSP S    + +TV RLSTI
Sbjct: 1   MDDGEGMETAAAELERLQIEILHKISILESSFLPQNSSAAPSP-SLPVDENETVTRLSTI 60

Query: 68  LRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRN 127
           L++  VNDF FKRV +DYYDW LE+RRDVL A+SVDHLCKSIVLVNTQA S+++DCS+ N
Sbjct: 61  LQSGGVNDFCFKRVATDYYDWPLESRRDVLGASSVDHLCKSIVLVNTQAASNILDCSDPN 120

Query: 128 NSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTC 187
           NSKYYVVVVQY+A+FNAE V+ FLYSLN+GKIPKK+FNLRLAPEE S +LTG+ HN VTC
Sbjct: 121 NSKYYVVVVQYTARFNAEAVKQFLYSLNEGKIPKKRFNLRLAPEETSIKLTGFEHNGVTC 180

Query: 188 IGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           IGMKT+IPVILDEAI KL PD+FWLGGGE+DLKLG+RTSEF+ FVKPFI+ CS
Sbjct: 181 IGMKTNIPVILDEAITKLKPDFFWLGGGEIDLKLGVRTSEFLEFVKPFIVPCS 232

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BLAST of Carg25166 vs. TrEMBL
Match: tr|A0A1S3BLB4|A0A1S3BLB4_CUCME (uncharacterized protein LOC103490895 OS=Cucumis melo OX=3656 GN=LOC103490895 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 2.6e-113
Identity = 204/238 (85.71%), Postives = 222/238 (93.28%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVA 60
           MG+E+ AMAE+NSMEALAKLE+RQTLI++RIS LEL YLPNLDS PS + S+GAD DTVA
Sbjct: 5   MGSESEAMAEQNSMEALAKLEHRQTLILHRISNLELKYLPNLDSPPSSVPSDGADDDTVA 64

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLS ILRTNAVNDFSFKRVPSDYYDW+LEARRDVL+AAS+DHLCKSIVLVNTQA SHVVD
Sbjct: 65  RLSAILRTNAVNDFSFKRVPSDYYDWALEARRDVLDAASIDHLCKSIVLVNTQAPSHVVD 124

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CS+RNNSKYY+VVVQY+AKFNAE V+SFLYSLNDGKI KKKFNLRLAPEE S +LTGY H
Sbjct: 125 CSDRNNSKYYIVVVQYTAKFNAEAVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEH 184

Query: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           N VTCIGMKTDIPVILDEAI KL+PDYFWLGGGE+DLKLGIRTSEFINFVKPFIIKCS
Sbjct: 185 NGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGEIDLKLGIRTSEFINFVKPFIIKCS 242

[Close]

BLAST of Carg25166 vs. TrEMBL
Match: tr|A0A0A0L4A0|A0A0A0L4A0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020620 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 6.5e-101
Identity = 190/239 (79.50%), Postives = 205/239 (85.77%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGA-DGDTV 60
           MGTE+ AMAE+NSMEA                 L+L  LPNLDS PS + S+GA D DTV
Sbjct: 1   MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTV 60

Query: 61  ARLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVV 120
           ARLS IL TNAVNDFSFKRVPSDYYDW LEARRDVL+AAS+DHLCKSIVLVNTQA SH+V
Sbjct: 61  ARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQAPSHIV 120

Query: 121 DCSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYV 180
           DCS+RNNSKYY+VVVQY+AKFNAET+RSFLYSLNDGKI KKKFNLRLAPEEISA+LTGY 
Sbjct: 121 DCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYE 180

Query: 181 HNAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           HN VTCIGMKTDIPVILDEAI KL+PDYFWLGGGE DLKLGIRTSEFIN+VKPFIIKCS
Sbjct: 181 HNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS 224

[Close]

BLAST of Carg25166 vs. TrEMBL
Match: tr|A0A061G599|A0A061G599_THECC (YbaK/aminoacyl-tRNA synthetase-associated domain isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_015994 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 2.1e-91
Identity = 172/226 (76.11%), Postives = 196/226 (86.73%), Query Frame = 0


Query: 13  SMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVARLSTILRTNAVN 72
           ++ ALA+LE  QT I+ RISKLEL++LP  ++EP P SS   + D  ARLS ILR+N VN
Sbjct: 4   ALAALAELERVQTQILERISKLELSHLPQ-NAEPLPSSSPLTNDDVEARLSNILRSNGVN 63

Query: 73  DFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRNNSKYYVV 132
           DF FKRV SDYYDWSLE+RRDVL AASV HLCKSIVLVNTQA S+V+DCS+RNNSKYYVV
Sbjct: 64  DFFFKRVSSDYYDWSLESRRDVLGAASVHHLCKSIVLVNTQAPSNVIDCSDRNNSKYYVV 123

Query: 133 VVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTCIGMKTDI 192
           VVQY+A+FNAETV++FLY+LN GKI KKKFNLRL PEE S +LTGY HNAVTCIGM+TDI
Sbjct: 124 VVQYTARFNAETVKNFLYALNSGKISKKKFNLRLTPEETSIKLTGYEHNAVTCIGMQTDI 183

Query: 193 PVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           PVILDEAI KLSPD+FWLGGGEVDLKLGIRTSEFI+FVKPFI+ CS
Sbjct: 184 PVILDEAIVKLSPDFFWLGGGEVDLKLGIRTSEFISFVKPFIVNCS 228

[Close]

BLAST of Carg25166 vs. TrEMBL
Match: tr|M5WAH3|M5WAH3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G072600 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 5.7e-89
Identity = 171/228 (75.00%), Postives = 191/228 (83.77%), Query Frame = 0


Query: 15  EALAKLEYRQTLIINRISKLEL---AYLPNLDSEPSPISSEG-ADGDTVARLSTILRTNA 74
           ++LA+LE  QT I+ RISK EL   A LP   S P P S++  A G T ARLS ILR N 
Sbjct: 3   KSLAELERFQTQILERISKFELASSASLPQHSSTPIPTSTQNDAIGATEARLSAILRANG 62

Query: 75  VNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRNNSKYY 134
           V DF+FKRVP+DYYDWSL+ RRDVL AASV HLCKSIVLVNTQAQS VVDCS+RNNSKYY
Sbjct: 63  VKDFAFKRVPADYYDWSLDDRRDVLGAASVHHLCKSIVLVNTQAQSSVVDCSDRNNSKYY 122

Query: 135 VVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTCIGMKT 194
           VVVVQY+A+FNAE V++FLYSLN+GKI KKKFNLRLAPEE S ELTG+ HN VTC+GMKT
Sbjct: 123 VVVVQYTARFNAEAVKNFLYSLNEGKIAKKKFNLRLAPEETSVELTGFEHNGVTCVGMKT 182

Query: 195 DIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
            IPVILDEAI KLSPD+FWLGGGE+DLKLGIRTSEFINFVKPFI+ CS
Sbjct: 183 GIPVILDEAIQKLSPDFFWLGGGEIDLKLGIRTSEFINFVKPFIVSCS 230

[Close]

BLAST of Carg25166 vs. TrEMBL
Match: tr|A0A0D2TBK3|A0A0D2TBK3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G238100 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 5.7e-89
Identity = 170/227 (74.89%), Postives = 194/227 (85.46%), Query Frame = 0


Query: 16  ALAKLEYRQTLIINRISKLELAYLPNLDSEP----SPISSEGADGDTVARLSTILRTNAV 75
           ALA+LE  Q  I+ RISKLEL++LP  ++EP    SP+++  A  D  A LS ILR+N V
Sbjct: 4   ALAELERVQLQILRRISKLELSHLPQ-NAEPIPSSSPLTNGDASSDVEACLSNILRSNGV 63

Query: 76  NDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRNNSKYYV 135
           NDF FKRV SDYYDW LE+RRDVL AASV HLCKSIVLVNTQA S+V+DCS+RNNSKYYV
Sbjct: 64  NDFIFKRVASDYYDWPLESRRDVLGAASVHHLCKSIVLVNTQALSNVIDCSDRNNSKYYV 123

Query: 136 VVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTCIGMKTD 195
           VVVQY+A+FNAETV++FLY+LN+GKI KKKFNLRLAPEE S +LTGY HNAVTCIGM+TD
Sbjct: 124 VVVQYTARFNAETVKNFLYTLNNGKISKKKFNLRLAPEETSIKLTGYEHNAVTCIGMQTD 183

Query: 196 IPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           IPVILDEAI KL PD+FWLGGGEVDLKLGIRTSEFINFVKPFI+ CS
Sbjct: 184 IPVILDEAIVKLDPDFFWLGGGEVDLKLGIRTSEFINFVKPFIVSCS 229

The following BLAST results are available for this feature:

BLAST of Carg25166 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951583.1	3.5e-130	100.00	uncharacterized protein LOC111454353 [Cucurbita moschata]	[more]
XP_023538668.1	7.2e-128	98.32	uncharacterized protein LOC111799544 [Cucurbita pepo subsp. pepo]	[more]
XP_023005520.1	1.6e-127	97.90	uncharacterized protein LOC111498483 [Cucurbita maxima]	[more]
XP_008448863.1	3.9e-113	85.71	PREDICTED: uncharacterized protein LOC103490895 [Cucumis melo]	[more]
XP_004147201.1	9.9e-101	79.50	PREDICTED: uncharacterized protein LOC101218396 [Cucumis sativus] >KGN55874.1 hy...	[more]

BLAST of Carg25166 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16510.1	2.6e-87	68.67	YbaK/aminoacyl-tRNA synthetase-associated domain	[more]

BLAST of Carg25166 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25166 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BLB4\|A0A1S3BLB4_CUCME	2.6e-113	85.71	uncharacterized protein LOC103490895 OS=Cucumis melo OX=3656 GN=LOC103490895 PE=...	[more]
tr\|A0A0A0L4A0\|A0A0A0L4A0_CUCSA	6.5e-101	79.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020620 PE=4 SV=1	[more]
tr\|A0A061G599\|A0A061G599_THECC	2.1e-91	76.11	YbaK/aminoacyl-tRNA synthetase-associated domain isoform 1 OS=Theobroma cacao OX...	[more]
tr\|M5WAH3\|M5WAH3_PRUPE	5.7e-89	75.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G072600 PE=4 SV=1	[more]
tr\|A0A0D2TBK3\|A0A0D2TBK3_GOSRA	5.7e-89	74.89	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G238100 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0002161	aminoacyl-tRNA editing activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036754	YbaK/aa-tRNA-synt-asso_dom_sf
IPR007214	YbaK/aa-tRNA-synth-assoc-dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0002161	aminoacyl-tRNA editing activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25166-RA	Carg25166-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007214	YbaK/aminoacyl-tRNA synthetase-associated domain	PFAM	PF04073	tRNA_edit	coord: 102..229 e-value: 7.7E-8 score: 32.4
IPR036754	YbaK/aminoacyl-tRNA synthetase-associated domain superfamily	GENE3D	G3DSA:3.90.960.10		coord: 56..237 e-value: 2.7E-27 score: 97.2
IPR036754	YbaK/aminoacyl-tRNA synthetase-associated domain superfamily	SUPERFAMILY	SSF55826	YbaK/ProRS associated domain	coord: 74..235
None	No IPR available	PANTHER	PTHR30411	UNCHARACTERIZED	coord: 14..238
None	No IPR available	PANTHER	PTHR30411:SF4	SUBFAMILY NOT NAMED	coord: 14..238
None	No IPR available	CDD	cd04332	YbaK_like	coord: 87..235 e-value: 5.63816E-20 score: 81.8205

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25166	Cla005650	Watermelon (97103) v1	carwmB0526
Carg25166	Csa3G020620	Cucumber (Chinese Long) v2	carcuB0559
Carg25166	MELO3C013948	Melon (DHL92) v3.5.1	carmeB0535
Carg25166	ClCG10G002780	Watermelon (Charleston Gray)	carwcgB0513
Carg25166	CSPI03G02780	Wild cucumber (PI 183967)	carcpiB0565
Carg25166	Cucsa.320840	Cucumber (Gy14) v1	carcgyB0609
Carg25166	CmaCh06G007770	Cucurbita maxima (Rimu)	carcmaB0742
Carg25166	CmoCh06G007970	Cucurbita moschata (Rifu)	carcmoB0720
Carg25166	Lsi07G013070	Bottle gourd (USVL1VR-Ls)	carlsiB482
Carg25166	Cp4.1LG08g07470	Cucurbita pepo (Zucchini)	carcpeB0750
Carg25166	CsGy3G002710	Cucumber (Gy14) v2	carcgybB0536
Carg25166	MELO3C013948.2	Melon (DHL92) v3.6.1	carmedB0540
Carg25166	CsaV3_3G002820	Cucumber (Chinese Long) v3	carcucB0567
Carg25166	Cla97C10G187330	Watermelon (97103) v2	carwmbB0555
Carg25166	Bhi11G000173	Wax gourd	carwgoB0640

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25166	Cucurbita maxima (Rimu)	carcmaB0741
Carg25166	Cucurbita moschata (Rifu)	carcmoB0719
Carg25166	Cucurbita pepo (Zucchini)	carcpeB0749