Carg24837 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24837
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Serine-rich adhesin for platelets like
Location	Cucurbita_argyrosperma_scaffold_157 : 439749 .. 441457 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAGTTGTTATATTCCAGTCTCCGTGTCTTTCCTCCCTTTCATAAGTCTCCATTGTCATCGCTTCACTTCAACAGTCATTAGGGTTTGAAAGGGAATACACACTTCAATTCACGCTCTCGCCCCATCACTCTCCGTAATCATGCTAACCGGACTTGCCAGAGGCGCGTCTATGGTCGCAGCCGAGGTCGGAGTTCTCAGACGCCGTTTTCAAAGAACTCCGCCCCTTCAATCGCCGGAACACTCCTCTACTTCATTTTCTGCTCTCACTTCCTCCTACTCGCCCCTCTCTGCCAACCCTATGGTCGCCGAGGACAACGACCTAGTCATGGAGGCCGGAGAGCCACTCCCTAGACTCGTATTTGGAGGCGTTCCTAGTTTTGAAGAAGCTAAGGAAGCCACCGCTGAGTTGAAGGAGGTCTTGGATGCGTAAGATCCGCCAAAACTCCATCTCATTCTATTGCCAATTTATTTGATTGCATACTTCATTTTCCGTTAGCCGATTTTTGTCATTTCCTCAAAACTCTGTATGCATTTTTTTTTTTTTTTTTTTTTTTAAATTTCCAGGATGTGTCTGTCGTCGCCTAAATACTTTGAATCAGATACCTCATTGATGCCGGGAATTTCTCTGTCTCTGAACAATGAGACGGTGGATAACGGATTTGGTGTGATCATGGAGAACGATGCAAGTAATCCAGGGCGTGAACATGTTCGCGAAGCATTCCGTTTGCTTTGCTGTAGCTCTAAAATCCAGGTAATTAATTTTAACGCATTAATTTTGATTAATTACCACGGCACTGAGGTTCAGTGGATCTATAATCGTTCCATTTGTTCTCCAGAACATTGTTTCAGCCGTCGCCTGTGACCAAAATGTATTCAACGCTGTGCTTGAGAATTCTGATGTCAAGGAACTCATCCAGACATACAAAACCAGTAATCAAAATGTTCATTTCTTTTGAATCCAATTTAGTTTTTTGGGGCTGAAACTATGTTATTTCTGCTGCAAAACTTGATGAAGTTAAATTTCATTAAGGTTCTGATAAGGAGGATGAAGGAGATGTTACCCAAGAGGGGGAATCAGGAGCACGCGTGGTTAAAAAGCTGAGGAATATGAAAGATTTCGTAGTTAAAATGGTGAGTAATATACCAAGTCATCTTCCAGGCTTCTTGCATGGATCTGCAGCTATGGAGATTGCTTATGGATCTTCATCTATGGAGAGTGCTTATGGATCAGATCATAAAGAAAGCATAACCATGAAGGCTCGCAAATTTGGTTTCGGCTGTGTGGAAAAGCTCAGAAACCTGAAAAATTCAGCTGTTGAAGTGGCTACTAAAATACCAAATTATCTTCCAAACTGGTATGGATCTTCAGCTGCAGGGGGTGGTTCTGGATCAGATCATGAAGGAAACGCCCAAAGTTCTACCCCTGAAATGGGTTTAGGAACGTCTCTTACGGGGTTGGCAATCATGGTTATTATGATTGTAGTGTTCAAGCGAATTTAGACTCTGTCTCCACACATTGTGCTGGAGGCAGAGTTGGGCAGGAATGTAATTGATAGTATAAGGGAGGGAGGTACTTTATCTTAGCAAATCTGTTGAACTTTTTAAAGTGATTCTCTGTGTTTGTTTGCATAGAGAGTATATGTATGTTACTATGAATAATGGGATTGCTGTTATGGAGTTTATGAAATTTGTGAAAGTTTGCTGAAC

mRNA sequence

TGAAGTTGTTATATTCCAGTCTCCGTGTCTTTCCTCCCTTTCATAAGTCTCCATTGTCATCGCTTCACTTCAACAGTCATTAGGGTTTGAAAGGGAATACACACTTCAATTCACGCTCTCGCCCCATCACTCTCCGTAATCATGCTAACCGGACTTGCCAGAGGCGCGTCTATGGTCGCAGCCGAGGTCGGAGTTCTCAGACGCCGTTTTCAAAGAACTCCGCCCCTTCAATCGCCGGAACACTCCTCTACTTCATTTTCTGCTCTCACTTCCTCCTACTCGCCCCTCTCTGCCAACCCTATGGTCGCCGAGGACAACGACCTAGTCATGGAGGCCGGAGAGCCACTCCCTAGACTCGTATTTGGAGGCGTTCCTAGTTTTGAAGAAGCTAAGGAAGCCACCGCTGAGTTGAAGGAGGTCTTGGATGCGATGTGTCTGTCGTCGCCTAAATACTTTGAATCAGATACCTCATTGATGCCGGGAATTTCTCTGTCTCTGAACAATGAGACGGTGGATAACGGATTTGGTGTGATCATGGAGAACGATGCAAGTAATCCAGGGCGTGAACATGTTCGCGAAGCATTCCGTTTGCTTTGCTGTAGCTCTAAAATCCAGAACATTGTTTCAGCCGTCGCCTGTGACCAAAATGTATTCAACGCTGTGCTTGAGAATTCTGATGTCAAGGAACTCATCCAGACATACAAAACCAGTTCTGATAAGGAGGATGAAGGAGATGTTACCCAAGAGGGGGAATCAGGAGCACGCGTGGTTAAAAAGCTGAGGAATATGAAAGATTTCGTAGTTAAAATGGTGAGTAATATACCAAGTCATCTTCCAGGCTTCTTGCATGGATCTGCAGCTATGGAGATTGCTTATGGATCTTCATCTATGGAGAGTGCTTATGGATCAGATCATAAAGAAAGCATAACCATGAAGGCTCGCAAATTTGGTTTCGGCTGTGTGGAAAAGCTCAGAAACCTGAAAAATTCAGCTGTTGAAGTGGCTACTAAAATACCAAATTATCTTCCAAACTGGTATGGATCTTCAGCTGCAGGGGGTGGTTCTGGATCAGATCATGAAGGAAACGCCCAAAGTTCTACCCCTGAAATGGGTTTAGGAACGTCTCTTACGGGGTTGGCAATCATGGTTATTATGATTGTAGTGTTCAAGCGAATTTAGACTCTGTCTCCACACATTGTGCTGGAGGCAGAGTTGGGCAGGAATGTAATTGATAGTATAAGGGAGGGAGGTACTTTATCTTAGCAAATCTGTTGAACTTTTTAAAGTGATTCTCTGTGTTTGTTTGCATAGAGAGTATATGTATGTTACTATGAATAATGGGATTGCTGTTATGGAGTTTATGAAATTTGTGAAAGTTTGCTGAAC

Coding sequence (CDS)

ATGCTAACCGGACTTGCCAGAGGCGCGTCTATGGTCGCAGCCGAGGTCGGAGTTCTCAGACGCCGTTTTCAAAGAACTCCGCCCCTTCAATCGCCGGAACACTCCTCTACTTCATTTTCTGCTCTCACTTCCTCCTACTCGCCCCTCTCTGCCAACCCTATGGTCGCCGAGGACAACGACCTAGTCATGGAGGCCGGAGAGCCACTCCCTAGACTCGTATTTGGAGGCGTTCCTAGTTTTGAAGAAGCTAAGGAAGCCACCGCTGAGTTGAAGGAGGTCTTGGATGCGATGTGTCTGTCGTCGCCTAAATACTTTGAATCAGATACCTCATTGATGCCGGGAATTTCTCTGTCTCTGAACAATGAGACGGTGGATAACGGATTTGGTGTGATCATGGAGAACGATGCAAGTAATCCAGGGCGTGAACATGTTCGCGAAGCATTCCGTTTGCTTTGCTGTAGCTCTAAAATCCAGAACATTGTTTCAGCCGTCGCCTGTGACCAAAATGTATTCAACGCTGTGCTTGAGAATTCTGATGTCAAGGAACTCATCCAGACATACAAAACCAGTTCTGATAAGGAGGATGAAGGAGATGTTACCCAAGAGGGGGAATCAGGAGCACGCGTGGTTAAAAAGCTGAGGAATATGAAAGATTTCGTAGTTAAAATGGTGAGTAATATACCAAGTCATCTTCCAGGCTTCTTGCATGGATCTGCAGCTATGGAGATTGCTTATGGATCTTCATCTATGGAGAGTGCTTATGGATCAGATCATAAAGAAAGCATAACCATGAAGGCTCGCAAATTTGGTTTCGGCTGTGTGGAAAAGCTCAGAAACCTGAAAAATTCAGCTGTTGAAGTGGCTACTAAAATACCAAATTATCTTCCAAACTGGTATGGATCTTCAGCTGCAGGGGGTGGTTCTGGATCAGATCATGAAGGAAACGCCCAAAGTTCTACCCCTGAAATGGGTTTAGGAACGTCTCTTACGGGGTTGGCAATCATGGTTATTATGATTGTAGTGTTCAAGCGAATTTAG

Protein sequence

MLTGLARGASMVAAEVGVLRRRFQRTPPLQSPEHSSTSFSALTSSYSPLSANPMVAEDNDLVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSLMPGISLSLNNETVDNGFGVIMENDASNPGREHVREAFRLLCCSSKIQNIVSAVACDQNVFNAVLENSDVKELIQTYKTSSDKEDEGDVTQEGESGARVVKKLRNMKDFVVKMVSNIPSHLPGFLHGSAAMEIAYGSSSMESAYGSDHKESITMKARKFGFGCVEKLRNLKNSAVEVATKIPNYLPNWYGSSAAGGGSGSDHEGNAQSSTPEMGLGTSLTGLAIMVIMIVVFKRI

Homology

[Close]

BLAST of Carg24837 vs. NCBI nr
Match: XP_022932165.1 (uncharacterized protein LOC111438482 [Cucurbita moschata])

HSP 1 Score: 617.1 bits (1590), Expect = 3.7e-173
Identity = 344/345 (99.71%), Postives = 344/345 (99.71%), Query Frame = 0


Query: 1   MLTGLARGASMVAAEVGVLRRRFQRTPPLQSPEHSSTSFSALTSSYSPLSANPMVAEDND 60
           MLTGLARGASMVAAEVGVLRRRFQRT PLQSPEHSSTSFSALTSSYSPLSANPMVAEDND
Sbjct: 1   MLTGLARGASMVAAEVGVLRRRFQRTLPLQSPEHSSTSFSALTSSYSPLSANPMVAEDND 60

Query: 61  LVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSLMPGISLSLN 120
           LVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSLMPGISLSLN
Sbjct: 61  LVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSLMPGISLSLN 120

Query: 121 NETVDNGFGVIMENDASNPGREHVREAFRLLCCSSKIQNIVSAVACDQNVFNAVLENSDV 180
           NETVDNGFGVIMENDASNPGREHVREAFRLLCCSSKIQNIVSAVACDQNVFNAVLENSDV
Sbjct: 121 NETVDNGFGVIMENDASNPGREHVREAFRLLCCSSKIQNIVSAVACDQNVFNAVLENSDV 180

Query: 181 KELIQTYKTSSDKEDEGDVTQEGESGARVVKKLRNMKDFVVKMVSNIPSHLPGFLHGSAA 240
           KELIQTYKTSSDKEDEGDVTQEGESGARVVKKLRNMKDFVVKMVSNIPSHLPGFLHGSAA
Sbjct: 181 KELIQTYKTSSDKEDEGDVTQEGESGARVVKKLRNMKDFVVKMVSNIPSHLPGFLHGSAA 240

Query: 241 MEIXXXXXXXXXXXXXXXXXXXTMKARKFGFGCVEKLRNLKNSAVEVATKIPNYLPNWYG 300
           MEIXXXXXXXXXXXXXXXXXXXTMKARKFGFGCVEKLRNLKNSAVEVATKIPNYLPNWYG
Sbjct: 241 MEIXXXXXXXXXXXXXXXXXXXTMKARKFGFGCVEKLRNLKNSAVEVATKIPNYLPNWYG 300

Query: 301 SSAAGGGSGSDHEGNAQSSTPEMGLGTSLTGLAIMVIMIVVFKRI 346
           SSAAGGGSGSDHEGNAQSSTPEMGLGTSLTGLAIMVIMIVVFKRI
Sbjct: 301 SSAAGGGSGSDHEGNAQSSTPEMGLGTSLTGLAIMVIMIVVFKRI 345

[Close]

BLAST of Carg24837 vs. NCBI nr
Match: XP_023520450.1 (uncharacterized protein LOC111783835 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 557.8 bits (1436), Expect = 2.7e-155
Identity = 300/348 (86.21%), Postives = 310/348 (89.08%), Query Frame = 0


Query: 1   MLTGLARGASMVAAEVGVLRRRFQRTPPLQSPEH---SSTSFSALTSSYSPLSANPMVAE 60
           MLTGLARGASMVAAEVGVLRRRFQRTPPLQSPEH   SS SFSALTSS SPLS NP+VAE
Sbjct: 1   MLTGLARGASMVAAEVGVLRRRFQRTPPLQSPEHCYASSASFSALTSSSSPLSPNPIVAE 60

Query: 61  DNDLVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSLMPGISL 120
           DNDLVMEAGEPLPRLVFGG PSFEEAKEATAELKEVLDAMCLSSPKYFESDTSL+PGI+L
Sbjct: 61  DNDLVMEAGEPLPRLVFGGAPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSLIPGIAL 120

Query: 121 SLNNETVDNGFGVIMENDASNPGREHVREAFRLLCCSSKIQNIVSAVACDQNVFNAVLEN 180
           SLNNETVDNGFGVIMENDA N GREHVREAFRLL CSSKIQNIVSAVACDQNVFNAVLEN
Sbjct: 121 SLNNETVDNGFGVIMENDARNTGREHVREAFRLLRCSSKIQNIVSAVACDQNVFNAVLEN 180

Query: 181 SDVKELIQTYKTSSDKEDEGDVTQEGESGARVVKKLRNMKDFVVKMVSNIPSHLPGFLHG 240
           SDVKELIQTYKTSS  EDEGDVTQEGESGARVVKKLRNMKDFV+KMVSNIPSHLPGFLHG
Sbjct: 181 SDVKELIQTYKTSSGTEDEGDVTQEGESGARVVKKLRNMKDFVIKMVSNIPSHLPGFLHG 240

Query: 241 SAAMEIXXXXXXXXXXXXXXXXXXXTMKARKFGFGCVEKLRNLKNSAVEVATKIPNYLPN 300
           SAAME                    TMKARKFG GCVEKLR+LKNSAVEVATKIPN++PN
Sbjct: 241 SAAME---------SADGSDHKESITMKARKFGSGCVEKLRDLKNSAVEVATKIPNFVPN 300

Query: 301 WYGSSAAGGGSGSDHEGNAQSSTPEMGLGTSLTGLAIMVIMIVVFKRI 346
           WYGSS AG GS SDH+GNAQSSTPEM LG S+TGLAI+VIMIVVFKRI
Sbjct: 301 WYGSSPAGSGSESDHKGNAQSSTPEMNLGLSITGLAIIVIMIVVFKRI 339

[Close]

BLAST of Carg24837 vs. NCBI nr
Match: XP_022985237.1 (uncharacterized protein LOC111483290 isoform X2 [Cucurbita maxima])

HSP 1 Score: 556.2 bits (1432), Expect = 7.7e-155
Identity = 317/349 (90.83%), Postives = 325/349 (93.12%), Query Frame = 0


Query: 1   MLTGLARGASMVAAEVGVLRRRFQRTPPLQSPEH---SSTSFSALT-SSYSPLSANPMVA 60
           MLTGLARGASMVAAEVGVLRRRFQRTPPLQSPEH   SSTSFSA T SS SPLSA P+VA
Sbjct: 1   MLTGLARGASMVAAEVGVLRRRFQRTPPLQSPEHCYASSTSFSARTSSSSSPLSAKPIVA 60

Query: 61  EDNDLVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSLMPGIS 120
           EDNDLVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSL+PGIS
Sbjct: 61  EDNDLVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSLIPGIS 120

Query: 121 LSLNNETVDNGFGVIMENDASNPGREHVREAFRLLCCSSKIQNIVSAVACDQNVFNAVLE 180
           LSLNNE VDNGFGVIM NDASNPGREHV EAFRLL CSSKIQNIVSAVACDQNVF AVLE
Sbjct: 121 LSLNNEMVDNGFGVIMANDASNPGREHVLEAFRLLSCSSKIQNIVSAVACDQNVFKAVLE 180

Query: 181 NSDVKELIQTYKTSSDKEDEGDVTQEGESGARVVKKLRNMKDFVVKMVSNIPSHLPGFLH 240
           NSDVKELIQTYKTSS  EDEGDVT+EGESGARVVKKLRNMKDF++KMVSNIPS LPGFLH
Sbjct: 181 NSDVKELIQTYKTSSGTEDEGDVTEEGESGARVVKKLRNMKDFLIKMVSNIPSRLPGFLH 240

Query: 241 GSAAMEIXXXXXXXXXXXXXXXXXXXTMKARKFGFGCVEKLRNLKNSAVEVATKIPNYLP 300
           G +AME  XXXXXXXXXXXXXXXXX TMKARKFG GCVEKLRNLKNSAVEVATKIPN++P
Sbjct: 241 GFSAMESAXXXXXXXXXXXXXXXXXITMKARKFGSGCVEKLRNLKNSAVEVATKIPNFVP 300

Query: 301 NWYGSSAAGGGSGSDHEGNAQSSTPEMGLGTSLTGLAIMVIMIVVFKRI 346
           NWYGSS AGG SGSDHEGNAQ  TPEMGLGTSLTGLAIMVIMIVVFKRI
Sbjct: 301 NWYGSSGAGGASGSDHEGNAQRCTPEMGLGTSLTGLAIMVIMIVVFKRI 349

[Close]

BLAST of Carg24837 vs. NCBI nr
Match: XP_022985238.1 (uncharacterized protein LOC111483290 isoform X3 [Cucurbita maxima])

HSP 1 Score: 554.7 bits (1428), Expect = 2.2e-154
Identity = 301/349 (86.25%), Postives = 309/349 (88.54%), Query Frame = 0


Query: 1   MLTGLARGASMVAAEVGVLRRRFQRTPPLQSPEH---SSTSFSALT-SSYSPLSANPMVA 60
           MLTGLARGASMVAAEVGVLRRRFQRTPPLQSPEH   SSTSFSA T SS SPLSA P+VA
Sbjct: 1   MLTGLARGASMVAAEVGVLRRRFQRTPPLQSPEHCYASSTSFSARTSSSSSPLSAKPIVA 60

Query: 61  EDNDLVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSLMPGIS 120
           EDNDLVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSL+PGIS
Sbjct: 61  EDNDLVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSLIPGIS 120

Query: 121 LSLNNETVDNGFGVIMENDASNPGREHVREAFRLLCCSSKIQNIVSAVACDQNVFNAVLE 180
           LSLNNE VDNGFGVIM NDASNPGREHV EAFRLL CSSKIQNIVSAVACDQNVF AVLE
Sbjct: 121 LSLNNEMVDNGFGVIMANDASNPGREHVLEAFRLLSCSSKIQNIVSAVACDQNVFKAVLE 180

Query: 181 NSDVKELIQTYKTSSDKEDEGDVTQEGESGARVVKKLRNMKDFVVKMVSNIPSHLPGFLH 240
           NSDVKELIQTYKTSS  EDEGDVT+EGESGARVVKKLRNMKDF++KMVSNIPS LPGFLH
Sbjct: 181 NSDVKELIQTYKTSSGTEDEGDVTEEGESGARVVKKLRNMKDFLIKMVSNIPSRLPGFLH 240

Query: 241 GSAAMEIXXXXXXXXXXXXXXXXXXXTMKARKFGFGCVEKLRNLKNSAVEVATKIPNYLP 300
           GS+AME                    TMKARKFG GCVEKLRNLKNSAVEVATKIPN++P
Sbjct: 241 GSSAME---------SAYGSDHKESITMKARKFGSGCVEKLRNLKNSAVEVATKIPNFVP 300

Query: 301 NWYGSSAAGGGSGSDHEGNAQSSTPEMGLGTSLTGLAIMVIMIVVFKRI 346
           NWYGSS AGG SGSDHEGNAQ  TPEMGLGTSLTGLAIMVIMIVVFKRI
Sbjct: 301 NWYGSSGAGGASGSDHEGNAQRCTPEMGLGTSLTGLAIMVIMIVVFKRI 340

[Close]

BLAST of Carg24837 vs. NCBI nr
Match: XP_022985236.1 (uncharacterized protein LOC111483290 isoform X1 [Cucurbita maxima])

HSP 1 Score: 540.0 bits (1390), Expect = 5.7e-150
Identity = 319/367 (86.92%), Postives = 326/367 (88.83%), Query Frame = 0


Query: 1   MLTGLARGASMVAAEVGVLRRRFQRTPPLQSPEH---SSTSFSALT-SSYSPLSANPMVA 60
           MLTGLARGASMVAAEVGVLRRRFQRTPPLQSPEH   SSTSFSA T SS SPLSA P+VA
Sbjct: 1   MLTGLARGASMVAAEVGVLRRRFQRTPPLQSPEHCYASSTSFSARTSSSSSPLSAKPIVA 60

Query: 61  EDNDLVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSLMPGIS 120
           EDNDLVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSL+PGIS
Sbjct: 61  EDNDLVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSLIPGIS 120

Query: 121 LSLNNETVDNGFGVIMENDASNPGREHVREAFRLLCCSSKIQNIVSAVACDQNVFNAVLE 180
           LSLNNE VDNGFGVIM NDASNPGREHV EAFRLL CSSKIQNIVSAVACDQNVF AVLE
Sbjct: 121 LSLNNEMVDNGFGVIMANDASNPGREHVLEAFRLLSCSSKIQNIVSAVACDQNVFKAVLE 180

Query: 181 NSDVKELIQTYKTSSDKEDEGDVTQEGESGARVVKKLRNMKDFVVKMVSNIPSHLPGFLH 240
           NSDVKELIQTYKTSS  EDEGDVT+EGESGARVVKKLRNMKDF++KMVSNIPS LPGFLH
Sbjct: 181 NSDVKELIQTYKTSSGTEDEGDVTEEGESGARVVKKLRNMKDFLIKMVSNIPSRLPGFLH 240

Query: 241 GSAAME------------------IXXXXXXXXXXXXXXXXXXXTMKARKFGFGCVEKLR 300
             AAME                   XXXXXXXXXXXXXXXXXXXTMKARKFG GCVEKLR
Sbjct: 241 --AAMESANGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMKARKFGSGCVEKLR 300

Query: 301 NLKNSAVEVATKIPNYLPNWYGSSAAGGGSGSDHEGNAQSSTPEMGLGTSLTGLAIMVIM 346
           NLKNSAVEVATKIPN++PNWYGSS AGG SGSDHEGNAQ  TPEMGLGTSLTGLAIMVIM
Sbjct: 301 NLKNSAVEVATKIPNFVPNWYGSSGAGGASGSDHEGNAQRCTPEMGLGTSLTGLAIMVIM 360

[Close]

BLAST of Carg24837 vs. TAIR10
Match: AT5G54540.1 (Uncharacterised conserved protein (UCP012943))

HSP 1 Score: 79.7 bits (195), Expect = 3.8e-15
Identity = 69/254 (27.17%), Postives = 121/254 (47.64%), Query Frame = 0


Query: 4   GLARGASMVAAEVGVLRRRFQRTPPLQSPEHSSTSFSALTSSYSPLSA------NPMVAE 63
           G A   +   A +GV +  F+      + E      +A  +S  P+SA      +P V E
Sbjct: 4   GRAMATAAKVAGIGVGKGGFKGFGFPPATEQFRVKTAAAAASSKPVSASITSAVHPSVEE 63

Query: 64  D---------NDLVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESD 123
           D         +D      EP+PR+VF   PS EEAKEAT +LKE ++ + +SSPK     
Sbjct: 64  DGMIMQRPVWDDWEFAEEEPIPRVVFSKPPSLEEAKEATEDLKEAINLVYMSSPK----S 123

Query: 124 TSLMPGISLSLNNETVDNGFGVIMENDASNPGREHVREAFRLLCCSSKIQNIVSAVACDQ 183
           ++ M G +   +   + +GF         +   +   +AF  L  ++  Q +V+++A D 
Sbjct: 124 SAAMEGSNDGGSVSKMLSGFQSSENRAVESAVPQVALQAFAFLSENTAAQTVVASIASDP 183

Query: 184 NVFNAVLENSDVKELIQTYKTSSDKEDEGDVTQEGESGA------------RVVKKLRNM 231
            V++AV+EN D+ + +QT KT+   + E D   + E  +             +++ L++M
Sbjct: 184 KVWDAVMENKDLMKFLQTNKTAVSSQVESDNDDQSERSSTTECEVVETKPMELLEILQDM 243

[Close]

BLAST of Carg24837 vs. TrEMBL
Match: tr|A0A1S3BTK0|A0A1S3BTK0_CUCME (uncharacterized protein LOC103493396 OS=Cucumis melo OX=3656 GN=LOC103493396 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 9.5e-77
Identity = 192/354 (54.24%), Postives = 233/354 (65.82%), Query Frame = 0


Query: 1   MLTGLARGASMVAAEVGVLRRRFQRTPPLQSPE----HSSTSFSALTSSYSPLSANPMVA 60
           M T   R  SM  A VGV+  RF++ PP+QS E    +S+   S LTSS S LS  P   
Sbjct: 1   MPTVATRFTSMATAGVGVITNRFRKPPPVQSSEQLLCNSTRPVSVLTSS-SSLSLKPFFT 60

Query: 61  EDNDLVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSLMPGIS 120
            + +LVMEAGEP+PRLVF  VP+ EE+KEATA+LKEVLDAM L S   F S+      IS
Sbjct: 61  YETELVMEAGEPVPRLVFDRVPNLEESKEATADLKEVLDAMYLESEPPFSSE------IS 120

Query: 121 LSLNNETVDNGFGVIMENDASNPGREHVREAFRLLCCSSKIQNIVSAVACDQNVFNAVLE 180
           L L++E V +G           PG +HV +AFRLLC S +IQN V++ A DQ V+ AVLE
Sbjct: 121 LPLHSEIVGDG-----------PGVKHVHQAFRLLCNSPEIQNAVASAAADQKVYEAVLE 180

Query: 181 NSDVKELIQTYKTSSD---KEDEGDVTQEGESGARVVKKLRNMKDFVVKMVSNIPSHLPG 240
           NS+VK+LIQ+Y+ SSD   ++DE +V QE ES A  +K  RN KDFVVKMV NI SHLPG
Sbjct: 181 NSEVKKLIQSYQISSDTNEEKDEENVIQEEESKASEMKMSRNRKDFVVKMVKNILSHLPG 240

Query: 241 FLHGSAAMEIXXXXXXXXXXXXXXXXXXXTMKARKFGFGCVEKLRNLKNSAVEVATKIPN 300
            L GS+ +E                    TMK   FG G VEKLRNLKNS VE+ TKIPN
Sbjct: 241 -LFGSSVVE---------NSSGSDSKENSTMKGGNFGSGFVEKLRNLKNSVVEMVTKIPN 300

Query: 301 YLPNWYG--SSAAGGGSGSDHEGNAQSSTPEMGLGTSLTGLAIMVIMIVVFKRI 346
           YLPN++G  SSA+   SGSDH+ N+QSS PE+ +GTSLTGLAIMVIMIVVFKR+
Sbjct: 301 YLPNFHGSSSSASESVSGSDHKENSQSSVPELDIGTSLTGLAIMVIMIVVFKRV 326

[Close]

BLAST of Carg24837 vs. TrEMBL
Match: tr|A0A0A0L7S7|A0A0A0L7S7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G094000 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 7.1e-64
Identity = 167/350 (47.71%), Postives = 209/350 (59.71%), Query Frame = 0


Query: 1   MLTGLARGASMVAAEVGVLRRRFQRTPPLQSPEHSSTSFSALTSSYSPLSANPMVAEDND 60
           M T   R  SM  A VGV+  R +++PP+QS E      S  T   S LS NP+  ++ +
Sbjct: 1   MPTVATRFTSMATAGVGVVINRLRKSPPVQSLEQ---LLSNSTRPVSALSLNPLFTDETE 60

Query: 61  LVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSLMPGISLSLN 120
           LVMEAGEP+PRLVF    + EE+KE+TA+LKE LDAM      Y ES+      ISL LN
Sbjct: 61  LVMEAGEPVPRLVFDRFINLEESKESTADLKEALDAM------YLESEFPFSSEISLPLN 120

Query: 121 NETVDNGFGVIMENDASNPGREHVREAFRLLCCSSKIQNIVSAVACDQNVFNAVLENSDV 180
           +E V N            PG +HV +AF LLC   ++QN+V++ A D  V  AV EN DV
Sbjct: 121 SEIVHN-----------RPGVKHVHQAFHLLCNFPEVQNVVASAAADLKVQEAVFENPDV 180

Query: 181 KELIQTYKTS---SDKEDEGDVTQEGESGARVVKKLRNMKDFVVKMVSNIPSHLPGFLHG 240
           K+ IQ+++TS           V+Q  ES A  +K  RN KDFVVKMV N+ SH P  L G
Sbjct: 181 KKFIQSFQTSXXXXXXXXXXXVSQVEESKASEIKMTRNPKDFVVKMVKNVLSHFP-HLFG 240

Query: 241 SAAMEIXXXXXXXXXXXXXXXXXXXTMKARKFGFGCVEKLRNLKNSAVEVATKIPNYLPN 300
           S+ +E                    TMK  KFG G V+KLRNLK+S VE+AT IPNYLPN
Sbjct: 241 SSVVE---------GSSGSDDKENSTMKGGKFGSGFVQKLRNLKSSVVEMATNIPNYLPN 300

Query: 301 WYGSSAA--GGGSGSDHEGNAQSSTPEMGLGTSLTGLAIMVIMIVVFKRI 346
           +YGSS++      GSDH+ N+QSS P MG GTS+TGLAIMVIMI VFKR+
Sbjct: 301 FYGSSSSXXXXXXGSDHKENSQSSVPGMGTGTSITGLAIMVIMIAVFKRL 320

[Close]

BLAST of Carg24837 vs. TrEMBL
Match: tr|A0A2P4LTX3|A0A2P4LTX3_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_04846 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.1e-27
Identity = 118/364 (32.42%), Postives = 181/364 (49.73%), Query Frame = 0


Query: 4   GLARGASMVAAEVGVLRRRFQRTPPL----QSPEHSSTSFSALTSSYS-------PLSAN 63
           G+ R A+ VA  VGV+    +  P +    QS  ++S   S++ S+ S       P+   
Sbjct: 5   GVMRAAAKVAG-VGVVSHGLRGMPSVPPSEQSVRNASRPVSSILSAKSASGDAAAPIQMP 64

Query: 64  PMVAEDN--------DLVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKY 123
              A D+         LVMEAGEP+PRLVFGGVPSFEEAKEAT ELK+ LD + LSSPK 
Sbjct: 65  VPAAWDDWEFADGEEALVMEAGEPMPRLVFGGVPSFEEAKEATTELKDALDKVYLSSPKS 124

Query: 124 FES----DTSLMPGISLSLNNETVDNGFGVIMENDASNPGREHVREAFRLLCCSSKIQNI 183
             S      + +PG+SL L++  ++    VI E+  +     HV +AF+LL  S + Q +
Sbjct: 125 NGSGDIFSANHVPGLSL-LSSPELETKSCVISEDTPTALVPNHVLQAFKLLNGSPEAQTV 184

Query: 184 VSAVACDQNVFNAVLENSDVKELIQTYKTSSDKEDEGDVTQEGESGARVVKKLRNMKDFV 243
           V+++A D NV+NA+++N  +K+ +Q+++ ++    E  V ++  +  +  KK      F 
Sbjct: 185 VASIASDPNVWNAMMDNHVLKDFVQSHQRNTVANLEKAVVRDEFNDVQSDKK------FE 244

Query: 244 VKMVSNIPSHLPGFLHGSAAMEIXXXXXXXXXXXXXXXXXXXTMKARKFGFGCVEKLRNL 303
              V N   +  G                                      G +  + N+
Sbjct: 245 ESSVENETGNSEG--------------------------------------GFMNIMENI 304

Query: 304 KNSAVEVATKIPNYLPNWYGSSAAGGGSGSDHEGNAQSSTPEMGLGTSLTGLAIMVIMIV 345
           K    E+ + + NYL N +G SAA   S S+  GN   +  +M +G S+ GLA++VIM+V
Sbjct: 305 KLKVQEMVSNVSNYLQNIFGHSAA--ESTSEDNGNTSKTFMDMTVGASVMGLAMLVIMVV 320

[Close]

BLAST of Carg24837 vs. TrEMBL
Match: tr|A0A2P5D2X1|A0A2P5D2X1_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_264130 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.7e-25
Identity = 76/181 (41.99%), Postives = 116/181 (64.09%), Query Frame = 0


Query: 58  DNDLVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCLSSPKYFESDTSLMPGISL 117
           +++LVM AGEPLPR+VF GVPSF EAKEAT ELK+ LD + LSSPK   S     PG+SL
Sbjct: 84  EDELVMAAGEPLPRVVFAGVPSFNEAKEATIELKDALDKVYLSSPKSSGSGELAGPGLSL 143

Query: 118 SLNNETVDNGFGVIMENDASNPGREHVREAFRLLCCSSKIQNIVSAVACDQNVFNAVLEN 177
             +N  ++    ++++   SN    H  +AF+LL  S++ QN+V+++A D NV+NAVLEN
Sbjct: 144 -FSNPDLETKSCLVVDTIRSNSVPNHALKAFKLLSTSTEAQNVVASIASDPNVWNAVLEN 203

Query: 178 SDVKELIQTYKTSSD---------KEDEGDVTQEGESGARVVKKLRNMKDFVVKMVSNIP 230
             +K+ +Q+ ++ ++          ED  D +Q+ +S    +  L+N+K  VV++VSN+ 
Sbjct: 204 PVLKDFMQSNQSIAEFQEPVFAGKFEDSSDGSQDKDSENWFMGMLQNIKLTVVELVSNLS 263

[Close]

BLAST of Carg24837 vs. TrEMBL
Match: tr|A0A2N9HJX9|A0A2N9HJX9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40394 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.8e-25
Identity = 121/366 (33.06%), Postives = 171/366 (46.72%), Query Frame = 0


Query: 4   GLARGASMVAAEVGVLRRRFQRTPPL----QSPEHSSTSFSA-LTSSYS----------P 63
           G  R A+ VA  +GV+ R  +  P +    QS  ++S   SA LTSS S          P
Sbjct: 5   GAIRAAAKVAG-IGVVNRGLRGMPAVPPAEQSVRNASRPVSAILTSSTSAPNSGSGDVAP 64

Query: 64  LSANPMVAEDND---------LVMEAGEPLPRLVFGGVPSFEEAKEATAELKEVLDAMCL 123
               P+ A  +D         LVMEAGEP+PRLVFGGVPSF+EAK+ATAELK+ LD + L
Sbjct: 65  AQQMPVPAAWDDWDFADGEEGLVMEAGEPMPRLVFGGVPSFQEAKDATAELKDALDMVYL 124

Query: 124 SSPKYFESDTSLMPGISLSLNNETVDNGFGVIMENDASNPGREHVREAFRLLCCSSKIQN 183
           SSP+   S        SLSL           ++ +    P   HV  AF LL  S + QN
Sbjct: 125 SSPESTGSVDPFAANPSLSL---VSGPALEPVISDATPTPVPRHVFHAFSLLSKSPEAQN 184

Query: 184 IVSAVACDQNVFNAVLENSDVKELIQTYKTSSDKEDEGDVTQEGESGARVVKKLRNMKDF 243
           +V+++A D NV+NAV+EN     ++Q Y  S  + DE                       
Sbjct: 185 VVASIASDPNVWNAVMEN----PVVQDYFVSLPRNDE----------------------- 244

Query: 244 VVKMVSNIPSHLPGFLHGSAAMEIXXXXXXXXXXXXXXXXXXXTMKARKFGFGCVEKLRN 303
            + + S++ S  P F   SA  +                           GF  +  ++N
Sbjct: 245 FLDVQSDVQSPQP-FEESSAESQPGNSDS---------------------GFNNI--MQN 304

Query: 304 LKNSAVEVATKIPNYLPNWYGSSAAGGGSGSDHEGNAQSSTPEMGLGTSLTGLAIMVIMI 346
           +K   +++ +   NY  N +G S+A   S SD  GN  S+  +  +G +  GLA+MV+M+
Sbjct: 305 IKVKVLKMVSNASNYFQNLFGHSSAESTS-SDANGNTSSNFTDKTIGATFMGLAVMVVMV 314

The following BLAST results are available for this feature:

BLAST of Carg24837 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932165.1	3.7e-173	99.71	uncharacterized protein LOC111438482 [Cucurbita moschata]	[more]
XP_023520450.1	2.7e-155	86.21	uncharacterized protein LOC111783835 [Cucurbita pepo subsp. pepo]	[more]
XP_022985237.1	7.7e-155	90.83	uncharacterized protein LOC111483290 isoform X2 [Cucurbita maxima]	[more]
XP_022985238.1	2.2e-154	86.25	uncharacterized protein LOC111483290 isoform X3 [Cucurbita maxima]	[more]
XP_022985236.1	5.7e-150	86.92	uncharacterized protein LOC111483290 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg24837 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G54540.1	3.8e-15	27.17	Uncharacterised conserved protein (UCP012943)	[more]

BLAST of Carg24837 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24837 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BTK0\|A0A1S3BTK0_CUCME	9.5e-77	54.24	uncharacterized protein LOC103493396 OS=Cucumis melo OX=3656 GN=LOC103493396 PE=...	[more]
tr\|A0A0A0L7S7\|A0A0A0L7S7_CUCSA	7.1e-64	47.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G094000 PE=4 SV=1	[more]
tr\|A0A2P4LTX3\|A0A2P4LTX3_QUESU	4.1e-27	32.42	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_04846 PE=4 SV=1	[more]
tr\|A0A2P5D2X1\|A0A2P5D2X1_9ROSA	1.7e-25	41.99	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_264130 PE=4 S...	[more]
tr\|A0A2N9HJX9\|A0A2N9HJX9_FAGSY	3.8e-25	33.06	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40394 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24837-RA	Carg24837-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33625:SF4	SUBFAMILY NOT NAMED	coord: 55..344
None	No IPR available	PANTHER	PTHR33625	FAMILY NOT NAMED	coord: 55..344

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24837	Cla003834	Watermelon (97103) v1	carwmB0791
Carg24837	Csa3G094000	Cucumber (Chinese Long) v2	carcuB0809
Carg24837	MELO3C016604	Melon (DHL92) v3.5.1	carmeB0790
Carg24837	ClCG10G006140	Watermelon (Charleston Gray)	carwcgB0766
Carg24837	CSPI03G05590	Wild cucumber (PI 183967)	carcpiB0828
Carg24837	CmaCh16G008340	Cucurbita maxima (Rimu)	carcmaB1099
Carg24837	CmoCh16G009280	Cucurbita moschata (Rifu)	carcmoB1069
Carg24837	Lsi05G006500	Bottle gourd (USVL1VR-Ls)	carlsiB729
Carg24837	Cp4.1LG00g00280	Cucurbita pepo (Zucchini)	carcpeB1109
Carg24837	CsGy3G005720	Cucumber (Gy14) v2	carcgybB0784
Carg24837	MELO3C016604.2	Melon (DHL92) v3.6.1	carmedB0802
Carg24837	CsaV3_3G005690	Cucumber (Chinese Long) v3	carcucB0832
Carg24837	Cla97C10G190190	Watermelon (97103) v2	carwmbB0829
Carg24837	Bhi11G000551	Wax gourd	carwgoB0927

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None