Carg24782 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24782
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Rapid ALkalinization Factor
Location	Cucurbita_argyrosperma_scaffold_212 : 90088 .. 90426 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGAAGCTCAAGCCATTCAAGCCTCAACCTCGTCCTCGGCCTTCTATATCTATTGATTTTTACTAACGTCGTCGTTGTCGTCGCAGTCGATAGCTTGATAAGCCCATGCAATGGTTCGATAGCGGAGTGCTATAAAGAAGTTGAGACGTTGATGGAGTCAGAGATAAGTCGGAGGTTTCTCGGACGACCTAAGGATTTAACCTATGAATTTTTGGATAAAAACAAAGCACCTTGTGCTAATGGTAGAGGTAAACCTTACCGTGGAAAGTGTCAGCCTCGTGAAGCTAATCCTTATGACAGAGAATGCAGCGGAACGTATAATCGATGTAAATAG

mRNA sequence

ATGGAAGGAAGCTCAAGCCATTCAAGCCTCAACCTCGTCCTCGGCCTTCTATATCTATTGATTTTTACTAACGTCGTCGTTGTCGTCGCAGTCGATAGCTTGATAAGCCCATGCAATGGTTCGATAGCGGAGTGCTATAAAGAAGTTGAGACGTTGATGGAGTCAGAGATAAGTCGGAGGTTTCTCGGACGACCTAAGGATTTAACCTATGAATTTTTGGATAAAAACAAAGCACCTTGTGCTAATGGTAGAGGTAAACCTTACCGTGGAAAGTGTCAGCCTCGTGAAGCTAATCCTTATGACAGAGAATGCAGCGGAACGTATAATCGATGTAAATAG

Coding sequence (CDS)

ATGGAAGGAAGCTCAAGCCATTCAAGCCTCAACCTCGTCCTCGGCCTTCTATATCTATTGATTTTTACTAACGTCGTCGTTGTCGTCGCAGTCGATAGCTTGATAAGCCCATGCAATGGTTCGATAGCGGAGTGCTATAAAGAAGTTGAGACGTTGATGGAGTCAGAGATAAGTCGGAGGTTTCTCGGACGACCTAAGGATTTAACCTATGAATTTTTGGATAAAAACAAAGCACCTTGTGCTAATGGTAGAGGTAAACCTTACCGTGGAAAGTGTCAGCCTCGTGAAGCTAATCCTTATGACAGAGAATGCAGCGGAACGTATAATCGATGTAAATAG

Protein sequence

MEGSSSHSSLNLVLGLLYLLIFTNVVVVVAVDSLISPCNGSIAECYKEVETLMESEISRRFLGRPKDLTYEFLDKNKAPCANGRGKPYRGKCQPREANPYDRECSGTYNRCK

Homology

[Close]

BLAST of Carg24782 vs. NCBI nr
Match: XP_022138044.1 (protein RALF-like 32 [Momordica charantia])

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 54/104 (51.92%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 12  LVLGLLYLLIFTNVVVVVAVDSLISPCNGSIAECYKEVETLMESEISRRFLGRPKD-LTY 71
           L+L LL L  F NV  V+   + ++PCNGSIAECY E E LMESEISRRFL + K  ++Y
Sbjct: 20  LILVLLCLPSFNNVFTVLG--NSMTPCNGSIAECYVEEEMLMESEISRRFLEQQKKYISY 79

Query: 72  EFLDKNKAPCANGRGKPY--RGKCQPREANPYDRECSGTYNRCK 113
           + L K++  C  G+GKPY     C P  +NPYDR C   Y RCK
Sbjct: 80  DTLKKDQPACQGGKGKPYTKSESCLPPPSNPYDRGCKPIY-RCK 120

[Close]

BLAST of Carg24782 vs. NCBI nr
Match: XP_022138261.1 (protein RALF-like 32 [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 7.3e-14
Identity = 47/88 (53.41%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 28  VVAVDSLISPCNGSIAECYKEVETLMESEISRRFLGRPKD-LTYEFLDKNKAPCANGRGK 87
           V  V S ++PCNGSI+ECY E ETL ESEISRRFL + K  ++Y+   K++  C  G+GK
Sbjct: 28  VTIVGSSMTPCNGSISECYAEEETLXESEISRRFLEQQKKYISYDARKKDQPACKGGKGK 87

Query: 88  PY--RGKCQPREANPYDRECSGTYNRCK 113
           PY     C P  +NPYDR CS  Y RCK
Sbjct: 88  PYTESESCLPPPSNPYDRGCSLIY-RCK 114

[Close]

BLAST of Carg24782 vs. NCBI nr
Match: XP_010247297.1 (PREDICTED: protein RALF-like 32 [Nelumbo nucifera])

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 52/116 (44.83%), Postives = 66/116 (56.90%), Query Frame = 0


Query: 1   MEGSSSHSSLNLVLGLLYL--LIFTNVVVVVAVDS--LISPCNGSIAECYKEVETLMESE 60
           M  SS+ SSL  +L  L L  L+++  V V A +S      CNGSIAEC +E E LMESE
Sbjct: 39  MAASSNRSSLGFILATLLLLQLLYSGCVRVSAAESSERYRQCNGSIAECSEEEEVLMESE 98

Query: 61  ISRRFLGRPKDLTYEFLDKNKAPCANGRGKPYRGKCQPREANPYDRECSGTYNRCK 113
           ISRRFL +   + Y  L  N+  C   +G  Y G C P  +NP +R CS  Y RC+
Sbjct: 99  ISRRFLAQSNSIGYGALKPNQPACGGPKGTSYSGSCLPNPSNPQNRGCSKIY-RCR 153

[Close]

BLAST of Carg24782 vs. NCBI nr
Match: XP_022138047.1 (protein RALF-like 32 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 9.0e-12
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 19  LLIFTNVVVVVAVDSLISPCNGSIAECYKEVETLMESEISRRFLGRPKD-LTYEFLDKNK 78
           LL+F    + +   S  SPCNGSIAEC  E E LMESEISRRFL + K  ++   L K++
Sbjct: 18  LLLFLLQALCLLRASFASPCNGSIAECNTEKEMLMESEISRRFLEQQKKYISIGALKKDR 77

Query: 79  APC-ANGRGKPY--RGKCQPREANPYDRECSGTYNRCK 113
             C  +GRG+PY   G C P  +NPYDR CS  Y RC+
Sbjct: 78  PACDGSGRGQPYTKSGSCVPPPSNPYDRGCSKIY-RCR 114

[Close]

BLAST of Carg24782 vs. NCBI nr
Match: OIT38140.1 (protein ralf-like 32 [Nicotiana attenuata])

HSP 1 Score: 73.9 bits (180), Expect = 3.8e-10
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 16  LLYLLIFTNVVVVVAVDSLISPCNGSIAECYKEVETLMESEISRRFL-GRPKDLTYEFLD 75
           L +  +F +++ ++   +  SPCNG+IAEC +E+E LMES+ISRRFL  R K ++   L 
Sbjct: 10  LYFFTLFLSLLFIITSVTSQSPCNGTIAECNEELEILMESDISRRFLEERKKYISPGALK 69

Query: 76  KNKAPC-ANGRGKPYRGKCQPREANPYDRECSGTYNRCK 113
           +++  C   G G+PY   C P  +NPY+R CS  Y RC+
Sbjct: 70  RDQPVCNGGGGGEPYSRSCLPPPSNPYNRGCS-KYYRCR 107

[Close]

BLAST of Carg24782 vs. TAIR10
Match: AT3G05490.1 (ralf-like 22)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-10
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 33  SLISPCNGSIAECYKEVETL-MESEISRRFLGRPKDLTYEFLDKNKAPCANGRGKPYRGK 92
           SL S C GSIAEC  E E +  +S+ISRR L + K ++Y  + +N  PC+  RG  Y   
Sbjct: 40  SLFSGCTGSIAECIAEEEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSR-RGASYYNC 99

Query: 93  CQPREANPYDRECSGTYNRCK 113
            +  +ANPY R CS T  RC+
Sbjct: 100 QRGAQANPYSRGCS-TITRCR 118

[Close]

BLAST of Carg24782 vs. TAIR10
Match: AT1G02900.1 (rapid alkalinization factor 1)

HSP 1 Score: 61.2 bits (147), Expect = 4.6e-10
Identity = 32/70 (45.71%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 36  SPCNGSIAECYKEVETLMESEISRRFLGRPKDLTYEFLDKNKAPCANGRGKPYRGKCQPR 95
           S C+GSIAEC    E  M+SEI+RR L   K ++Y+ L +N  PC+  RG  Y       
Sbjct: 45  SGCHGSIAECIGAEEEEMDSEINRRILATTKYISYQSLKRNSVPCSR-RGASYYNCQNGA 104

Query: 96  EANPYDRECS 106
           +ANPY R CS
Sbjct: 105 QANPYSRGCS 113

[Close]

BLAST of Carg24782 vs. TAIR10
Match: AT4G15800.1 (ralf-like 33)

HSP 1 Score: 57.8 bits (138), Expect = 5.1e-09
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 36  SPCNGSIAEC---YKEVETLMESEISRRFLGRPKDLTYEFLDKNKAPCANGRGKPYRGKC 95
           S CNG+IAEC     E E  M+SEI+RR L   K ++Y  L +N  PC+  RG  Y    
Sbjct: 38  SKCNGTIAECSLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSR-RGASYYNCR 97

Query: 96  QPREANPYDRECSGTYNRCK 113
           +  +ANPY R CS    RC+
Sbjct: 98  RGAQANPYSRGCS-AITRCR 115

[Close]

BLAST of Carg24782 vs. TAIR10
Match: AT3G16570.1 (rapid alkalinization factor 23)

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05
Identity = 41/138 (29.71%), Postives = 58/138 (42.03%), Query Frame = 0


Query: 1   MEGSSSHSSLNLVLGLLYLLIFTNVVVVVAVDS---------LISPCNGSIAECYKEV-- 60
           M G S +S    +  +L +L   N  V V+  S           + C G+IAEC      
Sbjct: 1   MRGLSRNSGAAAIFAILLILAVHNWSVAVSSQSTEFAGDFPPFETECRGTIAECSVSAAL 60

Query: 61  ---------------ETLMESEISRRFLGRPKDLTYEFLDKNKAPCANGRGKPYRGKCQP 113
                          E  M+SEI+RR L   + ++Y  L +N  PC+  RG  Y    + 
Sbjct: 61  GDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSR-RGASYYNCRRG 120

[Close]

BLAST of Carg24782 vs. TAIR10
Match: AT1G28270.1 (ralf-like 4)

HSP 1 Score: 43.9 bits (102), Expect = 7.6e-05
Identity = 37/102 (36.27%), Postives = 53/102 (51.96%), Query Frame = 0


Query: 14  LGLLYLLIFTNVVVVVAVDS------LISPC---NGSIAECYKEVETLMESEISRRFLGR 73
           +G+  LLIF  +++ +   S      L   C    G I E   E+E+LM+SE +RR L R
Sbjct: 1   MGVKMLLIFGLLILAMVAKSVNATYPLTKSCINGQGCIGE-DDELESLMDSETNRRQLAR 60

Query: 74  PKD-LTYEFLDKNKAPCANGRGKPYRGKCQPREANPYDRECS 106
            +  + Y+ L KN  PC+  RG+ Y    + R  NPY R CS
Sbjct: 61  GRRYIGYDALKKNNVPCSR-RGRSYYDCKKRRRNNPYRRGCS 100

[Close]

BLAST of Carg24782 vs. Swiss-Prot
Match: sp|Q9MA62|RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-09
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 33  SLISPCNGSIAECYKEVETL-MESEISRRFLGRPKDLTYEFLDKNKAPCANGRGKPYRGK 92
           SL S C GSIAEC  E E +  +S+ISRR L + K ++Y  + +N  PC+  RG  Y   
Sbjct: 40  SLFSGCTGSIAECIAEEEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSR-RGASYYNC 99

Query: 93  CQPREANPYDRECSGTYNRCK 113
            +  +ANPY R CS T  RC+
Sbjct: 100 QRGAQANPYSRGCS-TITRCR 118

[Close]

BLAST of Carg24782 vs. Swiss-Prot
Match: sp|Q9SRY3|RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.3e-09
Identity = 32/70 (45.71%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 36  SPCNGSIAECYKEVETLMESEISRRFLGRPKDLTYEFLDKNKAPCANGRGKPYRGKCQPR 95
           S C+GSIAEC    E  M+SEI+RR L   K ++Y+ L +N  PC+  RG  Y       
Sbjct: 45  SGCHGSIAECIGAEEEEMDSEINRRILATTKYISYQSLKRNSVPCSR-RGASYYNCQNGA 104

Query: 96  EANPYDRECS 106
           +ANPY R CS
Sbjct: 105 QANPYSRGCS 113

[Close]

BLAST of Carg24782 vs. Swiss-Prot
Match: sp|Q8L9P8|RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.2e-08
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 36  SPCNGSIAEC---YKEVETLMESEISRRFLGRPKDLTYEFLDKNKAPCANGRGKPYRGKC 95
           S CNG+IAEC     E E  M+SEI+RR L   K ++Y  L +N  PC+  RG  Y    
Sbjct: 38  SKCNGTIAECSLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSR-RGASYYNCR 97

Query: 96  QPREANPYDRECSGTYNRCK 113
           +  +ANPY R CS    RC+
Sbjct: 98  RGAQANPYSRGCS-AITRCR 115

[Close]

BLAST of Carg24782 vs. Swiss-Prot
Match: sp|Q9LUS7|RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.6e-04
Identity = 41/138 (29.71%), Postives = 58/138 (42.03%), Query Frame = 0


Query: 1   MEGSSSHSSLNLVLGLLYLLIFTNVVVVVAVDS---------LISPCNGSIAECYKEV-- 60
           M G S +S    +  +L +L   N  V V+  S           + C G+IAEC      
Sbjct: 1   MRGLSRNSGAAAIFAILLILAVHNWSVAVSSQSTEFAGDFPPFETECRGTIAECSVSAAL 60

Query: 61  ---------------ETLMESEISRRFLGRPKDLTYEFLDKNKAPCANGRGKPYRGKCQP 113
                          E  M+SEI+RR L   + ++Y  L +N  PC+  RG  Y    + 
Sbjct: 61  GDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSR-RGASYYNCRRG 120

[Close]

BLAST of Carg24782 vs. TrEMBL
Match: tr|A0A1U7ZHZ9|A0A1U7ZHZ9_NELNU (protein RALF-like 32 OS=Nelumbo nucifera OX=4432 GN=LOC104590362 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13
Identity = 52/116 (44.83%), Postives = 66/116 (56.90%), Query Frame = 0


Query: 1   MEGSSSHSSLNLVLGLLYL--LIFTNVVVVVAVDS--LISPCNGSIAECYKEVETLMESE 60
           M  SS+ SSL  +L  L L  L+++  V V A +S      CNGSIAEC +E E LMESE
Sbjct: 39  MAASSNRSSLGFILATLLLLQLLYSGCVRVSAAESSERYRQCNGSIAECSEEEEVLMESE 98

Query: 61  ISRRFLGRPKDLTYEFLDKNKAPCANGRGKPYRGKCQPREANPYDRECSGTYNRCK 113
           ISRRFL +   + Y  L  N+  C   +G  Y G C P  +NP +R CS  Y RC+
Sbjct: 99  ISRRFLAQSNSIGYGALKPNQPACGGPKGTSYSGSCLPNPSNPQNRGCSKIY-RCR 153

[Close]

BLAST of Carg24782 vs. TrEMBL
Match: tr|A0A2P5FCG6|A0A2P5FCG6_9ROSA (Rapid ALkalinization Factor OS=Trema orientalis OX=63057 GN=TorRG33x02_086300 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.3e-10
Identity = 46/104 (44.23%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 12  LVLGLLYLLIFTNVVVVVAVDSLISPCNGSIAECYKEVETLMESEISRRFLGRPKDLTYE 71
           L++GLLY   F++       D   +PCNGSIAEC +E E LMES+ISRRFL + K ++  
Sbjct: 11  LIIGLLY---FSSAASWTEGDDAYTPCNGSIAECDEEGEMLMESDISRRFLAQKKYISPG 70

Query: 72  FLDKNKAPC-ANGRGKPY--RGKCQPREANPYDRECSGTYNRCK 113
            L  ++  C   GRG+ Y   G C P+ +NP DR C   Y RC+
Sbjct: 71  ALKPDQPVCDGGGRGQAYSKSGNCLPQSSNPPDRGCE-KYYRCR 110

[Close]

BLAST of Carg24782 vs. TrEMBL
Match: tr|A0A1S4C7B1|A0A1S4C7B1_TOBAC (protein RALF-like 32 OS=Nicotiana tabacum OX=4097 GN=LOC107815898 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.6e-10
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 16  LLYLLIFTNVVVVVAVDSLISPCNGSIAECYKEVETLMESEISRRFL-GRPKDLTYEFLD 75
           L +  +F  ++ ++   +  SPCNG+IAEC +E+E LMES+ISRRFL  R K ++   L 
Sbjct: 10  LYFFTLFLTLLFIITSVTGQSPCNGTIAECNEELEILMESDISRRFLEERKKYISPGALK 69

Query: 76  KNKAPC-ANGRGKPYRGKCQPREANPYDRECSGTYNRCK 113
           +++  C   G G+PY   C P  +NPY+R CS  Y RC+
Sbjct: 70  RDQPVCNGGGGGEPYSRSCLPPPSNPYNRGCS-KYYRCR 107

[Close]

BLAST of Carg24782 vs. TrEMBL
Match: tr|A0A1U7WNT9|A0A1U7WNT9_NICSY (protein RALF-like 32 isoform X1 OS=Nicotiana sylvestris OX=4096 GN=LOC104226143 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.6e-10
Identity = 44/100 (44.00%), Postives = 64/100 (64.00%), Query Frame = 0


Query: 16  LLYLL-IFTNVVVVVAVDSLISPCNGSIAECYKEVETLMESEISRRFL-GRPKDLTYEFL 75
           L+Y+  IF  ++ ++   +  SPCNG+IAEC +E+E LMES+ISRRFL  R K ++   L
Sbjct: 9   LIYIFSIFLTLLFIITSVTGQSPCNGTIAECNEELEILMESDISRRFLEERKKYISPGAL 68

Query: 76  DKNKAPC-ANGRGKPYRGKCQPREANPYDRECSGTYNRCK 113
            +++  C   G G+PY   C P  +NPY+R CS  Y RC+
Sbjct: 69  KRDQPVCNGGGGGEPYSRSCLPPPSNPYNRGCS-KYYRCR 107

[Close]

BLAST of Carg24782 vs. TrEMBL
Match: tr|A0A2H3ZG13|A0A2H3ZG13_PHODC (rapid alkalinization factor-like OS=Phoenix dactylifera OX=42345 GN=LOC103723956 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.8e-09
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 16  LLYLLIFTNVVVVVAVDSLISPCNGSIAECYKEVETLMESEISRRFLGRPKDLTYEFLDK 75
           L  +L+F   +  +   + I+PCNGSIAEC    E L++SE  RRFL + +DL Y  ++ 
Sbjct: 11  LSVVLLFGGFLFSIIHGAEITPCNGSIAECQAAEEFLLDSETHRRFLQQGRDLDYGAMNP 70

Query: 76  NKAPCANGRGKPYRGKC-QPREANPYDRECSGTYNRCK 113
           ++  C  G+GKPY G C  PR  N   R C+  Y+ C+
Sbjct: 71  DRPACNPGKGKPYVGNCVPPRSGNKPSRGCN-AYDHCR 107

The following BLAST results are available for this feature:

BLAST of Carg24782 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138044.1	1.1e-14	51.92	protein RALF-like 32 [Momordica charantia]	[more]
XP_022138261.1	7.3e-14	53.41	protein RALF-like 32 [Momordica charantia]	[more]
XP_010247297.1	1.6e-13	44.83	PREDICTED: protein RALF-like 32 [Nelumbo nucifera]	[more]
XP_022138047.1	9.0e-12	50.00	protein RALF-like 32 [Momordica charantia]	[more]
OIT38140.1	3.8e-10	42.42	protein ralf-like 32 [Nicotiana attenuata]	[more]

BLAST of Carg24782 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05490.1	1.6e-10	44.44	ralf-like 22	[more]
AT1G02900.1	4.6e-10	45.71	rapid alkalinization factor 1	[more]
AT4G15800.1	5.1e-09	43.75	ralf-like 33	[more]
AT3G16570.1	2.0e-05	29.71	rapid alkalinization factor 23	[more]
AT1G28270.1	7.6e-05	36.27	ralf-like 4	[more]

BLAST of Carg24782 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9MA62\|RLF22_ARATH	2.8e-09	44.44	Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1	[more]
sp\|Q9SRY3\|RLF1_ARATH	8.3e-09	45.71	Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1	[more]
sp\|Q8L9P8\|RLF33_ARATH	9.2e-08	43.75	Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1	[more]
sp\|Q9LUS7\|RLF23_ARATH	3.6e-04	29.71	Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV...	[more]

BLAST of Carg24782 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1U7ZHZ9\|A0A1U7ZHZ9_NELNU	1.1e-13	44.83	protein RALF-like 32 OS=Nelumbo nucifera OX=4432 GN=LOC104590362 PE=4 SV=1	[more]
tr\|A0A2P5FCG6\|A0A2P5FCG6_9ROSA	3.3e-10	44.23	Rapid ALkalinization Factor OS=Trema orientalis OX=63057 GN=TorRG33x02_086300 PE...	[more]
tr\|A0A1S4C7B1\|A0A1S4C7B1_TOBAC	5.6e-10	42.42	protein RALF-like 32 OS=Nicotiana tabacum OX=4097 GN=LOC107815898 PE=4 SV=1	[more]
tr\|A0A1U7WNT9\|A0A1U7WNT9_NICSY	5.6e-10	44.00	protein RALF-like 32 isoform X1 OS=Nicotiana sylvestris OX=4096 GN=LOC104226143 ...	[more]
tr\|A0A2H3ZG13\|A0A2H3ZG13_PHODC	2.8e-09	39.80	rapid alkalinization factor-like OS=Phoenix dactylifera OX=42345 GN=LOC103723956...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24782-RA	Carg24782-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 50..112 e-value: 1.9E-14 score: 54.2
None	No IPR available	PANTHER	PTHR33136:SF3	PROTEIN RALF-LIKE 32	coord: 8..111
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 8..111

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24782	Cla021855	Watermelon (97103) v1	carwmB1043

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24782	Wax gourd	carwgoB1220
Carg24782	Silver-seed gourd	carcarB579
Carg24782	Cucumber (Gy14) v2	carcgybB1023
Carg24782	Cucumber (Gy14) v1	carcgyB1157
Carg24782	Cucurbita maxima (Rimu)	carcmaB1439
Carg24782	Cucurbita moschata (Rifu)	carcmoB1393
Carg24782	Cucurbita moschata (Rifu)	carcmoB1394
Carg24782	Cucurbita pepo (Zucchini)	carcpeB1446
Carg24782	Cucurbita pepo (Zucchini)	carcpeB1447
Carg24782	Wild cucumber (PI 183967)	carcpiB1076
Carg24782	Cucumber (Chinese Long) v2	carcuB1054
Carg24782	Cucumber (Chinese Long) v3	carcucB1087
Carg24782	Bottle gourd (USVL1VR-Ls)	carlsiB951
Carg24782	Melon (DHL92) v3.5.1	carmeB1008
Carg24782	Melon (DHL92) v3.6.1	carmedB1020
Carg24782	Watermelon (Charleston Gray)	carwcgB1014
Carg24782	Watermelon (97103) v2	carwmbB1100