Carg24776 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24776
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	nipped-B-like protein B isoform X2
Location	Cucurbita_argyrosperma_scaffold_305 : 157286 .. 157827 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCGCAGGCAATGCCGATTGACTCGGTTGATATCTGCACTCTACCGTATGTTGTTCCATATTGATTAAACGTCCAAATTGAAGTGACTAACGTGATTGATAATGCTCCTTGCTCGATATCGACACACAAATTCGCTACTGGTTTGGTGGGCTGGCTGCTGCATAGCAGCAATGCTTCCAAATTGAAGAAGCTGAAGTCACACGGGTTCGAGATGGAAACAACGACGCCGTATGTATGGGCTGAGGCAATGCCGATTGACTCGGTTGATATCTGCACTCTACCATATGTTGTTCCATATTGATTAAACGCCCAAATTGAAGTGACTGACGTGATTGATAATGCTCCTTGCTCGATATCGACACACAAATTCGCTACTGGTTTGGCGGGCTGGCTGCTGCATAGCAGCAATGCTTCCAAATTGAAGAAACTGAAGGCACACGGGTTCGAGATGGAAACGACGACGCTGTATGTATGGGCAGAGGCAACGCTGATTGACTCGGTTGCTATCTGCGCTCTACCGTACGTTGTTCCATATTGA

mRNA sequence

ATGAGGCGCAGGCAATGCCGATTGACTCGGTTGATATCTGCACTCTACCTGACTAACGTGATTGATAATGCTCCTTGCTCGATATCGACACACAAATTCGCTACTGGTTTGGTGGGCTGGCTGCTGCATAGCAGCAATGCTTCCAAATTGAAGAAGCTGAAGTCACACGGGTTCGAGATGGAAACAACGACGCCGTATGTATGGGCTGAGGCAATGCCGATTGACTCGGTTGATATCTGCACTCTACCATATAAACTGAAGGCACACGGGTTCGAGATGGAAACGACGACGCTGTATGTATGGGCAGAGGCAACGCTGATTGACTCGGTTGCTATCTGCGCTCTACCGTACGTTGTTCCATATTGA

Coding sequence (CDS)

ATGAGGCGCAGGCAATGCCGATTGACTCGGTTGATATCTGCACTCTACCTGACTAACGTGATTGATAATGCTCCTTGCTCGATATCGACACACAAATTCGCTACTGGTTTGGTGGGCTGGCTGCTGCATAGCAGCAATGCTTCCAAATTGAAGAAGCTGAAGTCACACGGGTTCGAGATGGAAACAACGACGCCGTATGTATGGGCTGAGGCAATGCCGATTGACTCGGTTGATATCTGCACTCTACCATATAAACTGAAGGCACACGGGTTCGAGATGGAAACGACGACGCTGTATGTATGGGCAGAGGCAACGCTGATTGACTCGGTTGCTATCTGCGCTCTACCGTACGTTGTTCCATATTGA

Protein sequence

MRRRQCRLTRLISALYLTNVIDNAPCSISTHKFATGLVGWLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPYKLKAHGFEMETTTLYVWAEATLIDSVAICALPYVVPY

Homology

[Close]

BLAST of Carg24776 vs. NCBI nr
Match: XP_023528645.1 (DEAD-box ATP-dependent RNA helicase 42-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.2 bits (230), Expect = 6.5e-16
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 40  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLP 84
           WLLHSSNASKLKKLK+HGFEMETTTPYVWAEAMPIDSVDIC LP
Sbjct: 382 WLLHSSNASKLKKLKAHGFEMETTTPYVWAEAMPIDSVDICALP 425

[Close]

BLAST of Carg24776 vs. NCBI nr
Match: XP_023528644.1 (zinc finger CCCH domain-containing protein 13-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.2 bits (230), Expect = 6.5e-16
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 40  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLP 84
           WLLHSSNASKLKKLK+HGFEMETTTPYVWAEAMPIDSVDIC LP
Sbjct: 429 WLLHSSNASKLKKLKAHGFEMETTTPYVWAEAMPIDSVDICALP 472

[Close]

BLAST of Carg24776 vs. NCBI nr
Match: XP_022980297.1 (eukaryotic translation initiation factor 5B-like [Cucurbita maxima])

HSP 1 Score: 90.1 bits (222), Expect = 5.5e-15
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 40  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLP 84
           WLLHSSNASKLKKLK+HGFEM+T+TPYVWAEAMPIDSVDIC LP
Sbjct: 380 WLLHSSNASKLKKLKAHGFEMKTSTPYVWAEAMPIDSVDICALP 423

[Close]

BLAST of Carg24776 vs. NCBI nr
Match: XP_022924731.1 (pre-mRNA-splicing factor 38B-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 89.4 bits (220), Expect = 9.4e-15
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 40  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLP 84
           WLLHSSNASKLKKLK+HGFEMETTT YVWAEAMPIDSVDIC LP
Sbjct: 380 WLLHSSNASKLKKLKAHGFEMETTTLYVWAEAMPIDSVDICALP 423

[Close]

BLAST of Carg24776 vs. NCBI nr
Match: XP_022924733.1 (pre-mRNA-splicing factor 38B-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 40  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLP 84
           WLLHSSNASKLKKLK+HGFEMETTT YVWAEAM IDSV IC LP
Sbjct: 380 WLLHSSNASKLKKLKAHGFEMETTTLYVWAEAMLIDSVAICALP 423

[Close]

BLAST of Carg24776 vs. TrEMBL
Match: tr|A0A1S3AVS9|A0A1S3AVS9_CUCME (nipped-B-like protein B isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483464 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 42  LHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLP 84
           L+SS+ASKLKKL +H FEMETTTPYVWAEAM IDS+DIC LP
Sbjct: 404 LYSSSASKLKKLNAHRFEMETTTPYVWAEAMQIDSIDICALP 445

[Close]

BLAST of Carg24776 vs. TrEMBL
Match: tr|A0A1S3AW77|A0A1S3AW77_CUCME (nipped-B-like protein B isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483464 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 42  LHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLP 84
           L+SS+ASKLKKL +H FEMETTTPYVWAEAM IDS+DIC LP
Sbjct: 402 LYSSSASKLKKLNAHRFEMETTTPYVWAEAMQIDSIDICALP 443

[Close]

BLAST of Carg24776 vs. TrEMBL
Match: tr|A0A0A0L7W2|A0A0A0L7W2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129690 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-10
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 42  LHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLP 84
           L+SS+ASKLKKL +H +EMETTTPYVWAEAM IDS+DIC LP
Sbjct: 399 LYSSSASKLKKLNAHRYEMETTTPYVWAEAMQIDSIDICALP 440

The following BLAST results are available for this feature:

BLAST of Carg24776 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528645.1	6.5e-16	95.45	DEAD-box ATP-dependent RNA helicase 42-like isoform X2 [Cucurbita pepo subsp. pe...	[more]
XP_023528644.1	6.5e-16	95.45	zinc finger CCCH domain-containing protein 13-like isoform X1 [Cucurbita pepo su...	[more]
XP_022980297.1	5.5e-15	90.91	eukaryotic translation initiation factor 5B-like [Cucurbita maxima]	[more]
XP_022924731.1	9.4e-15	93.18	pre-mRNA-splicing factor 38B-like isoform X1 [Cucurbita moschata]	[more]
XP_022924733.1	1.1e-12	88.64	pre-mRNA-splicing factor 38B-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg24776 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg24776 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24776 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AVS9\|A0A1S3AVS9_CUCME	1.6e-10	80.95	nipped-B-like protein B isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483464 PE=4 ...	[more]
tr\|A0A1S3AW77\|A0A1S3AW77_CUCME	1.6e-10	80.95	nipped-B-like protein B isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483464 PE=4 ...	[more]
tr\|A0A0A0L7W2\|A0A0A0L7W2_CUCSA	3.5e-10	78.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129690 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24776-RA	Carg24776-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24776	Cla021400	Watermelon (97103) v1	carwmB0164
Carg24776	Csa3G129690	Cucumber (Chinese Long) v2	carcuB0193
Carg24776	MELO3C006294	Melon (DHL92) v3.5.1	carmeB0179
Carg24776	ClCG05G003130	Watermelon (Charleston Gray)	carwcgB0166
Carg24776	CSPI03G10640	Wild cucumber (PI 183967)	carcpiB0200
Carg24776	Cucsa.256650	Cucumber (Gy14) v1	carcgyB0213
Carg24776	CmaCh14G019080	Cucurbita maxima (Rimu)	carcmaB0234
Carg24776	CmoCh14G019630	Cucurbita moschata (Rifu)	carcmoB0243
Carg24776	Lsi05G018610	Bottle gourd (USVL1VR-Ls)	carlsiB156
Carg24776	Cp4.1LG03g17750	Cucurbita pepo (Zucchini)	carcpeB0250
Carg24776	CsGy3G010690	Cucumber (Gy14) v2	carcgybB0187
Carg24776	MELO3C006294.2	Melon (DHL92) v3.6.1	carmedB0183
Carg24776	CsaV3_3G010750	Cucumber (Chinese Long) v3	carcucB0200
Carg24776	Cla97C05G083760	Watermelon (97103) v2	carwmbB0179
Carg24776	Bhi01G000144	Wax gourd	carwgoB0224

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None