Carg24710 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24710
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ATP-dependent RNA helicase
Location	Cucurbita_argyrosperma_scaffold_270 : 104614 .. 109318 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTACTCGGGAGTCCGGTAGTACTAAAGCCCCTTTCACTCTGCGATATTCTCCTTAAACCCTAGCCAGTTCCATTACCCATCATTTCTCTCTTCACTTCTTCCACGAACTCTTTGAGCAGCTCTGTTAGTGTAATTCGTGCTCAAAGACGATGATGAGTTCAGTTCTTCTACGGAGATCCGCTGCCTTAGCGGCCTCCAGAGGTAGAGTTAGTTCTACCTTCTTAGCCCCAATCGCGAACTTTTTAACGTCTTCTGTGGATGTTAATGGCGGTGTTGTACCTGCTGCTGAGTTCGGACGTTTCTCCACTACTGGGGTGACGGAGAGAGCTTTGGGTTTTGGTTTTCAATCGATGGGATTTCACTCGGCTTCTGGGCCGTTGGGTTTTAAGTCGTCGTTGGTTTCCCGGGCGGAGTTTGCGGTGGAGGAATACGATGATGCTAGCAGTAGTAAAAGCGGTGATGACGGACTCGAGATTGGCAGTCTCGGGATCGCGCCGGAGATTGTTTCTGCTTTGGCGAAAAAGGGTATAACGAAGCTCTTCCCTATTCAGGTACTGTTTTTTTTTTCTCTCATTTATTTTATGATTACCAGTTTTTGCTGTTGGGGTTGAACAACATGGGCGAGTCGTGGAGAAATTTTTGAAAATTAGTTTCGACGATTTTGATCGCTTCTTCAAACTACTGCTTGTTTATATCCGCCCTAACTCACCCCAGCTTGGACGTTGAATTTCGGCGATGGAGTTACGGTTATATTTTTTAGGAACCAATTTCATTTGTTTTGAGAGCTAGAGGCCATGTTCCTTATTTCGACACCTTTTGGCCGTACGTGTGGTACCTGTATTGCGGAATGTGCCTATCGTTCATATTCCTCAGTCGAATAATGCATATGTTTTGATTTCGGCTTATAATAGTTCCGTTTGGGTTGTTTCGAGATTCGTGTTTCATTTTCTATTGGGGTTTAAAAGTATGCTGTTTCTCAATCTTTTTCAGAGAGCCGTGCTAGAACCAGCCATGCAAGGCCGTGACATGATTGGTCGTGCTAGAACTGGAACAGGAAAAACTCTTGCTTTTGGAATACCCATCTTGGATAAAATCATTCAGTTCAATGCGAAACACGGGTTTGTGTTACAATCTTGGTCATTTTTCTTCCAATTAGCTTAGTTTCTGTTTAATTCGTTATCTGGGAAGGGTTTGAATGGGTATTCTTTTAATTTTAAAAAATCATAATTCGTTAGAAATTTTGCAGAAGAGGAAGGTACCCGTTGGCCCTGGTTCTAGCTCCAACAAGGGAACTTGCTCGGCAGGTTGAAAAAGAGTTTCAAGAGGCTGCACCTAATTTGGACACAATATGTGTTTATGGAGGGGCACCAATTTCACGCCAAATGAGGCAGCTTGACTATGGCGTTGACATAGCTGTTGGCACACCTGGTCGCTTGATTGATCTTCTCAATAGGGGTTCGCTTAATTTATCAGAAGTCCAGTTTGTTGTTCTCGATGAAGCAGATCAGATGCTTCAAGTAGGCTTTCAAGAGGATGTTGAGAAGATCTTGGAGAGGTTGCCTCAGAAACGTCAGACTATGATGTTCTCTGCAACAATGCCATCTTGGATCAGAAAACTCACTCAAAATTACCTAACCAATCCATTAACTATTGATCTTGTGAGTTGTTGGCTACTTAATATCTTTTCTACTTCTTGGAATCTAATAATATCAACTGAAGCGTTTTTCTAAAAAATTATATCACTGATAACACAACCATCAAATTAGTGGACTCAGAAACTGAAGGTGCACATGATATTTTAAATAATTGAAACTCTTGCTAATCAAAATCACTATTCAATTGTCTCATGAAGTTCGGTTGGAGGATTGGAAGTTTGACAAAACTTATCAATATTTCAGGTTGGAGATTCTGATCAGAAATTGGCAGATGGAATTAGCCTATTTTCAATTGTTTCAGATATGCGTGGAAAAGCATCAATAATTGGACCTCTGATAACAGTATGGTTGCATAGCTTCTGTTTTCCCCCCTTTGATTTCTGCAAAGTCATATTTTACCTGGTTCTATCATTTCATGTTGCTTGTTGAATGCTTGCTTTCATCATGCTGTTGCCAATGATTATCTGCTTTGTAGGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACGAAACGTGATGCTGATAGATTAGCCTATGCAATGGCAAGGAACTTCAGATGTGAAGCTTTGCATGGAGATATTTCACAGTCTCAGAGAGAAAGAACTCTTTCTGGTTTTAGAGACGGACATTTCAACGTTTTAGTTGCAACTGATGTTGCAGCAAGGGGTCTTGATATACCCAATGTTGATCTTGTAAGTGATAATCTTCCTCTATATTTTTTCATCTTTTATCTTGTTTTATAGCACATAGTCTCTGGTTGCATGGTGAACCATTAAATTTTTTCTTGTCAATAATATACCTTACTCTTAACTTTGAAAACAAACTAGGGCAGTGTAATAGTAGTACCAGACTCTATCATCTCTCTTCCTCTTGTGCTGTTGGGAGCCTAGGAGGAAGTGGTTTGAAGGGTGAGGGAGTCTTTCGTCTGTATAGCCATTAAGATCCCATGGATTCTTTCTGACCTTGATTTTTTATTAGGTAATACATTTTGAGCTTCCAAACAACACAGAGATATTTGTCCATAGATCAGGACGTACAGGTCGTGCTGGCAAGAAAGGTAGTGCTATTCTTATTTACTCACAGGATCAGTCAAGGGCTGTCAGGATGATTGAGCGTGAAGTAGGCTGCAGATTTAATGAGGTTAGGATCTCTCTTCAGCATCAAACAATTTGCAACTTGGATTTTTTTTTTTAATACAAAAGTGGAACTTCCATCATTGTTTCTATATTTTAATCGTGAGAAACATTGAACTCAGCATTGAGGGTAAGGAGAAGGCTTATGCACATTTATTGTTTGCTTGCCGTAAGTTTCTGTTTCCAGGAACAGTTAGTAAATAGATGCCATGGGTACTGGTTCATGCATTGTTTAGAAGTTGATGATTCATATTTCAAGCCTAAGCTGATCTCATTTGCAAAAAAACCAAGCCTATCGCGTTCTCATATGCTAGATTTTATCCCTGAATTACTGGTTCTCGCATGATAAGCAATCAACACCAAAAAACTGAGTGTATTCTGAAGGGTGGATTGCCATGTGCGTTTTGGTTTTCTGAAATTCTTTTACCTTTAATTAAAGATTTGTTTTGTATATGAAATAACTGCCCGGTAATCTGCGTAGCTGATAAAATCAAGCATACCAATCGCTGTAGGGTGCTGTAATTAGAGCAATCGACTTCTCTAGTATCCTCCGATCTCAGAAATTTACGAGTTAATATTAGTCCACCTTGGAGTATATTACTACTTGATGTAAAGTTGACACTGATTGCTTTGTTCTTGATTATCAGCTTCCGAAGATCTCTGTTGAGAGTGGTGCTCATGTCGATATGTTCAGTGGTGGTGGTCAATTTAGTTCTTTTGGAGGAGGAGGATTCAGGGATCGTCGAATGAATGATTCAGGCCGTTTTGGTGGTCAAAGAGGTCCAAGTTTTGGTCGTTCGGCAGGTTATGAAAATTCAGGTTTTAGACGTTCCGGTGGCAGGGATTCTTTTGGGCAAGGGGGCAGAAATAGTGAACCTAGCTCTGGCGGTTTCAGTTCATTTGGGTCTCGTAGCTCTGGATCTGCATTTGGTGGATCTAGCTCGAACAATGCAGGATCTTTTGGTAGTTTTGGTTCTGGTCGTTCTGGTGGGTTTGGAGACTTCGGCAGTTCTAGTCGATCCGGTGGCTTCGGGGATTTCGGTGGTTCAGGTCGTAGTTCAGGATTTGGTGACAGAAATTCCAAAAACTCTGGCTTATTTGGTGACATGGATGCGGATCAGAGAACTGGGAAAAGACAGTTCTGAACTAAATTGGTGAGTGCCGATGTTTATAACGGTCGTTTCCAGTTTTTCGATCTGAAGAAGGTGACAATTATGTCGAGGATGAAGATTATTTCAAATGTTCAGTTTAGATTCTCTGATTTTGCTAGCTTTCATTTCAGGGTCTAACAGAATAGGTTTTGATATCCCTCTGCTTTCGTGCAGGGAATCACAACAACATCACGGGGAAATAATATTGCCATGGATTAATGACAGAATTCTTTTGAAGCAAGATTATACGAGGGGATTTTGAGGTAGGGCCCTGAACATGTTCATCGTTTCTTATATTTTCTATTACGCATTGAAATCTTTATGTAGTTGATACAAGACAAATGTTGTAGCCACTTTGAAGGAAAACTAACCTCAATATTTGGGATCAGTTCCTATGGTCTTATGTATAAATCGTTTTTGATATGCCATAGTAGTTATGTTCTATTATATCTCCTCTTTCTTAAACCATGTATCTCCATTCTTGTTCATTGGGATAGTTTATGGCTTATAATCGACTGCTTTTTCTGAAGTATCTACGAGATACGAGCTAAAATGGGTAAATTTCTAGACTGAATTATTTGAAAGGAACGAAGAAATTTGGATGTCGGAAGTGGTGTGTGATGTCCCACATTGGTTGGGAAGGAGAACAAATCACCCTGTATAAGGGTGTGGAAACCTTCCCCTAGTAGATACGTTTTAAAGCCTCGAGGGGAAAGCTCGAAAGGGAAAGTTCAAATTGTTTCTGGTAGATTGAGA

mRNA sequence

ATTTACTCGGGAGTCCGGTAGTACTAAAGCCCCTTTCACTCTGCGATATTCTCCTTAAACCCTAGCCAGTTCCATTACCCATCATTTCTCTCTTCACTTCTTCCACGAACTCTTTGAGCAGCTCTGTTAGTGTAATTCGTGCTCAAAGACGATGATGAGTTCAGTTCTTCTACGGAGATCCGCTGCCTTAGCGGCCTCCAGAGGTAGAGTTAGTTCTACCTTCTTAGCCCCAATCGCGAACTTTTTAACGTCTTCTGTGGATGTTAATGGCGGTGTTGTACCTGCTGCTGAGTTCGGACGTTTCTCCACTACTGGGGTGACGGAGAGAGCTTTGGGTTTTGGTTTTCAATCGATGGGATTTCACTCGGCTTCTGGGCCGTTGGGTTTTAAGTCGTCGTTGGTTTCCCGGGCGGAGTTTGCGGTGGAGGAATACGATGATGCTAGCAGTAGTAAAAGCGGTGATGACGGACTCGAGATTGGCAGTCTCGGGATCGCGCCGGAGATTGTTTCTGCTTTGGCGAAAAAGGGTATAACGAAGCTCTTCCCTATTCAGAGAGCCGTGCTAGAACCAGCCATGCAAGGCCGTGACATGATTGGTCGTGCTAGAACTGGAACAGGAAAAACTCTTGCTTTTGGAATACCCATCTTGGATAAAATCATTCAGTTCAATGCGAAACACGGAAGAGGAAGGTACCCGTTGGCCCTGGTTCTAGCTCCAACAAGGGAACTTGCTCGGCAGGTTGAAAAAGAGTTTCAAGAGGCTGCACCTAATTTGGACACAATATGTGTTTATGGAGGGGCACCAATTTCACGCCAAATGAGGCAGCTTGACTATGGCGTTGACATAGCTGTTGGCACACCTGGTCGCTTGATTGATCTTCTCAATAGGGGTTCGCTTAATTTATCAGAAGTCCAGTTTGTTGTTCTCGATGAAGCAGATCAGATGCTTCAAGTAGGCTTTCAAGAGGATGTTGAGAAGATCTTGGAGAGGTTGCCTCAGAAACGTCAGACTATGATGTTCTCTGCAACAATGCCATCTTGGATCAGAAAACTCACTCAAAATTACCTAACCAATCCATTAACTATTGATCTTGTTGGAGATTCTGATCAGAAATTGGCAGATGGAATTAGCCTATTTTCAATTGTTTCAGATATGCGTGGAAAAGCATCAATAATTGGACCTCTGATAACAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACGAAACGTGATGCTGATAGATTAGCCTATGCAATGGCAAGGAACTTCAGATGTGAAGCTTTGCATGGAGATATTTCACAGTCTCAGAGAGAAAGAACTCTTTCTGGTTTTAGAGACGGACATTTCAACGTTTTAGTTGCAACTGATGTTGCAGCAAGGGGTCTTGATATACCCAATGTTGATCTTGTAATACATTTTGAGCTTCCAAACAACACAGAGATATTTGTCCATAGATCAGGACGTACAGGTCGTGCTGGCAAGAAAGGTAGTGCTATTCTTATTTACTCACAGGATCAGTCAAGGGCTGTCAGGATGATTGAGCGTGAAGTAGGCTGCAGATTTAATGAGCTTCCGAAGATCTCTGTTGAGAGTGGTGCTCATGTCGATATGTTCAGTGGTGGTGGTCAATTTAGTTCTTTTGGAGGAGGAGGATTCAGGGATCGTCGAATGAATGATTCAGGCCGTTTTGGTGGTCAAAGAGGTCCAAGTTTTGGTCGTTCGGCAGGTTATGAAAATTCAGGTTTTAGACGTTCCGGTGGCAGGGATTCTTTTGGGCAAGGGGGCAGAAATAGTGAACCTAGCTCTGGCGGTTTCAGTTCATTTGGGTCTCGTAGCTCTGGATCTGCATTTGGTGGATCTAGCTCGAACAATGCAGGATCTTTTGGTAGTTTTGGTTCTGGTCGTTCTGGTGGGTTTGGAGACTTCGGCAGTTCTAGTCGATCCGGTGGCTTCGGGGATTTCGGTGGTTCAGGTCGTAGTTCAGGATTTGGTGACAGAAATTCCAAAAACTCTGGCTTATTTGGTGACATGGATGCGGATCAGAGAACTGGGAAAAGACAGTTCTGAACTAAATTGGGAATCACAACAACATCACGGGGAAATAATATTGCCATGGATTAATGACAGAATTCTTTTGAAGCAAGATTATACGAGGGGATTTTGAGGTAGGGCCCTGAACATGTTCATCGTTTCTTATATTTTCTATTACGCATTGAAATCTTTATGTAGTTGATACAAGACAAATGTTGTAGCCACTTTGAAGGAAAACTAACCTCAATATTTGGGATCAGTTCCTATGGTCTTATGTATAAATCGTTTTTGATATGCCATAGTAGTTATGTTCTATTATATCTCCTCTTTCTTAAACCATGTATCTCCATTCTTGTTCATTGGGATAGTTTATGGCTTATAATCGACTGCTTTTTCTGAAGTATCTACGAGATACGAGCTAAAATGGGTAAATTTCTAGACTGAATTATTTGAAAGGAACGAAGAAATTTGGATGTCGGAAGTGGTGTGTGATGTCCCACATTGGTTGGGAAGGAGAACAAATCACCCTGTATAAGGGTGTGGAAACCTTCCCCTAGTAGATACGTTTTAAAGCCTCGAGGGGAAAGCTCGAAAGGGAAAGTTCAAATTGTTTCTGGTAGATTGAGA

Coding sequence (CDS)

ATGATGAGTTCAGTTCTTCTACGGAGATCCGCTGCCTTAGCGGCCTCCAGAGGTAGAGTTAGTTCTACCTTCTTAGCCCCAATCGCGAACTTTTTAACGTCTTCTGTGGATGTTAATGGCGGTGTTGTACCTGCTGCTGAGTTCGGACGTTTCTCCACTACTGGGGTGACGGAGAGAGCTTTGGGTTTTGGTTTTCAATCGATGGGATTTCACTCGGCTTCTGGGCCGTTGGGTTTTAAGTCGTCGTTGGTTTCCCGGGCGGAGTTTGCGGTGGAGGAATACGATGATGCTAGCAGTAGTAAAAGCGGTGATGACGGACTCGAGATTGGCAGTCTCGGGATCGCGCCGGAGATTGTTTCTGCTTTGGCGAAAAAGGGTATAACGAAGCTCTTCCCTATTCAGAGAGCCGTGCTAGAACCAGCCATGCAAGGCCGTGACATGATTGGTCGTGCTAGAACTGGAACAGGAAAAACTCTTGCTTTTGGAATACCCATCTTGGATAAAATCATTCAGTTCAATGCGAAACACGGAAGAGGAAGGTACCCGTTGGCCCTGGTTCTAGCTCCAACAAGGGAACTTGCTCGGCAGGTTGAAAAAGAGTTTCAAGAGGCTGCACCTAATTTGGACACAATATGTGTTTATGGAGGGGCACCAATTTCACGCCAAATGAGGCAGCTTGACTATGGCGTTGACATAGCTGTTGGCACACCTGGTCGCTTGATTGATCTTCTCAATAGGGGTTCGCTTAATTTATCAGAAGTCCAGTTTGTTGTTCTCGATGAAGCAGATCAGATGCTTCAAGTAGGCTTTCAAGAGGATGTTGAGAAGATCTTGGAGAGGTTGCCTCAGAAACGTCAGACTATGATGTTCTCTGCAACAATGCCATCTTGGATCAGAAAACTCACTCAAAATTACCTAACCAATCCATTAACTATTGATCTTGTTGGAGATTCTGATCAGAAATTGGCAGATGGAATTAGCCTATTTTCAATTGTTTCAGATATGCGTGGAAAAGCATCAATAATTGGACCTCTGATAACAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACGAAACGTGATGCTGATAGATTAGCCTATGCAATGGCAAGGAACTTCAGATGTGAAGCTTTGCATGGAGATATTTCACAGTCTCAGAGAGAAAGAACTCTTTCTGGTTTTAGAGACGGACATTTCAACGTTTTAGTTGCAACTGATGTTGCAGCAAGGGGTCTTGATATACCCAATGTTGATCTTGTAATACATTTTGAGCTTCCAAACAACACAGAGATATTTGTCCATAGATCAGGACGTACAGGTCGTGCTGGCAAGAAAGGTAGTGCTATTCTTATTTACTCACAGGATCAGTCAAGGGCTGTCAGGATGATTGAGCGTGAAGTAGGCTGCAGATTTAATGAGCTTCCGAAGATCTCTGTTGAGAGTGGTGCTCATGTCGATATGTTCAGTGGTGGTGGTCAATTTAGTTCTTTTGGAGGAGGAGGATTCAGGGATCGTCGAATGAATGATTCAGGCCGTTTTGGTGGTCAAAGAGGTCCAAGTTTTGGTCGTTCGGCAGGTTATGAAAATTCAGGTTTTAGACGTTCCGGTGGCAGGGATTCTTTTGGGCAAGGGGGCAGAAATAGTGAACCTAGCTCTGGCGGTTTCAGTTCATTTGGGTCTCGTAGCTCTGGATCTGCATTTGGTGGATCTAGCTCGAACAATGCAGGATCTTTTGGTAGTTTTGGTTCTGGTCGTTCTGGTGGGTTTGGAGACTTCGGCAGTTCTAGTCGATCCGGTGGCTTCGGGGATTTCGGTGGTTCAGGTCGTAGTTCAGGATTTGGTGACAGAAATTCCAAAAACTCTGGCTTATTTGGTGACATGGATGCGGATCAGAGAACTGGGAAAAGACAGTTCTGA

Protein sequence

MMSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTERALGFGFQSMGFHSASGPLGFKSSLVSRAEFAVEEYDDASSSKSGDDGLEIGSLGIAPEIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGRYPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGTPGRLIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIRKLTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNVDLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELPKISVESGAHVDMFSGGGQFSSFGGGGFRDRRMNDSGRFGGQRGPSFGRSAGYENSGFRRSGGRDSFGQGGRNSEPSSGGFSSFGSRSSGSAFGGSSSNNAGSFGSFGSGRSGGFGDFGSSSRSGGFGDFGGSGRSSGFGDRNSKNSGLFGDMDADQRTGKRQF

Homology

[Close]

BLAST of Carg24710 vs. NCBI nr
Match: XP_022940069.1 (DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 994.6 bits (2570), Expect = 1.6e-286
Identity = 512/513 (99.81%), Postives = 512/513 (99.81%), Query Frame = 0


Query: 1   MMSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTERA 60
           MMSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGG VPAAEFGRFSTTGVTERA
Sbjct: 1   MMSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGAVPAAEFGRFSTTGVTERA 60

Query: 61  LGFGFQSMGFHSASGPLGFKSSLVSRAEFAVEEYDDASSSKSGDDGLEIGSLGIAPEIVS 120
           LGFGFQSMGFHSASGPLGFKSSLVSRAEFAVEEYDDASSSKSGDDGLEIGSLGIAPEIVS
Sbjct: 61  LGFGFQSMGFHSASGPLGFKSSLVSRAEFAVEEYDDASSSKSGDDGLEIGSLGIAPEIVS 120

Query: 121 ALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGR 180
           ALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGR
Sbjct: 121 ALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGR 180

Query: 181 YPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGTPGRL 240
           YPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGTPGRL
Sbjct: 181 YPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGTPGRL 240

Query: 241 IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIRK 300
           IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIRK
Sbjct: 241 IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIRK 300

Query: 301 LTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGKCIVFTQ 360
           LTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGKCIVFTQ
Sbjct: 301 LTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGKCIVFTQ 360

Query: 361 TKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNV 420
           TKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNV
Sbjct: 361 TKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNV 420

Query: 421 DLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELPKI 480
           DLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELPKI
Sbjct: 421 DLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELPKI 480

Query: 481 SVESGAHVDMFSGGGQFSSFGGGGFRDRRMNDS 514
           SVESGAHVDMFSGGGQFSSFGGGGFRDRRMNDS
Sbjct: 481 SVESGAHVDMFSGGGQFSSFGGGGFRDRRMNDS 513

[Close]

BLAST of Carg24710 vs. NCBI nr
Match: XP_023524742.1 (DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 989.2 bits (2556), Expect = 6.6e-285
Identity = 637/641 (99.38%), Postives = 639/641 (99.69%), Query Frame = 0


Query: 1   MMSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTERA 60
           MMSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTERA
Sbjct: 1   MMSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTERA 60

Query: 61  LGFGFQSMGFHSASGPLGFKSSLVSRAEFAVEEYDDASSSKSGDDGLEIGSLGIAPEIVS 120
           LGFGFQSMGFHSASGPL FKSSLVSRAEFAVE+YDDASSSKSGD+GLEIGSLGIAPEIVS
Sbjct: 61  LGFGFQSMGFHSASGPLSFKSSLVSRAEFAVEDYDDASSSKSGDEGLEIGSLGIAPEIVS 120

Query: 121 ALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGR 180
           ALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGR
Sbjct: 121 ALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGR 180

Query: 181 YPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGTPGRL 240
           YPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPIS QMRQLDYGVDIAVGTPGRL
Sbjct: 181 YPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISGQMRQLDYGVDIAVGTPGRL 240

Query: 241 IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIRK 300
           IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIRK
Sbjct: 241 IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIRK 300

Query: 301 LTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGKCIVFTQ 360
           LTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGKCIVFTQ
Sbjct: 301 LTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGKCIVFTQ 360

Query: 361 TKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNV 420
           TKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNV
Sbjct: 361 TKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNV 420

Query: 421 DLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELPKI 480
           DLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELPKI
Sbjct: 421 DLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELPKI 480

Query: 481 SVESGAHVDMFSGGGQFSSFGGGGFRDRRMNDSXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           SVESGAHVDMFSGGGQFSSFGGGGFRDRRMNDSXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 481 SVESGAHVDMFSGGGQFSSFGGGGFRDRRMNDSXXXXXXXXXXXXXXXXXXXXXXXXXXX 540

Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 600

Query: 601 XXXXXXXXXXXXXXXXXXXXSKNSGLFGDMDADQRTGKRQF 642
           XXXXXXXXXXXXXXXXXXXXSKNSGLFGDMDADQRTGKRQF
Sbjct: 601 XXXXXXXXXXXXXXXXXXXXSKNSGLFGDMDADQRTGKRQF 641

[Close]

BLAST of Carg24710 vs. NCBI nr
Match: XP_022981751.1 (DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 981.5 bits (2536), Expect = 1.4e-282
Identity = 507/513 (98.83%), Postives = 510/513 (99.42%), Query Frame = 0


Query: 1   MMSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTERA 60
           MMSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTERA
Sbjct: 1   MMSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTERA 60

Query: 61  LGFGFQSMGFHSASGPLGFKSSLVSRAEFAVEEYDDASSSKSGDDGLEIGSLGIAPEIVS 120
           LGFGFQSMGFH+ASGPL FKSSLVSRAEFAVEEYDDASSSKSGD+GLEIGSLGIAPEIVS
Sbjct: 61  LGFGFQSMGFHAASGPLSFKSSLVSRAEFAVEEYDDASSSKSGDEGLEIGSLGIAPEIVS 120

Query: 121 ALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGR 180
           ALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGR
Sbjct: 121 ALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGR 180

Query: 181 YPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGTPGRL 240
           YPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGTPGRL
Sbjct: 181 YPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGTPGRL 240

Query: 241 IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIRK 300
           IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIRK
Sbjct: 241 IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIRK 300

Query: 301 LTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGKCIVFTQ 360
           LTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDM GKASIIGPLITEHAKGGKCIVFTQ
Sbjct: 301 LTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMHGKASIIGPLITEHAKGGKCIVFTQ 360

Query: 361 TKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNV 420
           TKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNV
Sbjct: 361 TKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNV 420

Query: 421 DLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELPKI 480
           DLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELP+I
Sbjct: 421 DLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELPRI 480

Query: 481 SVESGAHVDMFSGGGQFSSFGGGGFRDRRMNDS 514
           SVESGAHVDMFSGGGQFSSF GGGFRDRRMNDS
Sbjct: 481 SVESGAHVDMFSGGGQFSSF-GGGFRDRRMNDS 512

[Close]

BLAST of Carg24710 vs. NCBI nr
Match: XP_022981753.1 (DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 981.5 bits (2536), Expect = 1.4e-282
Identity = 507/513 (98.83%), Postives = 510/513 (99.42%), Query Frame = 0


Query: 1   MMSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTERA 60
           MMSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTERA
Sbjct: 1   MMSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTERA 60

Query: 61  LGFGFQSMGFHSASGPLGFKSSLVSRAEFAVEEYDDASSSKSGDDGLEIGSLGIAPEIVS 120
           LGFGFQSMGFH+ASGPL FKSSLVSRAEFAVEEYDDASSSKSGD+GLEIGSLGIAPEIVS
Sbjct: 61  LGFGFQSMGFHAASGPLSFKSSLVSRAEFAVEEYDDASSSKSGDEGLEIGSLGIAPEIVS 120

Query: 121 ALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGR 180
           ALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGR
Sbjct: 121 ALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGR 180

Query: 181 YPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGTPGRL 240
           YPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGTPGRL
Sbjct: 181 YPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGTPGRL 240

Query: 241 IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIRK 300
           IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIRK
Sbjct: 241 IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIRK 300

Query: 301 LTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGKCIVFTQ 360
           LTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDM GKASIIGPLITEHAKGGKCIVFTQ
Sbjct: 301 LTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMHGKASIIGPLITEHAKGGKCIVFTQ 360

Query: 361 TKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNV 420
           TKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNV
Sbjct: 361 TKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNV 420

Query: 421 DLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELPKI 480
           DLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELP+I
Sbjct: 421 DLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELPRI 480

Query: 481 SVESGAHVDMFSGGGQFSSFGGGGFRDRRMNDS 514
           SVESGAHVDMFSGGGQFSSF GGGFRDRRMNDS
Sbjct: 481 SVESGAHVDMFSGGGQFSSF-GGGFRDRRMNDS 512

[Close]

BLAST of Carg24710 vs. NCBI nr
Match: XP_004149532.2 (PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis sativus] >KGN54960.1 hypothetical protein Csa_4G616790 [Cucumis sativus])

HSP 1 Score: 880.9 bits (2275), Expect = 2.5e-252
Identity = 452/512 (88.28%), Postives = 484/512 (94.53%), Query Frame = 0


Query: 1   MMSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTERA 60
           MMS++LLRRS+ALAAS GR++ST  APIANFL+S V VNGGVVPAA+F  FST GVTE++
Sbjct: 1   MMSAILLRRSSALAASGGRINSTLFAPIANFLSSPVVVNGGVVPAADFQHFSTIGVTEKS 60

Query: 61  LGFGFQSMGFHSASGPLGFKSSLVSRAEFAVEEYDDASSSKSGDDGLEIGSLGIAPEIVS 120
           LGFGFQS GFH+ASGPL FK+SLVS+AEFAVE+YD ASSSKSGD+GLEIG LGIAPEIVS
Sbjct: 61  LGFGFQSKGFHAASGPLNFKASLVSKAEFAVEDYDCASSSKSGDEGLEIGKLGIAPEIVS 120

Query: 121 ALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGR 180
           ALA+KGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK+IQFNAK+GRGR
Sbjct: 121 ALARKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKLIQFNAKNGRGR 180

Query: 181 YPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGTPGRL 240
            PLALVLAPTRELARQVEKEFQEAAP+LDTICVYGGAPIS+QMRQLDYGVDIAVGTPGRL
Sbjct: 181 NPLALVLAPTRELARQVEKEFQEAAPSLDTICVYGGAPISQQMRQLDYGVDIAVGTPGRL 240

Query: 241 IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIRK 300
           IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQ+MMFSATMPSWI K
Sbjct: 241 IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQSMMFSATMPSWILK 300

Query: 301 LTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGKCIVFTQ 360
           L++NYL NPLTIDLVGDSDQKLADGISLFS+VS+  GKASIIGPLITEH KGGKCI+FTQ
Sbjct: 301 LSRNYLNNPLTIDLVGDSDQKLADGISLFSVVSETYGKASIIGPLITEHGKGGKCIIFTQ 360

Query: 361 TKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNV 420
           TKRDADRLAYAM RN RCEALHGDISQSQRERTLSGFRDG FNVLVATDVAARGLDIPNV
Sbjct: 361 TKRDADRLAYAMGRNLRCEALHGDISQSQRERTLSGFRDGRFNVLVATDVAARGLDIPNV 420

Query: 421 DLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELPKI 480
           DLVIHFELPNNTEIFVHRSGRTGRAGKKGS ILIYSQDQ+RA+RMIEREVGCRFNELP+I
Sbjct: 421 DLVIHFELPNNTEIFVHRSGRTGRAGKKGSVILIYSQDQTRAIRMIEREVGCRFNELPRI 480

Query: 481 SVESGAHVDMFSGGGQFSSFGGGGFRDRRMND 513
           +VE+GAHVDMFSGG    SF GGGF DR+MN+
Sbjct: 481 TVEAGAHVDMFSGG----SF-GGGFGDRQMNN 507

[Close]

BLAST of Carg24710 vs. TAIR10
Match: AT3G22330.1 (putative mitochondrial RNA helicase 2)

HSP 1 Score: 673.3 bits (1736), Expect = 1.5e-193
Identity = 337/450 (74.89%), Postives = 387/450 (86.00%), Query Frame = 0


Query: 63  FGFQSMGFHSASGPLGFKSSLVSRAEFAVEEYDD---ASSSKSGDDGLEIGSLGIAPEIV 122
           FG ++ G H  SGPL F++S+VS+A FA+ E  +     S   G DGL I  LGI+PEIV
Sbjct: 57  FGVEAKGIHFQSGPLDFRASMVSQAGFAISESSERRVGDSESVGGDGLAISELGISPEIV 116

Query: 123 SALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRG 182
            AL+ KGI KLFPIQ+AVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKII++NAKHGRG
Sbjct: 117 KALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRG 176

Query: 183 RYPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGTPGR 242
           R PL LVLAPTRELARQVEKEF+E+AP+LDTIC+YGG PI +QMRQLDYGVD+AVGTPGR
Sbjct: 177 RNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGR 236

Query: 243 LIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIR 302
           +IDL+ RG+LNLSEVQFVVLDEADQMLQVGF EDVE ILE+LP+KRQ+MMFSATMPSWIR
Sbjct: 237 VIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIR 296

Query: 303 KLTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGKCIVFT 362
            LT+ YL NPLT+DLVGDSDQKLADGI+ +SI++D  G+ASIIGPL+TEHAKGGKCIVFT
Sbjct: 297 SLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFT 356

Query: 363 QTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPN 422
           QTKRDADRL+YA+AR+F+CEALHGDISQSQRERTL+GFRDGHFN+LVATDVAARGLD+PN
Sbjct: 357 QTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPN 416

Query: 423 VDLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELPK 482
           VDL+IH+ELPNNTE FVHR+G        GSAILIYSQDQSRAV++IEREVG RF ELP 
Sbjct: 417 VDLIIHYELPNNTETFVHRTGXXXXXXXXGSAILIYSQDQSRAVKIIEREVGSRFTELPS 476

Query: 483 ISVESGAHVDMFSG-GGQFSSFGGGGFRDR 509
           I+VE G+   MF G G +     GGG RDR
Sbjct: 477 IAVERGS-ASMFEGIGSRSGGSFGGGMRDR 505

[Close]

BLAST of Carg24710 vs. TAIR10
Match: AT3G22310.1 (putative mitochondrial RNA helicase 1)

HSP 1 Score: 633.3 bits (1632), Expect = 1.7e-181
Identity = 335/516 (64.92%), Postives = 398/516 (77.13%), Query Frame = 0


Query: 2   MSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTERAL 61
           M S +LRRS  L  SR R  +  +  I   L  ++      V     G  +   +   + 
Sbjct: 1   MISTVLRRS-ILGTSR-RTLAASVTSINAALFHNLAPAAATVSDLANGATNVKSLPSNSS 60

Query: 62  GFGFQSMGFHSASGPLGFKSSLVSRAEFAVEEY------------DDASSSKSGDDGLEI 121
            FG +   FH  S P  F+SS+VS A FA +EY             ++  S  G DGL I
Sbjct: 61  PFGVKVRDFHVKSVPSEFRSSIVSSAGFAAQEYAPSYENDGGIGDSESVGSSGGGDGLAI 120

Query: 122 GSLGIAPEIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 181
             LGI+PEIV AL  +GI KLFPIQ+AVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKI
Sbjct: 121 ADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI 180

Query: 182 IQFNAKHGRGRYPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYG 241
           I+FNAKHGRG+ P  LVLAPTRELARQVEKEF+E+AP+LDTIC+YGG PI +QMR+L+YG
Sbjct: 181 IKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNYG 240

Query: 242 VDIAVGTPGRLIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMM 301
           +D+AVGTPGR+IDL+ RG+LNLSEVQFVVLDEADQMLQVGF EDVE IL++LP KRQ+MM
Sbjct: 241 IDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMM 300

Query: 302 FSATMPSWIRKLTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEH 361
           FSATMPSWIR LT+ YL NPLTIDLVGDSDQKLADGI+++SI +D  G+ASIIGPL+ EH
Sbjct: 301 FSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEH 360

Query: 362 AKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATD 421
            KGGKCIVFTQTKRDADRLA+ +A++++CEALHGDISQ+QRERTL+GFRDG+F++LVATD
Sbjct: 361 GKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATD 420

Query: 422 VAARGLDIPNVDLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIERE 481
           VAARGLD+PNVDLVIH+ELPNNTE FVHR+G        GSAILI+ QDQ+RAV+MIE+E
Sbjct: 421 VAARGLDVPNVDLVIHYELPNNTETFVHRTGXXXXXXXXGSAILIHGQDQTRAVKMIEKE 480

Query: 482 VGCRFNELPKISVESGAHVDMFSGGGQFSSFGGGGF 506
           VG RFNELP I+VE G+   MF G G  S   GG F
Sbjct: 481 VGSRFNELPSIAVERGS-ASMFEGVGARS---GGSF 510

[Close]

BLAST of Carg24710 vs. TAIR10
Match: AT5G26742.2 (DEAD box RNA helicase (RH3))

HSP 1 Score: 472.2 bits (1214), Expect = 4.9e-133
Identity = 238/388 (61.34%), Postives = 295/388 (76.03%), Query Frame = 0


Query: 93  EYDDASSSKSGDDG--LEIGSLGIAPEIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGR 152
           + D  +++   DDG  L I  L +   +  +L K+GIT LFPIQRAVL PA+QGRD+I R
Sbjct: 86  DLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIAR 145

Query: 153 ARTGTGKTLAFGIPILDKIIQ----FNAKHGRGRYPLALVLAPTRELARQVEKEFQEAAP 212
           A+TGTGKTLAFGIPI+ ++ +    + A    GR P  LVLAPTRELA+QVEKE +E+AP
Sbjct: 146 AKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAP 205

Query: 213 NLDTICVYGGAPISRQMRQLDYGVDIAVGTPGRLIDLLNRGSLNLSEVQFVVLDEADQML 272
            L T+CVYGG   + Q   L  GVD+ VGTPGR+IDL+   SL L EV+++VLDEADQML
Sbjct: 206 YLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQML 265

Query: 273 QVGFQEDVEKILERLPQKRQTMMFSATMPSWIRKLTQNYLTNPLTIDLVGDSDQKLADGI 332
            VGF+E VE ILE LP KRQ+M+FSATMP+W++KL + YL NPL IDLVGD D+KLA+GI
Sbjct: 266 AVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGI 325

Query: 333 SLFSIVSDMRGKASIIGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDIS 392
            L++I +    K +I+  LIT +AKGGK IVFTQTKRDAD ++ A++ +   EALHGDIS
Sbjct: 326 KLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDIS 385

Query: 393 QSQRERTLSGFRDGHFNVLVATDVAARGLDIPNVDLVIHFELPNNTEIFVHRSGRTGRAG 452
           Q QRERTL+ FR G F VLVATDVA+RGLDIPNVDLVIH+ELPN+ E FVHRSGRTGRAG
Sbjct: 386 QHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAG 445

Query: 453 KKGSAILIYSQDQSRAVRMIEREVGCRF 475
           K+GSAIL+++  Q R VR +ER+VGC F
Sbjct: 446 KEGSAILMHTSSQKRTVRSLERDVGCHF 473

[Close]

BLAST of Carg24710 vs. TAIR10
Match: AT5G62190.1 (DEAD box RNA helicase (PRH75))

HSP 1 Score: 298.9 bits (764), Expect = 7.5e-81
Identity = 169/383 (44.13%), Postives = 238/383 (62.14%), Query Frame = 0


Query: 104 DDGLEIGSLGIAPEIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGI 163
           D+   +    I+  +   L   GI  LFPIQ +  +  + G D++GRARTG GKTLAF +
Sbjct: 93  DNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVL 152

Query: 164 PILDKIIQFNAKH----GRGRYPLALVLAPTRELARQVEKEFQE--AAPNLDTICVYGGA 223
           PIL+ ++   AK     G GR P  LVL PTRELA+QV  +F     +  L + C+YGG 
Sbjct: 153 PILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGD 212

Query: 224 PISRQMRQLDYGVDIAVGTPGRLIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKI 283
               Q  +L  GVDI VGTPGR+ D + R +L+ S +QF VLDEAD+ML++GF EDVE I
Sbjct: 213 SYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELI 272

Query: 284 LERLPQ--KRQTMMFSATMPSWIRKLTQNYL-TNPLTIDLVGDSDQKLADGISLFSIVSD 343
           L ++    K QT++FSAT+PSW++ ++  +L  +  TIDLVG+   K ++ +   +I  +
Sbjct: 273 LGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCN 332

Query: 344 MRGKASIIGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTL 403
               A +I  +I+ ++ GG+ I+F +TK     L+  +  +    ALHG+I QSQRE TL
Sbjct: 333 KAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGS---RALHGEIPQSQREVTL 392

Query: 404 SGFRDGHFNVLVATDVAARGLDIPNVDLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILI 463
           +GFR+G F  LVAT+VAARGLDI +V L+I  E P   E ++HRSGRTGRAG  G A+ +
Sbjct: 393 AGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTL 452

Query: 464 YSQDQSRAVRMIEREVGCRFNEL 478
           Y   +S +V  IE+E G +F  L
Sbjct: 453 YDSRKS-SVSRIEKEAGIKFEHL 471

[Close]

BLAST of Carg24710 vs. TAIR10
Match: AT3G01540.2 (DEAD box RNA helicase 1)

HSP 1 Score: 261.5 bits (667), Expect = 1.3e-69
Identity = 168/472 (35.59%), Postives = 250/472 (52.97%), Query Frame = 0


Query: 46  AEFGRFSTTGVTERALGFGFQSMGFHSASGPLGFKSSLVSRAEFAVEEYD-----DASSS 105
           +E GR         A G G  + G  S   PL    S    +E + E Y        S  
Sbjct: 95  SEGGRSGPPYSNGAANGVGDSAYGAASTRVPL---PSSAPASELSPEAYSRRHEITVSGG 154

Query: 106 KSGDDGLEIGSLGIAPEIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLA 165
           +     +   + G  PE++  +   G +   PIQ      AMQGRD++  A+TG+GKTL 
Sbjct: 155 QVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLG 214

Query: 166 FGIPILDKIIQFNAKHGRGRYPLALVLAPTRELARQVEKEFQE--AAPNLDTICVYGGAP 225
           + IP    + +       G  P  LVL+PTRELA Q+++E  +   +  +   C+YGGAP
Sbjct: 215 YLIPGFLHLQRIRNDSRMG--PTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAP 274

Query: 226 ISRQMRQLDYGVDIAVGTPGRLIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKIL 285
              Q+R L+ G DI V TPGRL D+L    ++L ++ ++VLDEAD+ML +GF+  + KI+
Sbjct: 275 KGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIV 334

Query: 286 ERLPQKRQTMMFSATMPSWIRKLTQNYLTNPLTIDLVGDSDQKLADG--ISLFSIVSDMR 345
           + +P KRQT+M++AT P  +RK+  + L NP  ++ +G+ D+ +A+        +V+ M 
Sbjct: 335 KEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVN-IGNVDELVANKSITQHIEVVAPME 394

Query: 346 GKASIIGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSG 405
            K   +  ++     G K I+F  TKR  D+L   + R F   A+HGD SQ +R+  L+ 
Sbjct: 395 -KQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQ 454

Query: 406 FRDGHFNVLVATDVAARGLDIPNVDLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIY- 465
           FR G   VLVATDVAARGLD+ ++  V++++ PN  E +VHR GRTGRAG  G A   + 
Sbjct: 455 FRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFG 514

Query: 466 SQDQSRAVRMIEREVGCRFNELPKI---SVESGAHVDMFSGGGQFSSFGGGG 505
            QD   A  +I+   G      P+I   +   G  ++ FS  G  S   G G
Sbjct: 515 DQDSKHASDLIKILEGANQRVPPQIREMATRGGGGMNKFSRWGPPSGGRGRG 559

[Close]

BLAST of Carg24710 vs. Swiss-Prot
Match: sp|Q9LUW5|RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH53 PE=1 SV=1)

HSP 1 Score: 673.3 bits (1736), Expect = 2.6e-192
Identity = 337/450 (74.89%), Postives = 387/450 (86.00%), Query Frame = 0


Query: 63  FGFQSMGFHSASGPLGFKSSLVSRAEFAVEEYDD---ASSSKSGDDGLEIGSLGIAPEIV 122
           FG ++ G H  SGPL F++S+VS+A FA+ E  +     S   G DGL I  LGI+PEIV
Sbjct: 57  FGVEAKGIHFQSGPLDFRASMVSQAGFAISESSERRVGDSESVGGDGLAISELGISPEIV 116

Query: 123 SALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRG 182
            AL+ KGI KLFPIQ+AVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKII++NAKHGRG
Sbjct: 117 KALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRG 176

Query: 183 RYPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGTPGR 242
           R PL LVLAPTRELARQVEKEF+E+AP+LDTIC+YGG PI +QMRQLDYGVD+AVGTPGR
Sbjct: 177 RNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGR 236

Query: 243 LIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIR 302
           +IDL+ RG+LNLSEVQFVVLDEADQMLQVGF EDVE ILE+LP+KRQ+MMFSATMPSWIR
Sbjct: 237 VIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIR 296

Query: 303 KLTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGKCIVFT 362
            LT+ YL NPLT+DLVGDSDQKLADGI+ +SI++D  G+ASIIGPL+TEHAKGGKCIVFT
Sbjct: 297 SLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFT 356

Query: 363 QTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPN 422
           QTKRDADRL+YA+AR+F+CEALHGDISQSQRERTL+GFRDGHFN+LVATDVAARGLD+PN
Sbjct: 357 QTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPN 416

Query: 423 VDLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELPK 482
           VDL+IH+ELPNNTE FVHR+G        GSAILIYSQDQSRAV++IEREVG RF ELP 
Sbjct: 417 VDLIIHYELPNNTETFVHRTGXXXXXXXXGSAILIYSQDQSRAVKIIEREVGSRFTELPS 476

Query: 483 ISVESGAHVDMFSG-GGQFSSFGGGGFRDR 509
           I+VE G+   MF G G +     GGG RDR
Sbjct: 477 IAVERGS-ASMFEGIGSRSGGSFGGGMRDR 505

[Close]

BLAST of Carg24710 vs. Swiss-Prot
Match: sp|Q9LUW6|RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH9 PE=1 SV=1)

HSP 1 Score: 633.3 bits (1632), Expect = 3.0e-180
Identity = 335/516 (64.92%), Postives = 398/516 (77.13%), Query Frame = 0


Query: 2   MSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTERAL 61
           M S +LRRS  L  SR R  +  +  I   L  ++      V     G  +   +   + 
Sbjct: 1   MISTVLRRS-ILGTSR-RTLAASVTSINAALFHNLAPAAATVSDLANGATNVKSLPSNSS 60

Query: 62  GFGFQSMGFHSASGPLGFKSSLVSRAEFAVEEY------------DDASSSKSGDDGLEI 121
            FG +   FH  S P  F+SS+VS A FA +EY             ++  S  G DGL I
Sbjct: 61  PFGVKVRDFHVKSVPSEFRSSIVSSAGFAAQEYAPSYENDGGIGDSESVGSSGGGDGLAI 120

Query: 122 GSLGIAPEIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKI 181
             LGI+PEIV AL  +GI KLFPIQ+AVLEPAM+GRDMIGRARTGTGKTLAFGIPI+DKI
Sbjct: 121 ADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI 180

Query: 182 IQFNAKHGRGRYPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYG 241
           I+FNAKHGRG+ P  LVLAPTRELARQVEKEF+E+AP+LDTIC+YGG PI +QMR+L+YG
Sbjct: 181 IKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNYG 240

Query: 242 VDIAVGTPGRLIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMM 301
           +D+AVGTPGR+IDL+ RG+LNLSEVQFVVLDEADQMLQVGF EDVE IL++LP KRQ+MM
Sbjct: 241 IDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMM 300

Query: 302 FSATMPSWIRKLTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEH 361
           FSATMPSWIR LT+ YL NPLTIDLVGDSDQKLADGI+++SI +D  G+ASIIGPL+ EH
Sbjct: 301 FSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEH 360

Query: 362 AKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATD 421
            KGGKCIVFTQTKRDADRLA+ +A++++CEALHGDISQ+QRERTL+GFRDG+F++LVATD
Sbjct: 361 GKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATD 420

Query: 422 VAARGLDIPNVDLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIERE 481
           VAARGLD+PNVDLVIH+ELPNNTE FVHR+G        GSAILI+ QDQ+RAV+MIE+E
Sbjct: 421 VAARGLDVPNVDLVIHYELPNNTETFVHRTGXXXXXXXXGSAILIHGQDQTRAVKMIEKE 480

Query: 482 VGCRFNELPKISVESGAHVDMFSGGGQFSSFGGGGF 506
           VG RFNELP I+VE G+   MF G G  S   GG F
Sbjct: 481 VGSRFNELPSIAVERGS-ASMFEGVGARS---GGSF 510

[Close]

BLAST of Carg24710 vs. Swiss-Prot
Match: sp|Q0D8N0|RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0143700 PE=2 SV=2)

HSP 1 Score: 612.5 bits (1578), Expect = 5.5e-174
Identity = 312/450 (69.33%), Postives = 368/450 (81.78%), Query Frame = 0


Query: 70  FHSASGPLGFKSSLVSRAEFAVEEYDDASSSKSGDDGLEIGSLGIAPEIVSALAKKGITK 129
           FH +  PLGF+S+  S +        +A ++  GDDGLE+  LGI+P IV  LA +GIT+
Sbjct: 53  FHGSPSPLGFRSTPASWSS------PEAGAAVGGDDGLEVARLGISPWIVERLAARGITR 112

Query: 130 LFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGRYPLALVLAP 189
           LFPIQRAVL+PAMQG+DMIGRARTGTGKTLAFGIPI+D+I++ N K+G GR PLA++LAP
Sbjct: 113 LFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAP 172

Query: 190 TRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGTPGRLIDLLNRGSL 249
           TRELARQVEKEF+E+AP LD++CVYGG PIS QMR L+YGVD+ VGTPGR+IDLL RG L
Sbjct: 173 TRELARQVEKEFKESAP-LDSLCVYGGVPISHQMRALNYGVDVVVGTPGRIIDLLRRGVL 232

Query: 250 NLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIRKLTQNYLTNP 309
           NLSE+QFVVLDEADQML VGF EDVE I+E LPQ RQ+M+FSATMPSWIRK+T  YL +P
Sbjct: 233 NLSEIQFVVLDEADQMLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDP 292

Query: 310 LTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGKCIVFTQTKRDADRLA 369
           + IDLVGD DQKL +GISL+SI S+  GK SI+GPLI EHA GGKCIVFTQTKR+ADRLA
Sbjct: 293 IIIDLVGDEDQKLPEGISLYSIASEHYGKPSILGPLIKEHANGGKCIVFTQTKREADRLA 352

Query: 370 YAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNVDLVIHFELP 429
           YAM R++ C+ALHGDISQ+QRERTLSGFRDG FN+LVATDVAARGLDIPNVDLVIH+ELP
Sbjct: 353 YAMGRSYACQALHGDISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVIHYELP 412

Query: 430 NNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELPKISVESGAHVD 489
           N +E+FVHRSGRT RAGKKGSAILIY+ DQ+RAVR+IE+++GC+F ELPKI V   A  D
Sbjct: 413 NTSELFVHRSGRTARAGKKGSAILIYTNDQARAVRIIEQDIGCKFTELPKIEVADEAS-D 472

Query: 490 MFS--------------GGGQFSSFGGGGF 506
           MF+               GG  SSFG GG+
Sbjct: 473 MFNVVRDNRSRLAGSPRTGG--SSFGRGGY 492

[Close]

BLAST of Carg24710 vs. Swiss-Prot
Match: sp|Q0ILZ4|RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0611200 PE=2 SV=1)

HSP 1 Score: 590.9 bits (1522), Expect = 1.7e-167
Identity = 294/447 (65.77%), Postives = 368/447 (82.33%), Query Frame = 0


Query: 70  FHSASGPLGFK----SSLVSRAEFAVEE----YDDASSSKSG-------DDGLEIGSLGI 129
           FHS+   LGF+    +   +R ++A +E     +D   +K+G       ++GLE+  LGI
Sbjct: 46  FHSSPAWLGFRETGAAGAAARPQYAADEGLFYEEDKRGAKAGGVAAGGAEEGLEVAKLGI 105

Query: 130 APEIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNA 189
           +P+IVS LA +GITKLFPIQRAVLEPAMQG+DM+GRA+TGTGKTLAFGIPILD II+ N 
Sbjct: 106 SPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNE 165

Query: 190 KHGRGRYPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAV 249
           K+  G++PLA+VLAPTRELA+QVE+EF +++ N++TICVYGG PIS+Q+RQL+YGVD+ +
Sbjct: 166 KNSPGKFPLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQIRQLNYGVDVVI 225

Query: 250 GTPGRLIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATM 309
           GTPGR+IDLL RG+LNLSEV+FVVLDEADQML VGF EDVE IL+R+P KRQT+MFSATM
Sbjct: 226 GTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSATM 285

Query: 310 PSWIRKLTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGK 369
           P+WI++LTQ YL NP+TIDLVG+ DQKLA+GISL+SI S+   K +++G LI EHAKGGK
Sbjct: 286 PTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAKGGK 345

Query: 370 CIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARG 429
           CIVFTQTKRDADRL+Y M R+F+C+ALHGDI+Q+QRERTL GFR+GHFN+L+ATDVAARG
Sbjct: 346 CIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFNILIATDVAARG 405

Query: 430 LDIPNVDLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRF 489
           LDIPNVDLVIHFELPN++E+FVHRSGRT        AI+++S  QSRA+RM+E +VGC+F
Sbjct: 406 LDIPNVDLVIHFELPNSSELFVHRSGRTXXXXXXXKAIVMHSYQQSRAIRMVENDVGCKF 465

Query: 490 NELPKISVESGAHVDMFSGGGQFSSFG 502
            ELPKI+VE     D+ SGG  F SFG
Sbjct: 466 TELPKINVEGS---DLMSGG--FDSFG 486

[Close]

BLAST of Carg24710 vs. Swiss-Prot
Match: sp|Q8L7S8|RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RH3 PE=1 SV=2)

HSP 1 Score: 472.2 bits (1214), Expect = 8.9e-132
Identity = 238/388 (61.34%), Postives = 295/388 (76.03%), Query Frame = 0


Query: 93  EYDDASSSKSGDDG--LEIGSLGIAPEIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGR 152
           + D  +++   DDG  L I  L +   +  +L K+GIT LFPIQRAVL PA+QGRD+I R
Sbjct: 86  DLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIAR 145

Query: 153 ARTGTGKTLAFGIPILDKIIQ----FNAKHGRGRYPLALVLAPTRELARQVEKEFQEAAP 212
           A+TGTGKTLAFGIPI+ ++ +    + A    GR P  LVLAPTRELA+QVEKE +E+AP
Sbjct: 146 AKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAP 205

Query: 213 NLDTICVYGGAPISRQMRQLDYGVDIAVGTPGRLIDLLNRGSLNLSEVQFVVLDEADQML 272
            L T+CVYGG   + Q   L  GVD+ VGTPGR+IDL+   SL L EV+++VLDEADQML
Sbjct: 206 YLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQML 265

Query: 273 QVGFQEDVEKILERLPQKRQTMMFSATMPSWIRKLTQNYLTNPLTIDLVGDSDQKLADGI 332
            VGF+E VE ILE LP KRQ+M+FSATMP+W++KL + YL NPL IDLVGD D+KLA+GI
Sbjct: 266 AVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGI 325

Query: 333 SLFSIVSDMRGKASIIGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGDIS 392
            L++I +    K +I+  LIT +AKGGK IVFTQTKRDAD ++ A++ +   EALHGDIS
Sbjct: 326 KLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDIS 385

Query: 393 QSQRERTLSGFRDGHFNVLVATDVAARGLDIPNVDLVIHFELPNNTEIFVHRSGRTGRAG 452
           Q QRERTL+ FR G F VLVATDVA+RGLDIPNVDLVIH+ELPN+ E FVHRSGRTGRAG
Sbjct: 386 QHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAG 445

Query: 453 KKGSAILIYSQDQSRAVRMIEREVGCRF 475
           K+GSAIL+++  Q R VR +ER+VGC F
Sbjct: 446 KEGSAILMHTSSQKRTVRSLERDVGCHF 473

[Close]

BLAST of Carg24710 vs. TrEMBL
Match: tr|A0A0A0KZ67|A0A0A0KZ67_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G616790 PE=4 SV=1)

HSP 1 Score: 880.9 bits (2275), Expect = 1.7e-252
Identity = 452/512 (88.28%), Postives = 484/512 (94.53%), Query Frame = 0


Query: 1   MMSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTERA 60
           MMS++LLRRS+ALAAS GR++ST  APIANFL+S V VNGGVVPAA+F  FST GVTE++
Sbjct: 1   MMSAILLRRSSALAASGGRINSTLFAPIANFLSSPVVVNGGVVPAADFQHFSTIGVTEKS 60

Query: 61  LGFGFQSMGFHSASGPLGFKSSLVSRAEFAVEEYDDASSSKSGDDGLEIGSLGIAPEIVS 120
           LGFGFQS GFH+ASGPL FK+SLVS+AEFAVE+YD ASSSKSGD+GLEIG LGIAPEIVS
Sbjct: 61  LGFGFQSKGFHAASGPLNFKASLVSKAEFAVEDYDCASSSKSGDEGLEIGKLGIAPEIVS 120

Query: 121 ALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGR 180
           ALA+KGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDK+IQFNAK+GRGR
Sbjct: 121 ALARKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKLIQFNAKNGRGR 180

Query: 181 YPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGTPGRL 240
            PLALVLAPTRELARQVEKEFQEAAP+LDTICVYGGAPIS+QMRQLDYGVDIAVGTPGRL
Sbjct: 181 NPLALVLAPTRELARQVEKEFQEAAPSLDTICVYGGAPISQQMRQLDYGVDIAVGTPGRL 240

Query: 241 IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIRK 300
           IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQ+MMFSATMPSWI K
Sbjct: 241 IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQSMMFSATMPSWILK 300

Query: 301 LTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGKCIVFTQ 360
           L++NYL NPLTIDLVGDSDQKLADGISLFS+VS+  GKASIIGPLITEH KGGKCI+FTQ
Sbjct: 301 LSRNYLNNPLTIDLVGDSDQKLADGISLFSVVSETYGKASIIGPLITEHGKGGKCIIFTQ 360

Query: 361 TKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNV 420
           TKRDADRLAYAM RN RCEALHGDISQSQRERTLSGFRDG FNVLVATDVAARGLDIPNV
Sbjct: 361 TKRDADRLAYAMGRNLRCEALHGDISQSQRERTLSGFRDGRFNVLVATDVAARGLDIPNV 420

Query: 421 DLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELPKI 480
           DLVIHFELPNNTEIFVHRSGRTGRAGKKGS ILIYSQDQ+RA+RMIEREVGCRFNELP+I
Sbjct: 421 DLVIHFELPNNTEIFVHRSGRTGRAGKKGSVILIYSQDQTRAIRMIEREVGCRFNELPRI 480

Query: 481 SVESGAHVDMFSGGGQFSSFGGGGFRDRRMND 513
           +VE+GAHVDMFSGG    SF GGGF DR+MN+
Sbjct: 481 TVEAGAHVDMFSGG----SF-GGGFGDRQMNN 507

[Close]

BLAST of Carg24710 vs. TrEMBL
Match: tr|A0A1S3CMH1|A0A1S3CMH1_CUCME (DEAD-box ATP-dependent RNA helicase 53 OS=Cucumis melo OX=3656 GN=LOC103502489 PE=4 SV=1)

HSP 1 Score: 880.2 bits (2273), Expect = 2.9e-252
Identity = 453/513 (88.30%), Postives = 483/513 (94.15%), Query Frame = 0


Query: 1   MMSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTERA 60
           MMS++LLRRS+ALAAS GR++ST  APIANFL+S V VNGGVVPAA+F  FST GVTE+ 
Sbjct: 1   MMSAILLRRSSALAASGGRINSTLFAPIANFLSSPVVVNGGVVPAADFEHFSTIGVTEKP 60

Query: 61  LGFGFQSMGFHSASGPLGFKSSLVSRAEFAVEEYDDASSSKSGDDGLEIGSLGIAPEIVS 120
           LGFGFQS GFH+ASGPL FK+SLVS+AEFAVE+YD AS S+SGD+GLEIG LGIAPEIVS
Sbjct: 61  LGFGFQSKGFHAASGPLNFKASLVSKAEFAVEDYDCASGSRSGDEGLEIGKLGIAPEIVS 120

Query: 121 ALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGR 180
           ALAKKGITKLFPIQRAVLEPA+QGRDMIGRARTGTGKTLAFGIPILDKIIQFNAK+GRGR
Sbjct: 121 ALAKKGITKLFPIQRAVLEPAIQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKNGRGR 180

Query: 181 YPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGTPGRL 240
            PLALVLAPTRELARQVEKEFQEAAP+LDTICVYGGAPIS+QMRQLDYGVDIAVGTPGRL
Sbjct: 181 NPLALVLAPTRELARQVEKEFQEAAPSLDTICVYGGAPISQQMRQLDYGVDIAVGTPGRL 240

Query: 241 IDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPSWIRK 300
           IDLLNRGSLNLSEVQF+VLDEADQMLQVGFQEDVEKILERLPQKRQ+MMFSATMPSWI K
Sbjct: 241 IDLLNRGSLNLSEVQFIVLDEADQMLQVGFQEDVEKILERLPQKRQSMMFSATMPSWILK 300

Query: 301 LTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGKCIVFTQ 360
           L++NYLTNPLTIDLVGDSDQKLADGISLFSIVS+  GKASIIGPLITEH KGGKCIVFTQ
Sbjct: 301 LSRNYLTNPLTIDLVGDSDQKLADGISLFSIVSETYGKASIIGPLITEHGKGGKCIVFTQ 360

Query: 361 TKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNV 420
           TKRDADRLAYAM RN RCEALHGDISQSQRERTLSGFRDG FNVLVATDVAARGLDIPNV
Sbjct: 361 TKRDADRLAYAMGRNLRCEALHGDISQSQRERTLSGFRDGRFNVLVATDVAARGLDIPNV 420

Query: 421 DLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNELPKI 480
           DLVIHFELPNNTEIFVHRSGRTGRAGKKGS ILIYSQDQ+RA+RMIEREVGCRFNELP+I
Sbjct: 421 DLVIHFELPNNTEIFVHRSGRTGRAGKKGSVILIYSQDQTRAIRMIEREVGCRFNELPRI 480

Query: 481 SVESGAHVDMFSGGGQFSSFGGGGFRDRRMNDS 514
           +VE+GAHVDMFSGG    SF  GG RDR+MN+S
Sbjct: 481 TVEAGAHVDMFSGG----SF--GGLRDRQMNNS 507

[Close]

BLAST of Carg24710 vs. TrEMBL
Match: tr|A0A2I4GJ28|A0A2I4GJ28_9ROSI (DEAD-box ATP-dependent RNA helicase 53-like OS=Juglans regia OX=51240 GN=LOC109008304 PE=4 SV=1)

HSP 1 Score: 743.4 bits (1918), Expect = 4.2e-211
Identity = 390/520 (75.00%), Postives = 438/520 (84.23%), Query Frame = 0


Query: 2   MSSVLLRRSAALAASRGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTERAL 61
           M ++++RRS+         S+     +A F  SS +     +P    G + +T + +   
Sbjct: 1   MMNIIIRRSS---------STISRLNLAAFACSSFETITTTLPKQYHGYYPSTSLPDLLS 60

Query: 62  GFGF-----QSMGFHSASGPLGFKSSLVSRAEF-AVEEYDDASSSKSG-DDGLEIGSLGI 121
           G G      ++ GFH+ SGPL F +SL SRAEF A+E+Y++AS SK G DDGLEI  L I
Sbjct: 61  GNGIISFLHRARGFHAKSGPLDFSASLPSRAEFAAIEDYEEASPSKLGNDDGLEIAKLDI 120

Query: 122 APEIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNA 181
           +PEI+SALAKKGITKLFPIQRAVL PAMQGRDMIGRARTGTGKTLAFGIPI+DKIIQFNA
Sbjct: 121 SPEIISALAKKGITKLFPIQRAVLVPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNA 180

Query: 182 KHGRGRYPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAV 241
           KHGRGR PLALVLAPTRELARQVEKEF E+AP LDTICVYGGAPIS QMRQLDYGVD+AV
Sbjct: 181 KHGRGRNPLALVLAPTRELARQVEKEFAESAPGLDTICVYGGAPISGQMRQLDYGVDVAV 240

Query: 242 GTPGRLIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATM 301
           GTPGR+IDLLNRG+LNLSEVQFVVLDEADQMLQVGFQ+DVEKILERLPQ RQ++MFSATM
Sbjct: 241 GTPGRIIDLLNRGALNLSEVQFVVLDEADQMLQVGFQDDVEKILERLPQNRQSLMFSATM 300

Query: 302 PSWIRKLTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGK 361
           PSWIRKLTQNYL +P+TIDLVGDSDQKLADGISL+SI SDM GKAS+IGPLITEHA+GGK
Sbjct: 301 PSWIRKLTQNYLKDPVTIDLVGDSDQKLADGISLYSIASDMHGKASVIGPLITEHARGGK 360

Query: 362 CIVFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARG 421
           CIVFTQTKRDADRLAYAMARN++CEALHGDISQSQRERTL+GFRDG+FNVLVATDVAARG
Sbjct: 361 CIVFTQTKRDADRLAYAMARNYKCEALHGDISQSQRERTLAGFRDGNFNVLVATDVAARG 420

Query: 422 LDIPNVDLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRF 481
           LDIPNVDL+IH+ELPNN+EIFVHRSGRTGRAGKKGSAILIY+QDQ RAVR+IEREVGC+F
Sbjct: 421 LDIPNVDLIIHYELPNNSEIFVHRSGRTGRAGKKGSAILIYTQDQMRAVRVIEREVGCKF 480

Query: 482 NELPKISVESGAHVDMFSGGGQFSSFG-GGGFRDRRMNDS 514
            ELP+I+ E GA  DM    G    FG  GG RDRR  DS
Sbjct: 481 TELPRIATEGGASRDMLGDMGGGGRFGFTGGMRDRRSGDS 511

[Close]

BLAST of Carg24710 vs. TrEMBL
Match: tr|A0A2P5AI75|A0A2P5AI75_PARAD (DEAD-box ATP-dependent RNA helicase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_330090 PE=4 SV=1)

HSP 1 Score: 738.8 bits (1906), Expect = 1.0e-209
Identity = 391/514 (76.07%), Postives = 436/514 (84.82%), Query Frame = 0


Query: 1   MMSSVLLRRSAALAAS--RGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTE 60
           MMS+VL RRS A   +  R R  S   A  A+ + S     G   P AE   FS++GV +
Sbjct: 1   MMSTVLRRRSLAAIETLLRHRHYSIAAASAADSVAS-----GNDGPGAEVKSFSSSGVLQ 60

Query: 61  RALGFGFQSMGFHSASGPLGFKSSLVSRAEFA--VEEYDDASSSKSGDDGLEIGSLGIAP 120
           R   +GFQ   FH+ SGPL +++S V +AEFA  V+ YDD+      DDGLEI  LGI+ 
Sbjct: 61  RQSSYGFQVRSFHAKSGPLYYRTSSVLQAEFAVDVDSYDDSLKGSGNDDGLEISKLGISE 120

Query: 121 EIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKH 180
           EIVSALAK+GI+KLFPIQRAVLEPAM+GRDMIGRARTGTGKTLAFGIPILDKIIQFNAKH
Sbjct: 121 EIVSALAKRGISKLFPIQRAVLEPAMEGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKH 180

Query: 181 GRGRYPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGT 240
           GRG+ PLALVLAPTRELARQVEKEFQE+AP+LDTICVYGG PISRQMRQLDYGVDIAVGT
Sbjct: 181 GRGKNPLALVLAPTRELARQVEKEFQESAPSLDTICVYGGTPISRQMRQLDYGVDIAVGT 240

Query: 241 PGRLIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPS 300
           PGR+IDLLNRG+LNL+EV+F+V+DEADQMLQVGFQEDVE+ILERLPQ RQ+MMFSATMPS
Sbjct: 241 PGRIIDLLNRGALNLTEVKFLVIDEADQMLQVGFQEDVERILERLPQNRQSMMFSATMPS 300

Query: 301 WIRKLTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGKCI 360
           WIRKLTQNYL NP+ IDLVGDSDQKLADGISL+SI SDM  KASIIGPLITEHAKGGKCI
Sbjct: 301 WIRKLTQNYLKNPMNIDLVGDSDQKLADGISLYSIASDMHAKASIIGPLITEHAKGGKCI 360

Query: 361 VFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLD 420
           VFTQTKRDADRLAYAMARN RCEALHGDISQSQRERTL+GFRDGHF++LVATDVA+RGLD
Sbjct: 361 VFTQTKRDADRLAYAMARNHRCEALHGDISQSQRERTLAGFRDGHFSILVATDVASRGLD 420

Query: 421 IPNVDLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNE 480
           IPNVDLVIH+ELPNN EIFVHRSGRTGRAGKKGSAI+IY+QDQ+R VRMIEREVG RF E
Sbjct: 421 IPNVDLVIHYELPNNAEIFVHRSGRTGRAGKKGSAIVIYTQDQNRTVRMIEREVGSRFTE 480

Query: 481 LPKISVESGAHVDMFSG-GGQFSSFGGGGFRDRR 510
           LP+I+ + GA+VD F   GG F+     G RDRR
Sbjct: 481 LPRIAGD-GANVDTFGDMGGSFA-----GMRDRR 503

[Close]

BLAST of Carg24710 vs. TrEMBL
Match: tr|A0A2P5ER36|A0A2P5ER36_9ROSA (DEAD-box ATP-dependent RNA helicase OS=Trema orientalis OX=63057 GN=TorRG33x02_162200 PE=4 SV=1)

HSP 1 Score: 735.3 bits (1897), Expect = 1.1e-208
Identity = 389/514 (75.68%), Postives = 436/514 (84.82%), Query Frame = 0


Query: 1   MMSSVLLRRSAALAAS--RGRVSSTFLAPIANFLTSSVDVNGGVVPAAEFGRFSTTGVTE 60
           MMS+VL RRS A   +  R R  S   A  A+ + S    NGG  P AE   FS++ V +
Sbjct: 1   MMSTVLRRRSLAAIETLLRHRQYSIAAASAADSVASG---NGG--PGAEVKSFSSSAVLQ 60

Query: 61  RALGFGFQSMGFHSASGPLGFKSSLVSRAEFA--VEEYDDASSSKSGDDGLEIGSLGIAP 120
           R   +GFQ   FH+  GPL +++S V +AEFA  V+ YD++      D+GLEI  LGI+ 
Sbjct: 61  RQSSYGFQVRSFHAKPGPLYYRASAVLQAEFAVDVDSYDESLKGSGNDEGLEISKLGISE 120

Query: 121 EIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKH 180
           EIVSALAK+GI+KLFPIQRAVLEPAM+GRDMIGRARTGTGKTLAFGIPILDKIIQFNAKH
Sbjct: 121 EIVSALAKRGISKLFPIQRAVLEPAMEGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKH 180

Query: 181 GRGRYPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGAPISRQMRQLDYGVDIAVGT 240
           GRGR PLALVLAPTRELARQVEKEFQE+AP+LDTICVYGG PISRQMRQLDYGVDIAVGT
Sbjct: 181 GRGRNPLALVLAPTRELARQVEKEFQESAPSLDTICVYGGTPISRQMRQLDYGVDIAVGT 240

Query: 241 PGRLIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPQKRQTMMFSATMPS 300
           PGR+IDLLNRG+LNL+EV+F+V+DEADQMLQVGFQEDVE+ILERLPQ RQ+MMFSATMPS
Sbjct: 241 PGRIIDLLNRGALNLTEVKFLVIDEADQMLQVGFQEDVERILERLPQNRQSMMFSATMPS 300

Query: 301 WIRKLTQNYLTNPLTIDLVGDSDQKLADGISLFSIVSDMRGKASIIGPLITEHAKGGKCI 360
           WIRKLTQNYL NP+ IDLVGDSDQKLADGISL+SI SDM  KASIIGPLITEHAKGGKCI
Sbjct: 301 WIRKLTQNYLKNPMNIDLVGDSDQKLADGISLYSIASDMHAKASIIGPLITEHAKGGKCI 360

Query: 361 VFTQTKRDADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDVAARGLD 420
           VFTQTKRDADRLAYAMARN RCEALHGDISQSQRERTL+GFRDGHF++LVATDVA+RGLD
Sbjct: 361 VFTQTKRDADRLAYAMARNLRCEALHGDISQSQRERTLAGFRDGHFSILVATDVASRGLD 420

Query: 421 IPNVDLVIHFELPNNTEIFVHRSGRTGRAGKKGSAILIYSQDQSRAVRMIEREVGCRFNE 480
           IPNVDLVIH+ELPNN EIFVHRSGRTGRAGKKG+AI+IY+QDQ+R VRMIEREVG RF E
Sbjct: 421 IPNVDLVIHYELPNNAEIFVHRSGRTGRAGKKGTAIVIYTQDQNRTVRMIEREVGSRFTE 480

Query: 481 LPKISVESGAHVDMFSG-GGQFSSFGGGGFRDRR 510
           LP+I+ + GA+VD F   GG F+     G RDRR
Sbjct: 481 LPRIAGD-GANVDTFGDMGGSFA-----GMRDRR 503

The following BLAST results are available for this feature:

BLAST of Carg24710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940069.1	1.6e-286	99.81	DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like [Cucurbita moschata]	[more]
XP_023524742.1	6.6e-285	99.38	DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like [Cucurbita pepo subsp...	[more]
XP_022981751.1	1.4e-282	98.83	DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like isoform X1 [Cucurbita...	[more]
XP_022981753.1	1.4e-282	98.83	DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like isoform X2 [Cucurbita...	[more]
XP_004149532.2	2.5e-252	88.28	PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis sativus] >KGN549...	[more]

BLAST of Carg24710 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22330.1	1.5e-193	74.89	putative mitochondrial RNA helicase 2	[more]
AT3G22310.1	1.7e-181	64.92	putative mitochondrial RNA helicase 1	[more]
AT5G26742.2	4.9e-133	61.34	DEAD box RNA helicase (RH3)	[more]
AT5G62190.1	7.5e-81	44.13	DEAD box RNA helicase (PRH75)	[more]
AT3G01540.2	1.3e-69	35.59	DEAD box RNA helicase 1	[more]

BLAST of Carg24710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LUW5\|RH53_ARATH	2.6e-192	74.89	DEAD-box ATP-dependent RNA helicase 53, mitochondrial OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LUW6\|RH9_ARATH	3.0e-180	64.92	DEAD-box ATP-dependent RNA helicase 9, mitochondrial OS=Arabidopsis thaliana OX=...	[more]
sp\|Q0D8N0\|RH53_ORYSJ	5.5e-174	69.33	DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|Q0ILZ4\|RH9_ORYSJ	1.7e-167	65.77	DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|Q8L7S8\|RH3_ARATH	8.9e-132	61.34	DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis thaliana OX=...	[more]

BLAST of Carg24710 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZ67\|A0A0A0KZ67_CUCSA	1.7e-252	88.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G616790 PE=4 SV=1	[more]
tr\|A0A1S3CMH1\|A0A1S3CMH1_CUCME	2.9e-252	88.30	DEAD-box ATP-dependent RNA helicase 53 OS=Cucumis melo OX=3656 GN=LOC103502489 P...	[more]
tr\|A0A2I4GJ28\|A0A2I4GJ28_9ROSI	4.2e-211	75.00	DEAD-box ATP-dependent RNA helicase 53-like OS=Juglans regia OX=51240 GN=LOC1090...	[more]
tr\|A0A2P5AI75\|A0A2P5AI75_PARAD	1.0e-209	76.07	DEAD-box ATP-dependent RNA helicase OS=Parasponia andersonii OX=3476 GN=PanWU01x...	[more]
tr\|A0A2P5ER36\|A0A2P5ER36_9ROSA	1.1e-208	75.68	DEAD-box ATP-dependent RNA helicase OS=Trema orientalis OX=63057 GN=TorRG33x02_1...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0005524	ATP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR014014	RNA_helicase_DEAD_Q_motif
IPR011545	DEAD/DEAH_box_helicase_dom
IPR014001	Helicase_ATP-bd
IPR001650	Helicase_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24710-RA	Carg24710-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 366..446 e-value: 6.7E-32 score: 122.0
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 339..446 e-value: 2.6E-31 score: 108.2
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 341..485 score: 23.087
IPR001650	Helicase, C-terminal	CDD	cd00079	HELICc	coord: 326..454 e-value: 7.41595E-39 score: 138.91
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 126..329 e-value: 1.8E-59 score: 213.6
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 138..312 score: 32.848
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 327..490 e-value: 2.1E-51 score: 176.8
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 109..316 e-value: 2.3E-77 score: 261.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 544..584
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 502..641
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 57..579
None	No IPR available	PANTHER	PTHR24031:SF326	DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-RELATED	coord: 57..579
None	No IPR available	CDD	cd00268	DEADc	coord: 111..312 e-value: 2.111E-84 score: 264.732
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 131..300 e-value: 1.1E-49 score: 168.5
IPR014014	RNA helicase, DEAD-box type, Q motif	PROSITE	PS51195	Q_MOTIF	coord: 107..135 score: 8.546
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 182..468

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24710	Cla023252	Watermelon (97103) v1	carwmB0638
Carg24710	Csa4G616790	Cucumber (Chinese Long) v2	carcuB0660
Carg24710	MELO3C026389	Melon (DHL92) v3.5.1	carmeB0637
Carg24710	ClCG11G016670	Watermelon (Charleston Gray)	carwcgB0621
Carg24710	CSPI04G21810	Wild cucumber (PI 183967)	carcpiB0669
Carg24710	Cucsa.058640	Cucumber (Gy14) v1	carcgyB0713
Carg24710	CmaCh01G013280	Cucurbita maxima (Rimu)	carcmaB0904
Carg24710	CmaCh09G007180	Cucurbita maxima (Rimu)	carcmaB0903
Carg24710	CmoCh01G013830	Cucurbita moschata (Rifu)	carcmoB0881
Carg24710	CmoCh09G007140	Cucurbita moschata (Rifu)	carcmoB0880
Carg24710	Lsi04G019060	Bottle gourd (USVL1VR-Ls)	carlsiB582
Carg24710	Cp4.1LG02g02620	Cucurbita pepo (Zucchini)	carcpeB0909
Carg24710	Cp4.1LG06g05690	Cucurbita pepo (Zucchini)	carcpeB0910
Carg24710	CsGy4G020330	Cucumber (Gy14) v2	carcgybB0636
Carg24710	MELO3C026389.2	Melon (DHL92) v3.6.1	carmedB0646
Carg24710	CsaV3_4G032180	Cucumber (Chinese Long) v3	carcucB0671
Carg24710	Cla97C11G222600	Watermelon (97103) v2	carwmbB0668
Carg24710	Bhi09G002980	Wax gourd	carwgoB0757

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24710	Carg20038	Silver-seed gourd	carcarB561

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24710	Watermelon (97103) v2	carwmbB0667
Carg24710	Watermelon (Charleston Gray)	carwcgB0620
Carg24710	Watermelon (97103) v1	carwmB0637