Carg24669 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24669
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_218 : 51944 .. 53833 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGGCGAAGAGCCCATAATACTTTGGCTCCATCTTCGCGTTAAATCCACCTTGTGGAAAAGGCAACGCTCAGAGGTGAAATCGAGCCAACACAAGATTCGGTTTCTTCAGTGGAAGGAAAGAAGGAAGGAAGGAAGGATCATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGCTCTGCTGATGAAGCCGCTCTTTGCCATGGCTGCGATCTCCATGTTCACCGCGCTAACAAGCTCGCCGGAAAGCACTCGAGATTCTCCCTACTTCAGCCGATCAAAATCGATTCTCCTCTTTGCGATATCTGTCAGGTATTTTTGATTCTGGCTCTGGAAAATGTTTCTGCTGCTGTGCGATTTGATTCTTTGTTTTGAGGTTTCTGTAAAATCGAATCAATGTTGCAGAGAATCTTCGCGTTCTTTTGTACCTTTCTTGGAAATATCTACTCTCTTTCGTCGGTTTCTGATCTCGCTCGTTTCTTCGATTTTTGGAGTTTGAATGATTTGGCGGAGAGGATTCTTATTTCTTTCTGCAATTTCAAATTAAAATCGATTTTGATCTCGGATTTCGTATGTAGGAACGGCGCGCGCTCGTATTCTGTCAACAAGATAGGGCAATTCTTTGCCGAGAATGCGACATTTCGATTCACGGAACGAACGAACATACGCAGAAGCACAATCGATTTCTTCTCACAGGTGTGAAGCTTTCTTCGACTTCTTTTTCGTACCAAACATCTTCGTCCTCCAATGGCTACAATGCTGCCATGGATGTTAAAACTCGAAGCTCCCACGCTTGCAGCAAGGGCCCTAAAATGGCCGCGCACGAAACCTCGAGTTCTCCTTCCGCTGAAAAAGCTGCTCTGTCGACAAGTAATTACAAGGTCGAAGACGGCCAAGCAAGCGACGGAGGTTCGTTCTCGACTAGCAGCATATCGGAATATTTGGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTCGATCCTTCCACCGCCGCTGCCAATCGTTTCTGTAAGGTTTGCAGTACGCCCTCTGCATAGATTGAGAGTACTTTCATGAACTTCCATATTCTTCTTCTTCTTCCTCTTCATCTTCATCATCATCTTCTGATGGTTCCTACTTTGGATTGGTATAGTTTAACGGCGAAATTCTGGCAACTGGGAACCAAAATCTGGAGAGGCAACAGGAATCACTAGGCATCGAAAGATTTGGCAACACCTTGGAATTTGTAGGTAAATTTTCTCAAACTGGATTTTGGAATGGAGTTGGAATCTCCATGAAAACTTGTAGAGGTGGAAAAATGGCGGTGGCTGATAAGATCATCAGCAACTTCGGCTCTGAAAACAATTCTGGTAAAATCAAAAAACAAACAGAAACCAACTTTTTGTTTGTTGCTGCTGATTTGCATATTTTACCTTACTCCCACTCTTTAGATTGCCATTTCATTTGCTGAATTTAAAGTGATTAATGATTTTATGATGAGAATGGAATCAAAATGTCTTTGGTTGTTTGGTTTGATTTGGCAACTAAAGCGACTCCATGTGTTTGGGAACATTCTCCTGTACTAAAATTAGCATCAAACACTTTTCTCACTCTCTTTTACCCATTTCATAAAACAATAGTTCAAATATAATTTTTCTTTTAGCTGGGTAAGTTTAGCACAGCTATGCTCACTTTTGACATTTAATGTTATTTACTTGTTCAATTTTGATACTAAAATTCTTTTAACAAATTTGAATTTGACTGTAAAACAATTTTAAAAAATCAAATTCTCCGCAATGGTATAGTATTGTACTCTTTGAGCATAAGTTCTCATGACTTTGCTTTTAAGCTTCTTCAAAATGTCTCACTCCAATGGAGATAGTATTCTTTGCT

mRNA sequence

AATGGCGAAGAGCCCATAATACTTTGGCTCCATCTTCGCGTTAAATCCACCTTGTGGAAAAGGCAACGCTCAGAGTTTAACGGCGAAATTCTGGCAACTGGGAACCAAAATCTGGAGAGGCAACAGGAATCACTAGGCATCGAAAGATTTGGCAACACCTTGGAATTTGTAGGTAAATTTTCTCAAACTGGATTTTGGAATGGAGTTGGAATCTCCATGAAAACTTGTAGAGGTGGAAAAATGGCGGTGGCTGATAAGATCATCAGCAACTTCGGCTCTGAAAACAATTCTGGTAAAATCAAAAAACAAACAGAAACCAACTTTTTGTTTGTTGCTGCTGATTTGCATATTTTACCTTACTCCCACTCTTTAGATTGCCATTTCATTTGCTGAATTTAAAGTGATTAATGATTTTATGATGAGAATGGAATCAAAATGTCTTTGGTTGTTTGGTTTGATTTGGCAACTAAAGCGACTCCATGTGTTTGGGAACATTCTCCTGTACTAAAATTAGCATCAAACACTTTTCTCACTCTCTTTTACCCATTTCATAAAACAATAGTTCAAATATAATTTTTCTTTTAGCTGGGTAAGTTTAGCACAGCTATGCTCACTTTTGACATTTAATGTTATTTACTTGTTCAATTTTGATACTAAAATTCTTTTAACAAATTTGAATTTGACTGTAAAACAATTTTAAAAAATCAAATTCTCCGCAATGGTATAGTATTGTACTCTTTGAGCATAAGTTCTCATGACTTTGCTTTTAAGCTTCTTCAAAATGTCTCACTCCAATGGAGATAGTATTCTTTGCT

Coding sequence (CDS)

AATGGCGAAGAGCCCATAATACTTTGGCTCCATCTTCGCGTTAAATCCACCTTGTGGAAAAGGCAACGCTCAGAGTTTAACGGCGAAATTCTGGCAACTGGGAACCAAAATCTGGAGAGGCAACAGGAATCACTAGGCATCGAAAGATTTGGCAACACCTTGGAATTTGTAGGTAAATTTTCTCAAACTGGATTTTGGAATGGAGTTGGAATCTCCATGAAAACTTGTAGAGGTGGAAAAATGGCGGTGGCTGATAAGATCATCAGCAACTTCGGCTCTGAAAACAATTCTGGTAAAATCAAAAAACAAACAGAAACCAACTTTTTGTTTGTTGCTGCTGATTTGCATATTTTACCTTACTCCCACTCTTTAGATTGCCATTTCATTTGCTGA

Protein sequence

NGEEPIILWLHLRVKSTLWKRQRSEFNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKTCRGGKMAVADKIISNFGSENNSGKIKKQTETNFLFVAADLHILPYSHSLDCHFIC

Homology

[Close]

BLAST of Carg24669 vs. NCBI nr
Match: XP_022926713.1 (B-box zinc finger protein 20-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 210.7 bits (535), Expect = 3.0e-51
Identity = 104/115 (90.43%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 16  STLWKRQRSEFNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT 75
           ST    +  +FNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT
Sbjct: 199 STAAANRFCKFNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT 258

Query: 76  CRGGKMAVADKIISNFGSENNSGKIKKQTETNFLFVAADLHILPYSHSLDCHFIC 131
           CRG KMAVADKIISNF SENNSGKIKKQTETNFLFVAADLH+LPYSHSLDCHFIC
Sbjct: 259 CRGEKMAVADKIISNFCSENNSGKIKKQTETNFLFVAADLHVLPYSHSLDCHFIC 313

[Close]

BLAST of Carg24669 vs. NCBI nr
Match: XP_023531436.1 (B-box zinc finger protein 20-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 210.7 bits (535), Expect = 3.0e-51
Identity = 104/115 (90.43%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 16  STLWKRQRSEFNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT 75
           ST    +  +FNGEILA GNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT
Sbjct: 199 STAAANRFCKFNGEILAIGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT 258

Query: 76  CRGGKMAVADKIISNFGSENNSGKIKKQTETNFLFVAADLHILPYSHSLDCHFIC 131
           CRG KMAVADKIISNFGSENNSGKIKKQTETNFLFVAA+LHILPYSHSLDCHFIC
Sbjct: 259 CRGEKMAVADKIISNFGSENNSGKIKKQTETNFLFVAAELHILPYSHSLDCHFIC 313

[Close]

BLAST of Carg24669 vs. NCBI nr
Match: XP_022971167.1 (LOW QUALITY PROTEIN: B-box zinc finger protein 20-like [Cucurbita maxima])

HSP 1 Score: 188.7 bits (478), Expect = 1.2e-44
Identity = 96/116 (82.76%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 16  STLWKRQRSEFNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT 75
           ST    +  +FNGEILA GNQNLERQQESLGIERFGNTLEFVGKFSQTG WNGVGISMKT
Sbjct: 199 STAAANRFCKFNGEILAIGNQNLERQQESLGIERFGNTLEFVGKFSQTGSWNGVGISMKT 258

Query: 76  CRGGKMAVADKIISNFGSENNSGKIKKQTETNFLFVAADLHILPY-SHSLDCHFIC 131
            R  KMAV DKII++FG+ENNSGKIK+QTETNFLFV ADLHILPY SHSLDCHFIC
Sbjct: 259 YRDEKMAVGDKIITSFGTENNSGKIKEQTETNFLFVVADLHILPYSSHSLDCHFIC 314

[Close]

BLAST of Carg24669 vs. NCBI nr
Match: XP_022135715.1 (B-box zinc finger protein 20 isoform X1 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 7.5e-18
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 25  EFNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKTCRGGKMAVA 84
           +FN EI+A  NQNLE Q ESLG  RFGNTLEF GK SQT  WNGVGIS KTCR  KM V 
Sbjct: 208 KFNSEIVAFENQNLEDQHESLGTTRFGNTLEFSGKISQTRSWNGVGISRKTCRREKMGVG 267

Query: 85  DKIISNFGSENNSGKIK 102
           D+IIS+FGSE+ +  +K
Sbjct: 268 DQIISSFGSESETILVK 284

The following BLAST results are available for this feature:

BLAST of Carg24669 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926713.1	3.0e-51	90.43	B-box zinc finger protein 20-like isoform X1 [Cucurbita moschata]	[more]
XP_023531436.1	3.0e-51	90.43	B-box zinc finger protein 20-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022971167.1	1.2e-44	82.76	LOW QUALITY PROTEIN: B-box zinc finger protein 20-like [Cucurbita maxima]	[more]
XP_022135715.1	7.5e-18	66.23	B-box zinc finger protein 20 isoform X1 [Momordica charantia]	[more]

BLAST of Carg24669 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg24669 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24669 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24669-RA	Carg24669-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24669	CmoCh11G011070	Cucurbita moschata (Rifu)	carcmoB0245
Carg24669	Cp4.1LG04g01010	Cucurbita pepo (Zucchini)	carcpeB0254
Carg24669	Cla97C02G031640	Watermelon (97103) v2	carwmbB0180
Carg24669	Bhi05G001549	Wax gourd	carwgoB0226

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24669	Carg19389	Silver-seed gourd	carcarB212

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24669	Cucumber (Gy14) v2	carcgybB0188
Carg24669	Cucumber (Gy14) v1	carcgyB0215
Carg24669	Cucurbita maxima (Rimu)	carcmaB0237
Carg24669	Cucurbita maxima (Rimu)	carcmaB0238
Carg24669	Cucurbita maxima (Rimu)	carcmaB0239
Carg24669	Cucurbita moschata (Rifu)	carcmoB0246
Carg24669	Cucurbita moschata (Rifu)	carcmoB0247
Carg24669	Cucurbita pepo (Zucchini)	carcpeB0252
Carg24669	Cucurbita pepo (Zucchini)	carcpeB0253
Carg24669	Cucurbita pepo (Zucchini)	carcpeB0255
Carg24669	Wild cucumber (PI 183967)	carcpiB0201
Carg24669	Cucumber (Chinese Long) v2	carcuB0194
Carg24669	Cucumber (Chinese Long) v3	carcucB0201
Carg24669	Bottle gourd (USVL1VR-Ls)	carlsiB157
Carg24669	Melon (DHL92) v3.5.1	carmeB0180
Carg24669	Melon (DHL92) v3.6.1	carmedB0184
Carg24669	Watermelon (Charleston Gray)	carwcgB0167
Carg24669	Watermelon (97103) v1	carwmB0165
Carg24669	Wax gourd	carwgoB0225