Carg19389 (gene) Silver-seed gourd

Overview
NameCarg19389
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_096 : 327369 .. 328145 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTTAAAACTGGAAGCTCTCACGCTTGCAGCAAGAAGCCTAAAATAGCCGTGAAAGCAATCAGCTCTCATTCCGCTGAAAAAGCTGCTCCATCGACAAGTAATTACAAGGTCGAAGACGGCCAAGCAAGCGACGGCGGTTCCTTCTCGACGAGCAGCATATCGGAATATTTGGAGACATTGCCGGAATGGTGCTTGGAGGAATTTCTCGATCCTTCCGCCGTTGCCAATCACTTCTGTAAGGTTCGCAGTACACCCTCGGAGTAGAGTGAAAGTAATTTCACGAACCTCCATGTTTGCTTGCTTCACACTTCATCCTCTTCTTCTCTCATTCTAATGGTTCCTTCTTTGGATCGGTACAGCTTGATGCATTTGCGAATCAGAATCTGGAGAGCCAGCAAGAATCGTTAGGCACCATCAGATTCGGCAACACCTTGAAATTTGTAGGTAAAATTTCTCAAACTACATCTTGGAATGGAGATAAAATCTCCATGAAAACTTGTAAAGCTGAAGAAATGGCACGGTTGCTGATCAGATCATCAGCAGCTTCGGATCTGAAACAAATCTGGTAAATTTTTAACTGGTTATGATGAGATTGGAATCGAAATCAATTTGTTTGTTTGGTTTGATTTGGCAACTAAACAACTTATTTTTGGGGACATTGGCAGATTATTATTTTAGGCCAAATATATTTTTGGTCCATCAAATTTAATTCGAAATGGTTTAGTTGAATAATAATAATAAATAAAAGATTTGGCAGTTATCATTTTTATT

mRNA sequence

ATGGATGTTAAAACTGGAAGCTCTCACGCTTGCAGCAAGAAGCCTAAAATAGCCCTTGATGCATTTGCGAATCAGAATCTGGAGAGCCAGCAAGAATCGTTAGGCACCATCAGATTCGGCAACACCTTGAAATTTGTAGGTAAAATTTCTCAAACTACATCTTGGAATGGAGATAAAATCTCCATGAAAACTTGTAAAGCTGAAGAAATGGCACGGTTGCTGATCAGATCATCAGCAGCTTCGGATCTGAAACAAATCTGGTAAATTTTTAACTGGTTATGATGAGATTGGAATCGAAATCAATTTGTTTGTTTGGTTTGATTTGGCAACTAAACAACTTATTTTTGGGGACATTGGCAGATTATTATTTTAGGCCAAATATATTTTTGGTCCATCAAATTTAATTCGAAATGGTTTAGTTGAATAATAATAATAAATAAAAGATTTGGCAGTTATCATTTTTATT

Coding sequence (CDS)

ATGGATGTTAAAACTGGAAGCTCTCACGCTTGCAGCAAGAAGCCTAAAATAGCCCTTGATGCATTTGCGAATCAGAATCTGGAGAGCCAGCAAGAATCGTTAGGCACCATCAGATTCGGCAACACCTTGAAATTTGTAGGTAAAATTTCTCAAACTACATCTTGGAATGGAGATAAAATCTCCATGAAAACTTGTAAAGCTGAAGAAATGGCACGGTTGCTGATCAGATCATCAGCAGCTTCGGATCTGAAACAAATCTGGTAA

Protein sequence

MDVKTGSSHACSKKPKIALDAFANQNLESQQESLGTIRFGNTLKFVGKISQTTSWNGDKISMKTCKAEEMARLLIRSSAASDLKQIW
Homology
[Close]
BLAST of Carg19389 vs. NCBI nr
Match: XP_022135715.1 (B-box zinc finger protein 20 isoform X1 [Momordica charantia])

HSP 1 Score: 76.6 bits (187), Expect = 4.5e-11
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 21  AFANQNLESQQESLGTIRFGNTLKFVGKISQTTSWNGDKISMKTCKAEEM 71
           AF NQNLE Q ESLGT RFGNTL+F GKISQT SWNG  IS KTC+ E+M
Sbjct: 215 AFENQNLEDQHESLGTTRFGNTLEFSGKISQTRSWNGVGISRKTCRREKM 264

[Close]
BLAST of Carg19389 vs. NCBI nr
Match: XP_023531436.1 (B-box zinc finger protein 20-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-10
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 21  AFANQNLESQQESLGTIRFGNTLKFVGKISQTTSWNGDKISMKTCKAEEMA 72
           A  NQNLE QQESLG  RFGNTL+FVGK SQT  WNG  ISMKTC+ E+MA
Sbjct: 215 AIGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKTCRGEKMA 265

[Close]
BLAST of Carg19389 vs. NCBI nr
Match: XP_022926713.1 (B-box zinc finger protein 20-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 21  AFANQNLESQQESLGTIRFGNTLKFVGKISQTTSWNGDKISMKTCKAEEMA 72
           A  NQNLE QQESLG  RFGNTL+FVGK SQT  WNG  ISMKTC+ E+MA
Sbjct: 215 ATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKTCRGEKMA 265

[Close]
BLAST of Carg19389 vs. NCBI nr
Match: XP_022971167.1 (LOW QUALITY PROTEIN: B-box zinc finger protein 20-like [Cucurbita maxima])

HSP 1 Score: 72.8 bits (177), Expect = 6.5e-10
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 21  AFANQNLESQQESLGTIRFGNTLKFVGKISQTTSWNGDKISMKTCKAEEMA 72
           A  NQNLE QQESLG  RFGNTL+FVGK SQT SWNG  ISMKT + E+MA
Sbjct: 215 AIGNQNLERQQESLGIERFGNTLEFVGKFSQTGSWNGVGISMKTYRDEKMA 265

The following BLAST results are available for this feature:
BLAST of Carg19389 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022135715.14.5e-1174.00B-box zinc finger protein 20 isoform X1 [Momordica charantia][more]
XP_023531436.11.0e-1072.55B-box zinc finger protein 20-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022926713.11.7e-1072.55B-box zinc finger protein 20-like isoform X1 [Cucurbita moschata][more]
XP_022971167.16.5e-1072.55LOW QUALITY PROTEIN: B-box zinc finger protein 20-like [Cucurbita maxima][more]
BLAST of Carg19389 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg19389 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg19389 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19389-RACarg19389-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg19389CmaCh19G006870Cucurbita maxima (Rimu)carcmaB0440
Carg19389CmoCh19G006990Cucurbita moschata (Rifu)carcmoB0433
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg19389Carg24669Silver-seed gourdcarcarB212
The following block(s) are covering this gene:
GeneOrganismBlock
Carg19389Cucumber (Gy14) v2carcgybB0325
Carg19389Cucumber (Gy14) v2carcgybB0326
Carg19389Cucumber (Gy14) v1carcgyB0368
Carg19389Cucumber (Gy14) v1carcgyB0372
Carg19389Cucurbita maxima (Rimu)carcmaB0438
Carg19389Cucurbita maxima (Rimu)carcmaB0441
Carg19389Cucurbita maxima (Rimu)carcmaB0442
Carg19389Cucurbita maxima (Rimu)carcmaB0443
Carg19389Cucurbita moschata (Rifu)carcmoB0431
Carg19389Cucurbita moschata (Rifu)carcmoB0434
Carg19389Cucurbita moschata (Rifu)carcmoB0436
Carg19389Cucurbita pepo (Zucchini)carcpeB0436
Carg19389Cucurbita pepo (Zucchini)carcpeB0437
Carg19389Cucurbita pepo (Zucchini)carcpeB0438
Carg19389Cucurbita pepo (Zucchini)carcpeB0440
Carg19389Wild cucumber (PI 183967)carcpiB0347
Carg19389Wild cucumber (PI 183967)carcpiB0348
Carg19389Cucumber (Chinese Long) v2carcuB0341
Carg19389Cucumber (Chinese Long) v2carcuB0342
Carg19389Cucumber (Chinese Long) v3carcucB0346
Carg19389Cucumber (Chinese Long) v3carcucB0347
Carg19389Bottle gourd (USVL1VR-Ls)carlsiB288
Carg19389Bottle gourd (USVL1VR-Ls)carlsiB290
Carg19389Melon (DHL92) v3.5.1carmeB0320
Carg19389Melon (DHL92) v3.5.1carmeB0321
Carg19389Melon (DHL92) v3.6.1carmedB0329
Carg19389Melon (DHL92) v3.6.1carmedB0330
Carg19389Watermelon (Charleston Gray)carwcgB0307
Carg19389Watermelon (Charleston Gray)carwcgB0308
Carg19389Watermelon (97103) v1carwmB0305
Carg19389Watermelon (97103) v1carwmB0307
Carg19389Watermelon (97103) v2carwmbB0323
Carg19389Watermelon (97103) v2carwmbB0324
Carg19389Wax gourdcarwgoB0397
Carg19389Wax gourdcarwgoB0398
Carg19389Wax gourdcarwgoB0399
Carg19389Wax gourdcarwgoB0401